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Overview

ID MAG00013
Name BYD1_bin.21
Sample SMP0001
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order Rhodospirillales
Family Magnetovibrionaceae
Genus JANLGW01
Species
Assembly information
Completeness (%) 87.14
Contamination (%) 0.73
GC content (%) 66.0
N50 (bp) 7,323
Genome size (bp) 2,134,489

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2231

Gene name Description KEGG GOs EC E-value Score Sequence
BYD1_k127_10039895_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 7.501e-306 949.0
BYD1_k127_10039895_1 4Fe-4S dicluster domain - - - 3.878e-267 827.0
BYD1_k127_10039895_2 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 499.0
BYD1_k127_10039895_3 Glycosyl transferase - GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 389.0
BYD1_k127_10039895_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00184,K08358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 306.0
BYD1_k127_10039895_5 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.000000000000000000000000000000000000000000000000000000000000000000000000004112 261.0
BYD1_k127_10039895_6 PFAM Nitrate reductase gamma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000003688 223.0
BYD1_k127_10039895_7 - - - - 0.00000000000000000000000001678 114.0
BYD1_k127_10043884_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005851 273.0
BYD1_k127_10046390_0 Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004844 604.0
BYD1_k127_10046390_1 ammonium transporter' K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 525.0
BYD1_k127_10046390_2 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 466.0
BYD1_k127_10046390_3 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000003166 178.0
BYD1_k127_10046390_4 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000001559 175.0
BYD1_k127_10046390_5 Protein of unknown function DUF86 - - - 0.00000000000000000000000000000000002604 139.0
BYD1_k127_10046390_6 to the N-terminal domain of Lon protease K01338,K07157 - 3.4.21.53 0.000000000000000000002299 96.0
BYD1_k127_10046390_7 Belongs to the UPF0434 family K09791 - - 0.000000000000000000007119 98.0
BYD1_k127_10046390_8 Nucleotidyltransferase domain K07075 - - 0.000000000000000002704 88.0
BYD1_k127_10072352_0 Homospermidine synthase K00808 - 2.5.1.44 1.519e-233 736.0
BYD1_k127_10072352_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 4.15e-224 703.0
BYD1_k127_10072352_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.359e-202 641.0
BYD1_k127_10072352_3 PFAM Aminotransferase class I and II K02225 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 304.0
BYD1_k127_10072352_4 KR domain - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 302.0
BYD1_k127_10072352_5 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000000238 175.0
BYD1_k127_10072352_6 membrane protein, required for colicin V production K03558 - - 0.00000000000000000000000000000000000000005927 159.0
BYD1_k127_10072352_7 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000004346 115.0
BYD1_k127_10072352_8 TfoX C-terminal domain K07343 - - 0.000000003694 61.0
BYD1_k127_10075720_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1055.0
BYD1_k127_10075720_1 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 392.0
BYD1_k127_10075720_2 EVE domain - - - 0.000000000000000000000000000000000000000000000000000109 189.0
BYD1_k127_10075720_3 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.00000000000000000000000009661 114.0
BYD1_k127_10075720_4 Protein conserved in bacteria K09780 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000002616 105.0
BYD1_k127_10105856_0 Involved in the TonB-independent uptake of proteins K03641 - - 2.696e-199 644.0
BYD1_k127_10105856_1 MotA/TolQ/ExbB proton channel family K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006996 336.0
BYD1_k127_10105856_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000007826 213.0
BYD1_k127_10105856_3 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000000258 190.0
BYD1_k127_10105856_4 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.00000000000000000000000000000000000000000000000005713 182.0
BYD1_k127_10105856_5 Cell division and transport-associated protein TolA K03646 - - 0.00000000000000000000000000000000000000000000000143 185.0
BYD1_k127_10105856_6 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000006462 148.0
BYD1_k127_10105856_7 Tetratricopeptide repeat - - - 0.000000000000001106 83.0
BYD1_k127_10133691_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1226.0
BYD1_k127_10133691_1 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 426.0
BYD1_k127_10133691_2 Bacterial inner membrane protein - - - 0.000000000000000000000000000000000000003143 152.0
BYD1_k127_10133691_3 DsrC like protein K11179 - - 0.000000000000000000000000000000001216 134.0
BYD1_k127_10133691_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000007392 95.0
BYD1_k127_10133691_5 Zinc-finger domain - - - 0.000000004864 68.0
BYD1_k127_10133691_6 - - - - 0.0000009629 57.0
BYD1_k127_10151753_0 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007959 455.0
BYD1_k127_10151753_1 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 373.0
BYD1_k127_10151753_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008015 340.0
BYD1_k127_10151753_3 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 340.0
BYD1_k127_10151753_4 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004047 261.0
BYD1_k127_10151753_5 COG0784 FOG CheY-like receiver K11443 - - 0.000000000000000000000000000000000000000000000000000000000001059 212.0
BYD1_k127_10261175_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.23e-278 866.0
BYD1_k127_10261175_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004453 486.0
BYD1_k127_10261175_2 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000002823 213.0
BYD1_k127_10261175_3 LysE type translocator - GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0042968,GO:0042970,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000004819 156.0
BYD1_k127_10294860_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009378 452.0
BYD1_k127_10294860_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K19745 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 404.0
BYD1_k127_10294860_2 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 298.0
BYD1_k127_10294860_3 Catalyzes the synthesis of activated sulfate K00955 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000003443 263.0
BYD1_k127_10294860_4 Dihaem cytochrome c - - - 0.00000000000000000000000000006326 122.0
BYD1_k127_10294860_5 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.0000000000000000000000003476 116.0
BYD1_k127_10294860_6 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000001112 85.0
BYD1_k127_10346120_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 600.0
BYD1_k127_10346120_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 348.0
BYD1_k127_10346120_2 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 337.0
BYD1_k127_10346120_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000004569 138.0
BYD1_k127_10353632_0 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 485.0
BYD1_k127_10353632_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000001542 61.0
BYD1_k127_10531751_0 3-beta hydroxysteroid dehydrogenase/isomerase family K01784,K03274 - 5.1.3.2,5.1.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007174 483.0
BYD1_k127_10531751_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004797 361.0
BYD1_k127_10531751_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 305.0
BYD1_k127_10531751_3 Histidine kinase K07638 - 2.7.13.3 0.000000000000000001932 85.0
BYD1_k127_10531751_4 Membrane fusogenic activity K09806 - - 0.00000000000000001835 96.0
BYD1_k127_10531751_5 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000001598 71.0
BYD1_k127_10556756_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 5.429e-236 736.0
BYD1_k127_10556756_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 582.0
BYD1_k127_10556756_10 Helix-turn-helix domain - - - 0.0000002829 57.0
BYD1_k127_10556756_2 Uncharacterized protein family UPF0004 K18707 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035598,GO:0035600,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050497,GO:0071704,GO:0090304,GO:1901360 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 418.0
BYD1_k127_10556756_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005014 364.0
BYD1_k127_10556756_4 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 359.0
BYD1_k127_10556756_5 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006349 289.0
BYD1_k127_10556756_6 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000000132 201.0
BYD1_k127_10556756_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000001985 182.0
BYD1_k127_10556756_8 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000004106 161.0
BYD1_k127_10556756_9 transcriptional - - - 0.00000000000000000000000000000000001344 141.0
BYD1_k127_1056898_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 473.0
BYD1_k127_1056898_1 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000005485 240.0
BYD1_k127_1056898_2 protein conserved in bacteria K09922 - - 0.000000000000000000000000000000000000000001834 163.0
BYD1_k127_10620105_0 HlyD family secretion protein K12542 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 455.0
BYD1_k127_10620105_1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007206 398.0
BYD1_k127_10620105_2 Flagellar motor component K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 373.0
BYD1_k127_10620105_3 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 337.0
BYD1_k127_10620105_4 COG2274 ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006194 311.0
BYD1_k127_10620105_5 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000139 226.0
BYD1_k127_10620105_6 flagellar motor protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000007893 211.0
BYD1_k127_10659675_0 COG0515 Serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 560.0
BYD1_k127_10659675_1 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005723 409.0
BYD1_k127_10659675_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000002667 189.0
BYD1_k127_10659675_3 - - - - 0.000000000000000000000000001015 122.0
BYD1_k127_10659675_4 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000006714 97.0
BYD1_k127_10684972_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 457.0
BYD1_k127_10684972_1 Thioredoxin-like K07152 - - 0.000000001003 61.0
BYD1_k127_10697216_0 WYL domain - - - 3.967e-196 622.0
BYD1_k127_10697216_1 WYL domain - - - 3.967e-196 622.0
BYD1_k127_10697216_2 Bifunctional protein argC, mitochondrial-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006267 388.0
BYD1_k127_10697216_3 Bifunctional protein argC, mitochondrial-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006267 388.0
BYD1_k127_10697216_4 transmembrane transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 308.0
BYD1_k127_10697216_5 transmembrane transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 308.0
BYD1_k127_10697216_6 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000003813 219.0
BYD1_k127_10697216_7 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000003813 219.0
BYD1_k127_10697216_8 phosphinothricin N-acetyltransferase activity - - - 0.000000000000000000000000000000001431 135.0
BYD1_k127_10697216_9 phosphinothricin N-acetyltransferase activity - - - 0.000000000000000000000000000000001431 135.0
BYD1_k127_1074955_0 Nickel-dependent hydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 582.0
BYD1_k127_1074955_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 432.0
BYD1_k127_1074955_2 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008464 370.0
BYD1_k127_1074955_3 2 iron, 2 sulfur cluster binding K02823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 366.0
BYD1_k127_1074955_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000004456 235.0
BYD1_k127_1074955_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000001409 184.0
BYD1_k127_1074955_6 Hydrogenase maturation protease - - - 0.00000000000000000000000000000000002834 139.0
BYD1_k127_1074955_7 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K13040 - 2.7.13.3 0.000000001145 69.0
BYD1_k127_10803548_0 tRNA methyl transferase K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 463.0
BYD1_k127_10803548_1 Protein of unknown function, DUF599 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006474 235.0
BYD1_k127_10803548_2 ABC transporter K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000328 64.0
BYD1_k127_10809482_0 methyl-accepting chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 583.0
BYD1_k127_10809482_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 359.0
BYD1_k127_10809482_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 299.0
BYD1_k127_10809482_3 COG0457 FOG TPR repeat - - - 0.0002845 49.0
BYD1_k127_10813575_0 Nitroreductase family K04719 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016491,GO:0016705,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.13.11.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006227 293.0
BYD1_k127_10813575_1 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000838 283.0
BYD1_k127_10813575_2 NUDIX domain K03574 GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 3.6.1.55 0.0000000000000000000000000000000000127 136.0
BYD1_k127_10823971_0 TopoisomeraseII K02622 - - 6.005e-296 923.0
BYD1_k127_10823971_1 AAA domain, putative AbiEii toxin, Type IV TA system K02028,K10021 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005507 358.0
BYD1_k127_10823971_2 belongs to the bacterial solute-binding protein 3 family K02030,K09996,K10014,K10022 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 334.0
BYD1_k127_10823971_3 (ABC) transporter K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 297.0
BYD1_k127_10823971_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 290.0
BYD1_k127_10823971_5 (ABC) transporter K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001263 265.0
BYD1_k127_10823971_6 addiction module toxin, RelE StbE family K19157 - - 0.0000000000000000000000000000000000000000000003092 168.0
BYD1_k127_10823971_7 COG1607 Acyl-CoA hydrolase K10806 - - 0.00000000000000000000000000000000000000003262 155.0
BYD1_k127_10850442_0 DNA mismatch repair protein, C-terminal domain K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 530.0
BYD1_k127_10850442_1 Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005226 448.0
BYD1_k127_10850442_2 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 436.0
BYD1_k127_10850442_3 Protein of unknown function (DUF3035) - - - 0.000000000000000000004393 96.0
BYD1_k127_10885809_0 AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006931 341.0
BYD1_k127_10885809_1 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005626 316.0
BYD1_k127_10885809_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001919 252.0
BYD1_k127_10885809_3 Iron-containing redox enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000002889 241.0
BYD1_k127_10885809_4 Thermostable hemolysin - - - 0.0000000000000000000000001954 114.0
BYD1_k127_10885809_5 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.00000000000000000000001926 104.0
BYD1_k127_10918838_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 6.949e-199 639.0
BYD1_k127_10918838_1 LUD domain K18929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003059 579.0
BYD1_k127_10918838_10 LUD domain K00782 - - 0.000000000000000000000000000000000000000000000000000001347 199.0
BYD1_k127_10918838_11 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.000000000000000000000000000000000000000000000001001 176.0
BYD1_k127_10918838_12 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.00000000000000000000000000000000000000005404 164.0
BYD1_k127_10918838_13 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000001896 153.0
BYD1_k127_10918838_14 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000009757 154.0
BYD1_k127_10918838_15 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.00000000000000000000000000000000001358 147.0
BYD1_k127_10918838_16 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000004447 114.0
BYD1_k127_10918838_17 Protein of unknown function (DUF2628) - - - 0.000000003361 68.0
BYD1_k127_10918838_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006614 441.0
BYD1_k127_10918838_3 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 342.0
BYD1_k127_10918838_4 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 337.0
BYD1_k127_10918838_5 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006239 330.0
BYD1_k127_10918838_6 membrane-bound lytic murein transglycosylase K08304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 312.0
BYD1_k127_10918838_7 Glutamine amidotransferase class-I K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005839 294.0
BYD1_k127_10918838_8 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002706 276.0
BYD1_k127_10918838_9 Eukaryotic-type carbonic anhydrase K01674 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000004429 220.0
BYD1_k127_10952739_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 442.0
BYD1_k127_10952739_1 PFAM Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001656 261.0
BYD1_k127_10952739_2 GDP-mannose 4,6 dehydratase K01709 - 4.2.1.45 0.000000000000000000000000000000000000000000000000000000000001215 214.0
BYD1_k127_10952739_3 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000002545 183.0
BYD1_k127_10952739_4 GDP-mannose 4,6 dehydratase - - - 0.000000000000001413 87.0
BYD1_k127_10969498_0 Belongs to the UPF0246 family K09861 - - 0.0000000000000000000000000000000000000000000000000000000000001808 221.0
BYD1_k127_10969498_1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000000000000000002792 179.0
BYD1_k127_10969498_2 ArsC family K00537 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.20.4.1 0.000000000000000000000000000000000002507 144.0
BYD1_k127_10969498_3 Squalene/phytoene synthase K21678,K21679 - 2.5.1.103,4.2.3.156 0.000000000002243 70.0
BYD1_k127_10986921_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 5.24e-199 636.0
BYD1_k127_10986921_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002261 283.0
BYD1_k127_10986921_2 Rhodanese Homology Domain - - - 0.00000000000009817 75.0
BYD1_k127_10986921_3 response to abiotic stimulus - - - 0.00001565 58.0
BYD1_k127_1099729_0 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 409.0
BYD1_k127_1099729_1 Cysteine-rich domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 383.0
BYD1_k127_1099729_2 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 355.0
BYD1_k127_1099729_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000001104 228.0
BYD1_k127_1099729_4 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000005618 214.0
BYD1_k127_1099729_5 2OG-Fe(II) oxygenase superfamily K07336,K07394 - - 0.000000000000000000000000000000000000000000000000000001609 209.0
BYD1_k127_1099729_6 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000000006725 172.0
BYD1_k127_1099729_7 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.00000000000000000000000391 105.0
BYD1_k127_11015569_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 3.289e-278 876.0
BYD1_k127_11015569_1 Bacterial DNA topoisomeraes I ATP-binding domain K03168 - 5.99.1.2 2.526e-229 724.0
BYD1_k127_11015569_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000003419 79.0
BYD1_k127_11052477_0 elongation factor G domain IV K02355 - - 2.58e-237 752.0
BYD1_k127_11052477_1 DegT/DnrJ/EryC1/StrS aminotransferase family K00812 - 2.6.1.1 0.000000000007814 65.0
BYD1_k127_11062240_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 561.0
BYD1_k127_11062240_1 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 427.0
BYD1_k127_11062240_10 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.00000000000000000000000000000000000000000000000003516 186.0
BYD1_k127_11062240_11 Protein of unknown function (DUF1150) - - - 0.000000000000000002453 87.0
BYD1_k127_11062240_2 ATPases associated with a variety of cellular activities K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 408.0
BYD1_k127_11062240_3 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 308.0
BYD1_k127_11062240_4 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 290.0
BYD1_k127_11062240_5 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003619 251.0
BYD1_k127_11062240_6 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000001751 228.0
BYD1_k127_11062240_7 Belongs to the small heat shock protein (HSP20) family - - - 0.000000000000000000000000000000000000000000000000000000000009652 214.0
BYD1_k127_11062240_8 Protein conserved in bacteria K09774 - - 0.000000000000000000000000000000000000000000000000000000001077 213.0
BYD1_k127_11062240_9 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000000000000000000000000004792 198.0
BYD1_k127_11089190_0 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007993 569.0
BYD1_k127_11089190_1 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006301 437.0
BYD1_k127_11089190_10 VanZ like family - - - 0.00000000000000000000000000000000000000000000000000001814 190.0
BYD1_k127_11089190_11 COG0784 FOG CheY-like receiver - - - 0.00000000000000000000000000000000000000000000000000003315 193.0
BYD1_k127_11089190_12 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000001244 196.0
BYD1_k127_11089190_13 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000003485 198.0
BYD1_k127_11089190_14 - - - - 0.00000000002616 72.0
BYD1_k127_11089190_15 Sulfotransferase family - - - 0.0004664 51.0
BYD1_k127_11089190_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004976 436.0
BYD1_k127_11089190_3 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 411.0
BYD1_k127_11089190_4 Sodium/hydrogen exchanger family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000353 376.0
BYD1_k127_11089190_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 303.0
BYD1_k127_11089190_6 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000007204 228.0
BYD1_k127_11089190_7 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000000000000000000000000000000000009863 216.0
BYD1_k127_11089190_8 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000001047 214.0
BYD1_k127_11089190_9 COG2131 Deoxycytidylate deaminase K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000006018 200.0
BYD1_k127_11147685_0 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 316.0
BYD1_k127_11147685_1 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001734 272.0
BYD1_k127_11147685_2 Protein of unknown function (DUF1285) K09986 - - 0.00000000000000000000000000000000000000000000006466 177.0
BYD1_k127_11147685_3 DoxX K15977 - - 0.000000000000000000000000000000000000000008047 156.0
BYD1_k127_11147685_4 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.0000000000000000000000000000000000000000458 157.0
BYD1_k127_11173507_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 376.0
BYD1_k127_11173507_1 Apolipoprotein A1/A4/E domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 376.0
BYD1_k127_11173507_2 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000004327 218.0
BYD1_k127_11173507_3 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000107 208.0
BYD1_k127_11193694_0 Penicillin-binding protein 5, C-terminal domain K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 472.0
BYD1_k127_11193694_1 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 407.0
BYD1_k127_11193694_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000007774 260.0
BYD1_k127_11193694_3 Lytic transglycolase K03642 - - 0.000000000000000000000000000000000000000000000000000000000000000000005899 242.0
BYD1_k127_11193694_4 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000043 170.0
BYD1_k127_11193933_0 C-terminal domain of alpha-glycerophosphate oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 486.0
BYD1_k127_11193933_1 COG1177 ABC-type spermidine putrescine transport system, permease component II K11070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007849 287.0
BYD1_k127_11193933_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000006796 198.0
BYD1_k127_11316203_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 436.0
BYD1_k127_11316203_1 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 300.0
BYD1_k127_11316203_2 cheY-homologous receiver domain - - - 0.000000000000000008728 91.0
BYD1_k127_11330074_0 DNA helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 515.0
BYD1_k127_11330074_1 PFAM Phage derived protein Gp49-like (DUF891) - - - 0.000000000000000000000000000000000000000001375 160.0
BYD1_k127_11330074_2 Helix-turn-helix domain - - - 0.0000000000000000000000327 106.0
BYD1_k127_11340420_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 2.668e-224 703.0
BYD1_k127_11340420_1 phosphomannomutase K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009099 593.0
BYD1_k127_11340420_2 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.000000000000001815 81.0
BYD1_k127_11372600_0 Type II/IV secretion system protein K02283,K20527 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004605 344.0
BYD1_k127_11372600_1 Pilus formation protein N terminal region K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 306.0
BYD1_k127_11372600_2 Pilus assembly protein CpaE K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004443 305.0
BYD1_k127_11372600_3 Pilus biogenesis CpaD protein (pilus_cpaD) K02281 - - 0.00000000000000001038 91.0
BYD1_k127_11379968_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 550.0
BYD1_k127_11379968_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 509.0
BYD1_k127_11379968_2 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 500.0
BYD1_k127_11379968_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 481.0
BYD1_k127_11379968_4 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 424.0
BYD1_k127_11379968_5 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008593 287.0
BYD1_k127_11379968_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002395 282.0
BYD1_k127_11379968_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000004931 256.0
BYD1_k127_11379968_8 - - - - 0.000000000000000003444 97.0
BYD1_k127_11385001_0 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 502.0
BYD1_k127_11385001_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 412.0
BYD1_k127_11385001_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.000000000000000000000000000000000000000000000000000163 191.0
BYD1_k127_11386355_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 2.497e-309 955.0
BYD1_k127_11386355_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 1.745e-240 751.0
BYD1_k127_11386355_2 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 455.0
BYD1_k127_11386355_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 421.0
BYD1_k127_11386355_4 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 312.0
BYD1_k127_11386355_5 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005573 289.0
BYD1_k127_11386355_6 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000003396 132.0
BYD1_k127_11386355_7 Domain of unknown function (DUF1476) - - - 0.00000000000000000000000001353 113.0
BYD1_k127_11510410_0 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 413.0
BYD1_k127_11510410_1 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 331.0
BYD1_k127_11510410_2 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.00000000000000000000000000000000001541 149.0
BYD1_k127_11510410_3 COG0457 FOG TPR repeat - - - 0.00000000000000000000000005901 112.0
BYD1_k127_11575097_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 2.127e-286 892.0
BYD1_k127_11575097_1 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009323 476.0
BYD1_k127_11575097_2 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 360.0
BYD1_k127_11575097_3 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 288.0
BYD1_k127_11575097_4 Uncharacterized protein conserved in bacteria (DUF2066) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004778 260.0
BYD1_k127_11575097_5 COG0593 ATPase involved in DNA replication initiation - - - 0.00000000000000000000000000000000000000000000000000000000002327 220.0
BYD1_k127_11575097_6 protein conserved in bacteria K09858 - - 0.0000000000000000000000000000000000000000000000000002044 189.0
BYD1_k127_11575097_7 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.00000000000000000000000000000000000000000000000005217 198.0
BYD1_k127_11575097_8 FecR protein - - - 0.000000000000002511 80.0
BYD1_k127_11610052_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1449.0
BYD1_k127_11610052_1 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 610.0
BYD1_k127_11610052_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 572.0
BYD1_k127_11610052_3 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 510.0
BYD1_k127_11610052_4 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008261 468.0
BYD1_k127_11610052_5 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000004765 243.0
BYD1_k127_11610052_6 Histidine kinase K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000003627 241.0
BYD1_k127_11610052_7 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000001037 229.0
BYD1_k127_11645042_0 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 609.0
BYD1_k127_11645042_1 methionine biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006712 270.0
BYD1_k127_11645042_2 Tetratricopeptide TPR_2 repeat protein K12600 - - 0.0000000000000000000000000051 124.0
BYD1_k127_11670295_0 poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 431.0
BYD1_k127_11670295_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 379.0
BYD1_k127_11670295_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000624 188.0
BYD1_k127_11670295_3 NUDIX domain - - - 0.0000000000000000000000000000004435 125.0
BYD1_k127_11728982_0 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000003501 244.0
BYD1_k127_11728982_1 Belongs to the 'phage' integrase family - - - 0.00000004443 58.0
BYD1_k127_11740500_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 1.739e-230 721.0
BYD1_k127_11740500_1 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 8.155e-206 666.0
BYD1_k127_11740500_2 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 441.0
BYD1_k127_11740500_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 436.0
BYD1_k127_11740500_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 377.0
BYD1_k127_11740500_5 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001721 233.0
BYD1_k127_11740500_6 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000006329 73.0
BYD1_k127_11741145_0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 552.0
BYD1_k127_11741145_1 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 344.0
BYD1_k127_11741145_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000004889 249.0
BYD1_k127_11741145_3 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.0000000000000000000000000000000000000000000009814 170.0
BYD1_k127_11741145_4 Protein of unknown function (FYDLN_acid) - - - 0.00000000002199 75.0
BYD1_k127_11741145_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000001457 72.0
BYD1_k127_11758019_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 308.0
BYD1_k127_11758019_1 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 307.0
BYD1_k127_11758019_2 Apolipoprotein A1/A4/E domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002999 297.0
BYD1_k127_11758019_3 CbiX - - - 0.000000000000000000000000000000001015 140.0
BYD1_k127_11845568_0 Radical SAM superfamily K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 574.0
BYD1_k127_11845568_1 Belongs to the MEMO1 family K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 311.0
BYD1_k127_11845568_2 Belongs to the MEMO1 family K06990 - - 0.00000000000000000000000000000000000000000000000000000000000006038 226.0
BYD1_k127_11845568_3 Inositol monophosphatase family K01082 - 3.1.3.7 0.00000000000000000000000000000000000000000000000001637 186.0
BYD1_k127_11845568_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000007342 117.0
BYD1_k127_1192839_0 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 405.0
BYD1_k127_1192839_1 Proton-conducting membrane transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004931 358.0
BYD1_k127_12061175_0 Zn-dependent protease, contains TPR repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 379.0
BYD1_k127_12061175_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000003705 232.0
BYD1_k127_12097396_0 peptidylprolyl isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000003681 226.0
BYD1_k127_12097396_1 NifZ domain K02597 - - 0.000000000000000000000000000000000000000000000000000000005377 202.0
BYD1_k127_12097396_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000003925 142.0
BYD1_k127_12097396_3 May protect the nitrogenase Fe-Mo protein from oxidative damage K02595 - - 0.000000000000000000000000003725 113.0
BYD1_k127_1210385_0 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 332.0
BYD1_k127_1210385_1 BON domain - - - 0.0000000000000000000000000000000000000000004413 169.0
BYD1_k127_1210385_2 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000001337 160.0
BYD1_k127_1210385_3 Periplasmic binding protein - - - 0.0000000000000000000000005374 114.0
BYD1_k127_1210385_4 Belongs to the UPF0102 family K07460 - - 0.00000000000000000001933 101.0
BYD1_k127_12121805_0 Cyclic nucleotide-monophosphate binding domain K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000358 246.0
BYD1_k127_12121805_1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000001137 223.0
BYD1_k127_12121805_10 ATPase with chaperone activity K07391 - - 0.0009972 45.0
BYD1_k127_12121805_2 HEPN domain - - - 0.0000000000000000000000000000000000000000000000000009914 186.0
BYD1_k127_12121805_3 Nucleotidyltransferase domain - - - 0.000000000000000000000000000000000000000000001461 166.0
BYD1_k127_12121805_4 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000000000001877 149.0
BYD1_k127_12121805_5 Domain of unknown function (DUF4142) K08995 - - 0.00000000000000000000000000000000002711 143.0
BYD1_k127_12121805_7 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.00000002969 55.0
BYD1_k127_12121805_8 - - - - 0.0000261 56.0
BYD1_k127_12156598_0 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005113 535.0
BYD1_k127_12156598_1 nitrate reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000006754 238.0
BYD1_k127_12156598_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K21834 - - 0.00000000000000000000000000000000000000000000000000000000000002788 228.0
BYD1_k127_12156598_3 PIN domain - - - 0.000000000000000000000000000000000000000000000000522 179.0
BYD1_k127_12156598_4 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000000000418 145.0
BYD1_k127_12156598_5 PFAM HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.0000000000000000000000001083 113.0
BYD1_k127_12156598_6 protein encoded in hypervariable junctions of pilus gene clusters - - - 0.0000000000000000000017 100.0
BYD1_k127_12156598_7 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.00000000000134 71.0
BYD1_k127_1251166_0 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003087 295.0
BYD1_k127_1251166_1 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000002191 140.0
BYD1_k127_1251166_2 - - - - 0.0000000000001982 75.0
BYD1_k127_1271550_0 belongs to the bacterial solute-binding protein 3 family K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008258 296.0
BYD1_k127_1271550_1 Hydantoinase B/oxoprolinase K01469 - 3.5.2.9 0.000000000000000000000000003406 113.0
BYD1_k127_1295425_0 COG1138 Cytochrome c biogenesis factor K02198 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009486 438.0
BYD1_k127_1295425_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 370.0
BYD1_k127_1295425_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005335 298.0
BYD1_k127_1295425_3 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009105 270.0
BYD1_k127_1295425_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 GO:0003674,GO:0003824,GO:0008150,GO:0009987,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043933,GO:0044085,GO:0065003,GO:0071840 - 0.00000000000000000000000000000000000000000003338 168.0
BYD1_k127_1295425_5 Type VIII secretion system (T8SS), CsgF protein K04338 - - 0.00000000000000003059 83.0
BYD1_k127_1295425_6 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.000000004353 59.0
BYD1_k127_1394791_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 470.0
BYD1_k127_1394791_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K15738 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 351.0
BYD1_k127_1394791_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000000002574 242.0
BYD1_k127_1394791_3 GGDEF domain - - - 0.0000000000153 73.0
BYD1_k127_1411099_0 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 2.957e-237 745.0
BYD1_k127_1411099_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 479.0
BYD1_k127_1411099_2 Dyp-type peroxidase family K07223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001275 285.0
BYD1_k127_1411099_3 transcriptional - - - 0.0000000000000000000000000000000000007024 144.0
BYD1_k127_1411099_4 Autoinducer binding domain K19731 - - 0.000000000000000000000000000000004762 137.0
BYD1_k127_1430286_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1416.0
BYD1_k127_1430286_1 Esterase-like activity of phytase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 420.0
BYD1_k127_1430286_2 dithiol-disulfide isomerase involved in polyketide biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000001611 232.0
BYD1_k127_1430286_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000000000000000002024 143.0
BYD1_k127_1430286_4 Flavinator of succinate dehydrogenase K09159 - - 0.000000000000193 72.0
BYD1_k127_1513657_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 3.049e-194 618.0
BYD1_k127_1513657_1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008943 400.0
BYD1_k127_1513657_2 ATPases associated with a variety of cellular activities K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 398.0
BYD1_k127_1513657_3 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 396.0
BYD1_k127_1513657_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006397 393.0
BYD1_k127_1513657_5 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.0001088 45.0
BYD1_k127_1518666_0 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000001948 228.0
BYD1_k127_1518666_1 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000002272 136.0
BYD1_k127_1518666_2 Involved in the processing of the 5'end of 16S rRNA K08301 - - 0.0000000000000000000000000000000001959 142.0
BYD1_k127_1543555_0 Heat shock 70 kDa protein K04043 - - 0.0 1050.0
BYD1_k127_1543555_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 528.0
BYD1_k127_1543555_10 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000001313 122.0
BYD1_k127_1543555_11 Integral membrane protein (DUF2244) - - - 0.0000000003201 68.0
BYD1_k127_1543555_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 456.0
BYD1_k127_1543555_3 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 356.0
BYD1_k127_1543555_4 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 353.0
BYD1_k127_1543555_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006395 312.0
BYD1_k127_1543555_6 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 296.0
BYD1_k127_1543555_7 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 300.0
BYD1_k127_1543555_8 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 289.0
BYD1_k127_1543555_9 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000001865 136.0
BYD1_k127_1553013_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 510.0
BYD1_k127_1553013_1 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000006687 147.0
BYD1_k127_1553013_2 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000003383 91.0
BYD1_k127_1599316_0 Molecular chaperone. Has ATPase activity K04079 - - 2.512e-283 882.0
BYD1_k127_1599316_1 COG0513 Superfamily II DNA and RNA helicases K17675 - 3.6.4.13 2.943e-261 831.0
BYD1_k127_1599316_2 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 289.0
BYD1_k127_1599316_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000002377 218.0
BYD1_k127_1599316_4 S4 RNA-binding domain K04762 - - 0.00000000000000000000000000000000000000001835 168.0
BYD1_k127_1599316_5 Sel1-like repeats. K07126 - - 0.000000000000000000000000006725 119.0
BYD1_k127_1599316_6 - - - - 0.00000000000000000000000006502 120.0
BYD1_k127_1599316_7 PFAM Cold-shock protein, DNA-binding - - - 0.0000000000000000000000004339 109.0
BYD1_k127_1604817_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 1.433e-194 635.0
BYD1_k127_1604817_1 Dehydrogenase E1 component K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007145 501.0
BYD1_k127_1604817_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000008518 105.0
BYD1_k127_16166_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 359.0
BYD1_k127_16166_1 COG0314 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000001887 227.0
BYD1_k127_16166_2 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000000000000000002188 113.0
BYD1_k127_16166_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000005817 81.0
BYD1_k127_16166_4 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.00000000000002322 74.0
BYD1_k127_1636939_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 551.0
BYD1_k127_1636939_1 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 337.0
BYD1_k127_1653191_0 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 585.0
BYD1_k127_1653191_1 - - - - 0.00000000000000001338 94.0
BYD1_k127_1656492_0 Cys/Met metabolism PLP-dependent enzyme K01760 GO:0000096,GO:0000098,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004121,GO:0006082,GO:0006090,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006520,GO:0006534,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009093,GO:0009987,GO:0016054,GO:0016829,GO:0016846,GO:0019448,GO:0019450,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044273,GO:0044281,GO:0044282,GO:0046395,GO:0046439,GO:0046483,GO:0047804,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1990414 4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 426.0
BYD1_k127_1656492_1 Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system K02074,K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 290.0
BYD1_k127_1656492_2 COG1108 ABC-type Mn2 Zn2 transport systems, permease components K02075,K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007361 278.0
BYD1_k127_1680297_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 4.737e-228 715.0
BYD1_k127_1680297_1 C4-dicarboxylate ABC transporter substrate-binding protein K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008561 353.0
BYD1_k127_1680297_2 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006253 345.0
BYD1_k127_1680297_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 291.0
BYD1_k127_1680297_4 FtsJ-like methyltransferase K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001199 286.0
BYD1_k127_1680297_5 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000002953 271.0
BYD1_k127_1680297_6 Protein required for attachment to host cells - - - 0.00000000000000000000000000000005473 143.0
BYD1_k127_1680297_7 ATP-dependent helicase K03579 - 3.6.4.13 0.00000000000000000009454 88.0
BYD1_k127_1680297_8 - - - - 0.0000000000003162 71.0
BYD1_k127_1729280_0 domain, Protein - - - 3.81e-230 757.0
BYD1_k127_1729280_1 PFAM Binding-protein-dependent transport system inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 625.0
BYD1_k127_1729280_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000007799 223.0
BYD1_k127_1729280_11 COG0784 FOG CheY-like receiver K03413 - - 0.0000000000000000000000000000000000000000000000000000000000004674 213.0
BYD1_k127_1729280_12 SAF K02386 - - 0.00000000000000000000000000000000000000000000000000000005531 209.0
BYD1_k127_1729280_13 PFAM MgtE intracellular - - - 0.0000000000000000000000000000000000000000000000000000004235 203.0
BYD1_k127_1729280_14 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000000000000000000007145 196.0
BYD1_k127_1729280_15 Chemotaxis phosphatase, CheZ - - - 0.00000000000000000000000000000000000000000000000000001311 203.0
BYD1_k127_1729280_16 Flagellar basal body rod FlgEFG protein C-terminal K02390 - - 0.0000000000000000000000000000000007946 136.0
BYD1_k127_1729280_17 Class II flagellar assembly regulator - - - 0.0000000000000000000306 96.0
BYD1_k127_1729280_18 - - - - 0.000000000001435 77.0
BYD1_k127_1729280_2 FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 579.0
BYD1_k127_1729280_3 Iron deficiency-induced protein A K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000616 388.0
BYD1_k127_1729280_4 Flagella basal body rod protein K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007959 379.0
BYD1_k127_1729280_5 ATPases associated with a variety of cellular activities K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 341.0
BYD1_k127_1729280_6 Flagellar L-ring protein K02393 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 286.0
BYD1_k127_1729280_7 Belongs to the flagella basal body rod proteins family K02391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005667 248.0
BYD1_k127_1729280_8 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001905 246.0
BYD1_k127_1729280_9 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000000000005984 221.0
BYD1_k127_1752780_0 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.0 1284.0
BYD1_k127_1752780_1 DEAD-like helicases superfamily K04066 - - 7.271e-267 840.0
BYD1_k127_1752780_2 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 604.0
BYD1_k127_1752780_3 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 515.0
BYD1_k127_1752780_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 503.0
BYD1_k127_1752780_5 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 375.0
BYD1_k127_1752780_6 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 298.0
BYD1_k127_1752780_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000000000000000000000000002718 196.0
BYD1_k127_1752780_8 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000001618 185.0
BYD1_k127_1752780_9 protein conserved in bacteria K09921 - - 0.00000000000000000000000000000000000000008797 162.0
BYD1_k127_1774022_0 Part of a membrane complex involved in electron transport K03615 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 585.0
BYD1_k127_1774022_1 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 298.0
BYD1_k127_1774022_2 Part of a membrane complex involved in electron transport K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006808 243.0
BYD1_k127_1774022_3 GHKL domain - - - 0.0000000000004801 72.0
BYD1_k127_1791292_0 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 338.0
BYD1_k127_1791292_1 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000000000002397 200.0
BYD1_k127_1791292_2 Belongs to the CinA family K03743 - 3.5.1.42 0.000000000000000000000000000000000000002445 165.0
BYD1_k127_1791292_3 COG1664 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000005632 115.0
BYD1_k127_1791292_4 Oligoketide cyclase lipid transport protein K18588 - - 0.0000000000000005241 79.0
BYD1_k127_1797810_0 PFAM FAD linked oxidase domain protein K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039 522.0
BYD1_k127_1797810_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 359.0
BYD1_k127_1797810_2 rRNA (adenine-N6,N6-)-dimethyltransferase activity K00561,K02528 - 2.1.1.182,2.1.1.184 0.00000000000000000000000000000000000003189 153.0
BYD1_k127_1811141_0 HD domain - - - 0.000000000000000000000000000000000000000642 160.0
BYD1_k127_1811141_1 COG1530 Ribonucleases G and E K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000009339 134.0
BYD1_k127_1811141_2 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000000004266 77.0
BYD1_k127_1811141_3 Resolvase - - - 0.0000000002866 60.0
BYD1_k127_1820633_0 Thiamine pyrophosphate enzyme, central domain K01608 - 4.1.1.47 2.81e-308 953.0
BYD1_k127_1820633_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000197 442.0
BYD1_k127_1820633_2 Belongs to the hyi family K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 404.0
BYD1_k127_1820633_3 helix_turn_helix isocitrate lyase regulation K13641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002369 287.0
BYD1_k127_1820633_4 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000009851 167.0
BYD1_k127_1835354_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 464.0
BYD1_k127_1835354_1 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 346.0
BYD1_k127_1835354_2 Hexapeptide repeat of succinyl-transferase K13018 - 2.3.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008109 307.0
BYD1_k127_1835354_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002358 235.0
BYD1_k127_1844309_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K01847 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 373.0
BYD1_k127_1844309_1 GcrA cell cycle regulator K13583 - - 0.00000000000000000000000000000000003083 139.0
BYD1_k127_1963866_0 Gaf domain K01768,K04769 - 4.6.1.1 3.292e-312 975.0
BYD1_k127_1963866_1 CHASE2 K01768 - 4.6.1.1 1.795e-244 777.0
BYD1_k127_1963866_10 transferase activity, transferring glycosyl groups - - - 0.0006071 51.0
BYD1_k127_1963866_2 ABC transporter transmembrane region K11004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002782 375.0
BYD1_k127_1963866_3 YHYH protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 300.0
BYD1_k127_1963866_4 Diguanylate cyclase with PAS PAC sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002993 268.0
BYD1_k127_1963866_5 COG2518 Protein-L-isoaspartate carboxylmethyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000001056 212.0
BYD1_k127_1963866_6 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.000000000000000000000000000000000000000000000000000000005701 205.0
BYD1_k127_1963866_7 - - - - 0.00000000000000000001357 96.0
BYD1_k127_1963866_8 Rhodanese Homology Domain - - - 0.00000000000000000002801 94.0
BYD1_k127_1963866_9 - - - - 0.0001171 48.0
BYD1_k127_1965051_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 7.421e-314 993.0
BYD1_k127_1965051_1 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 2.603e-237 749.0
BYD1_k127_1965051_10 transcriptional regulator K13643 - - 0.0000000000000000000000000000000000000000000000000000000000002318 214.0
BYD1_k127_1965051_11 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000000000000000000005246 202.0
BYD1_k127_1965051_12 Ferredoxin K04755 - - 0.00000000000000000000000000000000000000000000000000006634 190.0
BYD1_k127_1965051_13 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000007268 179.0
BYD1_k127_1965051_14 Protein conserved in bacteria - - - 0.00000000000000000000000000000000009748 133.0
BYD1_k127_1965051_15 Bacterioferritin comigratory protein K03564 - 1.11.1.15 0.000000000000000000000000000002578 122.0
BYD1_k127_1965051_2 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 3.497e-208 653.0
BYD1_k127_1965051_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009576 606.0
BYD1_k127_1965051_4 Protein of unknown function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 603.0
BYD1_k127_1965051_5 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 408.0
BYD1_k127_1965051_6 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 357.0
BYD1_k127_1965051_7 hydrolase of the alpha beta superfamily K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 342.0
BYD1_k127_1965051_8 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 285.0
BYD1_k127_1965051_9 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488,K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000004704 224.0
BYD1_k127_2104444_0 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 0.0 1032.0
BYD1_k127_2104444_1 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004338 386.0
BYD1_k127_2104444_2 Phage derived protein Gp49-like (DUF891) - - - 0.0000000000000000000000000000000000000000004627 165.0
BYD1_k127_2104444_3 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000001852 153.0
BYD1_k127_2104444_4 - - - - 0.00000000000000000000000000000003915 131.0
BYD1_k127_2104444_5 Helix-turn-helix domain - - - 0.0000000000000000000000000001907 125.0
BYD1_k127_2130345_0 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 563.0
BYD1_k127_2130345_1 helicase superfamily c-terminal domain K03732,K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 558.0
BYD1_k127_2130345_2 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009343 387.0
BYD1_k127_2130345_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001009 275.0
BYD1_k127_2130345_4 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000000000000001424 197.0
BYD1_k127_2130345_5 COG2199 FOG GGDEF domain K13069 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000002932 199.0
BYD1_k127_2130345_6 COG1335 Amidases related to nicotinamidase - - - 0.000000000000000000000000000000000000000000000000003701 186.0
BYD1_k127_2130345_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000002698 167.0
BYD1_k127_2130345_8 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000004385 98.0
BYD1_k127_2130345_9 Belongs to the SlyX family K03745 - - 0.0000000000274 73.0
BYD1_k127_2171825_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 437.0
BYD1_k127_2171825_1 Transposase DDE domain K07492 - - 0.00000001187 58.0
BYD1_k127_2194318_0 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 427.0
BYD1_k127_2194318_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 395.0
BYD1_k127_2194318_2 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004126 256.0
BYD1_k127_2194318_3 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000001961 244.0
BYD1_k127_2194318_4 Peptidase family M48 K03799 - - 0.0000000000000000000000000000000000000000000000000000000000003733 223.0
BYD1_k127_2194318_5 COG1778 Low specificity phosphatase (HAD superfamily) K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000001092 180.0
BYD1_k127_2194318_6 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000002973 129.0
BYD1_k127_2257534_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 540.0
BYD1_k127_2257534_1 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000000000000000000000009241 183.0
BYD1_k127_2269124_0 Bacterial regulatory protein, Fis family K10912 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 573.0
BYD1_k127_2269124_1 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 432.0
BYD1_k127_2269124_2 PFAM HhH-GPD superfamily base excision DNA repair protein K03575 GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002713 370.0
BYD1_k127_2269124_3 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002651 267.0
BYD1_k127_2269124_4 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000479 177.0
BYD1_k127_2269124_5 Protein of unknown function (DUF721) - - - 0.0000000000000000000000000000000003465 144.0
BYD1_k127_2269124_6 Cytochrome c2 K08738 - - 0.0000000000000000000007556 101.0
BYD1_k127_2269124_7 Cytochrome c2 K08738 - - 0.000000000000000004739 92.0
BYD1_k127_2269124_8 Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain K08738 GO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244 - 0.000000000000000005823 88.0
BYD1_k127_2292283_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 3.42e-238 748.0
BYD1_k127_2292283_1 Pyridine nucleotide-disulphide oxidoreductase - - - 7.858e-219 691.0
BYD1_k127_2335901_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0 1018.0
BYD1_k127_2335901_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009968 334.0
BYD1_k127_2335901_2 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 324.0
BYD1_k127_2335901_3 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006604 278.0
BYD1_k127_2335901_4 haloacid dehalogenase-like hydrolase K02203 - 2.7.1.39,3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000002221 215.0
BYD1_k127_2335901_5 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000000000001872 192.0
BYD1_k127_2335901_6 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000000000000000000000000004608 147.0
BYD1_k127_2352103_0 Voltage gated chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007139 526.0
BYD1_k127_2352103_1 DNA helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004923 441.0
BYD1_k127_2352103_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 391.0
BYD1_k127_2352103_3 COG2199 FOG GGDEF domain K13590 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003895 320.0
BYD1_k127_2352103_4 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 296.0
BYD1_k127_2352103_5 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000004547 226.0
BYD1_k127_2393463_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 6.156e-248 781.0
BYD1_k127_2393463_1 - - - - 0.00000000000000000000000000000000000000000005118 167.0
BYD1_k127_2410806_0 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000007526 217.0
BYD1_k127_2410806_1 Domain of unknown function (DUF1849) - - - 0.00000000000000000000000000000000000000003594 162.0
BYD1_k127_2425027_0 MotA/TolQ/ExbB proton channel family K02556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 305.0
BYD1_k127_2425027_1 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.00000000000000000000000000000000000000000005376 163.0
BYD1_k127_2425027_2 Flagellar assembly protein FliH K02411 - - 0.0000000000000000002491 99.0
BYD1_k127_2425027_3 FliG middle domain K02410 - - 0.00000000000002057 73.0
BYD1_k127_2461919_0 COG2217 Cation transport ATPase K01533 - 3.6.3.4 7.698e-284 906.0
BYD1_k127_2461919_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 2.942e-271 840.0
BYD1_k127_2461919_10 Cytochrome oxidase maturation protein cbb3-type - - - 0.0000000000000007312 79.0
BYD1_k127_2461919_12 Cbb3-type cytochrome oxidase component FixQ K00407 - - 0.0000000001592 63.0
BYD1_k127_2461919_2 Nitrogen fixation protein fixG - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 605.0
BYD1_k127_2461919_3 N-terminal domain of cytochrome oxidase-cbb3, FixP K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 358.0
BYD1_k127_2461919_4 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008278 350.0
BYD1_k127_2461919_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 323.0
BYD1_k127_2461919_6 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001595 272.0
BYD1_k127_2461919_7 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000000000000000000000008355 243.0
BYD1_k127_2461919_8 FixH - - - 0.000000000000000000000000000000000001025 144.0
BYD1_k127_2461919_9 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000001719 108.0
BYD1_k127_2463193_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 7.22e-226 711.0
BYD1_k127_2463193_1 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 414.0
BYD1_k127_2463193_2 DNA polymerase III K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000197 301.0
BYD1_k127_2463193_3 membrane - - - 0.00000000000000000000000000000000005057 136.0
BYD1_k127_2482754_0 nitrogen fixation negative regulator NifL - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003517 395.0
BYD1_k127_2482754_1 Fis Family K02584 - - 0.00000000000000000000000000000000000000000000000000009319 193.0
BYD1_k127_2494850_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 1.663e-302 938.0
BYD1_k127_2494850_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 4.119e-197 631.0
BYD1_k127_2494850_10 TIGRFAM phosphocarrier, HPr family K11189 - - 0.000000000000000000000000002349 117.0
BYD1_k127_2494850_11 Protein of unknown function (DUF423) - - - 0.00000000000000000001395 95.0
BYD1_k127_2494850_2 Stimulus-sensing domain K14980 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008351 524.0
BYD1_k127_2494850_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K14981 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 356.0
BYD1_k127_2494850_4 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 318.0
BYD1_k127_2494850_5 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000008727 220.0
BYD1_k127_2494850_6 PTS system fructose IIA component K02793 - 2.7.1.191 0.000000000000000000000000000000000000000000000000000000002836 202.0
BYD1_k127_2494850_7 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.00000000000000000000000000000000001457 145.0
BYD1_k127_2494850_8 helix_turn_helix multiple antibiotic resistance protein K06075 - - 0.0000000000000000000000000000000001043 138.0
BYD1_k127_2494850_9 COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 - - 0.00000000000000000000000000000001083 132.0
BYD1_k127_2520463_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 437.0
BYD1_k127_2520463_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000648 277.0
BYD1_k127_2554239_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 564.0
BYD1_k127_2554239_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000000001201 231.0
BYD1_k127_2554239_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000000004602 220.0
BYD1_k127_262778_0 AcrB/AcrD/AcrF family K18989 - - 0.0 1099.0
BYD1_k127_262778_1 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 471.0
BYD1_k127_262778_2 DegT/DnrJ/EryC1/StrS aminotransferase family K01740 - 2.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 364.0
BYD1_k127_262778_3 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 360.0
BYD1_k127_262778_4 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 309.0
BYD1_k127_262778_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18990 - - 0.000000000000000000000000000000000000000000000000000000000000000000001788 250.0
BYD1_k127_262778_6 - - - - 0.0000000000000000000000000000000000000000000000000000009672 203.0
BYD1_k127_262778_7 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family - - - 0.00000000000000000000000000000000000001814 149.0
BYD1_k127_262778_8 helix_turn_helix multiple antibiotic resistance protein K06075 - - 0.000000000000000000000003687 109.0
BYD1_k127_262778_9 Protein of unknown function (DUF1491) - - - 0.00000000000000000004985 94.0
BYD1_k127_2640770_0 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008352 360.0
BYD1_k127_2640770_1 phosphoserine phosphatase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 303.0
BYD1_k127_2640770_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005312 278.0
BYD1_k127_2640770_3 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 0.00000000000003936 75.0
BYD1_k127_2649168_0 belongs to the aldehyde dehydrogenase family K09472,K12254 - 1.2.1.54,1.2.1.99 4.939e-227 711.0
BYD1_k127_2649168_1 Domain of unknown function (DUF4405) - - - 0.0002508 50.0
BYD1_k127_2674220_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 409.0
BYD1_k127_2674220_1 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 337.0
BYD1_k127_2674220_2 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000006691 138.0
BYD1_k127_2674220_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000002143 115.0
BYD1_k127_2674220_4 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000003279 110.0
BYD1_k127_2674220_5 - - - - 0.000000000001135 75.0
BYD1_k127_2674220_6 COG0768 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.00008544 47.0
BYD1_k127_2701764_0 GDP-mannose 4,6 dehydratase K08678 - 4.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 549.0
BYD1_k127_2701764_1 EAL domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007997 428.0
BYD1_k127_2701764_2 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007699 403.0
BYD1_k127_2701764_3 ABC-2 type transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007083 325.0
BYD1_k127_2701764_4 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008216 332.0
BYD1_k127_2701764_5 EAL domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005894 282.0
BYD1_k127_2701764_6 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000002667 220.0
BYD1_k127_2701764_7 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.000000000000000000000000000000000000000000000000005849 192.0
BYD1_k127_270466_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 1.17e-271 846.0
BYD1_k127_270466_1 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 535.0
BYD1_k127_270466_10 domain, Protein - - - 0.000001378 59.0
BYD1_k127_270466_11 Sporulation related domain - - - 0.000003258 58.0
BYD1_k127_270466_2 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 373.0
BYD1_k127_270466_3 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009389 365.0
BYD1_k127_270466_4 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008208 271.0
BYD1_k127_270466_5 Hemerythrin HHE cation binding domain K07216 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001887 258.0
BYD1_k127_270466_6 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001395 255.0
BYD1_k127_270466_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000001299 151.0
BYD1_k127_270466_8 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000002227 141.0
BYD1_k127_270466_9 Segregation and condensation protein ScpA K05896 - - 0.0000000000000000000000000000003361 124.0
BYD1_k127_2722578_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 355.0
BYD1_k127_2722578_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005071 344.0
BYD1_k127_2722578_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 306.0
BYD1_k127_2722578_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000002889 53.0
BYD1_k127_2782388_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 1.724e-194 617.0
BYD1_k127_2782388_1 Cys/Met metabolism PLP-dependent enzyme K00643 - 2.3.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 558.0
BYD1_k127_2782388_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006069 356.0
BYD1_k127_2782388_3 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000008854 240.0
BYD1_k127_2782388_4 Putative AphA-like transcriptional regulator - - - 0.00000000002416 67.0
BYD1_k127_2850315_0 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008515 508.0
BYD1_k127_2850315_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 491.0
BYD1_k127_2850315_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 464.0
BYD1_k127_2850315_3 Oxidative deamination of D-amino acids K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000515 419.0
BYD1_k127_2850315_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009543 353.0
BYD1_k127_2850315_5 integral membrane protein - - - 0.000000000000000000000000000000000004191 142.0
BYD1_k127_2850315_6 PQQ enzyme repeat K05889,K12132 - 1.1.2.6,2.7.11.1 0.000000000000000000000000003747 125.0
BYD1_k127_2850315_7 phosphorelay signal transduction system - - - 0.0000000000000000001624 93.0
BYD1_k127_2850315_8 - - - - 0.0000000000000002658 91.0
BYD1_k127_2850315_9 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019144,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0047631,GO:0050896 3.6.1.13 0.00000000000004352 74.0
BYD1_k127_2858717_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0 1517.0
BYD1_k127_2872130_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 503.0
BYD1_k127_2872130_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 480.0
BYD1_k127_2872130_2 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000942 159.0
BYD1_k127_2933947_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 8.144e-269 833.0
BYD1_k127_2933947_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 608.0
BYD1_k127_2933947_2 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000004081 257.0
BYD1_k127_2936369_0 oligoendopeptidase F K08602 - - 4.16e-245 801.0
BYD1_k127_2936369_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 8.44e-229 722.0
BYD1_k127_2936369_2 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 9.316e-194 616.0
BYD1_k127_2936369_3 transhydrogenase subunit alpha K00324 GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 467.0
BYD1_k127_2936369_4 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008129 299.0
BYD1_k127_2936369_5 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000004913 206.0
BYD1_k127_2936369_6 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000003933 164.0
BYD1_k127_2958431_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 454.0
BYD1_k127_2958431_1 Methyltransferase type 11 K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000002219 266.0
BYD1_k127_2958431_2 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.00000000000000000000004894 103.0
BYD1_k127_3015303_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 604.0
BYD1_k127_3015303_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001376 293.0
BYD1_k127_3015303_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000156 244.0
BYD1_k127_304080_0 Precorrin-3B K05934,K13541 - 2.1.1.131,3.7.1.12 3.303e-198 634.0
BYD1_k127_304080_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 482.0
BYD1_k127_304080_10 Putative zinc- or iron-chelating domain K09160 - - 0.00000000000000000000000000000000000000000000000009909 197.0
BYD1_k127_304080_11 Precorrin-6x reductase CbiJ/CobK K05895 - 1.3.1.106,1.3.1.54 0.0000000000000000000000000000000000000000000001485 188.0
BYD1_k127_304080_2 PHB de-polymerase C-terminus K05973 - 3.1.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 473.0
BYD1_k127_304080_3 Precorrin-4 K05936 - 2.1.1.133,2.1.1.271 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004705 395.0
BYD1_k127_304080_4 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 394.0
BYD1_k127_304080_5 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001601 269.0
BYD1_k127_304080_6 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008161 250.0
BYD1_k127_304080_7 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000004935 220.0
BYD1_k127_304080_8 protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000000001301 215.0
BYD1_k127_304080_9 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000859 197.0
BYD1_k127_3052543_0 Uracil-DNA glycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001448 278.0
BYD1_k127_3052543_1 Domain of unknown function (DUF4143) K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002365 261.0
BYD1_k127_3052543_2 low molecular weight K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000000000003098 203.0
BYD1_k127_3052543_3 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K03796 - - 0.00000000000000000000000000000001342 138.0
BYD1_k127_307922_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005266 481.0
BYD1_k127_307922_1 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000008026 239.0
BYD1_k127_307922_2 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000000000000000000000000008896 150.0
BYD1_k127_307922_3 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000005688 137.0
BYD1_k127_3106410_0 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0 1311.0
BYD1_k127_3106410_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 6.547e-302 937.0
BYD1_k127_3106410_10 - - - - 0.0000000000000000000108 98.0
BYD1_k127_3106410_11 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000001468 94.0
BYD1_k127_3106410_12 Putative zinc- or iron-chelating domain - - - 0.00000000001981 72.0
BYD1_k127_3106410_2 ROK family K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 396.0
BYD1_k127_3106410_3 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 382.0
BYD1_k127_3106410_4 Polyprenyl synthetase K00795 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 363.0
BYD1_k127_3106410_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006537 278.0
BYD1_k127_3106410_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003081 266.0
BYD1_k127_3106410_7 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000776 211.0
BYD1_k127_3106410_8 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000003014 180.0
BYD1_k127_3106410_9 transcriptional regulators K22042 - - 0.0000000000000000000000000000000000000004468 152.0
BYD1_k127_3127681_0 COG0744 Membrane carboxypeptidase (penicillin-binding protein) K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 509.0
BYD1_k127_3127681_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006657 363.0
BYD1_k127_3127681_2 Toxic component of a toxin-antitoxin (TA) module K07171,K18841 GO:0001558,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009894,GO:0009987,GO:0010468,GO:0010608,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019219,GO:0019222,GO:0030308,GO:0031323,GO:0031329,GO:0034641,GO:0040008,GO:0043170,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0045926,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1903311 - 0.000000000000000000000000000000000000000000006124 165.0
BYD1_k127_3127681_3 SpoVT AbrB K18842 - - 0.00000000000002118 80.0
BYD1_k127_3145780_0 Aminotransferase class I and II K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 452.0
BYD1_k127_3145780_1 Prephenate dehydrogenase K00210,K00220,K04517 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0047794,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.3.1.12,1.3.1.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 416.0
BYD1_k127_3145780_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001515 259.0
BYD1_k127_3145780_3 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003829 244.0
BYD1_k127_3145780_4 chorismate mutase - - - 0.000000000000000000000000000000000000000000000000000000000001863 223.0
BYD1_k127_3145780_5 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.0000000000000000000000000000000000000000000000002555 183.0
BYD1_k127_3145780_6 Uncharacterized protein conserved in bacteria (DUF2125) - - - 0.000000000000000000000000001355 126.0
BYD1_k127_3145780_7 Protein of unknown function (DUF2652) - - - 0.0000000000000349 82.0
BYD1_k127_3254339_0 Domain of unknown function (DUF1732) - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 299.0
BYD1_k127_3254339_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001491 282.0
BYD1_k127_3254339_2 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000001203 65.0
BYD1_k127_32802_0 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000437 616.0
BYD1_k127_32802_1 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 391.0
BYD1_k127_32802_2 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 394.0
BYD1_k127_32802_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 354.0
BYD1_k127_32802_4 Predicted permease YjgP/YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 322.0
BYD1_k127_32802_5 Chaperone SurA K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008413 288.0
BYD1_k127_32802_6 LysE type translocator K06895 - - 0.00000000000000000000000000000000000000000000000000000003192 210.0
BYD1_k127_32802_7 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.000000001038 60.0
BYD1_k127_3290507_0 Protein of unknown function, DUF269 - - - 0.00000000000000000000000000000000000000000000000000000000000000001563 226.0
BYD1_k127_3290507_1 Belongs to the NifD NifK NifE NifN family K02592 - - 0.000000000000000000000000000000000000000000000000000000000000002538 222.0
BYD1_k127_3290507_2 PFAM Dinitrogenase iron-molybdenum cofactor K02596 - - 0.000000000000000000000000000000000000000000003877 168.0
BYD1_k127_3290507_3 TIGRFAM ferredoxin III - - - 0.000000000000000000000000000000000000000000506 159.0
BYD1_k127_3290507_4 Ferredoxin - - - 0.000000000000000000000000000000000002937 139.0
BYD1_k127_3290507_5 - - - - 0.0000000000000000000000000001389 121.0
BYD1_k127_3290507_6 Rop-like - - - 0.000000000000000002706 91.0
BYD1_k127_3290507_7 COG3086 Positive regulator of sigma E activity K03803 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.00000001377 63.0
BYD1_k127_3297603_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 570.0
BYD1_k127_3297603_1 Protein conserved in bacteria K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 376.0
BYD1_k127_3297603_2 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000377 171.0
BYD1_k127_3297603_3 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000003852 173.0
BYD1_k127_3297603_4 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000002529 82.0
BYD1_k127_3297603_5 response regulator K07782,K15852 - - 0.00000008262 57.0
BYD1_k127_3351572_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 6.817e-263 827.0
BYD1_k127_3351572_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 481.0
BYD1_k127_3351572_2 Peptidase inhibitor I78 family - - - 0.00002632 53.0
BYD1_k127_336161_0 Domain of unknown function (DUF4143) K07133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005104 547.0
BYD1_k127_336161_1 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 370.0
BYD1_k127_336161_2 - - - - 0.0000000000000000000137 93.0
BYD1_k127_3425920_0 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 532.0
BYD1_k127_3425920_1 PDZ DHR GLGF domain protein K11749 - - 0.0000864 56.0
BYD1_k127_34293_0 COG0643 Chemotaxis protein histidine kinase and related kinases K03407 - 2.7.13.3 2.904e-302 955.0
BYD1_k127_34293_1 FHIPEP family K02400 - - 1.402e-238 747.0
BYD1_k127_34293_10 protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000004739 198.0
BYD1_k127_34293_11 - - - - 0.0000000000000000000000000000000000000001935 169.0
BYD1_k127_34293_12 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.00000000000000000000000000000000003014 139.0
BYD1_k127_34293_13 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000003239 115.0
BYD1_k127_34293_14 Histidine phosphotransferase C-terminal domain K13588 - - 0.0000000000000000000000000007621 123.0
BYD1_k127_34293_15 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) - - - 0.00000000000000000000002273 106.0
BYD1_k127_34293_16 - - - - 0.000000000000000002346 90.0
BYD1_k127_34293_2 ATP synthase alpha/beta family, nucleotide-binding domain K02412 - 3.6.3.14 3.002e-215 677.0
BYD1_k127_34293_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 392.0
BYD1_k127_34293_4 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 370.0
BYD1_k127_34293_5 intracellular protease K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007192 334.0
BYD1_k127_34293_6 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004304 331.0
BYD1_k127_34293_7 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000212 241.0
BYD1_k127_34293_8 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000000000006179 217.0
BYD1_k127_34293_9 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000006365 198.0
BYD1_k127_3434975_0 Protein of unknown function (DUF692) K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 304.0
BYD1_k127_3434975_1 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000001674 202.0
BYD1_k127_3434975_2 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000001248 180.0
BYD1_k127_3434975_3 Protein of unknown function (DUF1109) - - - 0.000000000000000000000000000000000000007434 154.0
BYD1_k127_3434975_4 integral membrane protein - - - 0.000000000000000002603 97.0
BYD1_k127_3469097_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 8.613e-199 623.0
BYD1_k127_3469097_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000839 265.0
BYD1_k127_3469097_2 Methyltransferase K08316 - 2.1.1.171 0.000000000000000000000000000000000000000000000009527 177.0
BYD1_k127_3469097_3 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000000000000000000000000005464 159.0
BYD1_k127_3469097_5 Sulfurtransferase TusA - - - 0.000000000000000000000000000156 115.0
BYD1_k127_3478511_0 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 3.467e-311 965.0
BYD1_k127_3478511_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 7.13e-305 945.0
BYD1_k127_3478511_10 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003075 271.0
BYD1_k127_3478511_11 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000008143 248.0
BYD1_k127_3478511_12 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000000000004234 233.0
BYD1_k127_3478511_13 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000001326 229.0
BYD1_k127_3478511_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000452 203.0
BYD1_k127_3478511_15 SIS domain K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000001595 208.0
BYD1_k127_3478511_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000001214 155.0
BYD1_k127_3478511_17 FecR protein - - - 0.0000000004355 70.0
BYD1_k127_3478511_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 3.347e-238 744.0
BYD1_k127_3478511_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 2.65e-222 694.0
BYD1_k127_3478511_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.22e-211 662.0
BYD1_k127_3478511_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 561.0
BYD1_k127_3478511_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 525.0
BYD1_k127_3478511_7 NADH ubiquinone oxidoreductase, 20 Kd subunit K00331 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 329.0
BYD1_k127_3478511_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 296.0
BYD1_k127_3478511_9 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K00332 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005982 296.0
BYD1_k127_3488837_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 561.0
BYD1_k127_3488837_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 391.0
BYD1_k127_3488837_10 Response regulator receiver - - - 0.00000000000000000000000000000000000000000007067 167.0
BYD1_k127_3488837_11 chemotaxis protein - - - 0.0000000000000000000000000000000000000004823 155.0
BYD1_k127_3488837_12 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000009914 135.0
BYD1_k127_3488837_13 QueF-like protein K09457 - 1.7.1.13 0.0000000000000000000000001703 105.0
BYD1_k127_3488837_14 EamA-like transporter family - - - 0.00003749 51.0
BYD1_k127_3488837_2 KR domain K00023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818 354.0
BYD1_k127_3488837_3 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007384 320.0
BYD1_k127_3488837_4 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 321.0
BYD1_k127_3488837_5 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006982 308.0
BYD1_k127_3488837_6 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 290.0
BYD1_k127_3488837_7 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000008307 259.0
BYD1_k127_3488837_8 Polyhydroxyalkanoate synthesis repressor - - - 0.0000000000000000000000000000000000000000000000000000000000001609 221.0
BYD1_k127_3488837_9 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000003835 193.0
BYD1_k127_356023_0 DNA polymerase alpha chain like domain K02337 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0 1447.0
BYD1_k127_356023_1 Surface antigen K07277 - - 6.054e-279 878.0
BYD1_k127_356023_10 C4-dicarboxylate transporter malic acid transport protein K03304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005724 371.0
BYD1_k127_356023_11 Amino acid kinase family K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 362.0
BYD1_k127_356023_12 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 341.0
BYD1_k127_356023_13 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 302.0
BYD1_k127_356023_14 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006807,GO:0006810,GO:0008104,GO:0008150,GO:0008152,GO:0015031,GO:0015399,GO:0015405,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0022804,GO:0022857,GO:0031224,GO:0032991,GO:0033036,GO:0042157,GO:0042160,GO:0042623,GO:0042626,GO:0042886,GO:0042953,GO:0043170,GO:0043190,GO:0043492,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 294.0
BYD1_k127_356023_15 Permeases of the drug metabolite transporter DMT superfamily K15268 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 293.0
BYD1_k127_356023_16 Methyladenine glycosylase K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009016 267.0
BYD1_k127_356023_17 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009799 263.0
BYD1_k127_356023_18 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000004242 232.0
BYD1_k127_356023_19 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000009383 221.0
BYD1_k127_356023_2 Zn-dependent metallo-hydrolase RNA specificity domain K12574 - - 1.232e-202 651.0
BYD1_k127_356023_20 protein conserved in bacteria K09949 - - 0.000000000000000000000000000000000000000000000000000000000000001878 228.0
BYD1_k127_356023_21 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000000000000000000009183 217.0
BYD1_k127_356023_22 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000001722 210.0
BYD1_k127_356023_23 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000009945 192.0
BYD1_k127_356023_24 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000001086 172.0
BYD1_k127_356023_25 PAS fold - - - 0.00000000000000000000000000000000000002999 163.0
BYD1_k127_356023_26 - - - - 0.0000000000000000000000000000001085 138.0
BYD1_k127_356023_27 - - - - 0.000000000000000001331 93.0
BYD1_k127_356023_28 COG2825 Outer membrane protein - - - 0.00000004911 59.0
BYD1_k127_356023_3 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 510.0
BYD1_k127_356023_4 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 475.0
BYD1_k127_356023_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 419.0
BYD1_k127_356023_6 Udp N-acetylglucosamine O-acyltransferase; Domain 2 K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 388.0
BYD1_k127_356023_7 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 387.0
BYD1_k127_356023_8 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 372.0
BYD1_k127_356023_9 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 374.0
BYD1_k127_3611571_0 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 4.139e-281 874.0
BYD1_k127_3611571_1 HAD-hyrolase-like K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000004458 256.0
BYD1_k127_3611571_2 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000005842 233.0
BYD1_k127_3611571_3 AsmA family K07289,K07290 - - 0.0000000000000000000000000000000000000000000000000000000000000001219 247.0
BYD1_k127_3611571_4 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000001238 229.0
BYD1_k127_3611571_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000003142 79.0
BYD1_k127_3656848_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.357e-208 655.0
BYD1_k127_3656848_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007186 491.0
BYD1_k127_3656848_2 Sulfite exporter TauE/SafE K07090 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001228 274.0
BYD1_k127_3656848_3 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000002818 144.0
BYD1_k127_3656848_4 MAPEG family K07136 - - 0.00000000000000000002181 95.0
BYD1_k127_3682951_0 Protein of unknown function (DUF1538) - - - 3.764e-226 715.0
BYD1_k127_3682951_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 316.0
BYD1_k127_3682951_10 - - - - 0.000000000000001336 81.0
BYD1_k127_3682951_11 - - - - 0.0000001609 59.0
BYD1_k127_3682951_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 325.0
BYD1_k127_3682951_3 COG0642 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000511 264.0
BYD1_k127_3682951_4 COG4531 ABC-type Zn2 transport system, periplasmic component surface adhesin K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000203 230.0
BYD1_k127_3682951_5 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.000000000000000000000000000000000000000000000000000000002905 217.0
BYD1_k127_3682951_6 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.0000000000000000000000000000000000000000000000000000000187 199.0
BYD1_k127_3682951_7 Belongs to the P(II) protein family K04752 - - 0.0000000000000000000000000000000000000000000000604 177.0
BYD1_k127_3682951_8 response regulator, receiver - - - 0.00000000000000000000000006321 113.0
BYD1_k127_3682951_9 Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system K02074,K09817 - - 0.00000000000000000003814 93.0
BYD1_k127_3683268_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005839 425.0
BYD1_k127_3683268_1 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 312.0
BYD1_k127_3683268_2 Phytoene synthase K21678 - 2.5.1.103 0.000000000000000000000000000000000000000000000000000000000000000000003085 252.0
BYD1_k127_3683268_3 Squalene/phytoene synthase K21678,K21679 - 2.5.1.103,4.2.3.156 0.000000000000000000000000000000000000000000000000001711 188.0
BYD1_k127_371312_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1223.0
BYD1_k127_371312_1 Bacitracin resistance protein BacA K06153 GO:0008150,GO:0042221,GO:0046677,GO:0050896 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003358 277.0
BYD1_k127_3714374_0 Bacterial extracellular solute-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003902 520.0
BYD1_k127_3714374_1 TOBE domain K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 466.0
BYD1_k127_3714374_2 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 456.0
BYD1_k127_3714374_3 Glycerol-3-phosphate dehydrogenase K00057 GO:0003674,GO:0003824,GO:0006072,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0047952,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 335.0
BYD1_k127_3714374_4 glutamine amidotransferase K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005305 313.0
BYD1_k127_3714374_5 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000001234 200.0
BYD1_k127_3714374_6 COG1177 ABC-type spermidine putrescine transport system, permease component II K11070 - - 0.000000000000000000000000000000000000000000189 161.0
BYD1_k127_3715450_0 ABC-type multidrug transport system, ATPase and permease K06147,K11085 - - 1.345e-224 710.0
BYD1_k127_3715450_1 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253 443.0
BYD1_k127_3715450_2 protein conserved in bacteria K09778 - - 0.00000000000000000000000000000000000000000000005348 177.0
BYD1_k127_3715450_3 Zn-dependent proteases and their inactivated homologs K03592 - - 0.000000000000000000000000000000000001008 139.0
BYD1_k127_3725563_0 COG1593 TRAP-type C4-dicarboxylate transport system large permease component K11690 GO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425 - 9.062e-250 780.0
BYD1_k127_3725563_1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 492.0
BYD1_k127_3725563_2 Pfam Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009339 384.0
BYD1_k127_3725563_3 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009491 304.0
BYD1_k127_3725563_4 Phage-associated protein - - - 0.0000000000000000000000000000000000000253 148.0
BYD1_k127_3729394_0 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 336.0
BYD1_k127_3729394_1 Zinc dependent phospholipase C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 319.0
BYD1_k127_3729394_2 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000418 251.0
BYD1_k127_3729394_3 signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000008305 224.0
BYD1_k127_3729394_4 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000003737 206.0
BYD1_k127_3729394_5 Molybdopterin guanine dinucleotide synthesis protein B K03753 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000003761 193.0
BYD1_k127_3729394_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07032 - - 0.000000000000000000000000000000177 128.0
BYD1_k127_3729394_7 RelB antitoxin K07473 - - 0.00000000000000000000000000002631 121.0
BYD1_k127_3729394_8 - - - - 0.000000000000000000005138 101.0
BYD1_k127_3729394_9 Bacterial toxin of type II toxin-antitoxin system, YafQ K19157 - - 0.000004945 53.0
BYD1_k127_3761573_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 557.0
BYD1_k127_3761573_1 COG0477 Permeases of the major facilitator superfamily K07552 - - 0.00000000000001863 74.0
BYD1_k127_377134_0 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1575.0
BYD1_k127_377134_1 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000002232 118.0
BYD1_k127_3775756_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 503.0
BYD1_k127_3775756_1 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 478.0
BYD1_k127_3775756_2 Porphobilinogen deaminase, dipyromethane cofactor binding domain K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0071704,GO:0090304,GO:0098542,GO:1900865,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 374.0
BYD1_k127_3775756_3 HemY protein N-terminus K02498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000883 345.0
BYD1_k127_3775756_4 TIGRFAM RarD protein, DMT superfamily transporter K05786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000821 247.0
BYD1_k127_3775756_5 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000005379 245.0
BYD1_k127_3775756_6 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.000000000000000000000000000000000000000000000000000003628 198.0
BYD1_k127_3775756_7 Mitochondrial inner membrane protein - - - 0.00000000000000000001893 104.0
BYD1_k127_3775756_8 Flp pilus assembly protein, pilin Flp K02651 - - 0.0004016 49.0
BYD1_k127_3806666_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 7.426e-231 721.0
BYD1_k127_3806666_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 557.0
BYD1_k127_3806666_2 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008159 323.0
BYD1_k127_3806666_3 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000294 232.0
BYD1_k127_3806666_4 protein conserved in bacteria K09937 - - 0.00000000005432 64.0
BYD1_k127_3853031_0 Sporulation related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000007372 235.0
BYD1_k127_3853031_1 - - - - 0.00000000000000000000000002976 114.0
BYD1_k127_3922887_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 548.0
BYD1_k127_3922887_1 - - - - 0.0000000000000000000000000000002419 132.0
BYD1_k127_3922887_2 Cyclic nucleotide-binding domain - - - 0.0000000000000000000000000000003024 130.0
BYD1_k127_3922887_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000002671 78.0
BYD1_k127_3922887_4 - - - - 0.000000000007728 70.0
BYD1_k127_3923554_0 Pyridine nucleotide-disulphide oxidoreductase - - - 3.957e-263 828.0
BYD1_k127_3923554_1 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000002425 157.0
BYD1_k127_3923554_2 TIGRFAM HAD-superfamily subfamily IIA hydrolase like protein - - - 0.0000000000000194 80.0
BYD1_k127_3941502_0 iron-regulated membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 471.0
BYD1_k127_3941502_1 ABC transporter C-terminal domain K15738 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 372.0
BYD1_k127_3941502_10 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH K07746 - - 0.00000002877 61.0
BYD1_k127_3941502_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 365.0
BYD1_k127_3941502_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000006689 215.0
BYD1_k127_3941502_4 - - - - 0.00000000000000000000000000000000000000000000000000002002 199.0
BYD1_k127_3941502_5 COQ9 K18587 - - 0.00000000000000000000000000000000000000000000007651 177.0
BYD1_k127_3941502_6 transduction histidine kinase - - - 0.000000000000000000000000000000000000008316 161.0
BYD1_k127_3941502_7 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000002911 106.0
BYD1_k127_3941502_8 Protein of unknown function DUF86 - - - 0.000000000000000000003294 98.0
BYD1_k127_3941502_9 Nucleotidyltransferase domain K07075 - - 0.00000000000000002405 87.0
BYD1_k127_3980601_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 3.361e-262 812.0
BYD1_k127_3980601_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000002166 197.0
BYD1_k127_3980601_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000006356 149.0
BYD1_k127_3980601_3 oxygen carrier activity - - - 0.00000000000000000000000000000000001567 139.0
BYD1_k127_3980601_4 Histidine phosphatase superfamily (branch 1) K08296 - - 0.00000000000000000000000000001273 125.0
BYD1_k127_3980601_5 Ultra-violet resistance protein B K03702 - - 0.000000000000000000000003261 103.0
BYD1_k127_3980601_6 Histidine phosphatase superfamily (branch 1) K08296 - - 0.000000000000000000000664 101.0
BYD1_k127_4015563_0 phosphoenolpyruvate carboxylase activity K01595 - 4.1.1.31 8.411e-254 814.0
BYD1_k127_4015563_1 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 519.0
BYD1_k127_4015563_10 STAS domain - - - 0.0000000000000000000000001954 109.0
BYD1_k127_4015563_2 ATPases associated with a variety of cellular activities K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 383.0
BYD1_k127_4015563_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 367.0
BYD1_k127_4015563_4 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005798 304.0
BYD1_k127_4015563_5 biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003189 276.0
BYD1_k127_4015563_6 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006204 276.0
BYD1_k127_4015563_7 ABC-type transport auxiliary lipoprotein component - - - 0.0000000000000000000000000000000000000319 151.0
BYD1_k127_4015563_8 cytochrome c oxidase, subunit III K02276 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 1.9.3.1 0.000000000000000000000000000000000004639 147.0
BYD1_k127_4015563_9 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.000000000000000000000000000001022 123.0
BYD1_k127_4034425_0 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007212 586.0
BYD1_k127_4034425_1 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002091 287.0
BYD1_k127_4034425_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000002345 108.0
BYD1_k127_4052288_0 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 1.512e-308 981.0
BYD1_k127_4052288_1 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 432.0
BYD1_k127_4052288_2 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000001808 169.0
BYD1_k127_4060972_0 GTP-binding protein LepA C-terminus K03596 - - 2.351e-309 969.0
BYD1_k127_4060972_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006973 458.0
BYD1_k127_4060972_2 NnrU protein - - - 0.00000000000000000000000000000000000000000000000000000000000004056 222.0
BYD1_k127_4060972_3 Putative diguanylate phosphodiesterase - - - 0.0000000001638 68.0
BYD1_k127_4071237_0 Elongation factor G C-terminus K06207 GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 2.987e-274 853.0
BYD1_k127_4071237_1 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 443.0
BYD1_k127_4071237_2 Etoposide-induced protein 2.4 (EI24) - - - 0.0000000000000000000000000000000000000000000001873 176.0
BYD1_k127_4107264_0 Type II/IV secretion system protein K02283,K20527 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 392.0
BYD1_k127_4107264_1 Type II secretion system (T2SS), protein F K12511 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003293 274.0
BYD1_k127_4107264_2 Type II secretion system (T2SS), protein F K12510 - - 0.00000000000000000000000000000000000000000000000000000000000000000002739 243.0
BYD1_k127_4107264_3 Glycosyltransferase family 87 - - - 0.000000000000000000000000000000000453 136.0
BYD1_k127_4115554_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 3.86e-250 783.0
BYD1_k127_4115554_1 Thiol disulfide interchange protein K04084,K08344 - 1.8.1.8 1.028e-207 668.0
BYD1_k127_4115554_10 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000001464 236.0
BYD1_k127_4115554_11 Redoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000006881 217.0
BYD1_k127_4115554_12 - - - - 0.0000000000000000000000000000000000000000000000000000000000002496 233.0
BYD1_k127_4115554_13 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 0.0000000000000000000000000000000000000000000000000000002009 196.0
BYD1_k127_4115554_14 redox protein, regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000000000000001177 200.0
BYD1_k127_4115554_15 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000001263 176.0
BYD1_k127_4115554_16 - - - - 0.0000000000000000000000000000000000000000097 165.0
BYD1_k127_4115554_17 Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000000000000006667 124.0
BYD1_k127_4115554_18 effector of murein hydrolase LrgA K06518 - - 0.000000000000000000000000000003195 138.0
BYD1_k127_4115554_19 - - - - 0.000000000000000001322 96.0
BYD1_k127_4115554_2 Glycine cleavage system P-protein K00282 - 1.4.4.2 4.691e-195 617.0
BYD1_k127_4115554_20 tryptophan synthase subunit beta - - - 0.000000000000000001912 91.0
BYD1_k127_4115554_21 methylamine metabolic process K15977 - - 0.000000000001315 69.0
BYD1_k127_4115554_3 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 587.0
BYD1_k127_4115554_4 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009658 511.0
BYD1_k127_4115554_5 Glycine cleavage system T protein K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 490.0
BYD1_k127_4115554_6 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 467.0
BYD1_k127_4115554_7 effector of murein hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 304.0
BYD1_k127_4115554_8 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 285.0
BYD1_k127_4115554_9 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009019 247.0
BYD1_k127_4172780_0 Threonyl and Alanyl tRNA synthetase second additional domain K07050 GO:0000049,GO:0002161,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097159,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003262 305.0
BYD1_k127_4172780_1 Phenazine biosynthesis-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002614 276.0
BYD1_k127_4172780_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000003461 175.0
BYD1_k127_4172780_3 Sporulation related domain - - - 0.0000000000000523 77.0
BYD1_k127_4172780_4 Domain of unknown function (DUF1127) - - - 0.000003697 53.0
BYD1_k127_4202376_0 asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007123 589.0
BYD1_k127_4202376_1 Macrocin-O-methyltransferase (TylF) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000225 246.0
BYD1_k127_4202376_2 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000007705 186.0
BYD1_k127_4202376_3 Protein of unknown function (DUF616) - - - 0.000000000000000000000000000000000000000000000003066 181.0
BYD1_k127_4202376_4 Transcriptional regulator - - - 0.000000000004866 66.0
BYD1_k127_4293543_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 1.43e-213 678.0
BYD1_k127_4293543_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 476.0
BYD1_k127_4293543_10 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000000000000005434 137.0
BYD1_k127_4293543_11 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000004871 116.0
BYD1_k127_4293543_12 Cold shock K03704 - - 0.000000000000000000000001883 104.0
BYD1_k127_4293543_13 Ribosomal protein L34 K02914 - - 0.00000000000000004639 81.0
BYD1_k127_4293543_14 SNARE associated Golgi protein - - - 0.00001537 56.0
BYD1_k127_4293543_2 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 466.0
BYD1_k127_4293543_3 EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005948 468.0
BYD1_k127_4293543_4 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006812 443.0
BYD1_k127_4293543_5 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 428.0
BYD1_k127_4293543_6 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002444 289.0
BYD1_k127_4293543_7 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005752 250.0
BYD1_k127_4293543_8 Helix-turn-helix K21498 - - 0.0000000000000000000000000000000000000000000001643 168.0
BYD1_k127_4293543_9 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.00000000000000000000000000000000002749 136.0
BYD1_k127_4310598_0 Cation transporter/ATPase, N-terminus K01537,K01539 - 3.6.3.8,3.6.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 598.0
BYD1_k127_4310598_1 Universal stress protein family - - - 0.000000000000000000000000000000000000000005723 161.0
BYD1_k127_4311617_0 Major Facilitator Superfamily K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 439.0
BYD1_k127_4311617_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000009803 252.0
BYD1_k127_4311617_2 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.00000000000000000000000000000000000000000000000000000009493 199.0
BYD1_k127_4311617_3 Ribosomal protein L31 K02909 - - 0.000000000000000000000000000000000004449 138.0
BYD1_k127_4311617_4 Belongs to the frataxin family K19054 - 1.16.3.1 0.0000000000000000000000000008384 115.0
BYD1_k127_4311617_5 Protein of unknown function (DUF2892) - - - 0.00000000002599 66.0
BYD1_k127_4336956_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 461.0
BYD1_k127_4336956_1 COG2202 FOG PAS PAC domain - - - 0.0000000000000000000000000000006155 123.0
BYD1_k127_4336956_2 COG2202 FOG PAS PAC domain - - - 0.0000000000000001413 79.0
BYD1_k127_4457275_0 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 308.0
BYD1_k127_4457275_1 PFAM Enoyl-CoA hydratase isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 287.0
BYD1_k127_4457275_2 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001263 254.0
BYD1_k127_4457275_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000000000000001152 235.0
BYD1_k127_4457275_4 CoA-binding protein K06929 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000006706 130.0
BYD1_k127_4462971_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 353.0
BYD1_k127_4462971_1 acyl-CoA transferases carnitine dehydratase K07749 - 2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000002497 264.0
BYD1_k127_4462971_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001443 279.0
BYD1_k127_4462971_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000002469 241.0
BYD1_k127_4462971_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000003438 193.0
BYD1_k127_4487489_0 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.286e-231 722.0
BYD1_k127_4487489_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006712 509.0
BYD1_k127_4487489_2 fructose-bisphosphate aldolase K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003447 276.0
BYD1_k127_4487489_3 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000002032 219.0
BYD1_k127_4487489_4 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000001036 199.0
BYD1_k127_4487489_5 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000001714 157.0
BYD1_k127_4488977_0 HD domain - - - 2.645e-229 726.0
BYD1_k127_4488977_1 Glutamate-cysteine ligase family 2(GCS2) K01919 - 6.3.2.2 6.12e-211 665.0
BYD1_k127_4488977_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 395.0
BYD1_k127_4488977_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000000111 243.0
BYD1_k127_4488977_4 - - - - 0.0000000000000000000000000000269 126.0
BYD1_k127_4488977_5 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.0003504 44.0
BYD1_k127_4511907_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K21307 - 1.8.5.6 0.0 1420.0
BYD1_k127_4511907_1 4Fe-4S dicluster domain K21308 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 392.0
BYD1_k127_4511907_2 COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006095 374.0
BYD1_k127_4511907_3 DMSO reductase anchor subunit K21309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 351.0
BYD1_k127_4511907_4 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007451 331.0
BYD1_k127_4511907_5 Helix-turn-helix domain, rpiR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003194 251.0
BYD1_k127_4511907_6 HTH domain - - - 0.00000000000000000000000000000000000000000000000000000002923 205.0
BYD1_k127_4511907_7 Periplasmic binding protein domain K01999 - - 0.00000000000000000000000000000000000000008191 158.0
BYD1_k127_4525954_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005205 489.0
BYD1_k127_4525954_1 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 337.0
BYD1_k127_4525954_2 SpoU rRNA Methylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000003893 241.0
BYD1_k127_4525954_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000001459 206.0
BYD1_k127_4525954_4 invasion associated locus B - - - 0.00000000000000000000000000000000001629 141.0
BYD1_k127_4525954_5 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000001841 141.0
BYD1_k127_4525954_6 Bacterial regulatory proteins, tetR family K16137 - - 0.0000000000000000000000000000000001621 140.0
BYD1_k127_452959_0 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 386.0
BYD1_k127_452959_1 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004653 271.0
BYD1_k127_452959_2 Histidine kinase - - - 0.0000000000000000000000005833 113.0
BYD1_k127_4530154_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1043.0
BYD1_k127_4530154_1 Belongs to the GPI family K01810 - 5.3.1.9 6.636e-236 741.0
BYD1_k127_4530154_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 9.483e-200 629.0
BYD1_k127_4530154_3 4-alpha-glucanotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 611.0
BYD1_k127_4530154_4 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 583.0
BYD1_k127_4530154_5 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 541.0
BYD1_k127_4530154_6 Hydrogenase formation hypA family K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 485.0
BYD1_k127_4530154_7 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008218 490.0
BYD1_k127_4530154_8 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 304.0
BYD1_k127_4557099_0 Thioredoxin K05838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009787 292.0
BYD1_k127_4557099_1 Aminoacyl-tRNA editing domain K19055 - - 0.000000000000000000000000000000000000000000000000000003213 199.0
BYD1_k127_4557099_2 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.0000000000000000000000000000001797 126.0
BYD1_k127_4557099_3 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0000000000000000000002687 106.0
BYD1_k127_4557099_4 - - - - 0.000000002355 63.0
BYD1_k127_4559599_0 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.0 1064.0
BYD1_k127_4559599_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1023.0
BYD1_k127_4559599_2 TIGRFAM hydrogenase (NiFe) small subunit HydA K06282 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.12.99.6 3.965e-203 636.0
BYD1_k127_4559599_3 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 321.0
BYD1_k127_4559599_4 b-type cytochrome subunit K03620 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000263 214.0
BYD1_k127_4559599_5 Protein of unknown function (DUF2934) - - - 0.0000003572 56.0
BYD1_k127_4596793_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 4.914e-315 969.0
BYD1_k127_4596793_1 Belongs to the binding-protein-dependent transport system permease family K01998,K11961 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009178 557.0
BYD1_k127_4596793_2 ABC transporter, (ATP-binding protein) K11963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 365.0
BYD1_k127_4596793_3 ABC transporter K11962 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 365.0
BYD1_k127_4596793_4 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004311 274.0
BYD1_k127_4596793_5 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004548 267.0
BYD1_k127_4596793_6 Belongs to the urease beta subunit family K01430,K14048 - 3.5.1.5 0.000000000000000000000000000000000000000000000002489 184.0
BYD1_k127_4596793_7 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000004704 162.0
BYD1_k127_4598179_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 308.0
BYD1_k127_4598179_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 298.0
BYD1_k127_4598179_2 PFAM penicillin-binding protein transpeptidase K05515 - 3.4.16.4 0.0000004489 52.0
BYD1_k127_4598179_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.000001235 51.0
BYD1_k127_4617739_0 Leucyl-tRNA synthetase, Domain 2 K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 5.839e-272 851.0
BYD1_k127_4617739_1 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 337.0
BYD1_k127_4617739_2 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 331.0
BYD1_k127_4617739_3 Chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005323 244.0
BYD1_k127_4617739_4 Lipopolysaccharide-assembly K03643 - - 0.0000000000000000000000006998 113.0
BYD1_k127_4644790_0 COG1138 Cytochrome c biogenesis factor K02198 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 513.0
BYD1_k127_4644790_1 Redoxin K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000007681 228.0
BYD1_k127_4644790_2 Histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000004677 210.0
BYD1_k127_4644790_3 COG4235 Cytochrome c biogenesis factor K02200 - - 0.000000000000000000000000000000000000000000000000000005859 204.0
BYD1_k127_4644790_4 subunit of a heme lyase K02200 - - 0.00000000000000000000000000000000000000000000000002619 184.0
BYD1_k127_4644790_5 Domain of unknown function (DUF1924) - - - 0.00000000000000000000000000000000001788 139.0
BYD1_k127_4644790_6 Dihaem cytochrome c - - - 0.0000000000000000000000000000005432 127.0
BYD1_k127_4649062_0 COG0618 Exopolyphosphatase-related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 408.0
BYD1_k127_4649062_1 COG1352 Methylase of chemotaxis methyl-accepting proteins K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 405.0
BYD1_k127_4649062_2 COG0784 FOG CheY-like receiver K03413 - - 0.00000000000000000000000000000000000000000000000000000000000001407 216.0
BYD1_k127_4649062_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.0000000000000000000002319 97.0
BYD1_k127_4649062_4 ParE toxin of type II toxin-antitoxin system, parDE K19092 - - 0.000000000000000001469 90.0
BYD1_k127_4649062_5 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH - - - 0.00000000001197 68.0
BYD1_k127_4659245_0 Seryl-tRNA synthetase N-terminal domain K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005379 549.0
BYD1_k127_4659245_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 307.0
BYD1_k127_4659245_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 301.0
BYD1_k127_4659245_3 Lysin motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001094 287.0
BYD1_k127_4659245_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000002196 276.0
BYD1_k127_4659245_5 Ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005584 268.0
BYD1_k127_4659245_6 Segregation and condensation complex subunit ScpB K06024 - - 0.00000000000000000000000000000001863 132.0
BYD1_k127_4659245_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000128 109.0
BYD1_k127_4659245_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 GO:0003674,GO:0005215 - 0.0000000000000000002098 89.0
BYD1_k127_4721167_0 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 287.0
BYD1_k127_4721167_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001384 266.0
BYD1_k127_4721167_2 Macro domain - - - 0.000000000000000000000000000000000000000000000000000005596 198.0
BYD1_k127_4721167_3 Major Facilitator Superfamily K08218 - - 0.00000000000000000001582 93.0
BYD1_k127_4729066_0 Outer membrane efflux protein K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 339.0
BYD1_k127_4729066_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000003816 209.0
BYD1_k127_4729066_2 calcium- and calmodulin-responsive adenylate cyclase activity - GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000005525 172.0
BYD1_k127_4729066_3 Cadherin-like - - - 0.0000000000000000000381 107.0
BYD1_k127_4729066_4 leucine- rich repeat protein - - - 0.000000000000001024 93.0
BYD1_k127_4729066_5 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000004562 85.0
BYD1_k127_4738555_0 L-serine dehydratase K01752 GO:0003674,GO:0003824,GO:0003941,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016829,GO:0016840,GO:0016841,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575 4.3.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 556.0
BYD1_k127_4738555_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004439 434.0
BYD1_k127_4738555_2 Belongs to the TrpC family K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 380.0
BYD1_k127_4738555_3 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 356.0
BYD1_k127_4738555_4 COG0512 Anthranilate para-aminobenzoate synthases component II K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005097 301.0
BYD1_k127_4738555_5 Cache_2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001888 297.0
BYD1_k127_4738555_6 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000197 229.0
BYD1_k127_4738555_7 E1-E2 ATPase K17686,K19597 - 3.6.3.54 0.000000000000000000000000000000000000000439 154.0
BYD1_k127_4763520_0 Acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 523.0
BYD1_k127_4763520_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065,K13252 - 2.1.3.3,2.1.3.6,2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 414.0
BYD1_k127_4763520_2 4Fe-4S single cluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 397.0
BYD1_k127_4763520_3 GTP cyclohydrolase K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 317.0
BYD1_k127_4763520_4 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 302.0
BYD1_k127_4763520_5 COG0842 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000012 275.0
BYD1_k127_4763520_6 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000000000002831 196.0
BYD1_k127_4763520_7 - - - - 0.00000000000000005396 90.0
BYD1_k127_4838765_0 serine threonine protein kinase - - - 0.00000000000000000000000000000000001593 154.0
BYD1_k127_4838765_1 GGDEF domain - - - 0.0000000000000000000378 94.0
BYD1_k127_4838765_2 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.00000000000007735 72.0
BYD1_k127_4838765_3 SMART protein phosphatase 2C domain protein - - - 0.00005338 56.0
BYD1_k127_4894181_0 Flagellar hook capping protein - N-terminal region K02389 - - 0.0000000000000000000000000000000000000000000001092 176.0
BYD1_k127_4894181_1 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000001571 141.0
BYD1_k127_4894181_2 Flagellar hook-length control protein FliK K10565 - - 0.0000000000000000000003006 112.0
BYD1_k127_4894181_3 Flagellar basal body rod FlgEFG protein C-terminal K02390 - - 0.0000008066 51.0
BYD1_k127_4902243_0 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 339.0
BYD1_k127_4902243_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000008367 119.0
BYD1_k127_4902243_2 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000176 44.0
BYD1_k127_4904342_0 Belongs to the peptidase S16 family - - - 1.493e-280 887.0
BYD1_k127_4904342_1 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 596.0
BYD1_k127_4904342_2 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 345.0
BYD1_k127_4904342_3 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003007 273.0
BYD1_k127_4904342_4 Zincin-like metallopeptidase - - - 0.0000000000000000000000000000000000000000000000000006314 187.0
BYD1_k127_4904342_5 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000004899 140.0
BYD1_k127_4904342_6 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000008052 116.0
BYD1_k127_4904342_7 - - - - 0.00000000004981 67.0
BYD1_k127_4904342_8 signal transduction protein containing a membrane domain an EAL and a GGDEF domain K21023 - 2.7.7.65 0.00003972 53.0
BYD1_k127_4925277_0 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 2.32e-308 949.0
BYD1_k127_4925277_1 protein alpha chain K02586 - 1.18.6.1 1.386e-294 906.0
BYD1_k127_4925277_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001235 239.0
BYD1_k127_4925277_11 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000001594 166.0
BYD1_k127_4925277_12 transduction histidine kinase - - - 0.00000000000000000000000000000000000007914 147.0
BYD1_k127_4925277_13 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000000000000000004996 139.0
BYD1_k127_4925277_14 PFAM NifT FixU K02593 - - 0.0000000000000000000000000000435 120.0
BYD1_k127_4925277_15 4Fe-4S binding domain - - - 0.00000000000000000000000003491 108.0
BYD1_k127_4925277_16 Metal-binding - - - 0.0000000000000000000000006841 110.0
BYD1_k127_4925277_17 - - - - 0.000000000000001474 80.0
BYD1_k127_4925277_18 PFAM NifQ K15790 - - 0.0000003906 61.0
BYD1_k127_4925277_2 Nitrogenase component 1 type Oxidoreductase K02587 - - 4.029e-252 783.0
BYD1_k127_4925277_3 cofactor biosynthesis protein NifB K02585 - - 2.571e-228 719.0
BYD1_k127_4925277_4 The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components the iron protein and the molybdenum-iron protein K02588 - 1.18.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 535.0
BYD1_k127_4925277_5 SIR2-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 379.0
BYD1_k127_4925277_6 ADP-ribosyl-(Dinitrogen reductase) hydrolase K05521 - 3.2.2.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 340.0
BYD1_k127_4925277_7 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) K05951 - 2.4.2.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 339.0
BYD1_k127_4925277_8 Nitrogenase component 1 type Oxidoreductase K02592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005702 256.0
BYD1_k127_4925277_9 Dinitrogenase iron-molybdenum cofactor - - - 0.00000000000000000000000000000000000000000000000000000000000000000009187 238.0
BYD1_k127_4941099_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372,K02567 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0048037,GO:0051536,GO:0051540,GO:0055114 - 0.0 1453.0
BYD1_k127_4941099_1 N6-adenine-specific DNA methylase K07444,K12297 - 2.1.1.173,2.1.1.264 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 535.0
BYD1_k127_4941099_10 transcriptional regulator K07736 - - 0.000000000000000000000000000000000000000000000000000000000000000000002101 240.0
BYD1_k127_4941099_11 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000000000000009689 211.0
BYD1_k127_4941099_12 ferredoxin-type protein napF K02572 - - 0.0000000000000000000000000000000000000000000002346 173.0
BYD1_k127_4941099_13 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.000000000000000000000000000000000000000003969 161.0
BYD1_k127_4941099_14 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000000001959 154.0
BYD1_k127_4941099_15 Lipid A 3-O-deacylase (PagL) - - - 0.0000000000000000000000000000000001271 139.0
BYD1_k127_4941099_16 COG2202 FOG PAS PAC domain - - - 0.000000000000001163 77.0
BYD1_k127_4941099_17 NapD protein K02570 - - 0.00000000000003011 81.0
BYD1_k127_4941099_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007847 419.0
BYD1_k127_4941099_3 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 384.0
BYD1_k127_4941099_4 4Fe-4S binding domain K02574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 374.0
BYD1_k127_4941099_5 methyl-accepting chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 356.0
BYD1_k127_4941099_6 MauM NapG family ferredoxin-type protein K02573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 345.0
BYD1_k127_4941099_7 Cytochrome c-type protein K02569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003253 281.0
BYD1_k127_4941099_8 Staphylococcal nuclease homologue - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002789 268.0
BYD1_k127_4941099_9 Integral membrane protein TerC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002951 254.0
BYD1_k127_4961302_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 3.775e-197 624.0
BYD1_k127_4961302_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007298 599.0
BYD1_k127_4961302_2 COG0471 Di- and tricarboxylate transporters - - - 0.000000000000000000000000000000000000001004 150.0
BYD1_k127_4971578_0 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004695 286.0
BYD1_k127_4971578_1 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001012 250.0
BYD1_k127_4971578_2 extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase - - - 0.00000000000000000000000000000000000000000004184 175.0
BYD1_k127_4971578_3 LysE type translocator - - - 0.0000000000000000000000000000000000000002477 164.0
BYD1_k127_4971578_4 PFAM heat shock protein DnaJ domain protein - - - 0.0000000002496 72.0
BYD1_k127_4971578_5 SprA-related family - - - 0.00002305 53.0
BYD1_k127_5007189_0 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 483.0
BYD1_k127_5007189_1 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000658 439.0
BYD1_k127_5007189_2 Methyltransferase small domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001775 266.0
BYD1_k127_5007189_3 - - - - 0.00002569 47.0
BYD1_k127_5007189_4 - - - - 0.0001595 51.0
BYD1_k127_5052334_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 2.852e-211 677.0
BYD1_k127_5052334_1 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000005564 148.0
BYD1_k127_5052334_2 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.00003034 49.0
BYD1_k127_5108387_0 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001681 250.0
BYD1_k127_5108387_1 TPR repeat - - - 0.00000000000000000000000000000000000000000001058 176.0
BYD1_k127_5108387_2 ParE toxin of type II toxin-antitoxin system, parDE K19092 - - 0.000000000000000000005453 95.0
BYD1_k127_5117448_0 Ethanolamine utilisation - propanediol utilisation K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 412.0
BYD1_k127_5117448_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 328.0
BYD1_k127_5117448_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000583 278.0
BYD1_k127_5117448_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000002964 227.0
BYD1_k127_5117448_4 4'-phosphopantetheinyl transferase superfamily K00997 - 2.7.8.7 0.000000000000000000000000000000000000000000002279 169.0
BYD1_k127_5117448_5 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000006603 122.0
BYD1_k127_5117448_6 CorA-like Mg2+ transporter protein K16074 - - 0.0000000003412 61.0
BYD1_k127_5136436_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 381.0
BYD1_k127_5136436_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 374.0
BYD1_k127_5136436_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007914 333.0
BYD1_k127_5136436_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000009067 246.0
BYD1_k127_5136436_4 methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000001088 134.0
BYD1_k127_5136436_5 Dihaem cytochrome c - - - 0.0000000000000000000005277 106.0
BYD1_k127_5136436_6 Response regulator receiver K07814 - - 0.00000000000000000000504 98.0
BYD1_k127_5144400_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 6.985e-212 666.0
BYD1_k127_5144400_1 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 572.0
BYD1_k127_5144400_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 520.0
BYD1_k127_5144400_3 phosphorelay signal transduction system - - - 0.00000000000000000000000000000002268 145.0
BYD1_k127_5144400_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.000000000000000367 78.0
BYD1_k127_5146567_0 glutamine synthetase K01915 - 6.3.1.2 2.601e-244 760.0
BYD1_k127_5146567_1 belongs to the aldehyde dehydrogenase family - - - 5.171e-227 715.0
BYD1_k127_5146567_10 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000001177 124.0
BYD1_k127_5146567_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.276e-220 690.0
BYD1_k127_5146567_3 alcohol dehydrogenase K00001,K00043 - 1.1.1.1,1.1.1.61 5.248e-204 639.0
BYD1_k127_5146567_4 Bacterial extracellular solute-binding protein, family 7 - - - 2.467e-195 613.0
BYD1_k127_5146567_5 Proton-conducting membrane transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 467.0
BYD1_k127_5146567_6 Helix-turn-helix domain, rpiR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 457.0
BYD1_k127_5146567_7 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001502 268.0
BYD1_k127_5146567_8 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000000000000000000001328 247.0
BYD1_k127_5146567_9 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000009051 220.0
BYD1_k127_5151426_0 STAS domain - - - 2.096e-224 711.0
BYD1_k127_5151426_1 AAA domain K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 349.0
BYD1_k127_5151426_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000001764 135.0
BYD1_k127_5151426_3 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000000000002242 132.0
BYD1_k127_5151426_4 Dihaem cytochrome c - - - 0.000000000000000000000000008103 120.0
BYD1_k127_5151426_5 Belongs to the UPF0246 family K09861 - - 0.000000000000001053 79.0
BYD1_k127_5176382_0 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000009967 265.0
BYD1_k127_5176382_1 Diguanylate cyclase K13590 - 2.7.7.65 0.000000000000000000000000000000000000000000000000002231 192.0
BYD1_k127_5182057_0 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000002434 202.0
BYD1_k127_5182057_1 Type IV leader peptidase family K02278 - 3.4.23.43 0.0000000000000000000000000008244 121.0
BYD1_k127_5182057_2 - - - - 0.000000000000000000000007156 109.0
BYD1_k127_5182057_3 Flp Fap pilin component K02651 - - 0.000000000001713 70.0
BYD1_k127_5182057_4 Glycosyltransferase family 87 - - - 0.0000005471 52.0
BYD1_k127_5203860_0 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 3.878e-269 850.0
BYD1_k127_5203860_1 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 370.0
BYD1_k127_5203860_2 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005533 271.0
BYD1_k127_5203860_3 COG0004 Ammonia permease K03320 - - 0.00000000000000000000000000000000000000000000000004382 179.0
BYD1_k127_5203860_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000000004017 158.0
BYD1_k127_5203860_5 - - - - 0.00000000000002552 81.0
BYD1_k127_5203860_6 L,D-transpeptidase catalytic domain - - - 0.0000000000002048 71.0
BYD1_k127_5239881_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1603.0
BYD1_k127_5239881_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 3.845e-280 878.0
BYD1_k127_5239881_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 616.0
BYD1_k127_5239881_3 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005966 570.0
BYD1_k127_5239881_4 Transcription elongation factor, N-terminal K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000183 238.0
BYD1_k127_5239881_5 Yqey-like protein K09117 - - 0.000000000000000000000000000000000000000000000000009361 186.0
BYD1_k127_5239881_6 peptidyl-tyrosine sulfation - - - 0.000000000005718 66.0
BYD1_k127_5270406_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004643 368.0
BYD1_k127_5270406_1 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.0000000000000000000000006666 119.0
BYD1_k127_5273377_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 476.0
BYD1_k127_5273377_1 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058 344.0
BYD1_k127_5273377_2 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000004392 249.0
BYD1_k127_528120_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 547.0
BYD1_k127_528120_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001022 279.0
BYD1_k127_528120_2 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001284 282.0
BYD1_k127_528120_3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.00000000000000000000000000000000000000000006373 161.0
BYD1_k127_528120_4 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000002242 113.0
BYD1_k127_528120_5 Pfam:DUF1049 - - - 0.000003116 54.0
BYD1_k127_530089_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1050.0
BYD1_k127_530089_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 1.4e-315 988.0
BYD1_k127_530089_10 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000004313 199.0
BYD1_k127_530089_11 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.000000000000000000000000000000000000000000000000000272 193.0
BYD1_k127_530089_12 Belongs to the Fur family K09826 - - 0.0000000000000000000000000000000000000000000000756 173.0
BYD1_k127_530089_13 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000000003095 154.0
BYD1_k127_530089_14 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000002162 144.0
BYD1_k127_530089_15 transcriptional regulator, TetR family K16137 - - 0.00000000000000009718 83.0
BYD1_k127_530089_2 NusA-like KH domain K02600 - - 1.747e-236 742.0
BYD1_k127_530089_3 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 9.92e-218 685.0
BYD1_k127_530089_4 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005648 570.0
BYD1_k127_530089_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 367.0
BYD1_k127_530089_6 COG1592 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001218 268.0
BYD1_k127_530089_7 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005329 253.0
BYD1_k127_530089_8 Nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000001292 207.0
BYD1_k127_530089_9 Bacterial SH3 domain K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000005359 203.0
BYD1_k127_5324789_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1009.0
BYD1_k127_5324789_1 - - - - 0.000000000001354 76.0
BYD1_k127_5324789_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0008326 44.0
BYD1_k127_5380915_0 WYL domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001066 274.0
BYD1_k127_5380915_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000009665 226.0
BYD1_k127_5380915_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000005293 190.0
BYD1_k127_5380915_3 Domain of unkown function (DUF1775) - - - 0.000000000000000000000000000000000000000000005767 173.0
BYD1_k127_5380915_4 PFAM YCII-related - - - 0.0000000000000000000000000000000000000000003155 163.0
BYD1_k127_5413882_0 NiFe/NiFeSe hydrogenase small subunit C-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 463.0
BYD1_k127_5413882_1 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009015 343.0
BYD1_k127_5413882_2 HupE / UreJ protein K03192 - - 0.0000000000000000000000000000000000000000000000000000001518 202.0
BYD1_k127_5413882_3 [NiFe]-hydrogenase assembly, chaperone, HybE - - - 0.000000000000000000000000000000000000000000000000001242 196.0
BYD1_k127_5413882_4 HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.00000000000000000000000000000000000000000000000000891 196.0
BYD1_k127_5413882_5 Hydrogenase expression formation protein hupF K04653 - - 0.0000000000000000000000000002965 116.0
BYD1_k127_5413882_6 hydrogenase expression formation protein K03619 - - 0.000000000000000005611 88.0
BYD1_k127_5413882_7 Hydrogenase maturation protease K03605 GO:0003674,GO:0003824,GO:0004175,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000001986 78.0
BYD1_k127_5462441_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000586 229.0
BYD1_k127_5462441_1 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000000000000000966 201.0
BYD1_k127_5462441_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000001897 159.0
BYD1_k127_5462441_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000003744 61.0
BYD1_k127_5499301_0 reductase, alpha subunit K00394 - 1.8.99.2 2.176e-308 956.0
BYD1_k127_5499301_1 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 2.127e-241 767.0
BYD1_k127_5499301_10 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000006088 173.0
BYD1_k127_5499301_11 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 - 3.1.4.53 0.00000000000000000000000000000000000003495 153.0
BYD1_k127_5499301_12 MazG-like family - - - 0.00000000000000000000000000000368 123.0
BYD1_k127_5499301_13 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000004496 122.0
BYD1_k127_5499301_14 Belongs to the DHHC palmitoyltransferase family K20032 GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006464,GO:0006497,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009966,GO:0009987,GO:0010646,GO:0010969,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0023051,GO:0030100,GO:0031090,GO:0031137,GO:0031224,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043900,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0046999,GO:0048583,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060238,GO:0060627,GO:0061951,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1990778,GO:2000241 2.3.1.225 0.00008546 51.0
BYD1_k127_5499301_2 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 587.0
BYD1_k127_5499301_3 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005023 493.0
BYD1_k127_5499301_4 FAD dependent oxidoreductase K16885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 452.0
BYD1_k127_5499301_5 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000105 279.0
BYD1_k127_5499301_6 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000000000000000000000000000004557 228.0
BYD1_k127_5499301_7 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000001474 220.0
BYD1_k127_5499301_8 reductase, beta subunit K00395 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000005648 214.0
BYD1_k127_5499301_9 PhnA Zinc-Ribbon K06193 - - 0.00000000000000000000000000000000000000000000000000001963 189.0
BYD1_k127_5503719_0 COG2723 Beta-glucosidase 6-phospho-beta-glucosidase beta- galactosidase K05350 - 3.2.1.21 1.454e-225 705.0
BYD1_k127_5503719_1 SbmA/BacA-like family K02471 - - 3.057e-196 630.0
BYD1_k127_5503719_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 321.0
BYD1_k127_5503719_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 310.0
BYD1_k127_5503719_4 Nitric oxide-sensitive repressor of genes involved in protecting the cell against nitrosative stress. May require iron for activity K13771 - - 0.000000000000000000000000000000002829 135.0
BYD1_k127_5503719_5 Cytosol aminopeptidase family, catalytic domain K01255 - 3.4.11.1 0.000006658 50.0
BYD1_k127_5563506_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 460.0
BYD1_k127_5563506_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 410.0
BYD1_k127_5563506_2 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 362.0
BYD1_k127_5563506_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006407 267.0
BYD1_k127_5563506_4 3-dehydroquinate synthase K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000001678 200.0
BYD1_k127_5563506_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0000000000000000000000000000000000187 137.0
BYD1_k127_5597898_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 319.0
BYD1_k127_5597898_1 - - - - 0.00000000000000000000000003857 111.0
BYD1_k127_5597898_3 ergosterol biosynthetic process K02291 - 2.5.1.32,2.5.1.99 0.0000000000000001729 88.0
BYD1_k127_5633330_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 378.0
BYD1_k127_5633330_1 SMP-30/Gluconolaconase/LRE-like region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 324.0
BYD1_k127_5633330_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 319.0
BYD1_k127_5633330_3 trans-aconitate K00598 - 2.1.1.144 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001096 273.0
BYD1_k127_5633330_4 Domain of unknown function (DUF4405) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004544 261.0
BYD1_k127_5633330_5 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000001179 181.0
BYD1_k127_5778733_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 8.48e-208 654.0
BYD1_k127_5778733_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 384.0
BYD1_k127_5778733_10 Protein of unknown function (DUF1192) - - - 0.0001616 46.0
BYD1_k127_5778733_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006 385.0
BYD1_k127_5778733_3 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006723 343.0
BYD1_k127_5778733_4 protein conserved in bacteria K09987 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001808 265.0
BYD1_k127_5778733_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000795 186.0
BYD1_k127_5778733_6 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000004851 196.0
BYD1_k127_5778733_7 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 0.000000000000000000000000000000000000000001736 159.0
BYD1_k127_5778733_8 Protein of unknown function (DUF3775) - - - 0.0000000000000000000000000004501 117.0
BYD1_k127_5778733_9 cheY-homologous receiver domain - - - 0.00000000002605 66.0
BYD1_k127_5819995_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000001627 242.0
BYD1_k127_5819995_1 MOSC N-terminal beta barrel domain K07140 - - 0.000000000000000000000000000000000000000000000000006677 190.0
BYD1_k127_5819995_2 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000004425 121.0
BYD1_k127_5819995_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000002775 96.0
BYD1_k127_5819995_4 Domain of unknown function (DUF4167) - - - 0.0000000000000000000007485 104.0
BYD1_k127_5863899_0 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 389.0
BYD1_k127_5863899_1 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000000000000000008462 238.0
BYD1_k127_5863899_2 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000001579 168.0
BYD1_k127_5863899_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000000000000000001583 153.0
BYD1_k127_5863899_4 - - - - 0.0000000000000000000000000006753 120.0
BYD1_k127_5863899_5 - K02221 - - 0.0000000000000000000000002981 108.0
BYD1_k127_5863899_7 Ferredoxin - - - 0.000369 46.0
BYD1_k127_5897384_0 ABC transporter transmembrane region K12541 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 424.0
BYD1_k127_5897384_1 Type I secretion membrane fusion protein, HlyD K12542 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 361.0
BYD1_k127_5897384_2 IrrE N-terminal-like domain - - - 0.0000000000000001585 80.0
BYD1_k127_5897384_3 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00001605 55.0
BYD1_k127_5904245_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 9.277e-302 946.0
BYD1_k127_5904245_1 Aminoacyl tRNA synthetase class II, N-terminal domain K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 560.0
BYD1_k127_5904245_10 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000002975 229.0
BYD1_k127_5904245_11 Carbonic anhydrase K01673 GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0008150,GO:0008270,GO:0015976,GO:0016829,GO:0016835,GO:0016836,GO:0043167,GO:0043169,GO:0046872,GO:0046914 4.2.1.1 0.000000000000000000000000000000000000000000000000000000001824 219.0
BYD1_k127_5904245_12 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000001586 184.0
BYD1_k127_5904245_13 Rubredoxin - - - 0.000000000000000000000003172 102.0
BYD1_k127_5904245_14 COG0457 FOG TPR repeat - - - 0.00000000000000000000005108 105.0
BYD1_k127_5904245_15 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000006798 91.0
BYD1_k127_5904245_2 B3/4 domain K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005159 579.0
BYD1_k127_5904245_3 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898 481.0
BYD1_k127_5904245_4 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006118 434.0
BYD1_k127_5904245_5 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 363.0
BYD1_k127_5904245_6 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007386 321.0
BYD1_k127_5904245_7 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 290.0
BYD1_k127_5904245_8 transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 290.0
BYD1_k127_5904245_9 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000001759 240.0
BYD1_k127_5925149_0 COG2217 Cation transport ATPase K17686 - 3.6.3.54 1.157e-254 808.0
BYD1_k127_5925149_1 protein conserved in bacteria K09798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003327 269.0
BYD1_k127_5925149_2 helix_turn_helix, mercury resistance K19591 - - 0.00000000000000000000000000000000000000000000002155 184.0
BYD1_k127_5973987_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 529.0
BYD1_k127_5973987_1 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.0000000000000000000000000000000000000000000000000000000000573 213.0
BYD1_k127_5973987_2 Protein of unknown function (DUF2497) K09991 - - 0.000000000000000000000000000000000000001221 158.0
BYD1_k127_6025191_0 Vitamin B12 dependent methionine synthase, activation K00548 - 2.1.1.13 0.0 1588.0
BYD1_k127_6025191_1 HELICc2 K03722 - 3.6.4.12 3.786e-318 1011.0
BYD1_k127_6025191_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.089e-284 881.0
BYD1_k127_6025191_3 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006522 513.0
BYD1_k127_6025191_4 PFAM conserved K02069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001002 281.0
BYD1_k127_6025191_5 Uncharacterized protein family, UPF0114 - - - 0.0000000000000000000000000000000000000000000000000000000000000007605 222.0
BYD1_k127_6025191_6 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000007806 200.0
BYD1_k127_6025191_7 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000006124 165.0
BYD1_k127_6025191_8 PFAM 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.0001672 55.0
BYD1_k127_6025191_9 Hemerythrin HHE cation binding domain K07216 - - 0.0002384 51.0
BYD1_k127_607715_0 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002367 249.0
BYD1_k127_607715_1 cytochrome - - - 0.00000000000000000000000000000000000000000001198 170.0
BYD1_k127_607715_2 Domain of unknown function (DUF1924) - - - 0.00000000000000000000000000000007259 142.0
BYD1_k127_607715_3 Peptidase propeptide and ypeb - - - 0.0000000000000006955 83.0
BYD1_k127_6116108_0 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 338.0
BYD1_k127_6116108_1 ATPases associated with a variety of cellular activities K02003 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 290.0
BYD1_k127_6116108_2 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000001786 261.0
BYD1_k127_6116108_3 subfamily IA, variant 3 - - - 0.00000000000000000000000000000000000000000000000000000000000007358 219.0
BYD1_k127_6116108_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000000000696 161.0
BYD1_k127_6132339_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 3.403e-210 659.0
BYD1_k127_6132339_1 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000002626 206.0
BYD1_k127_6132339_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000002254 124.0
BYD1_k127_6169237_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 502.0
BYD1_k127_6169237_1 acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 393.0
BYD1_k127_6169237_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000003396 142.0
BYD1_k127_6169237_3 Belongs to the NadC ModD family K00767,K03813 - 2.4.2.19 0.0000000007877 64.0
BYD1_k127_6195926_0 Class II release factor RF3, C-terminal domain K02837 - - 4.014e-257 801.0
BYD1_k127_6195926_1 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.00000000000000000000000000000000000000000000000000003536 195.0
BYD1_k127_6195926_2 HD domain - - - 0.0000000000000000000000000000000000000000000000005764 188.0
BYD1_k127_6218757_0 Response regulator, receiver - - - 0.00000000000000000000000003126 122.0
BYD1_k127_6218757_1 GGDEF domain K01584,K20955 - 2.7.7.65,4.1.1.19 0.0002045 50.0
BYD1_k127_6252595_0 signal transduction histidine kinase K13587 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005402 576.0
BYD1_k127_6252595_1 FlhB HrpN YscU SpaS Family K02401 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 327.0
BYD1_k127_6252595_10 Flagellar hook-basal body K02408 - - 0.0000000006684 64.0
BYD1_k127_6252595_11 - - - - 0.00000289 57.0
BYD1_k127_6252595_12 trisaccharide binding - - - 0.0008741 42.0
BYD1_k127_6252595_2 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 296.0
BYD1_k127_6252595_3 Flagellar biosynthetic protein FliR K02421 - - 0.000000000000000000000000000000000000000000000000000006536 202.0
BYD1_k127_6252595_4 Belongs to the flagella basal body rod proteins family K02388 - - 0.0000000000000000000000000000000000000000000000000002547 187.0
BYD1_k127_6252595_5 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.00000000000000000000000000000003894 132.0
BYD1_k127_6252595_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000001737 122.0
BYD1_k127_6252595_7 Flagellar biosynthesis protein, FliO K02418 - - 0.0000000000000000000009725 99.0
BYD1_k127_6252595_8 FlhB HrpN YscU SpaS Family K04061 - - 0.000000000000000000001387 99.0
BYD1_k127_6252595_9 Flagellar biosynthetic protein FliQ K02420 - - 0.000000000000000000003659 101.0
BYD1_k127_6262774_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 4.764e-208 654.0
BYD1_k127_6262774_1 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 523.0
BYD1_k127_6262774_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 299.0
BYD1_k127_6262774_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000001038 145.0
BYD1_k127_6262774_4 ACT domain - - - 0.000000000000000000000001429 109.0
BYD1_k127_6262774_5 Dyp-type peroxidase family K07223 - - 0.000008758 48.0
BYD1_k127_6269781_0 Carboxyl transferase domain K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007015 447.0
BYD1_k127_6269781_1 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 381.0
BYD1_k127_6269781_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 324.0
BYD1_k127_6269781_3 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.0000004165 51.0
BYD1_k127_6312988_0 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.000000000000000000000000000000000000000000000000002006 183.0
BYD1_k127_6312988_1 EamA-like transporter family K15270 - - 0.0000000000000000000000000000000000000000000000001934 189.0
BYD1_k127_6312988_2 Serine hydrolase K07002 - - 0.000000000000000000000000000000000006578 140.0
BYD1_k127_6371017_0 Polysulphide reductase, NrfD K00185 - - 4.582e-211 664.0
BYD1_k127_6371017_1 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 5.471e-205 648.0
BYD1_k127_6371017_2 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009311 355.0
BYD1_k127_6371017_3 Cytochrome C1 family K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 314.0
BYD1_k127_6371017_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002596 280.0
BYD1_k127_6371017_5 Pfam Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007978 269.0
BYD1_k127_6371017_6 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000000000000002183 207.0
BYD1_k127_6371017_7 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000001058 201.0
BYD1_k127_6371017_8 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000009777 154.0
BYD1_k127_6371017_9 Cytochrome c - - - 0.00000000000000000000000000000000000003757 149.0
BYD1_k127_6394433_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1522.0
BYD1_k127_6394433_1 COG0784 FOG CheY-like receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 299.0
BYD1_k127_6394433_2 CYTH - - - 0.000000000000000000000000000000000000000000000000000000000000000000005373 249.0
BYD1_k127_6394433_3 RESPONSE REGULATOR receiver - - - 0.000000000000000000000000000000000001727 143.0
BYD1_k127_6394433_4 Putative AphA-like transcriptional regulator - - - 0.000000000000000000000000002585 114.0
BYD1_k127_6435202_0 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 419.0
BYD1_k127_6435202_1 Cold shock K03704 - - 0.0000000000000000000000000007894 114.0
BYD1_k127_645461_0 Belongs to the ABC transporter superfamily K02031,K02032,K13896 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008144,GO:0008150,GO:0015399,GO:0015405,GO:0015833,GO:0015893,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0035672,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042884,GO:0042886,GO:0042891,GO:0043167,GO:0043168,GO:0043492,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005459 552.0
BYD1_k127_645461_1 ABC transporter permease K13895 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000004379 199.0
BYD1_k127_645461_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000009803 183.0
BYD1_k127_645461_3 Belongs to the ABC transporter superfamily K13896 - - 0.0000000000000000000000000000000000000002121 155.0
BYD1_k127_6461805_0 single-stranded-DNA-specific exonuclease recJ K07462 - - 5.32e-204 649.0
BYD1_k127_6461805_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 566.0
BYD1_k127_6461805_2 Aminotransferase K14261 - - 0.00000000000000000000000000000000000000000000000000000000001664 207.0
BYD1_k127_6469411_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1242.0
BYD1_k127_6469411_1 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005777 395.0
BYD1_k127_6469411_2 (LPS) heptosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005126 330.0
BYD1_k127_6469411_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005052 323.0
BYD1_k127_6469411_4 Belongs to the GcvT family K06980,K22073 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000139 296.0
BYD1_k127_6469411_5 Methyltransferase domain - - - 0.000000000000000000000000000002961 129.0
BYD1_k127_6520994_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000008992 218.0
BYD1_k127_6520994_1 SET domain K07117 - - 0.000000000000000000000000000000000000000000000000000000000008545 210.0
BYD1_k127_6520994_2 COG2940 Proteins containing SET domain K07117 - - 0.0000000000000000000000000000000000000000000000000000004072 196.0
BYD1_k127_6520994_3 Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5- phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5- phosphonooxypentane-2,4-dione (P-HPD) K11530 GO:0002952,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016853,GO:0044424,GO:0044444,GO:0044464,GO:0055114 5.3.1.32 0.00000000000000000000000000000000000000006297 153.0
BYD1_k127_6520994_4 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000001005 130.0
BYD1_k127_6520994_5 Cytochrome c K08738 - - 0.0000000000000000000003014 99.0
BYD1_k127_6520994_6 Gaf domain - - - 0.0000000000000000001871 98.0
BYD1_k127_6520994_7 - - - - 0.000000000003016 76.0
BYD1_k127_6524702_0 Efflux pump K18138 - - 0.0 1508.0
BYD1_k127_6524702_1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 1.23e-201 638.0
BYD1_k127_6524702_10 Rhs family - - - 0.000000000000000000000000000001473 124.0
BYD1_k127_6524702_11 PAS fold - - - 0.0000000000000000000000000001722 126.0
BYD1_k127_6524702_12 - - - - 0.000000000004646 68.0
BYD1_k127_6524702_13 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 0.00000000002812 64.0
BYD1_k127_6524702_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 9.631e-198 624.0
BYD1_k127_6524702_3 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 613.0
BYD1_k127_6524702_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000586 413.0
BYD1_k127_6524702_5 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006513 345.0
BYD1_k127_6524702_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 339.0
BYD1_k127_6524702_7 NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003302 246.0
BYD1_k127_6524702_8 Uncharacterised protein family (UPF0262) - - - 0.000000000000000000000000000000000000000000000000000000000004927 212.0
BYD1_k127_6524702_9 transcriptional regulator K18301 - - 0.000000000000000000000000000000000000000003904 163.0
BYD1_k127_6569648_0 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 507.0
BYD1_k127_6569648_1 PFAM HI0933 family protein K07007 - - 0.000000000000000000000000000000000000000000000000177 179.0
BYD1_k127_6569648_2 HI0933-like protein K07007 - - 0.00000000000000000000000003163 108.0
BYD1_k127_65783_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 9.51e-262 823.0
BYD1_k127_65783_1 heme-copper terminal oxidase activity K02274 - 1.9.3.1 5.804e-243 756.0
BYD1_k127_65783_10 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.0000000000000000000000000000000000000000000000000000000002626 210.0
BYD1_k127_65783_11 Protein of unknown function (DUF2764) - - - 0.000000000000000000000000000000000000000000000000000000008346 207.0
BYD1_k127_65783_12 PFAM electron transport protein SCO1 SenC K07152 - - 0.0000000000000000000000000000000000000000000000000000001383 200.0
BYD1_k127_65783_13 - - - - 0.000000000000000000000000000000000000000000000001373 180.0
BYD1_k127_65783_14 HPP family - - - 0.0000000000000000000000000000000000000000000001402 183.0
BYD1_k127_65783_15 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.000000000000000000000000000000000001706 142.0
BYD1_k127_65783_16 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000001269 94.0
BYD1_k127_65783_17 - - - - 0.00000000002801 67.0
BYD1_k127_65783_2 PFAM ATPase, F1 V1 A1 complex, alpha beta subunit, nucleotide-binding domain K02118 - - 3.741e-225 704.0
BYD1_k127_65783_3 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006055 591.0
BYD1_k127_65783_4 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 483.0
BYD1_k127_65783_5 Phosphate transport regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 467.0
BYD1_k127_65783_6 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 341.0
BYD1_k127_65783_7 subunit c K02124 - - 0.0000000000000000000000000000000000000000000000000000000000000000009924 229.0
BYD1_k127_65783_8 PFAM Cytochrome C oxidase subunit II K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000001586 231.0
BYD1_k127_65783_9 subunit D K02120 - - 0.000000000000000000000000000000000000000000000000000000000004184 213.0
BYD1_k127_6607230_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 351.0
BYD1_k127_6607230_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 330.0
BYD1_k127_6607230_2 Nucleotidyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 333.0
BYD1_k127_6607230_3 PFAM HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009197 261.0
BYD1_k127_6607230_4 HPP family K07168 - - 0.00000000000000000000000000000000000000000000000008315 186.0
BYD1_k127_6607230_5 PFAM Filamentation induced by cAMP - - - 0.00000000000000000000001159 101.0
BYD1_k127_6608723_0 Glutamate synthase K00265 - 1.4.1.13,1.4.1.14 2.3e-322 996.0
BYD1_k127_6608723_1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 8.4e-228 715.0
BYD1_k127_6608723_2 Protein of unknown function (DUF1178) - - - 0.0000000002953 68.0
BYD1_k127_6608723_3 - - - - 0.000000008747 64.0
BYD1_k127_6649845_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 382.0
BYD1_k127_6649845_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 374.0
BYD1_k127_6649845_2 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000000000000000000000000000001921 161.0
BYD1_k127_6649845_3 Belongs to the HypD family K04654 - - 0.000000000000000000000000000000000000000373 152.0
BYD1_k127_6649845_4 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.000000000000000000000008222 102.0
BYD1_k127_6649845_5 Nickel-dependent hydrogenase - - - 0.0000000001522 69.0
BYD1_k127_6716980_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 7.048e-236 744.0
BYD1_k127_6716980_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 9.111e-226 708.0
BYD1_k127_6716980_10 - - - - 0.0000000000000000000000000000000000000000000001921 171.0
BYD1_k127_6716980_11 Aminoacyl-tRNA editing domain - - - 0.00000000000000000000000000000000000000000009279 166.0
BYD1_k127_6716980_12 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000006037 126.0
BYD1_k127_6716980_13 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00000000015 68.0
BYD1_k127_6716980_15 Glycine zipper 2TM domain - - - 0.00002251 57.0
BYD1_k127_6716980_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 572.0
BYD1_k127_6716980_3 Bacterial DNA topoisomeraes I ATP-binding domain K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006152 469.0
BYD1_k127_6716980_4 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 468.0
BYD1_k127_6716980_5 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 429.0
BYD1_k127_6716980_6 Belongs to the GST superfamily K11209 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003311 271.0
BYD1_k127_6716980_7 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000004028 258.0
BYD1_k127_6716980_8 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000005771 246.0
BYD1_k127_6716980_9 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000000001746 197.0
BYD1_k127_6835736_0 Polysaccharide biosynthesis protein K13013 - - 3.269e-233 738.0
BYD1_k127_6835736_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 462.0
BYD1_k127_6835736_2 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 421.0
BYD1_k127_6835736_3 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007687 286.0
BYD1_k127_6835736_4 Protein conserved in bacteria - - - 0.00000000000000004452 85.0
BYD1_k127_6850106_0 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006936 536.0
BYD1_k127_6850106_1 Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 349.0
BYD1_k127_6850106_2 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 321.0
BYD1_k127_6850106_3 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.00000000000000000000000000000000000000000000000000000000000000005814 225.0
BYD1_k127_6850106_4 Protein of unknown function (DUF1244) K09948 - - 0.000000000000000000000000000000000000000001502 158.0
BYD1_k127_686183_0 HAD-superfamily hydrolase, subfamily IIA K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000001494 207.0
BYD1_k127_686183_1 PFAM Excinuclease ABC, C subunit domain protein K07461 - - 0.000000000000000000000000000000000000000008699 154.0
BYD1_k127_686183_2 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH K07746 GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0046983,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0065003,GO:0071840 - 0.00000000000000000000000000000000000005101 145.0
BYD1_k127_6885174_0 TIGRFAM methylmalonic acid semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 1.143e-232 730.0
BYD1_k127_6885174_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 2.01e-204 644.0
BYD1_k127_6885174_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000001384 208.0
BYD1_k127_6892039_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.691e-204 642.0
BYD1_k127_6892039_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 516.0
BYD1_k127_6892039_10 - - - - 0.000000000000000000000000005224 120.0
BYD1_k127_6892039_11 - - - - 0.000000000002002 70.0
BYD1_k127_6892039_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 425.0
BYD1_k127_6892039_3 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 348.0
BYD1_k127_6892039_4 Amino-transferase class IV K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 333.0
BYD1_k127_6892039_5 TIGRFAM MazG family protein K02499,K04765 - 3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 319.0
BYD1_k127_6892039_6 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 294.0
BYD1_k127_6892039_7 HAD-superfamily hydrolase subfamily IA, variant 1 K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000005311 261.0
BYD1_k127_6892039_8 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000009052 225.0
BYD1_k127_6892039_9 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000000000007332 158.0
BYD1_k127_6906140_0 Class II vitamin B12-dependent ribonucleotide reductase K00525 - 1.17.4.1 0.0 1799.0
BYD1_k127_6906140_1 Belongs to the ClpA ClpB family K03694 - - 0.0 1139.0
BYD1_k127_6906140_10 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10126 - - 0.0000000000000000001512 95.0
BYD1_k127_6906140_11 Phasin protein - - - 0.0005068 49.0
BYD1_k127_6906140_2 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 447.0
BYD1_k127_6906140_3 Sporulation related domain K01286 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003687 334.0
BYD1_k127_6906140_4 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000000000000000002235 220.0
BYD1_k127_6906140_5 COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000000005036 192.0
BYD1_k127_6906140_6 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000000000000000001099 187.0
BYD1_k127_6906140_7 NADH ubiquinone oxidoreductase subunit NDUFA12 K00356 - 1.6.99.3 0.0000000000000000000000000000000000000000002592 160.0
BYD1_k127_6906140_8 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 GO:0003674,GO:0003824,GO:0004731,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016154,GO:0016740,GO:0016757,GO:0016763,GO:0044424,GO:0044444,GO:0044464 2.4.2.1,2.4.2.2 0.0000000000000000000000000000000000000007295 149.0
BYD1_k127_6906140_9 MlaD protein K02067 - - 0.000000000000000000000000000008137 125.0
BYD1_k127_6943383_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.098e-239 767.0
BYD1_k127_6943383_1 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 533.0
BYD1_k127_6943383_2 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000002062 265.0
BYD1_k127_6943383_3 May be involved in the biosynthesis of molybdopterin K03638 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464 2.7.7.75 0.00000000000004963 77.0
BYD1_k127_6974100_0 Nickel-dependent hydrogenase K05922,K06281 - 1.12.5.1,1.12.99.6 1.684e-301 932.0
BYD1_k127_6974100_1 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 394.0
BYD1_k127_6974100_2 Uncharacterized protein family UPF0016 - - - 0.000000000000000000000000000000000000000002472 159.0
BYD1_k127_6975381_0 Cation transport ATPase (P-type) K01537 - 3.6.3.8 6.944e-221 698.0
BYD1_k127_6975381_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007167 473.0
BYD1_k127_6975381_2 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 426.0
BYD1_k127_6975381_3 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005054 252.0
BYD1_k127_6975381_4 PFAM Glutathione S-transferase domain - - - 0.000000000000000000000000000000000000000000001226 171.0
BYD1_k127_6978449_0 COG1042 Acyl-CoA synthetase (NDP forming) K09181 - - 0.0 1028.0
BYD1_k127_6978449_1 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000003206 130.0
BYD1_k127_7013977_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 383.0
BYD1_k127_7013977_1 PFAM ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009928 264.0
BYD1_k127_7013977_2 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007705 251.0
BYD1_k127_7013977_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000003778 240.0
BYD1_k127_7165744_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 8.974e-279 864.0
BYD1_k127_7165744_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 4.507e-207 651.0
BYD1_k127_7165744_2 Polyphosphate kinase 2 (PPK2) - - - 3.337e-206 652.0
BYD1_k127_7165744_3 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009507 439.0
BYD1_k127_7165744_4 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 321.0
BYD1_k127_7165744_5 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000001704 274.0
BYD1_k127_7165744_6 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000002008 141.0
BYD1_k127_7165744_7 Preprotein translocase SecG subunit K03075 - - 0.000000000000000000000009343 105.0
BYD1_k127_7165744_8 - - - - 0.00000000000000000121 93.0
BYD1_k127_7165744_9 Septum formation initiator - - - 0.00000000000000005332 86.0
BYD1_k127_7252118_0 ATPase with chaperone activity K07391 - - 1.85e-211 666.0
BYD1_k127_7252118_1 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.0000001811 53.0
BYD1_k127_7280858_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300,K08301 - 3.1.26.12 2.017e-198 640.0
BYD1_k127_7280858_1 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004873 500.0
BYD1_k127_7280858_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000002963 258.0
BYD1_k127_7309248_0 ligase activity K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 519.0
BYD1_k127_7309248_1 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000004367 203.0
BYD1_k127_7309248_2 Protein of unknown function (DUF465) - - - 0.00000000000000007085 84.0
BYD1_k127_7309248_3 Protein of unknown function (DUF465) - - - 0.0000000001443 63.0
BYD1_k127_7348768_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 383.0
BYD1_k127_7348768_1 regulation of nucleic acid-templated transcription - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 319.0
BYD1_k127_7348768_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000001634 220.0
BYD1_k127_7348768_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000005846 216.0
BYD1_k127_7348768_4 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000001338 214.0
BYD1_k127_7350472_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 7.918e-259 807.0
BYD1_k127_7350472_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 437.0
BYD1_k127_7350472_2 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009271 244.0
BYD1_k127_7350472_3 LysE type translocator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007653 246.0
BYD1_k127_7350472_4 COG3143 Chemotaxis protein K03414 - - 0.00000000000000000000000000000000000000000007075 169.0
BYD1_k127_7350472_5 Stringent starvation protein B K09985 - - 0.00000000000000000000000000000000000000002745 159.0
BYD1_k127_7350472_6 TfoX N-terminal domain K07343 - - 0.00000000000000000000000000006955 119.0
BYD1_k127_7350472_7 - - - - 0.00000000000000000012 102.0
BYD1_k127_7350472_8 - - - - 0.000000008282 57.0
BYD1_k127_7350472_9 Ribbon-helix-helix domain - - - 0.00001602 51.0
BYD1_k127_7369547_0 argininosuccinate lyase K01755 - 4.3.2.1 2.371e-205 648.0
BYD1_k127_7369547_1 transduction histidine kinase - - - 1.72e-204 668.0
BYD1_k127_7369547_10 adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000009847 220.0
BYD1_k127_7369547_11 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000000009217 208.0
BYD1_k127_7369547_13 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000001148 129.0
BYD1_k127_7369547_14 - - - - 0.00000000000000001243 90.0
BYD1_k127_7369547_15 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000426 57.0
BYD1_k127_7369547_2 aminopeptidase K01262 - 3.4.11.9 4.792e-202 647.0
BYD1_k127_7369547_3 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 522.0
BYD1_k127_7369547_4 Electron transfer flavoprotein, beta subunit K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 368.0
BYD1_k127_7369547_5 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006175 366.0
BYD1_k127_7369547_6 AAA domain, putative AbiEii toxin, Type IV TA system K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 343.0
BYD1_k127_7369547_7 Acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006798 271.0
BYD1_k127_7369547_8 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007207 263.0
BYD1_k127_7369547_9 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000003376 247.0
BYD1_k127_7414232_0 Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose K06163 - 4.7.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003984 516.0
BYD1_k127_7414232_1 Bacterial phosphonate metabolism protein (PhnI) K06164 GO:0003674,GO:0003824,GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0044237,GO:0046434,GO:0061693,GO:0061694,GO:0061695,GO:0071704,GO:1901575,GO:1902494,GO:1904176,GO:1990234 2.7.8.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006719 513.0
BYD1_k127_7414232_10 Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP) K05774 - 2.7.4.23 0.00000000000000000000000000000000000000000001591 172.0
BYD1_k127_7414232_11 Phosphonate metabolism protein PhnG K06166 - 2.7.8.37 0.0000000000000000000000000000000000000004907 153.0
BYD1_k127_7414232_12 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 0.0000000000008409 68.0
BYD1_k127_7414232_2 metal-dependent hydrolase involved in phosphonate metabolism K06162 - 3.6.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 433.0
BYD1_k127_7414232_3 phosphonate C-P lyase system protein PhnK K05781 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004408 396.0
BYD1_k127_7414232_4 Amidohydrolase family K06162 - 3.6.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 403.0
BYD1_k127_7414232_5 (ABC transporter), ATP-binding K05780 - 2.7.8.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 305.0
BYD1_k127_7414232_6 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006051 294.0
BYD1_k127_7414232_7 UTRA K02043 - - 0.0000000000000000000000000000000000000000000000000000000000000000379 230.0
BYD1_k127_7414232_8 Protein of unknown function (DUF1045) - - - 0.000000000000000000000000000000000000000000000000005776 189.0
BYD1_k127_7414232_9 Bacterial phosphonate metabolism protein (PhnH) K06165 - 2.7.8.37 0.00000000000000000000000000000000000000000000021 178.0
BYD1_k127_7429134_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 5.667e-290 908.0
BYD1_k127_7429134_1 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 302.0
BYD1_k127_7429134_2 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000000000000000000000000001968 129.0
BYD1_k127_7429134_4 Flavinator of succinate dehydrogenase K09159 - - 0.00000000003266 66.0
BYD1_k127_7433875_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 4.203e-253 789.0
BYD1_k127_7433875_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 505.0
BYD1_k127_7433875_2 Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 466.0
BYD1_k127_7433875_3 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004987 292.0
BYD1_k127_7433875_4 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001277 261.0
BYD1_k127_7433875_5 - - - - 0.000000000000000000000000000000000000000000000000006523 185.0
BYD1_k127_7433875_6 bond formation protein, DsbB - - - 0.0000000000000000000000000009255 122.0
BYD1_k127_7472199_0 COG4166 ABC-type oligopeptide transport system, periplasmic component K13893 - - 6.817e-241 760.0
BYD1_k127_7472199_1 Binding-protein-dependent transport system inner membrane component K13894 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0022857,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 545.0
BYD1_k127_7472199_2 transport system, permease component K13895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 535.0
BYD1_k127_7472199_3 Belongs to the ABC transporter superfamily K13896 - - 0.000000000000000000022 94.0
BYD1_k127_7517605_0 ABC transporter K06158 - - 3.852e-251 789.0
BYD1_k127_7517605_1 Glycosyltransferase family 87 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006828 258.0
BYD1_k127_7517605_2 NDK K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000001781 229.0
BYD1_k127_7517605_3 FecR protein - - - 0.00002905 52.0
BYD1_k127_7546551_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.888e-310 969.0
BYD1_k127_7546551_1 Pterin binding enzyme K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 291.0
BYD1_k127_7546551_2 PemK-like, MazF-like toxin of type II toxin-antitoxin system - - - 0.000000000000000000000000000000000000000000000155 169.0
BYD1_k127_7546551_3 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K03431 - 5.4.2.10 0.000000001775 61.0
BYD1_k127_7546551_4 response regulator containing a CheY-like receiver - - - 0.0000008271 54.0
BYD1_k127_7579966_0 Putative modulator of DNA gyrase K03568 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 1.88e-229 718.0
BYD1_k127_7579966_1 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 516.0
BYD1_k127_7579966_2 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006876 255.0
BYD1_k127_7579966_3 Putative modulator of DNA gyrase K03592 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000001964 206.0
BYD1_k127_7580961_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 3.135e-210 670.0
BYD1_k127_7580961_1 Histidine kinase K07716 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007876 328.0
BYD1_k127_7580961_2 Aminotransferase K14261 - - 0.0000000000000000000000000000000000000000000000000000000001064 207.0
BYD1_k127_7580961_3 OmpA family - - - 0.000000000000000000000000000004547 137.0
BYD1_k127_7610122_0 Response regulator receiver K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006396 494.0
BYD1_k127_7610122_1 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 416.0
BYD1_k127_7610122_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000142 273.0
BYD1_k127_7610122_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000001714 130.0
BYD1_k127_7610122_4 COG2010 Cytochrome c, mono- and diheme variants - - - 0.000000000000000000007518 97.0
BYD1_k127_7625706_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 414.0
BYD1_k127_7625706_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 370.0
BYD1_k127_7625706_2 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008394 306.0
BYD1_k127_7625706_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000007434 226.0
BYD1_k127_7625706_4 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000009186 210.0
BYD1_k127_7625706_5 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000001955 189.0
BYD1_k127_7625706_6 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000002332 110.0
BYD1_k127_7669754_0 spermidine synthase activity K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 485.0
BYD1_k127_7669754_1 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 425.0
BYD1_k127_7669754_10 transcriptional regulators K22042 - - 0.00000000000000000000000000001731 122.0
BYD1_k127_7669754_2 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 400.0
BYD1_k127_7669754_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005638 353.0
BYD1_k127_7669754_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004673 261.0
BYD1_k127_7669754_5 Thioredoxin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000002442 211.0
BYD1_k127_7669754_6 PFAM Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000001743 200.0
BYD1_k127_7669754_7 Putative transmembrane protein (Alph_Pro_TM) - - - 0.00000000000000000000000000000000000000000000000000004245 196.0
BYD1_k127_7669754_8 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000001888 187.0
BYD1_k127_7669754_9 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000001969 149.0
BYD1_k127_7693697_0 alcohol dehydrogenase K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 495.0
BYD1_k127_7693697_1 COG3264 Small-conductance mechanosensitive channel K05802 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 370.0
BYD1_k127_7693697_2 - - - - 0.000000000000000000000000000000000000000000000000000007798 195.0
BYD1_k127_7693697_3 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000001167 64.0
BYD1_k127_7693697_4 Cytochrome c - - - 0.000001046 53.0
BYD1_k127_7701108_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.78e-241 756.0
BYD1_k127_7701108_1 AcrB/AcrD/AcrF family - - - 7.419e-239 750.0
BYD1_k127_7701108_10 DnaJ C terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000198 250.0
BYD1_k127_7701108_11 17 kDa outer membrane surface antigen - - - 0.000000000000000000000000006919 117.0
BYD1_k127_7701108_12 Rhodanese Homology Domain - - - 0.000000000000000000001003 99.0
BYD1_k127_7701108_13 Protein of unknown function (DUF2892) - - - 0.0000000000000000001468 91.0
BYD1_k127_7701108_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006375 540.0
BYD1_k127_7701108_3 Enoyl-(Acyl carrier protein) reductase K00208 GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 434.0
BYD1_k127_7701108_4 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004081 375.0
BYD1_k127_7701108_5 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009424 370.0
BYD1_k127_7701108_6 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 324.0
BYD1_k127_7701108_7 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 304.0
BYD1_k127_7701108_8 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005174 282.0
BYD1_k127_7701108_9 Virulence factor BrkB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000256 271.0
BYD1_k127_7739249_0 MotA TolQ ExbB proton channel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003552 406.0
BYD1_k127_7739249_1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 360.0
BYD1_k127_7739249_2 OmpA family K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004275 354.0
BYD1_k127_7739249_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002079 282.0
BYD1_k127_7739249_4 COG2885 outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.0000000000000000000001136 113.0
BYD1_k127_7739249_5 Major Facilitator Superfamily K08151 - - 0.0000000000000000002062 89.0
BYD1_k127_7816303_0 CoA-binding domain protein K09181 - - 1.01e-282 882.0
BYD1_k127_7816303_1 PFAM histone deacetylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008656 246.0
BYD1_k127_7822492_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 467.0
BYD1_k127_7822492_1 Bacteriophage head to tail connecting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 308.0
BYD1_k127_7822492_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000001724 224.0
BYD1_k127_7822492_3 - - - - 0.00000000000000000000000000000000001195 138.0
BYD1_k127_7822492_4 - - - - 0.00000000000000000004572 92.0
BYD1_k127_7822492_5 - - - - 0.0000001414 63.0
BYD1_k127_7829872_0 COG0477 Permeases of the major facilitator superfamily K08218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005791 495.0
BYD1_k127_7829872_1 ABC transporter K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 466.0
BYD1_k127_7829872_2 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 404.0
BYD1_k127_7829872_3 RF-1 domain K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.0000000000000000000000000000000000000000003263 162.0
BYD1_k127_7829872_4 GTP-binding protein TypA K06207 GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 0.000000000000000000000000002051 111.0
BYD1_k127_7829872_5 diguanylate cyclase - - - 0.0000000000000000000000005965 115.0
BYD1_k127_7831787_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 4.884e-220 689.0
BYD1_k127_7831787_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 514.0
BYD1_k127_7831787_2 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009346 474.0
BYD1_k127_7831787_3 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 GO:0003674,GO:0003824,GO:0004474,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046912,GO:0055114,GO:0071704,GO:0072350 2.3.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 387.0
BYD1_k127_7831787_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005592 299.0
BYD1_k127_7843082_0 TopoisomeraseII K02470 - 5.99.1.3 0.0 1205.0
BYD1_k127_7843082_1 Bacterial dnaA protein helix-turn-helix domain K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 1.059e-204 647.0
BYD1_k127_7843082_10 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 334.0
BYD1_k127_7843082_11 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 328.0
BYD1_k127_7843082_12 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000002349 226.0
BYD1_k127_7843082_13 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000000001283 206.0
BYD1_k127_7843082_14 Toxic component of a toxin-antitoxin (TA) module K07171,K18841 GO:0001558,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009894,GO:0009987,GO:0010468,GO:0010608,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019219,GO:0019222,GO:0030308,GO:0031323,GO:0031329,GO:0034641,GO:0040008,GO:0043170,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0045926,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1903311 - 0.0000000000000000000000000000000000000000003418 160.0
BYD1_k127_7843082_15 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000671 163.0
BYD1_k127_7843082_16 Bacterial regulatory proteins, tetR family K16137 - - 0.000000000000000000000000000000000000005011 151.0
BYD1_k127_7843082_17 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000001963 112.0
BYD1_k127_7843082_18 - - - - 0.000000000000000000000001668 108.0
BYD1_k127_7843082_2 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 605.0
BYD1_k127_7843082_3 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007876 524.0
BYD1_k127_7843082_4 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 511.0
BYD1_k127_7843082_5 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 506.0
BYD1_k127_7843082_6 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 471.0
BYD1_k127_7843082_7 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151 406.0
BYD1_k127_7843082_8 ThiF family K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 395.0
BYD1_k127_7843082_9 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 368.0
BYD1_k127_7876195_0 formate hydrogenlyase subunit 3 multisubunit Na H antiporter, MnhD subunit K05568,K12137 - - 2.154e-230 725.0
BYD1_k127_7876195_1 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit K00341,K05568 - 1.6.5.3 1.491e-198 629.0
BYD1_k127_7876195_2 Proton-conducting membrane transporter K00343,K05568 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 541.0
BYD1_k127_7876195_3 COG2111 Multisubunit Na H antiporter, MnhB subunit K05566 - - 0.000000000000000000000000000000000000000000000000000000000335 211.0
BYD1_k127_7876195_4 COG2111 Multisubunit Na H antiporter, MnhB subunit - - - 0.0000000000000000000000000000000000000000000000003157 180.0
BYD1_k127_7876195_5 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K05567 - - 0.000000000000000000000000000000000000000004255 158.0
BYD1_k127_7876195_6 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000001806 114.0
BYD1_k127_7876195_7 Na+/H+ antiporter subunit K05571 - - 0.00000000000000000000000003384 111.0
BYD1_k127_7876195_8 - - - - 0.00000000000000000114 89.0
BYD1_k127_7922166_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006081,GO:0006082,GO:0006091,GO:0006097,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044262,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046459,GO:0046487,GO:0046872,GO:0046914,GO:0047456,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:1901363 4.2.1.3 2.684e-318 990.0
BYD1_k127_7944018_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 1.045e-266 828.0
BYD1_k127_7944018_1 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 1.184e-248 781.0
BYD1_k127_7944018_2 Rod shape-determining protein MreB K03569 - - 1.485e-196 615.0
BYD1_k127_7944018_3 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 296.0
BYD1_k127_7944018_4 Cell cycle protein K03588,K05837 - - 0.00000000000000000000000000000000000000000004315 171.0
BYD1_k127_7944018_5 shape-determining protein K03571 - - 0.00000000000000000000000000000000000000392 164.0
BYD1_k127_7954430_0 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000002404 218.0
BYD1_k127_7954430_1 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.00000000000000000000000000000000000000000001898 174.0
BYD1_k127_7954430_2 membrane-bound lytic murein transglycosylase K08304 - - 0.00000000000000000000000000000004237 132.0
BYD1_k127_7954430_3 COG3030 Protein affecting phage T7 exclusion by the F plasmid K07113 - - 0.0000000000000000000000000018 128.0
BYD1_k127_7954430_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000000000000000005968 85.0
BYD1_k127_800668_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 2.355e-228 726.0
BYD1_k127_800668_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 458.0
BYD1_k127_800668_2 Ferredoxin, 2Fe-2S - - - 0.0000000000000000000000000000000000000000000002308 172.0
BYD1_k127_800668_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000007736 98.0
BYD1_k127_8015981_0 DNA Topoisomerase IV K02621 - - 2.284e-255 796.0
BYD1_k127_8015981_1 CorA-like Mg2+ transporter protein K03284,K16074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008832 275.0
BYD1_k127_8063742_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 436.0
BYD1_k127_8063742_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 411.0
BYD1_k127_8063742_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 328.0
BYD1_k127_8063742_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001073 253.0
BYD1_k127_8125652_0 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000002092 249.0
BYD1_k127_8125652_1 methyltransferase activity - - - 0.000000000000000000002959 105.0
BYD1_k127_8125652_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000001263 91.0
BYD1_k127_8125652_3 - - - - 0.0000000001956 64.0
BYD1_k127_8138442_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 492.0
BYD1_k127_8138442_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000001296 154.0
BYD1_k127_8138442_2 - - - - 0.000000000000000000000000000001679 129.0
BYD1_k127_8138442_3 Part of a sulfur-relay system K11179 - - 0.00000000000000000000000000003634 127.0
BYD1_k127_8173189_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 1.165e-216 682.0
BYD1_k127_8173189_1 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000006104 221.0
BYD1_k127_8173189_2 Short-chain dehydrogenase reductase sdr - - - 0.000000000000008136 88.0
BYD1_k127_8173189_3 response K18444 - - 0.000000001409 60.0
BYD1_k127_8221084_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000167 256.0
BYD1_k127_8221084_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000226 251.0
BYD1_k127_8221084_2 Chemotaxis phosphatase, CheZ K03414 - - 0.0000000000000000000000000000000002383 138.0
BYD1_k127_8221084_3 cheY-homologous receiver domain - - - 0.000000000000000000000004597 105.0
BYD1_k127_8223861_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 599.0
BYD1_k127_8223861_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 480.0
BYD1_k127_8223861_2 Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA K11392,K21970 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.178 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 298.0
BYD1_k127_8223861_3 Cation transporter/ATPase, N-terminus K01537,K01539 - 3.6.3.8,3.6.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000004342 252.0
BYD1_k127_8223861_4 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000002871 238.0
BYD1_k127_8223861_5 Belongs to the glycosyl hydrolase 18 family - - - 0.00000000000000000000000000000000000000000000000001173 195.0
BYD1_k127_8223861_6 Cold shock K03704 - - 0.000000000000000000000000002222 112.0
BYD1_k127_8236996_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009587 336.0
BYD1_k127_8236996_1 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000002242 221.0
BYD1_k127_8260937_0 SecY translocase K03076 - - 1.181e-222 696.0
BYD1_k127_8260937_1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 4.799e-218 682.0
BYD1_k127_8260937_10 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002051 272.0
BYD1_k127_8260937_11 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001319 255.0
BYD1_k127_8260937_12 Ribosomal protein L6 K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001795 250.0
BYD1_k127_8260937_13 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000002832 227.0
BYD1_k127_8260937_14 Ribosomal protein L14p/L23e K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000319 218.0
BYD1_k127_8260937_15 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000003742 213.0
BYD1_k127_8260937_16 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000006823 213.0
BYD1_k127_8260937_17 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000000000003722 210.0
BYD1_k127_8260937_18 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000000003384 194.0
BYD1_k127_8260937_19 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000004025 198.0
BYD1_k127_8260937_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 548.0
BYD1_k127_8260937_20 Ribosomal protein L22p/L17e K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000003951 183.0
BYD1_k127_8260937_21 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000000000003784 173.0
BYD1_k127_8260937_22 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000006379 170.0
BYD1_k127_8260937_23 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000004617 160.0
BYD1_k127_8260937_24 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000958 148.0
BYD1_k127_8260937_25 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000001385 145.0
BYD1_k127_8260937_26 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000004195 129.0
BYD1_k127_8260937_27 Ribosomal protein L30 K02907 - - 0.000000000000000000001091 102.0
BYD1_k127_8260937_28 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000000004961 87.0
BYD1_k127_8260937_29 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000001308 76.0
BYD1_k127_8260937_3 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 517.0
BYD1_k127_8260937_4 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003216 475.0
BYD1_k127_8260937_5 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 364.0
BYD1_k127_8260937_6 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009782 348.0
BYD1_k127_8260937_7 Adenylate kinase K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 319.0
BYD1_k127_8260937_8 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004606 291.0
BYD1_k127_8260937_9 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006633 273.0
BYD1_k127_8319173_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 - 2.3.3.9 1.042e-223 700.0
BYD1_k127_8319173_1 protein involved in response to NO K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 300.0
BYD1_k127_8319173_2 Belongs to the thioredoxin family K03671,K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000001529 168.0
BYD1_k127_8319173_3 Response regulator receiver - - - 0.00000000000000000000000001804 113.0
BYD1_k127_8319173_4 Belongs to the ompA family - - - 0.000000000000000000000000239 119.0
BYD1_k127_8319173_5 SMART Tetratricopeptide domain protein - - - 0.00000000000000001147 95.0
BYD1_k127_83213_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 538.0
BYD1_k127_83213_1 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000000000000003624 219.0
BYD1_k127_83213_2 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000007538 219.0
BYD1_k127_83213_3 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000001076 183.0
BYD1_k127_83213_4 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000002821 176.0
BYD1_k127_8324395_0 Di-haem cytochrome c peroxidase K00428 GO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005488,GO:0006091,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009061,GO:0009636,GO:0009987,GO:0010035,GO:0015980,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017144,GO:0019645,GO:0020037,GO:0022900,GO:0022904,GO:0042221,GO:0042493,GO:0042542,GO:0042743,GO:0044237,GO:0045333,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0070887,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1990748 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 361.0
BYD1_k127_8324395_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009432 344.0
BYD1_k127_8324395_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 346.0
BYD1_k127_8324395_3 - - - - 0.00000000000000000000007504 104.0
BYD1_k127_8334639_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. K07716 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000001757 270.0
BYD1_k127_8334639_1 17 kDa outer membrane surface antigen - - - 0.00000000000000000000000000000000000006687 145.0
BYD1_k127_8334639_2 COG0760 Parvulin-like peptidyl-prolyl isomerase K03769,K03771 - 5.2.1.8 0.000000000000000000000000000000002029 151.0
BYD1_k127_8334639_4 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 0.000002974 56.0
BYD1_k127_8350736_0 This protein is involved in the repair of mismatches in DNA K03555 - - 0.0 1124.0
BYD1_k127_8350736_1 malic enzyme K00029 - 1.1.1.40 0.0 1080.0
BYD1_k127_8350736_10 COG1253 Hemolysins and related proteins containing CBS domains K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008205 304.0
BYD1_k127_8350736_11 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 291.0
BYD1_k127_8350736_12 D-ala-D-ala dipeptidase K08641 - 3.4.13.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 295.0
BYD1_k127_8350736_13 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006384 269.0
BYD1_k127_8350736_14 COG0694 Thioredoxin-like proteins and domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001227 263.0
BYD1_k127_8350736_15 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001394 264.0
BYD1_k127_8350736_16 FlgJ-related protein K03796 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002525 254.0
BYD1_k127_8350736_17 cystathionine gamma-synthase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008398 256.0
BYD1_k127_8350736_18 Ferric uptake regulator family K03711 - - 0.0000000000000000000000000000000000000000000000000000000001276 207.0
BYD1_k127_8350736_19 ROS/MUCR transcriptional regulator protein - - - 0.000000000000000000000000000000000000000000000000000000001508 203.0
BYD1_k127_8350736_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.0 1039.0
BYD1_k127_8350736_20 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000000000000000000000000000000005198 207.0
BYD1_k127_8350736_21 transcriptional - - - 0.0000000000000000000000000000000000000000000000005677 182.0
BYD1_k127_8350736_22 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.000000000000000000000000000000000000000000000001643 181.0
BYD1_k127_8350736_23 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000000000003903 174.0
BYD1_k127_8350736_24 - - - - 0.00000000000000000000000000000000000006226 166.0
BYD1_k127_8350736_25 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000001726 135.0
BYD1_k127_8350736_26 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000118 120.0
BYD1_k127_8350736_27 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000000000000000001509 108.0
BYD1_k127_8350736_28 transcriptional regulators containing the CopG Arc MetJ DNA-binding domain K07746 - - 0.0000000000003611 76.0
BYD1_k127_8350736_29 ParE toxin of type II toxin-antitoxin system, parDE K19092 - - 0.0000000000008578 75.0
BYD1_k127_8350736_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.134e-198 624.0
BYD1_k127_8350736_4 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005184 586.0
BYD1_k127_8350736_5 MviN-like protein K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 559.0
BYD1_k127_8350736_6 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 500.0
BYD1_k127_8350736_7 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003143 447.0
BYD1_k127_8350736_8 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 397.0
BYD1_k127_8350736_9 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 335.0
BYD1_k127_8353526_0 UPF0313 protein - - - 0.0 1072.0
BYD1_k127_8353526_1 Killing trait - - - 0.0000000000000000000000000000000000000000000000000434 181.0
BYD1_k127_8353526_2 Killing trait - - - 0.0000000000000000000000000000000000000000000000001706 178.0
BYD1_k127_8353526_3 Killing trait - - - 0.0000000000000000000000000000001719 126.0
BYD1_k127_8353526_4 Killing trait - - - 0.000000000000000000000000000003923 121.0
BYD1_k127_8353526_5 Protein of unknown function (DUF3126) - - - 0.00000000000000000000004654 99.0
BYD1_k127_8353526_6 Killing trait - - - 0.0000000000000001743 79.0
BYD1_k127_8353526_7 Killing trait - - - 0.000000000000002274 79.0
BYD1_k127_8353526_8 - - - - 0.00000000000002694 78.0
BYD1_k127_8405919_0 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 550.0
BYD1_k127_8405919_1 LPS biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 443.0
BYD1_k127_8405919_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 297.0
BYD1_k127_8405919_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000001063 236.0
BYD1_k127_8405919_4 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000004621 143.0
BYD1_k127_8405919_5 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000006635 149.0
BYD1_k127_8473553_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 400.0
BYD1_k127_8473553_1 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 362.0
BYD1_k127_8473553_2 Putative heavy-metal-binding - - - 0.0000000000000000000000000000001257 142.0
BYD1_k127_8473553_3 Tetratricopeptide repeat - - - 0.00000000000000005089 94.0
BYD1_k127_8473553_4 Type II secretion system protein B K02451 - - 0.000004128 59.0
BYD1_k127_8478884_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 5.667e-244 765.0
BYD1_k127_8478884_1 ABC transporter K09697 - 3.6.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 311.0
BYD1_k127_8478884_2 Sodium ABC transporter permease K09696 - - 0.000000000000000000000000000000000000000000000008993 194.0
BYD1_k127_8478884_3 histidine kinase, dimerisation and phosphoacceptor region - - - 0.0000000000000000000789 94.0
BYD1_k127_8478884_4 cheY-homologous receiver domain - - - 0.0000000000000000008693 100.0
BYD1_k127_8571642_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 5.631e-279 871.0
BYD1_k127_8574506_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 2.46e-228 721.0
BYD1_k127_8574506_1 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 2.129e-223 700.0
BYD1_k127_8574506_10 Acetyltransferase (GNAT) domain - - - 0.000164 53.0
BYD1_k127_8574506_2 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 596.0
BYD1_k127_8574506_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 356.0
BYD1_k127_8574506_4 Cytochrome c, mono-and diheme variants family - - - 0.000000000000000000000000000000000000006295 149.0
BYD1_k127_8574506_5 - - - - 0.000000000000000000000000000000002189 140.0
BYD1_k127_8574506_6 - - - - 0.0000000000000000000000001223 119.0
BYD1_k127_8574506_7 Excinuclease ABC K07461 - - 0.00000000000000000000001825 102.0
BYD1_k127_8574506_8 - - - - 0.0000000000001388 76.0
BYD1_k127_8574506_9 Acetyltransferase (GNAT) family - - - 0.000000005101 67.0
BYD1_k127_8579884_0 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 415.0
BYD1_k127_8579884_1 Binding-protein-dependent transport system inner membrane component K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 336.0
BYD1_k127_8598591_0 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 - 0.00000000000000000000000000000000000000000000000000000000000000001205 228.0
BYD1_k127_8598591_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000107 207.0
BYD1_k127_8598591_2 Protein of unknown function (DUF1489) - - - 0.0000000000000000000000000000000000000001429 154.0
BYD1_k127_8598591_3 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000002286 147.0
BYD1_k127_8598591_4 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000003739 149.0
BYD1_k127_8599054_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 419.0
BYD1_k127_8599054_1 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000001563 192.0
BYD1_k127_8599054_2 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000000000000000000000000000000000003712 190.0
BYD1_k127_8599054_3 TadE-like protein - - - 0.00000000000006194 77.0
BYD1_k127_8599054_4 TadE-like protein - - - 0.000000000004981 74.0
BYD1_k127_8616282_0 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 1.48e-286 898.0
BYD1_k127_8616282_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.998e-194 615.0
BYD1_k127_8616282_10 Belongs to the SfsA family K06206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008182 310.0
BYD1_k127_8616282_11 RadC-like JAB domain K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006386 291.0
BYD1_k127_8616282_12 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001528 272.0
BYD1_k127_8616282_13 RES - - - 0.00000000000000000000000000000000000000000000000005417 186.0
BYD1_k127_8616282_14 Domain of unknown function (DUF4115) K15539 - - 0.000000000000000000000000000000000000000000000003813 188.0
BYD1_k127_8616282_15 Protein of unknown function (DUF2384) - - - 0.0000000000000000000000000000000000000000000004706 169.0
BYD1_k127_8616282_16 Protein of unknown function (DUF1178) - - - 0.00000000000000000000000000000000001354 141.0
BYD1_k127_8616282_17 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000002263 114.0
BYD1_k127_8616282_18 RelE toxin of RelE / RelB toxin-antitoxin system - - - 0.000000000000000000000000009297 115.0
BYD1_k127_8616282_19 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000002427 89.0
BYD1_k127_8616282_2 GcpE protein K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006499 571.0
BYD1_k127_8616282_3 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 534.0
BYD1_k127_8616282_4 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 410.0
BYD1_k127_8616282_5 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 392.0
BYD1_k127_8616282_6 PCRF K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000475 367.0
BYD1_k127_8616282_7 Carbon-nitrogen hydrolase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000716 355.0
BYD1_k127_8616282_8 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 350.0
BYD1_k127_8616282_9 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006589 315.0
BYD1_k127_8633023_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 519.0
BYD1_k127_8633023_1 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002475 231.0
BYD1_k127_8633023_2 helix_turn_helix ASNC type K03719 - - 0.0000000000000000000000000000000000000000000000000000001979 198.0
BYD1_k127_8633023_3 Belongs to the aldehyde dehydrogenase family K09472 - 1.2.1.99 0.000000000000000000000004926 104.0
BYD1_k127_8636811_0 Prephenate dehydratase K04518 - 4.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 366.0
BYD1_k127_8636811_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007953 340.0
BYD1_k127_8636811_2 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005286 307.0
BYD1_k127_8636811_3 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 306.0
BYD1_k127_8636811_4 Cytochrome c K08738 - - 0.0000000000000000000000000004232 123.0
BYD1_k127_8651448_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 3.255e-211 679.0
BYD1_k127_8651448_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 616.0
BYD1_k127_8651448_2 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005986 317.0
BYD1_k127_8651448_3 ATP synthase subunit D K02120 - - 0.0000000000000000000000000001572 123.0
BYD1_k127_8651448_4 Belongs to the V-ATPase proteolipid subunit family K02124 - - 0.000000000000000000000006513 111.0
BYD1_k127_8651448_5 - - - - 0.00000000000000000003756 101.0
BYD1_k127_8651448_6 ATP synthase (F/14-kDa) subunit - - - 0.00000000000001498 77.0
BYD1_k127_8725688_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K01665 - 2.6.1.85,4.1.3.27 1.006e-200 636.0
BYD1_k127_8725688_1 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 425.0
BYD1_k127_8725688_2 Ceramidase - - - 0.0000000000000000000000000000000000000000000000000003049 193.0
BYD1_k127_8725688_3 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000002 124.0
BYD1_k127_8725688_4 Histidine kinase - - - 0.0000000001047 69.0
BYD1_k127_8818933_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1236.0
BYD1_k127_8818933_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 335.0
BYD1_k127_8818933_2 HupE / UreJ protein K03192 - - 0.00000000000000000000000000000000000000000000000000000000000001871 220.0
BYD1_k127_8818933_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000000004098 147.0
BYD1_k127_8890469_0 Ultra-violet resistance protein B K03702 - - 0.0 1085.0
BYD1_k127_8890469_1 DegT/DnrJ/EryC1/StrS aminotransferase family K00812 - 2.6.1.1 4.506e-202 636.0
BYD1_k127_8890469_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004625 243.0
BYD1_k127_8890469_3 Histidine phosphatase superfamily (branch 1) K08296 - - 0.0000000000000004998 82.0
BYD1_k127_9006356_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 9.831e-213 670.0
BYD1_k127_9006356_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 475.0
BYD1_k127_9006356_10 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001662 296.0
BYD1_k127_9006356_11 Riboflavin synthase alpha chain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000001943 266.0
BYD1_k127_9006356_12 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000000001716 229.0
BYD1_k127_9006356_13 COG0698 Ribose 5-phosphate isomerase RpiB K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000004334 196.0
BYD1_k127_9006356_14 Two component signalling adaptor domain K03408 - - 0.000000000000000000000000000000000000000000000000000005232 196.0
BYD1_k127_9006356_15 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA - - - 0.000000000000000000000000000000000000000000000009614 181.0
BYD1_k127_9006356_16 hyperosmotic response - - - 0.0000000000000000000000001256 114.0
BYD1_k127_9006356_17 PFAM flavin reductase K16048 - - 0.00000000000861 66.0
BYD1_k127_9006356_18 - - - - 0.000000009909 60.0
BYD1_k127_9006356_2 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 458.0
BYD1_k127_9006356_3 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 433.0
BYD1_k127_9006356_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 414.0
BYD1_k127_9006356_5 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 383.0
BYD1_k127_9006356_6 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 374.0
BYD1_k127_9006356_7 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 363.0
BYD1_k127_9006356_8 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 370.0
BYD1_k127_9006356_9 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006442 321.0
BYD1_k127_905638_0 Protein export membrane protein K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 461.0
BYD1_k127_905638_1 ATPase (AAA K06923 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 419.0
BYD1_k127_905638_2 Preprotein translocase subunit YajC K03210 - - 0.00000000000000000000000000000000000001927 148.0
BYD1_k127_9104523_0 COG0226 ABC-type phosphate transport system, periplasmic component K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005544 477.0
BYD1_k127_9104523_1 signal transduction histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 355.0
BYD1_k127_9104523_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002182 274.0
BYD1_k127_9104523_3 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000007104 207.0
BYD1_k127_9104523_4 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000005945 95.0
BYD1_k127_9104523_5 transcriptional - - - 0.000000003952 63.0
BYD1_k127_9136241_0 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000000000003098 194.0
BYD1_k127_9136241_1 Winged helix DNA-binding domain - - - 0.000000000000000000000000000000000000000177 169.0
BYD1_k127_918719_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 537.0
BYD1_k127_9203292_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 1.786e-244 773.0
BYD1_k127_9203292_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007989 521.0
BYD1_k127_9203292_2 COG0303 Molybdopterin biosynthesis enzyme K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003234 447.0
BYD1_k127_9203292_3 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000979 319.0
BYD1_k127_9203292_4 CDP-alcohol phosphatidyltransferase K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000003059 232.0
BYD1_k127_9203292_5 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000007056 212.0
BYD1_k127_9203292_6 Protein conserved in bacteria K09798 - - 0.00000000000000000000000000000000000000000000000000215 203.0
BYD1_k127_9203292_7 COG4942 Membrane-bound metallopeptidase - - - 0.000000000000000000000000000000000000000000000003197 179.0
BYD1_k127_9203292_8 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000001469 156.0
BYD1_k127_9212868_0 Histidine kinase K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 457.0
BYD1_k127_9212868_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002805 420.0
BYD1_k127_9212868_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002865 276.0
BYD1_k127_9212868_3 transcriptional - - - 0.0000000000000000000000000000000000000000000000000000162 193.0
BYD1_k127_9225523_0 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K11959 - - 1.483e-233 726.0
BYD1_k127_9225523_1 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 501.0
BYD1_k127_9225523_2 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 353.0
BYD1_k127_9225523_3 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 335.0
BYD1_k127_9225523_4 Belongs to the arginase family K01480 - 3.5.3.11 0.000000000000000000000000000000000000000000000004187 177.0
BYD1_k127_9293970_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 7.27e-317 977.0
BYD1_k127_9293970_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008692 535.0
BYD1_k127_9293970_2 Isocitrate/isopropylmalate dehydrogenase K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008244 518.0
BYD1_k127_9293970_3 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 452.0
BYD1_k127_9293970_4 AFG1-like ATPase K06916 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 434.0
BYD1_k127_9293970_5 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009309 325.0
BYD1_k127_9293970_6 lactate/malate dehydrogenase, NAD binding domain K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000001135 226.0
BYD1_k127_9293970_7 COG0784 FOG CheY-like receiver - - - 0.00000000000000000000000000000000000000000000000003758 183.0
BYD1_k127_9293970_8 Succinate dehydrogenase Fumarate reductase K00241 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000004232 158.0
BYD1_k127_9293970_9 succinate dehydrogenase K00242 - - 0.0000000000000000000000000000000002406 136.0
BYD1_k127_9383251_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 391.0
BYD1_k127_9383251_1 DoxX K15977 - - 0.0000000000000000000000000000000000000000225 156.0
BYD1_k127_9383251_2 Membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.0000000000000000000001494 111.0
BYD1_k127_9383251_3 Putative DNA-binding domain - - - 0.000000000000742 72.0
BYD1_k127_9383251_4 Glucose / Sorbosone dehydrogenase - - - 0.00002742 54.0
BYD1_k127_9413751_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009588 608.0
BYD1_k127_9413751_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 301.0
BYD1_k127_9413751_2 Mitochondrial fission ELM1 K07276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006157 265.0
BYD1_k127_9413751_3 Hemimethylated DNA-binding protein YccV like K11940 - - 0.000000000000000000000006447 105.0
BYD1_k127_9586311_0 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 1.448e-231 720.0
BYD1_k127_9586311_1 Phosphatidylserine decarboxylase K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005915 314.0
BYD1_k127_9586311_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 300.0
BYD1_k127_9586311_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 292.0
BYD1_k127_9586311_4 Lysin motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009798 282.0
BYD1_k127_9586311_5 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000001832 205.0
BYD1_k127_9586311_6 AcrB/AcrD/AcrF family K18989 - - 0.00000000000000000000000000000000000000000000000000000008008 198.0
BYD1_k127_9586311_7 Cytochrome C' - - - 0.00000000000000000002184 100.0
BYD1_k127_9586311_8 TK COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000987 48.0
BYD1_k127_9595953_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K12256 - 2.6.1.113 2.365e-211 664.0
BYD1_k127_9595953_1 glutamine synthetase K01915 - 6.3.1.2 1.538e-195 625.0
BYD1_k127_9595953_10 Gamma-glutamyltransferase - - - 0.0004035 45.0
BYD1_k127_9595953_2 Required for the activity of the bacterial periplasmic transport system of putrescine K11073 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0019808,GO:0019810,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0051179,GO:0051234,GO:0070405,GO:0071702,GO:0071705 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 546.0
BYD1_k127_9595953_3 oxidoreductase K09471 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 531.0
BYD1_k127_9595953_4 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 521.0
BYD1_k127_9595953_5 Part of the ABC transporter complex potABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 503.0
BYD1_k127_9595953_6 ABC-type spermidine putrescine transport system, permease component I K11075 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 439.0
BYD1_k127_9595953_7 ABC-type spermidine putrescine transport system, permease component II K11074 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008819 400.0
BYD1_k127_9595953_8 Gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 310.0
BYD1_k127_9595953_9 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000001548 65.0
BYD1_k127_9606281_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 1.042e-218 688.0
BYD1_k127_9606281_1 COG0768 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 5.012e-194 621.0
BYD1_k127_9606281_10 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 411.0
BYD1_k127_9606281_11 Cell division protein FtsQ K03589 - - 0.000000000000000000000000000000000000000000000000000000000006478 218.0
BYD1_k127_9606281_12 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000001566 202.0
BYD1_k127_9606281_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006921 565.0
BYD1_k127_9606281_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 537.0
BYD1_k127_9606281_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 476.0
BYD1_k127_9606281_5 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005997 473.0
BYD1_k127_9606281_6 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 453.0
BYD1_k127_9606281_7 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006694 453.0
BYD1_k127_9606281_8 D-ala D-ala ligase N-terminus K00075,K01921 - 1.3.1.98,6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008325 422.0
BYD1_k127_9606281_9 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 415.0
BYD1_k127_9700986_0 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 551.0
BYD1_k127_9700986_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 364.0
BYD1_k127_9700986_2 Belongs to the BI1 family K06890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 291.0
BYD1_k127_9700986_3 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004166 267.0
BYD1_k127_9700986_4 DnaJ-class molecular chaperone - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008758 248.0
BYD1_k127_9729441_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 297.0
BYD1_k127_9729441_1 - - - - 0.00000000000000000000000000000000000000000000000002034 183.0
BYD1_k127_9729441_2 - - - - 0.0000000001108 69.0
BYD1_k127_9729441_3 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.00007461 51.0
BYD1_k127_976682_0 COG0840 Methyl-accepting chemotaxis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 541.0
BYD1_k127_976682_1 3'(2'),5'-bisphosphate nucleotidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007758 472.0
BYD1_k127_976682_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008104 380.0
BYD1_k127_976682_3 COG0840 Methyl-accepting chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000000000002564 218.0
BYD1_k127_9798237_0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 4.903e-206 647.0
BYD1_k127_9798237_1 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000000000000000004178 220.0
BYD1_k127_9798237_2 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000003624 143.0
BYD1_k127_9798237_4 - - - - 0.000000005514 59.0
BYD1_k127_9814810_0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 8.997e-263 819.0
BYD1_k127_9814810_1 PAS PAC domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 606.0
BYD1_k127_9814810_2 reductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 473.0
BYD1_k127_9814810_3 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 346.0
BYD1_k127_9814810_4 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000478 287.0
BYD1_k127_9814810_5 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000000000000373 177.0
BYD1_k127_9814810_6 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.000000000000000648 78.0
BYD1_k127_9814810_7 Cytochrome c - - - 0.000000000000004003 86.0
BYD1_k127_9836912_0 RecF/RecN/SMC N terminal domain K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 432.0
BYD1_k127_9836912_1 ATP synthase A chain K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 345.0
BYD1_k127_9836912_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000002869 126.0
BYD1_k127_9836912_3 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042802,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000007115 102.0
BYD1_k127_9836912_4 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000000000000002749 99.0
BYD1_k127_9836912_5 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000004549 101.0
BYD1_k127_9848407_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007402 310.0
BYD1_k127_9848407_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 302.0
BYD1_k127_9848407_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000000000000003356 184.0
BYD1_k127_9848407_3 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000000002257 150.0
BYD1_k127_9848407_4 - - - - 0.0000000000003103 76.0
BYD1_k127_9852788_0 Protein of unknown function (DUF3050) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 305.0
BYD1_k127_9852788_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007487 289.0
BYD1_k127_9852788_2 iron ion homeostasis - - - 0.00000000000000000000000000000000000000000771 165.0
BYD1_k127_9852788_3 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000000000000000000002256 140.0
BYD1_k127_9902741_0 MacB-like periplasmic core domain K02004 - - 2.905e-228 752.0
BYD1_k127_9902741_1 HlyD family secretion protein K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003535 375.0
BYD1_k127_9902741_2 Outer membrane efflux protein K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 364.0
BYD1_k127_9902741_3 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005671 328.0
BYD1_k127_9902741_4 COG1076 DnaJ-domain-containing proteins 1 K05801 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 300.0
BYD1_k127_9902741_5 COG3023 Negative regulator of beta-lactamase expression K01447 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009672 283.0
BYD1_k127_9902741_6 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000009665 226.0
BYD1_k127_9902741_7 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000000000000000376 222.0
BYD1_k127_9902741_8 - - - - 0.00000000000000000000001288 106.0
BYD1_k127_9902741_9 Sel1 repeat - - - 0.00000001167 66.0
BYD1_k127_9964714_0 Modulates RecA activity K03565 - - 0.00000000000000000000000000000000000000000000000000000009924 201.0
BYD1_k127_9964714_1 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000006654 165.0
BYD1_k127_9964714_2 arsenate reductase K00537 - 1.20.4.1 0.000000000000000000000000000000000001052 145.0
BYD1_k127_9964714_3 Cache domain K03406 - - 0.00000000000000000006486 91.0
BYD1_k127_9971424_0 Cobaltochelatase CobS subunit N terminal K09882 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006511 545.0
BYD1_k127_9971424_1 SMART von Willebrand factor type A K09883 - 6.6.1.2 0.00000000000000000000000000000000000000000000001324 184.0
BYD1_k127_9971424_2 DnaJ molecular chaperone homology domain - - - 0.00000000000000000000000000000000000000000006207 166.0
BYD1_k127_9971424_3 BolA-like protein K05527,K22066 GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0071704,GO:0097428,GO:0106035,GO:1901564 - 0.0000000000415 64.0