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Overview

ID MAG00034
Name BYD1_bin.49
Sample SMP0001
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Rhodocyclaceae
Genus Fen-999
Species
Assembly information
Completeness (%) 90.49
Contamination (%) 3.35
GC content (%) 65.0
N50 (bp) 21,049
Genome size (bp) 3,228,184

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3188

Gene name Description KEGG GOs EC E-value Score Sequence
BYD1_k127_10022931_0 Elongator protein 3, MiaB family, Radical SAM - - - 1.033e-266 830.0
BYD1_k127_10022931_1 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 2.46e-265 852.0
BYD1_k127_10022931_10 ABC-2 type transporter K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 343.0
BYD1_k127_10022931_11 riboflavin synthase alpha K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001142 273.0
BYD1_k127_10022931_12 hydrolase of the alpha beta superfamily K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003237 271.0
BYD1_k127_10022931_13 VanZ like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001943 268.0
BYD1_k127_10022931_14 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000001097 204.0
BYD1_k127_10022931_15 lipid carrier protein - - - 0.0000000000000000000000000000000000000000000000008053 183.0
BYD1_k127_10022931_16 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000009403 170.0
BYD1_k127_10022931_17 ferredoxin - - - 0.0000000000000000000000000000000000000000000608 162.0
BYD1_k127_10022931_18 protein involved in tolerance to divalent cations K03926 - - 0.000000000000000000000000000000000000000003659 156.0
BYD1_k127_10022931_19 response to cobalt ion - - - 0.000000000000000000000000000000000000000003695 161.0
BYD1_k127_10022931_2 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 1.54e-220 701.0
BYD1_k127_10022931_20 Nucleotide pyrophosphohydrolase - - - 0.0000000000000000000000000000000000006632 141.0
BYD1_k127_10022931_21 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000003169 68.0
BYD1_k127_10022931_3 PFAM ATPase associated with various cellular activities, AAA-4 - - - 8.158e-203 660.0
BYD1_k127_10022931_4 Peptidase U32 K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 578.0
BYD1_k127_10022931_5 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004287 538.0
BYD1_k127_10022931_6 response regulator receiver K07814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 500.0
BYD1_k127_10022931_7 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 390.0
BYD1_k127_10022931_8 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 372.0
BYD1_k127_10022931_9 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 353.0
BYD1_k127_10023814_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1120.0
BYD1_k127_10023814_1 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1114.0
BYD1_k127_10023814_10 With GlrK is part of a two-component signal transduction system regulating glmY K07715 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 409.0
BYD1_k127_10023814_11 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 395.0
BYD1_k127_10023814_12 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 337.0
BYD1_k127_10023814_13 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 348.0
BYD1_k127_10023814_14 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 330.0
BYD1_k127_10023814_15 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 295.0
BYD1_k127_10023814_16 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006254 291.0
BYD1_k127_10023814_17 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004141 299.0
BYD1_k127_10023814_18 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000913 285.0
BYD1_k127_10023814_19 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005892 284.0
BYD1_k127_10023814_2 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.833e-299 925.0
BYD1_k127_10023814_20 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000001118 263.0
BYD1_k127_10023814_21 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004132 264.0
BYD1_k127_10023814_22 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006526 244.0
BYD1_k127_10023814_23 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000002471 183.0
BYD1_k127_10023814_24 AsmA-like C-terminal region - - - 0.0000000000000000000000000000000000000000000000000348 199.0
BYD1_k127_10023814_25 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000000000000000001609 159.0
BYD1_k127_10023814_26 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000000000005117 154.0
BYD1_k127_10023814_27 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000005533 150.0
BYD1_k127_10023814_28 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000000000004626 141.0
BYD1_k127_10023814_29 protein conserved in bacteria - - - 0.00000000000000000000000000000000001642 140.0
BYD1_k127_10023814_3 diguanylate cyclase - - - 2.082e-293 930.0
BYD1_k127_10023814_30 Domain of unknown function (DUF4845) - - - 0.000000000000000000000007139 106.0
BYD1_k127_10023814_33 - - - - 0.0000003463 54.0
BYD1_k127_10023814_4 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 4.954e-238 751.0
BYD1_k127_10023814_5 Aminotransferase K00832 - 2.6.1.57 9.752e-203 646.0
BYD1_k127_10023814_6 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 464.0
BYD1_k127_10023814_7 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 427.0
BYD1_k127_10023814_8 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 419.0
BYD1_k127_10023814_9 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 414.0
BYD1_k127_1004505_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.0 1092.0
BYD1_k127_1004505_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 419.0
BYD1_k127_1004505_2 - - - - 0.0000000000000003219 81.0
BYD1_k127_10103874_0 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 330.0
BYD1_k127_10103874_1 binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000000000000000000000000000007785 213.0
BYD1_k127_10103874_2 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000000000000000000007829 205.0
BYD1_k127_10103874_3 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000000000000000000000131 155.0
BYD1_k127_10103874_4 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.000000000000000004379 88.0
BYD1_k127_10112744_0 Tripartite ATP-independent periplasmic transporter, DctM component K11690 - - 4.636e-240 745.0
BYD1_k127_10112744_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 1.789e-228 713.0
BYD1_k127_10112744_10 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 571.0
BYD1_k127_10112744_11 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006172 531.0
BYD1_k127_10112744_12 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 511.0
BYD1_k127_10112744_13 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 451.0
BYD1_k127_10112744_14 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008381 428.0
BYD1_k127_10112744_15 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 427.0
BYD1_k127_10112744_16 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 419.0
BYD1_k127_10112744_17 Oxidoreductase FAD-binding domain K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 410.0
BYD1_k127_10112744_18 chemotaxis K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 408.0
BYD1_k127_10112744_19 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component K11689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 381.0
BYD1_k127_10112744_2 His Kinase A (phosphoacceptor) domain K11711 - 2.7.13.3 1.539e-219 716.0
BYD1_k127_10112744_20 Domain of unknown function (DUF2437) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 353.0
BYD1_k127_10112744_21 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 349.0
BYD1_k127_10112744_22 DSBA Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000198 278.0
BYD1_k127_10112744_23 RNA pseudouridylate synthase K06177 - 5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002279 272.0
BYD1_k127_10112744_24 response regulator K11712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005434 265.0
BYD1_k127_10112744_25 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000005565 262.0
BYD1_k127_10112744_26 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000001925 252.0
BYD1_k127_10112744_27 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003829 244.0
BYD1_k127_10112744_28 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000002972 238.0
BYD1_k127_10112744_29 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000001689 248.0
BYD1_k127_10112744_3 histidyl-tRNA synthetase K01892 - 6.1.1.21 1.188e-208 655.0
BYD1_k127_10112744_30 phosphoglycerate mutase K15634 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000003033 223.0
BYD1_k127_10112744_31 type 4 pilus biogenesis protein K02656 - - 0.000000000000000000000000000000000000000000000000000000000000008835 224.0
BYD1_k127_10112744_32 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000006057 190.0
BYD1_k127_10112744_33 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000002322 170.0
BYD1_k127_10112744_34 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000000000002931 152.0
BYD1_k127_10112744_35 Domain of unknown function (DUF4115) K15539 - - 0.0000000000000000000000000000000000000001325 162.0
BYD1_k127_10112744_36 Phosphate-starvation-inducible E - - - 0.00000000000000000000000000915 113.0
BYD1_k127_10112744_37 Nuclear protein SET K07117 - - 0.0000000000000000000000003095 111.0
BYD1_k127_10112744_39 protein conserved in bacteria K09937 - - 0.000000000000000003612 88.0
BYD1_k127_10112744_4 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 4.166e-199 628.0
BYD1_k127_10112744_40 RNA-binding protein K14761 - - 0.00000000000000003238 84.0
BYD1_k127_10112744_5 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 2.472e-196 619.0
BYD1_k127_10112744_6 TIGRFAM SagB-type dehydrogenase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 599.0
BYD1_k127_10112744_7 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 588.0
BYD1_k127_10112744_8 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 585.0
BYD1_k127_10112744_9 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 579.0
BYD1_k127_10154207_0 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.0 1172.0
BYD1_k127_10154207_1 PFAM Glycoside hydrolase 15-related - - - 3.388e-308 951.0
BYD1_k127_10154207_10 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 306.0
BYD1_k127_10154207_11 Major Facilitator Superfamily - - - 0.000000000000000000000000002398 126.0
BYD1_k127_10154207_12 Protein of unknown function (DUF3124) - - - 0.0000000000000000000000001486 122.0
BYD1_k127_10154207_2 Sodium/hydrogen exchanger family K03455 - - 4.79e-202 644.0
BYD1_k127_10154207_3 Protein of unknown function (DUF475) K09799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 422.0
BYD1_k127_10154207_4 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 418.0
BYD1_k127_10154207_5 PFAM sodium hydrogen exchanger - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007054 400.0
BYD1_k127_10154207_6 LysR substrate binding domain K03717 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005607 386.0
BYD1_k127_10154207_7 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 341.0
BYD1_k127_10154207_8 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 312.0
BYD1_k127_10154207_9 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 314.0
BYD1_k127_10238823_0 Glutathione S-transferase, C-terminal domain K03599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 398.0
BYD1_k127_10238823_1 Sigma-70 factor, region 1.2 K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 376.0
BYD1_k127_10238823_2 Stringent starvation protein B K03600 - - 0.000000000000000000000000000000000000000000000000000000000000000000807 231.0
BYD1_k127_10280290_0 peptidyl-tyrosine sulfation - - - 7.183e-308 1001.0
BYD1_k127_10280290_1 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 316.0
BYD1_k127_10280290_2 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.000000000000000000000000000000000000000000000000004068 182.0
BYD1_k127_10280290_3 Belongs to the UPF0386 family K09982 GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0010911,GO:0019899,GO:0044547,GO:0050790,GO:0065007,GO:0065009 - 0.0000000000000000000000000000000005034 133.0
BYD1_k127_10280290_4 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.00000000000000000000005606 98.0
BYD1_k127_10280290_5 - - - - 0.0000007538 59.0
BYD1_k127_10299226_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 2.832e-296 921.0
BYD1_k127_10299226_1 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 459.0
BYD1_k127_10299226_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 462.0
BYD1_k127_10299226_3 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 401.0
BYD1_k127_10299226_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 315.0
BYD1_k127_10299226_5 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000098 283.0
BYD1_k127_10299226_6 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001717 260.0
BYD1_k127_10299226_7 shape-determining protein K03571 - - 0.000000000000000000000000000000000000000000000000000000000001321 225.0
BYD1_k127_10299226_8 Belongs to the UPF0250 family K09158 - - 0.0000000000000000000000000000000000004983 140.0
BYD1_k127_10299226_9 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000003358 58.0
BYD1_k127_10300956_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 621.0
BYD1_k127_10300956_1 breast cancer carboxy-terminal domain K01972 - 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006747 524.0
BYD1_k127_10300956_2 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000663 261.0
BYD1_k127_10344117_0 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 437.0
BYD1_k127_10344117_1 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 366.0
BYD1_k127_1039229_0 coenzyme F390 K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000007612 218.0
BYD1_k127_1039229_1 - - - - 0.000000000000000002977 89.0
BYD1_k127_10506851_0 CDP-alcohol phosphatidyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009443 294.0
BYD1_k127_10506851_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008876 290.0
BYD1_k127_10590476_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1324.0
BYD1_k127_10590476_1 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K12276 - - 3.361e-272 846.0
BYD1_k127_10590476_10 Outer membrane efflux protein K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 369.0
BYD1_k127_10590476_11 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000689 347.0
BYD1_k127_10590476_12 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 336.0
BYD1_k127_10590476_13 peptidase, M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005683 324.0
BYD1_k127_10590476_14 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001509 263.0
BYD1_k127_10590476_15 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000000000009654 236.0
BYD1_k127_10590476_16 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000000000000000000000005578 229.0
BYD1_k127_10590476_17 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.00000000000000000000000000000000000000000000000000000000003597 214.0
BYD1_k127_10590476_18 transcriptional - - - 0.00000000000000000000000000000000000000000000002609 174.0
BYD1_k127_10590476_19 - - - - 0.0000000000000000000000000000000000000000006674 166.0
BYD1_k127_10590476_2 Concanavalin A-like lectin/glucanases superfamily K12287 - - 2.145e-242 795.0
BYD1_k127_10590476_20 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000005125 154.0
BYD1_k127_10590476_21 Bacterial SH3 domain - - - 0.00000000000000000000000000000000000001187 150.0
BYD1_k127_10590476_22 - - - - 0.00000000000000000000000000000000000003334 149.0
BYD1_k127_10590476_23 Protein of unknown function (DUF2721) - - - 0.00000000000000000000000000000000000004201 150.0
BYD1_k127_10590476_24 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.00000000000000000000000000000000431 139.0
BYD1_k127_10590476_25 type IV pilus modification protein PilV K10927 - - 0.0000000000000000000000000000002982 128.0
BYD1_k127_10590476_26 Tfp pilus assembly protein FimT K10926 - - 0.0000000000000000000000001296 111.0
BYD1_k127_10590476_27 Prokaryotic N-terminal methylation motif K10924 - - 0.0000000000000000002832 94.0
BYD1_k127_10590476_28 Prokaryotic N-terminal methylation motif K12285 - - 0.0000000006684 64.0
BYD1_k127_10590476_29 Prokaryotic N-terminal methylation motif K10924 - - 0.000004871 58.0
BYD1_k127_10590476_3 Belongs to the peptidase S41A family K03797 - 3.4.21.102 8.862e-210 661.0
BYD1_k127_10590476_4 Type II secretion system (T2SS), protein F K02455,K12278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 558.0
BYD1_k127_10590476_5 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 487.0
BYD1_k127_10590476_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 443.0
BYD1_k127_10590476_7 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000875 410.0
BYD1_k127_10590476_8 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009388 400.0
BYD1_k127_10590476_9 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 398.0
BYD1_k127_1065647_0 poly(R)-hydroxyalkanoic acid synthase K03821 - - 2.16e-317 979.0
BYD1_k127_1065647_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 5.393e-266 832.0
BYD1_k127_1065647_10 cell division protein - - - 0.00000000000000000000000000000000000001775 156.0
BYD1_k127_1065647_11 Chemotaxis phosphatase CheX K03409 - - 0.00000000000000000000000000000000000009671 151.0
BYD1_k127_1065647_12 effector of murein hydrolase LrgA K06518 - - 0.00000000000000000000000000000002158 129.0
BYD1_k127_1065647_13 PIN domain - - - 0.00000000000000000000000001145 123.0
BYD1_k127_1065647_14 Histidine kinase-like ATPases K03407 - 2.7.13.3 0.000000000000002081 78.0
BYD1_k127_1065647_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 3.327e-242 756.0
BYD1_k127_1065647_3 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 1.927e-236 743.0
BYD1_k127_1065647_4 Hpt domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319 381.0
BYD1_k127_1065647_5 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 337.0
BYD1_k127_1065647_6 LrgB-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 330.0
BYD1_k127_1065647_7 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006389 314.0
BYD1_k127_1065647_8 Thiol disulfide interchange protein K03673 - - 0.000000000000000000000000000000000000000000000000001989 189.0
BYD1_k127_1065647_9 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000005858 151.0
BYD1_k127_10657350_0 Methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 610.0
BYD1_k127_10657350_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 463.0
BYD1_k127_10657350_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 360.0
BYD1_k127_10657350_3 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000002556 265.0
BYD1_k127_10657350_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000005227 256.0
BYD1_k127_10657350_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000000000000000005145 228.0
BYD1_k127_10657350_6 Thioesterase domain K02170 - 3.1.1.85 0.0000000000000000000000000000000000000000001083 167.0
BYD1_k127_10773512_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000005283 214.0
BYD1_k127_10773512_1 RimK-like ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000001608 211.0
BYD1_k127_10773512_2 - - - - 0.00000000000000000000000000000000000000000003696 167.0
BYD1_k127_10773512_3 regulation of ryanodine-sensitive calcium-release channel activity - - - 0.0000000000002966 83.0
BYD1_k127_10788628_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 2.851e-272 844.0
BYD1_k127_10788628_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 4.59e-267 831.0
BYD1_k127_10788628_10 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000002857 133.0
BYD1_k127_10788628_2 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004718 431.0
BYD1_k127_10788628_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 395.0
BYD1_k127_10788628_4 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 303.0
BYD1_k127_10788628_5 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 321.0
BYD1_k127_10788628_6 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000008029 231.0
BYD1_k127_10788628_7 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000000000000005289 218.0
BYD1_k127_10788628_8 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000000000000000000000003237 219.0
BYD1_k127_10788628_9 Predicted membrane protein (DUF2069) - - - 0.00000000000000000000000000000000000005301 146.0
BYD1_k127_10794030_0 histidine kinase A domain protein - - - 1.096e-286 897.0
BYD1_k127_10794030_1 COGs COG1653 ABC-type sugar transport system periplasmic component K02027 - - 7.173e-227 720.0
BYD1_k127_10794030_2 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 465.0
BYD1_k127_10794030_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001068 295.0
BYD1_k127_10794030_4 Belongs to the UPF0061 (SELO) family - - - 0.0000000000000000000000000000001245 127.0
BYD1_k127_10833122_0 abc-type branched-chain amino acid transport K01999 - - 2.537e-194 614.0
BYD1_k127_10833122_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 550.0
BYD1_k127_10833122_10 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.00000000000000000000000000000000000000000000000000000004937 201.0
BYD1_k127_10833122_11 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000009968 193.0
BYD1_k127_10833122_12 NAD(P)H-binding - - - 0.000000000000000000000000000000000000002592 150.0
BYD1_k127_10833122_13 Ferredoxin K04755 - - 0.0000000002139 70.0
BYD1_k127_10833122_2 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 439.0
BYD1_k127_10833122_3 SCP-2 sterol transfer family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582 434.0
BYD1_k127_10833122_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 393.0
BYD1_k127_10833122_5 Conserved hypothetical protein (DUF2461) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002529 302.0
BYD1_k127_10833122_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 295.0
BYD1_k127_10833122_7 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007121 271.0
BYD1_k127_10833122_8 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001844 259.0
BYD1_k127_10833122_9 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000001766 216.0
BYD1_k127_10835045_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 1.798e-222 692.0
BYD1_k127_10835045_1 Domain of unknown function (DUF3391) - - - 1.591e-201 634.0
BYD1_k127_10835045_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 515.0
BYD1_k127_10835045_3 PQ loop repeat K15383 - - 0.000000000000000000000000000000000003505 139.0
BYD1_k127_10850012_0 Elongation factor SelB, winged helix K03833 - - 1.847e-277 871.0
BYD1_k127_10850012_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009908 521.0
BYD1_k127_10850012_2 Elongation factor SelB, winged helix K03833 - - 0.0009181 45.0
BYD1_k127_10989698_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 574.0
BYD1_k127_10989698_1 PFAM Aminotransferase, class V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 566.0
BYD1_k127_10989698_10 PFAM PsiF repeat protein - - - 0.00000000000000000001104 99.0
BYD1_k127_10989698_11 4Fe-4S dicluster domain - - - 0.000001591 59.0
BYD1_k127_10989698_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 513.0
BYD1_k127_10989698_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 441.0
BYD1_k127_10989698_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 412.0
BYD1_k127_10989698_5 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 316.0
BYD1_k127_10989698_6 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 311.0
BYD1_k127_10989698_7 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 299.0
BYD1_k127_10989698_8 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000003484 228.0
BYD1_k127_10989698_9 sigma 54 modulation protein K05808 - - 0.0000000000000000000000000000000000000000004332 159.0
BYD1_k127_10991847_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 8.659e-242 759.0
BYD1_k127_10991847_1 transcriptional - - - 0.000000000000000000000000000000000000000000000000002846 183.0
BYD1_k127_10991847_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000000000000007496 179.0
BYD1_k127_11016037_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.0 1122.0
BYD1_k127_11016037_1 Malic enzyme, NAD binding domain K00027,K00029 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40 0.0 1052.0
BYD1_k127_11016037_10 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 411.0
BYD1_k127_11016037_11 Diguanylate cyclase, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007216 388.0
BYD1_k127_11016037_12 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 378.0
BYD1_k127_11016037_13 Belongs to the peptidase S11 family K07262 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 346.0
BYD1_k127_11016037_14 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006312 336.0
BYD1_k127_11016037_15 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 342.0
BYD1_k127_11016037_16 Negative regulator of beta-lactamase expression K03806 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000139 257.0
BYD1_k127_11016037_17 LUD domain K00782 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001382 252.0
BYD1_k127_11016037_18 Thioesterase superfamily K10806 - - 0.000000000000000000000000000000000000000000000000006587 184.0
BYD1_k127_11016037_19 Histone H1-like nucleoprotein HC2 K11275 - - 0.000000000000000000000000001525 117.0
BYD1_k127_11016037_2 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components K06147 - - 2.562e-278 866.0
BYD1_k127_11016037_20 Bacterial periplasmic substrate-binding proteins K10001 - - 0.00000000000000000002847 94.0
BYD1_k127_11016037_21 - K06950 - - 0.000000000000006703 78.0
BYD1_k127_11016037_3 Domain of unknown function (DUF3390) K18929 - - 2.508e-213 676.0
BYD1_k127_11016037_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006954 577.0
BYD1_k127_11016037_5 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 555.0
BYD1_k127_11016037_6 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008777 535.0
BYD1_k127_11016037_7 Sodium hydrogen exchanger - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005736 481.0
BYD1_k127_11016037_8 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 442.0
BYD1_k127_11016037_9 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00018,K00058 - 1.1.1.29,1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004115 405.0
BYD1_k127_11046320_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0 1019.0
BYD1_k127_11046320_1 protein with a C-terminal OMP (outer membrane protein) domain - - - 8.471e-320 1025.0
BYD1_k127_11046320_10 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 370.0
BYD1_k127_11046320_11 COG0564 Pseudouridylate synthases, 23S RNA-specific K06175 - 5.4.99.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 320.0
BYD1_k127_11046320_12 ferredoxin-NADP+ reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 310.0
BYD1_k127_11046320_13 COG1982 Arginine lysine ornithine decarboxylases K01584 - 4.1.1.19 0.00000000000000000000000000000739 120.0
BYD1_k127_11046320_14 cytochrome complex assembly K02200 - - 0.000000000000000000000005495 108.0
BYD1_k127_11046320_15 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.00000000000000000001385 99.0
BYD1_k127_11046320_2 Cytochrome c7 and related cytochrome c - - - 2.015e-309 989.0
BYD1_k127_11046320_3 heat shock protein binding - - - 4.294e-237 750.0
BYD1_k127_11046320_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 1.741e-199 648.0
BYD1_k127_11046320_5 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005029 608.0
BYD1_k127_11046320_6 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 569.0
BYD1_k127_11046320_7 FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 543.0
BYD1_k127_11046320_8 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 428.0
BYD1_k127_11046320_9 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006596 383.0
BYD1_k127_11258900_0 FAD linked oxidase - - - 0.0 1965.0
BYD1_k127_11258900_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1504.0
BYD1_k127_11258900_10 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 407.0
BYD1_k127_11258900_11 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 409.0
BYD1_k127_11258900_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002805 377.0
BYD1_k127_11258900_13 Protein of unknown function (DUF3443) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 334.0
BYD1_k127_11258900_14 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 308.0
BYD1_k127_11258900_15 phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007055 275.0
BYD1_k127_11258900_16 import inner membrane translocase subunit Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002662 280.0
BYD1_k127_11258900_17 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.00000000000000000000000000000000000000000000000000000000000000000004175 233.0
BYD1_k127_11258900_18 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000004939 253.0
BYD1_k127_11258900_19 signal transduction protein containing EAL and modified HD-GYP - - - 0.0000000000000000000000000000000000000000000000000000000000001538 225.0
BYD1_k127_11258900_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 4.488e-250 780.0
BYD1_k127_11258900_20 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000000000000000000000000000000006989 218.0
BYD1_k127_11258900_21 Protein of unknown function (DUF971) - - - 0.000000000000000000000000000000000000000000000000000000002982 203.0
BYD1_k127_11258900_22 epimerase dehydratase K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000003709 197.0
BYD1_k127_11258900_23 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.00000000000000000000000000000000000000000000000000008523 192.0
BYD1_k127_11258900_24 membrane - - - 0.000000000000000000000000000000000000000000000008542 174.0
BYD1_k127_11258900_25 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000000000000003318 176.0
BYD1_k127_11258900_26 Histidine triad (HIT) - - - 0.0000000000000000000000000000000000000000000002612 171.0
BYD1_k127_11258900_27 protein conserved in bacteria K03690 - - 0.00000000000000000000000000000000017 144.0
BYD1_k127_11258900_28 Protein of unknown function (DUF2844) - - - 0.0000000000000000000000001023 112.0
BYD1_k127_11258900_3 Putative diguanylate phosphodiesterase K03320 - - 1.038e-198 641.0
BYD1_k127_11258900_4 Soluble lytic murein transglycosylase L domain K08309 - - 1.463e-197 635.0
BYD1_k127_11258900_5 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 595.0
BYD1_k127_11258900_6 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 486.0
BYD1_k127_11258900_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 464.0
BYD1_k127_11258900_8 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 462.0
BYD1_k127_11258900_9 Mate efflux family protein K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 448.0
BYD1_k127_11268149_0 Dynamin family - - - 1.434e-196 633.0
BYD1_k127_11268149_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 521.0
BYD1_k127_11268149_2 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 376.0
BYD1_k127_11268149_3 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 310.0
BYD1_k127_11268149_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000001721 129.0
BYD1_k127_11268149_5 Ferredoxin - - - 0.00000000000000000000000006885 106.0
BYD1_k127_11268149_6 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.00000000000000000009439 101.0
BYD1_k127_11282568_0 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009735 604.0
BYD1_k127_11282568_1 ADP-ribosyl- dinitrogen reductase hydrolase K05521 - 3.2.2.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001427 274.0
BYD1_k127_11282568_2 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000009007 183.0
BYD1_k127_11282568_3 Ferredoxin - - - 0.00002308 57.0
BYD1_k127_11304493_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 5.892e-215 681.0
BYD1_k127_11304493_1 von Willebrand factor (vWF) type A domain K02448 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009705 512.0
BYD1_k127_11304493_2 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 375.0
BYD1_k127_11304493_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 381.0
BYD1_k127_11304493_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000001052 185.0
BYD1_k127_11304493_5 - - - - 0.00000000000000000000000000000000000000000000002764 173.0
BYD1_k127_11307219_0 aldehyde ferredoxin oxidoreductase activity K03738 - 1.2.7.5 1.315e-307 954.0
BYD1_k127_11307219_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.878e-301 942.0
BYD1_k127_11307219_10 Acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009298 260.0
BYD1_k127_11307219_11 PFAM GCN5-related N-acetyltransferase K03824 - - 0.0000000000000000000000000000000000000000000000000000000000000000001212 245.0
BYD1_k127_11307219_12 PFAM Cupin 2 conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000003228 234.0
BYD1_k127_11307219_13 Protein of unknown function (DUF1097) - - - 0.000000000000000000000000000000000000000000000000000000000491 207.0
BYD1_k127_11307219_14 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000000002212 148.0
BYD1_k127_11307219_15 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.000000000000000000000000003361 114.0
BYD1_k127_11307219_16 4Fe-4S binding domain - - - 0.000000000000000007597 86.0
BYD1_k127_11307219_17 PFAM ThiamineS - - - 0.0000004443 56.0
BYD1_k127_11307219_2 Transcriptional activator of acetoin glycerol metabolism K21405 - - 5.123e-284 885.0
BYD1_k127_11307219_3 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 1.735e-210 660.0
BYD1_k127_11307219_4 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000837 469.0
BYD1_k127_11307219_5 Cysteine-rich domain K00113 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 445.0
BYD1_k127_11307219_6 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 419.0
BYD1_k127_11307219_7 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 366.0
BYD1_k127_11307219_8 Flavodoxin-like fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 324.0
BYD1_k127_11307219_9 Cation efflux family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 289.0
BYD1_k127_11333589_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 8.175e-266 833.0
BYD1_k127_11333589_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 601.0
BYD1_k127_11333589_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000407 520.0
BYD1_k127_11333589_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 440.0
BYD1_k127_11333589_4 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 391.0
BYD1_k127_11333589_5 MraZ protein, putative antitoxin-like K03925 - - 0.00000000000000000000000000000000000000000000000000000000000000003196 225.0
BYD1_k127_11333589_6 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000000000000000000007647 109.0
BYD1_k127_11389513_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005449 530.0
BYD1_k127_11389513_1 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 441.0
BYD1_k127_11389513_10 Hemerythrin HHE cation binding - - - 0.0000000000000000000000000000000000006601 144.0
BYD1_k127_11389513_11 - - - - 0.00000000000000008416 94.0
BYD1_k127_11389513_12 Belongs to the UPF0102 family K07460 - - 0.0000000000000002821 92.0
BYD1_k127_11389513_13 Uncharacterized conserved protein (DUF2249) - - - 0.00000000006023 67.0
BYD1_k127_11389513_14 - - - - 0.000000002118 62.0
BYD1_k127_11389513_2 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 330.0
BYD1_k127_11389513_3 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006401 276.0
BYD1_k127_11389513_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001438 276.0
BYD1_k127_11389513_5 Belongs to the heme-copper respiratory oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002343 274.0
BYD1_k127_11389513_6 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000004564 232.0
BYD1_k127_11389513_7 periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000003869 223.0
BYD1_k127_11389513_8 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.0000000000000000000000000000000000000000000003822 181.0
BYD1_k127_11389513_9 HIRAN - - - 0.0000000000000000000000000000000000001126 150.0
BYD1_k127_11433531_0 Chemotaxis - - - 2.486e-278 869.0
BYD1_k127_11433531_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 407.0
BYD1_k127_11433531_2 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007403 412.0
BYD1_k127_11433531_3 Proton-conducting membrane transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 383.0
BYD1_k127_11433531_4 Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005845 364.0
BYD1_k127_11433531_5 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 332.0
BYD1_k127_11433531_6 - - - - 0.000000000000000000000000000000000000000000000000000777 194.0
BYD1_k127_11433531_7 Hydrogenase/urease nickel incorporation, metallochaperone, hypA K04651 - - 0.0000000000000000000000000000000000000000000001279 171.0
BYD1_k127_11505429_0 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 1.887e-203 654.0
BYD1_k127_11505429_1 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 612.0
BYD1_k127_11505429_10 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000000000001057 161.0
BYD1_k127_11505429_11 Phospholipid methyltransferase - - - 0.000000000000000000000000000000000006114 141.0
BYD1_k127_11505429_12 - - - - 0.000000000000000003251 94.0
BYD1_k127_11505429_13 - - - - 0.00000000000007886 72.0
BYD1_k127_11505429_2 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000683 390.0
BYD1_k127_11505429_3 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 327.0
BYD1_k127_11505429_4 Dioxygenase K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001507 281.0
BYD1_k127_11505429_5 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007746 260.0
BYD1_k127_11505429_6 SCO1/SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000003364 228.0
BYD1_k127_11505429_7 Biopolymer transport protein K03559 - - 0.00000000000000000000000000000000000000000000000005407 194.0
BYD1_k127_11505429_9 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000002389 177.0
BYD1_k127_11537334_0 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1041.0
BYD1_k127_11537334_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.725e-248 772.0
BYD1_k127_11537334_10 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007457 418.0
BYD1_k127_11537334_11 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 444.0
BYD1_k127_11537334_12 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007036 343.0
BYD1_k127_11537334_13 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 325.0
BYD1_k127_11537334_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 314.0
BYD1_k127_11537334_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 287.0
BYD1_k127_11537334_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001055 278.0
BYD1_k127_11537334_17 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000004076 255.0
BYD1_k127_11537334_18 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000006857 244.0
BYD1_k127_11537334_19 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000162 215.0
BYD1_k127_11537334_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 5.385e-240 747.0
BYD1_k127_11537334_20 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000000000000000000000000000000003314 181.0
BYD1_k127_11537334_21 preprotein translocase K03075 - - 0.000000000000000000000000000000000000004244 149.0
BYD1_k127_11537334_3 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.581e-216 680.0
BYD1_k127_11537334_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 530.0
BYD1_k127_11537334_5 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005274 522.0
BYD1_k127_11537334_6 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 507.0
BYD1_k127_11537334_7 Glycosyltransferase Family 4 K00786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000714 448.0
BYD1_k127_11537334_8 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 448.0
BYD1_k127_11537334_9 Binding-protein-dependent transport system inner membrane component K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 430.0
BYD1_k127_11546135_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.332e-230 720.0
BYD1_k127_11546135_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 2.093e-206 647.0
BYD1_k127_11546135_10 Transcriptional regulatory protein, C terminal K07663 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005949 256.0
BYD1_k127_11546135_11 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004991 241.0
BYD1_k127_11546135_12 cytochrome - - - 0.000000000000000000000000000000000000000000000000000193 190.0
BYD1_k127_11546135_13 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000067 156.0
BYD1_k127_11546135_14 Zinc-finger domain - - - 0.000000000000000000000003021 115.0
BYD1_k127_11546135_15 SnoaL-like domain - - - 0.00007105 46.0
BYD1_k127_11546135_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 594.0
BYD1_k127_11546135_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 526.0
BYD1_k127_11546135_4 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07641 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006051 451.0
BYD1_k127_11546135_5 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 449.0
BYD1_k127_11546135_6 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 431.0
BYD1_k127_11546135_7 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006336 379.0
BYD1_k127_11546135_8 PFAM Inner membrane CreD family protein K06143 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 377.0
BYD1_k127_11546135_9 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002173 278.0
BYD1_k127_11552814_0 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 2.745e-249 791.0
BYD1_k127_11552814_1 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 7.979e-207 653.0
BYD1_k127_11552814_2 Glycosyl hydrolase family 57 - - - 0.000000000000000000000000000000000000000001687 157.0
BYD1_k127_11579565_0 DNA segregation ATPase FtsK SpoIIIE K03466 - - 8.604e-315 982.0
BYD1_k127_11579565_1 argininosuccinate lyase K01755 - 4.3.2.1 1.863e-237 740.0
BYD1_k127_11579565_10 PFAM histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000004956 163.0
BYD1_k127_11579565_11 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000001151 150.0
BYD1_k127_11579565_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 3.183e-215 679.0
BYD1_k127_11579565_3 MgsA AAA+ ATPase C terminal K07478 - - 7.229e-209 656.0
BYD1_k127_11579565_4 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 589.0
BYD1_k127_11579565_5 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006687 480.0
BYD1_k127_11579565_6 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003977 387.0
BYD1_k127_11579565_7 Fructosamine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008898 287.0
BYD1_k127_11579565_8 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000000000000000000000000000000000000000000000008933 231.0
BYD1_k127_11579565_9 Protein of unknown function (DUF1697) - - - 0.00000000000000000000000000000000000000000000000000000002442 201.0
BYD1_k127_11634695_0 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007366 601.0
BYD1_k127_11634695_1 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 520.0
BYD1_k127_11634695_2 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007294 335.0
BYD1_k127_11634695_3 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 286.0
BYD1_k127_11634695_4 Low molecular weight phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000004192 234.0
BYD1_k127_11634695_5 PFAM cytoplasmic chaperone TorD family protein - - - 0.00000000000000000000000000000000006158 143.0
BYD1_k127_11634695_6 Thioredoxin domain - - - 0.0000000000000000000000000000000007788 131.0
BYD1_k127_11634695_7 transcriptional regulators K03892 - - 0.000000000000000000000000000000001088 135.0
BYD1_k127_11634695_8 - - - - 0.0000000000000000000004936 110.0
BYD1_k127_11860377_0 Molybdopterin oxidoreductase Fe4S4 domain K02567 - - 3.255e-319 981.0
BYD1_k127_11860377_1 4Fe-4S dicluster domain K02573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 436.0
BYD1_k127_11860377_2 TIGRFAM ferredoxin-type protein, NapH MauN family K02574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006584 404.0
BYD1_k127_11860377_3 cytochrome c-type protein K02569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 316.0
BYD1_k127_11860377_4 Crp Fnr family transcriptional regulator K21563 - - 0.000000000000000000000000000000000000000000000000001527 190.0
BYD1_k127_11860377_5 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.0000000000000000000000000000000054 133.0
BYD1_k127_11860377_6 Cytochrome c K08738 - - 0.0000000000000000000000004179 108.0
BYD1_k127_11860377_7 - - - - 0.0000000000001724 81.0
BYD1_k127_11934739_0 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 389.0
BYD1_k127_11934739_1 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005021 333.0
BYD1_k127_11934739_10 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000000000000006406 138.0
BYD1_k127_11934739_11 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000001076 83.0
BYD1_k127_11934739_2 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004396 264.0
BYD1_k127_11934739_3 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008405 246.0
BYD1_k127_11934739_4 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000000000000003602 237.0
BYD1_k127_11934739_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000000000000000000000001093 217.0
BYD1_k127_11934739_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000000000000000001984 200.0
BYD1_k127_11934739_7 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000000000000000000000000000000000005978 182.0
BYD1_k127_11934739_8 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000000000000000001525 177.0
BYD1_k127_11934739_9 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000000000000116 165.0
BYD1_k127_11986228_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1266.0
BYD1_k127_11986228_1 Putative diguanylate phosphodiesterase - - - 0.0 1015.0
BYD1_k127_11986228_10 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 446.0
BYD1_k127_11986228_11 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006585 430.0
BYD1_k127_11986228_12 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006072 428.0
BYD1_k127_11986228_13 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002838 413.0
BYD1_k127_11986228_14 Glycosyl transferases group 1 K02844 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 412.0
BYD1_k127_11986228_15 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 391.0
BYD1_k127_11986228_16 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004242 390.0
BYD1_k127_11986228_17 abc transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 367.0
BYD1_k127_11986228_18 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 361.0
BYD1_k127_11986228_19 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005623 368.0
BYD1_k127_11986228_2 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 9.504e-225 704.0
BYD1_k127_11986228_20 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 372.0
BYD1_k127_11986228_21 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 347.0
BYD1_k127_11986228_22 decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin K00817,K02225 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 340.0
BYD1_k127_11986228_23 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 315.0
BYD1_k127_11986228_24 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 296.0
BYD1_k127_11986228_25 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001311 276.0
BYD1_k127_11986228_26 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008532 280.0
BYD1_k127_11986228_27 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.00000000000000000000000000000000000000000000000000000001287 206.0
BYD1_k127_11986228_28 Phasin protein - - - 0.000000000000000000000000000000000000000000000000000002353 196.0
BYD1_k127_11986228_29 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000009625 183.0
BYD1_k127_11986228_3 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 1.333e-205 655.0
BYD1_k127_11986228_30 - - - - 0.0000000000000000000000000000000000000000055 164.0
BYD1_k127_11986228_31 Methyltransferase domain - - - 0.00000000000000000000000000000000000001514 153.0
BYD1_k127_11986228_32 Protein of unknown function (DUF2782) - - - 0.00000000000000000000000000000000008806 138.0
BYD1_k127_11986228_33 Putative quorum-sensing-regulated virulence factor K09954 - - 0.000000000000000000000000000000002162 129.0
BYD1_k127_11986228_34 -O-antigen K02847,K21003 - - 0.00000000000000000000000000002211 137.0
BYD1_k127_11986228_35 - - - - 0.0000000000000002856 86.0
BYD1_k127_11986228_4 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 556.0
BYD1_k127_11986228_5 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 546.0
BYD1_k127_11986228_6 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000806 531.0
BYD1_k127_11986228_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 518.0
BYD1_k127_11986228_8 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 471.0
BYD1_k127_11986228_9 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 451.0
BYD1_k127_12011767_0 PFAM ATP-binding region ATPase domain protein K03407 - 2.7.13.3 1.273e-230 730.0
BYD1_k127_12011767_1 Isocitrate lyase K01637 - 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 590.0
BYD1_k127_12011767_10 Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003881 270.0
BYD1_k127_12011767_11 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000002805 244.0
BYD1_k127_12011767_12 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.000000000000000000000000000000000000000000000000000000000000000000002411 239.0
BYD1_k127_12011767_13 response regulator K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000001878 228.0
BYD1_k127_12011767_14 Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02403 - - 0.0000000000000000000000000000002156 126.0
BYD1_k127_12011767_2 Response regulator receiver K03415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 484.0
BYD1_k127_12011767_3 flagellar motor K02556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 473.0
BYD1_k127_12011767_4 Chemotaxis signal transduction protein K03415 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 469.0
BYD1_k127_12011767_5 flagellar motor protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 422.0
BYD1_k127_12011767_6 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 388.0
BYD1_k127_12011767_7 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008686 334.0
BYD1_k127_12011767_8 Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P) K03414 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 323.0
BYD1_k127_12011767_9 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001006 280.0
BYD1_k127_12029907_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748 1.11.1.21 0.0 1268.0
BYD1_k127_12029907_1 Cytochrome bd-type quinol oxidase, subunit 1 K00425 - 1.10.3.14 2.012e-308 948.0
BYD1_k127_12029907_10 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 430.0
BYD1_k127_12029907_11 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000986 408.0
BYD1_k127_12029907_12 LysR substrate binding domain K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 392.0
BYD1_k127_12029907_13 Cleaves both 3' and 5' ssDNA extremities of branched DNA structures K09968 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 332.0
BYD1_k127_12029907_14 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 319.0
BYD1_k127_12029907_15 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 295.0
BYD1_k127_12029907_16 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000001121 234.0
BYD1_k127_12029907_17 Acid phosphatase homologues K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000003833 217.0
BYD1_k127_12029907_18 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000000004331 200.0
BYD1_k127_12029907_19 Prokaryotic diacylglycerol kinase - - - 0.00000000000000000000000000000000000000000000000002037 202.0
BYD1_k127_12029907_2 oxidase, subunit K00426 - 1.10.3.14 1.724e-220 688.0
BYD1_k127_12029907_20 - - - - 0.00000000000000000000000000000000000000000002173 171.0
BYD1_k127_12029907_21 PFAM Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000000000000000000002234 136.0
BYD1_k127_12029907_22 Response regulator of the LytR AlgR family - - - 0.00000000000000000000000000002246 129.0
BYD1_k127_12029907_23 Protein of unknown function (DUF423) - - - 0.000000000000000000000000006018 115.0
BYD1_k127_12029907_3 Cytochrome c bacterial - - - 1.279e-211 671.0
BYD1_k127_12029907_4 COG0457 FOG TPR repeat - - - 4.176e-198 644.0
BYD1_k127_12029907_5 membrane protein, TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 584.0
BYD1_k127_12029907_6 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007127 589.0
BYD1_k127_12029907_7 cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005519 580.0
BYD1_k127_12029907_8 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305 527.0
BYD1_k127_12029907_9 LysR substrate binding domain K03717 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 481.0
BYD1_k127_12037241_0 Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily K03615 - - 2.166e-241 755.0
BYD1_k127_12037241_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K02584 - - 7.837e-225 732.0
BYD1_k127_12037241_10 PFAM LysE type translocator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 318.0
BYD1_k127_12037241_11 Part of a membrane complex involved in electron transport K03617 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 295.0
BYD1_k127_12037241_12 PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 288.0
BYD1_k127_12037241_13 Part of a membrane complex involved in electron transport K03616 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003106 283.0
BYD1_k127_12037241_14 Cobalamin B12-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009854 274.0
BYD1_k127_12037241_15 Related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001444 259.0
BYD1_k127_12037241_16 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003326 246.0
BYD1_k127_12037241_17 Part of a membrane complex involved in electron transport K03612 - - 0.000000000000000000000000000000000000000000000000000000000000002077 243.0
BYD1_k127_12037241_18 NifZ domain K02597 - - 0.000000000000000000000000000000000000000000000000000000000004004 217.0
BYD1_k127_12037241_19 Pas domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000006843 213.0
BYD1_k127_12037241_2 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 3.218e-195 612.0
BYD1_k127_12037241_20 Rhodanese - - - 0.0000000000000000000000000000000000000000000000000006287 188.0
BYD1_k127_12037241_21 Pfam:Pyridox_oxidase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000005674 182.0
BYD1_k127_12037241_22 - - - - 0.00000000000000000000000000000000000000000000005639 180.0
BYD1_k127_12037241_23 Belongs to the UPF0125 (RnfH) family K09801 - - 0.000000000000000000000000000000000000000614 149.0
BYD1_k127_12037241_24 PFAM Haemerythrin HHE cation-binding motif K07216 - - 0.000000000000000000000000000001837 126.0
BYD1_k127_12037241_25 May protect the nitrogenase Fe-Mo protein from oxidative damage K02595 - - 0.000000000000000000000000004002 115.0
BYD1_k127_12037241_26 Putative motility protein - - - 0.00000000001104 68.0
BYD1_k127_12037241_3 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 635.0
BYD1_k127_12037241_4 PAS PAC sensor signal transduction histidine kinase K05962 - 2.7.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 578.0
BYD1_k127_12037241_5 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 531.0
BYD1_k127_12037241_6 Part of a membrane complex involved in electron transport K03614 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 479.0
BYD1_k127_12037241_7 PFAM Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 431.0
BYD1_k127_12037241_8 2Fe-2S iron-sulfur cluster binding domain K04755,K08952,K08953,K08954 GO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0046858 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 406.0
BYD1_k127_12037241_9 Part of a membrane complex involved in electron transport K03613 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005146 321.0
BYD1_k127_12076645_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0 1002.0
BYD1_k127_12076645_1 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 7.134e-278 871.0
BYD1_k127_12076645_10 ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 354.0
BYD1_k127_12076645_11 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 295.0
BYD1_k127_12076645_12 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000000000000000000000002135 238.0
BYD1_k127_12076645_13 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000000000000000000000000000005046 210.0
BYD1_k127_12076645_14 PFAM CBS domain containing protein - - - 0.0000000000000000000000000000000000000000000000000001059 194.0
BYD1_k127_12076645_15 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000000000000000006113 168.0
BYD1_k127_12076645_16 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000000001712 148.0
BYD1_k127_12076645_17 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000000001096 113.0
BYD1_k127_12076645_18 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000007891 80.0
BYD1_k127_12076645_19 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000006191 81.0
BYD1_k127_12076645_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 6.815e-230 723.0
BYD1_k127_12076645_20 ATP synthase I chain K02116 - - 0.000000003503 63.0
BYD1_k127_12076645_3 amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 606.0
BYD1_k127_12076645_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 583.0
BYD1_k127_12076645_5 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 551.0
BYD1_k127_12076645_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 465.0
BYD1_k127_12076645_7 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 451.0
BYD1_k127_12076645_8 involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009323 427.0
BYD1_k127_12076645_9 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006096 383.0
BYD1_k127_12077611_0 Flavin containing amine oxidoreductase - - - 3.246e-239 744.0
BYD1_k127_12077611_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005931 450.0
BYD1_k127_12077611_10 Protein of unknown function (DUF1365) K09701 - - 0.000000000000000000000000000000000000000000000004543 175.0
BYD1_k127_12077611_2 AsmA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 441.0
BYD1_k127_12077611_3 B12 binding domain K22491 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 418.0
BYD1_k127_12077611_4 abc transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 387.0
BYD1_k127_12077611_5 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 382.0
BYD1_k127_12077611_6 COG0491 Zn-dependent hydrolases, including glyoxylases K01069 GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 321.0
BYD1_k127_12077611_7 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 302.0
BYD1_k127_12077611_8 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0032843,GO:0033554,GO:0034599,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000003024 246.0
BYD1_k127_12077611_9 Large-conductance mechanosensitive channel, MscL - - - 0.00000000000000000000000000000000000000000000000000000000000000008954 224.0
BYD1_k127_12205035_0 PFAM Hemolysin-type calcium-binding - - - 2.641e-319 1001.0
BYD1_k127_12205035_1 Cytochrome C and Quinol oxidase polypeptide I K00404 - 1.9.3.1 2.196e-286 882.0
BYD1_k127_12205035_10 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 400.0
BYD1_k127_12205035_11 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 392.0
BYD1_k127_12205035_12 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000931 346.0
BYD1_k127_12205035_13 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 323.0
BYD1_k127_12205035_14 type I secretion membrane fusion K02022,K12537 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 301.0
BYD1_k127_12205035_15 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006727 266.0
BYD1_k127_12205035_16 Universal stress protein - - - 0.000000000000000000000000000000000000000000000000000000000000000003196 228.0
BYD1_k127_12205035_17 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000003949 224.0
BYD1_k127_12205035_18 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000000000000000000000000000001218 205.0
BYD1_k127_12205035_19 Smr protein MutS2 - - - 0.000000000000000000000000000000000000000000000000000000002137 206.0
BYD1_k127_12205035_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 4.725e-280 878.0
BYD1_k127_12205035_20 universal stress protein - - - 0.000000000000000000000000000000000000000000003376 170.0
BYD1_k127_12205035_21 FixH K09926 - - 0.00000000000000000000000000000000001587 141.0
BYD1_k127_12205035_22 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000009123 136.0
BYD1_k127_12205035_23 Heavy metal-associated domain protein K07213 - - 0.00000000000000005532 92.0
BYD1_k127_12205035_24 Protein of unknown function (DUF3149) - - - 0.000000000000543 70.0
BYD1_k127_12205035_25 Cbb3-type cytochrome oxidase K00407 - - 0.0000000000007206 70.0
BYD1_k127_12205035_3 Poly-beta-hydroxybutyrate K03821 - - 1.221e-270 842.0
BYD1_k127_12205035_4 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 3.187e-242 759.0
BYD1_k127_12205035_5 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 6.888e-238 743.0
BYD1_k127_12205035_6 2-nitropropane dioxygenase - - - 4.997e-228 710.0
BYD1_k127_12205035_7 Cytochrome C oxidase accessory protein - - - 1.221e-210 664.0
BYD1_k127_12205035_8 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 569.0
BYD1_k127_12205035_9 ABC transporter transmembrane region K06148,K12536 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 457.0
BYD1_k127_1235012_0 amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 307.0
BYD1_k127_1235012_1 helix_turn_helix ASNC type - - - 0.0000000000000000000000000000000000000000000000000003626 189.0
BYD1_k127_1235012_2 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.000000000000000000000000000000000000000002988 158.0
BYD1_k127_1235012_3 Outer membrane protein V K07274 - - 0.0000000000000000000000000000000002367 143.0
BYD1_k127_1235012_4 Putative quorum-sensing-regulated virulence factor K09954 - - 0.0000004663 51.0
BYD1_k127_1252829_0 Bacterial transglutaminase-like N-terminal - - - 1.813e-239 745.0
BYD1_k127_1252829_1 Diguanylate cyclase - - - 5.474e-230 737.0
BYD1_k127_1252829_10 'signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000128 294.0
BYD1_k127_1252829_11 Belongs to the UPF0502 family K09915 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008717 270.0
BYD1_k127_1252829_12 Protein of unknown function, DUF269 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004551 243.0
BYD1_k127_1252829_13 WYL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003893 241.0
BYD1_k127_1252829_14 Belongs to the UPF0178 family K09768 - - 0.0000000000000000000000000000000000000000000000000000000000000000005315 233.0
BYD1_k127_1252829_15 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000009019 205.0
BYD1_k127_1252829_16 regulatory - - - 0.00000000000000000000000000000000000000000000000001178 186.0
BYD1_k127_1252829_17 Pfam Dinitrogenase iron-molybdenum cofactor K02596 - - 0.000000000000000000000000000000000000000000007603 172.0
BYD1_k127_1252829_18 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000001084 168.0
BYD1_k127_1252829_19 Plasmid maintenance system antidote protein K21498 - - 0.00000000000000000000000000000000000000005731 153.0
BYD1_k127_1252829_2 Nitrogenase component 1 type Oxidoreductase K02592 - - 5.257e-207 653.0
BYD1_k127_1252829_20 PFAM plasmid maintenance system killer K07334 - - 0.000000000000000000000000000000000000000909 149.0
BYD1_k127_1252829_21 Glyoxalase-like domain K06996 - - 0.0000000000000000000000000000007066 126.0
BYD1_k127_1252829_22 4Fe-4S double cluster binding domain - - - 0.000000000000000000000000000006919 121.0
BYD1_k127_1252829_23 Rop-like - - - 0.0000000000000000000001326 106.0
BYD1_k127_1252829_24 Ferredoxin - - - 0.000000000000000000003015 93.0
BYD1_k127_1252829_25 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.00004465 50.0
BYD1_k127_1252829_3 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006684 572.0
BYD1_k127_1252829_4 Dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000462 476.0
BYD1_k127_1252829_5 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 374.0
BYD1_k127_1252829_6 Transcriptional regulator K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 351.0
BYD1_k127_1252829_7 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 347.0
BYD1_k127_1252829_8 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 319.0
BYD1_k127_1252829_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 297.0
BYD1_k127_13160_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 1.17e-239 743.0
BYD1_k127_13160_1 FAD-dependent pyridine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 527.0
BYD1_k127_13160_2 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 368.0
BYD1_k127_13160_3 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001829 274.0
BYD1_k127_13160_4 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000004526 169.0
BYD1_k127_13160_5 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.000000000000000000000000000000000000000000003352 184.0
BYD1_k127_13160_6 Mut7-C ubiquitin - - - 0.00000000000000000000007304 113.0
BYD1_k127_1368117_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1030.0
BYD1_k127_1368117_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 8.357e-269 841.0
BYD1_k127_1368117_10 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 368.0
BYD1_k127_1368117_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 318.0
BYD1_k127_1368117_12 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 308.0
BYD1_k127_1368117_13 Sigma E regulatory protein, MucB RseB K03598 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008929 286.0
BYD1_k127_1368117_14 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000004603 259.0
BYD1_k127_1368117_15 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002195 253.0
BYD1_k127_1368117_16 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000000008106 139.0
BYD1_k127_1368117_17 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.00000000000000000000000000000000003057 140.0
BYD1_k127_1368117_18 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000000000003739 121.0
BYD1_k127_1368117_19 PFAM glutaredoxin 2 - - - 0.000000000000000000000000006803 111.0
BYD1_k127_1368117_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 8.595e-237 738.0
BYD1_k127_1368117_20 response to oxidative stress K03803 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.000000000003485 72.0
BYD1_k127_1368117_21 Anti sigma-E protein RseA, N-terminal domain K03597 - - 0.00000001183 63.0
BYD1_k127_1368117_22 - K19168 - - 0.00006468 51.0
BYD1_k127_1368117_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 6.825e-208 660.0
BYD1_k127_1368117_4 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 490.0
BYD1_k127_1368117_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 463.0
BYD1_k127_1368117_6 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 445.0
BYD1_k127_1368117_7 signal peptide peptidase K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 444.0
BYD1_k127_1368117_8 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 446.0
BYD1_k127_1368117_9 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 400.0
BYD1_k127_1385677_0 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 436.0
BYD1_k127_1385677_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 371.0
BYD1_k127_1385677_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 340.0
BYD1_k127_1385677_3 PhnA Zinc-Ribbon K06193 - - 0.000000000000000000000000000000000000000000000000000000005377 202.0
BYD1_k127_1385677_4 - - - - 0.000000000000000000000000000000000000000000000006077 177.0
BYD1_k127_1483531_0 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0 1449.0
BYD1_k127_1483531_1 Acyl-CoA synthetase (NDP forming) K09181 - - 0.0 1256.0
BYD1_k127_1483531_10 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 6.653e-220 686.0
BYD1_k127_1483531_11 COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 3.376e-194 616.0
BYD1_k127_1483531_12 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 608.0
BYD1_k127_1483531_13 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K00850,K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 595.0
BYD1_k127_1483531_14 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 598.0
BYD1_k127_1483531_15 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003758 580.0
BYD1_k127_1483531_16 Male sterility protein K02473 - 5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005622 573.0
BYD1_k127_1483531_17 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 579.0
BYD1_k127_1483531_18 Male sterility protein K01709 - 4.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 557.0
BYD1_k127_1483531_19 PFAM aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 550.0
BYD1_k127_1483531_2 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1167.0
BYD1_k127_1483531_20 COG2148 Sugar transferases involved in lipopolysaccharide synthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 552.0
BYD1_k127_1483531_21 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 531.0
BYD1_k127_1483531_22 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 518.0
BYD1_k127_1483531_23 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007099 484.0
BYD1_k127_1483531_24 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 481.0
BYD1_k127_1483531_25 General secretion pathway protein F K02455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000956 460.0
BYD1_k127_1483531_26 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 455.0
BYD1_k127_1483531_27 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 466.0
BYD1_k127_1483531_28 fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006049 432.0
BYD1_k127_1483531_29 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 437.0
BYD1_k127_1483531_3 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 6.524e-312 960.0
BYD1_k127_1483531_30 homoserine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 440.0
BYD1_k127_1483531_31 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 441.0
BYD1_k127_1483531_32 Polysaccharide chain length determinant protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007379 436.0
BYD1_k127_1483531_33 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 421.0
BYD1_k127_1483531_34 Glucose-1-phosphate cytidylyltransferase K00978,K15669 - 2.7.7.33,2.7.7.71 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 411.0
BYD1_k127_1483531_35 serine acetyltransferase K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 401.0
BYD1_k127_1483531_36 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 384.0
BYD1_k127_1483531_37 SMART AAA ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 379.0
BYD1_k127_1483531_38 Domain of unknown function (DUF3473) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 372.0
BYD1_k127_1483531_39 MgtC family K07507 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 360.0
BYD1_k127_1483531_4 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 4.48e-310 962.0
BYD1_k127_1483531_40 GTP cyclohydrolase K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 357.0
BYD1_k127_1483531_41 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008962 331.0
BYD1_k127_1483531_42 COG1596 Periplasmic protein involved in polysaccharide export K01991 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009669 317.0
BYD1_k127_1483531_43 PFAM TatD-related deoxyribonuclease K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 316.0
BYD1_k127_1483531_44 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000718 323.0
BYD1_k127_1483531_45 AAA domain K08252,K16692 - 2.7.10.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 307.0
BYD1_k127_1483531_46 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 307.0
BYD1_k127_1483531_47 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 297.0
BYD1_k127_1483531_48 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008141 303.0
BYD1_k127_1483531_49 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001363 281.0
BYD1_k127_1483531_5 UDP binding domain - - - 1.395e-235 735.0
BYD1_k127_1483531_50 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003262 276.0
BYD1_k127_1483531_51 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001136 269.0
BYD1_k127_1483531_52 Type II secretion system (T2SS), protein K K02460 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005677 258.0
BYD1_k127_1483531_53 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003059 241.0
BYD1_k127_1483531_54 FKBP-type peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000009606 241.0
BYD1_k127_1483531_55 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000002372 249.0
BYD1_k127_1483531_56 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000003103 243.0
BYD1_k127_1483531_57 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000001912 235.0
BYD1_k127_1483531_58 polysaccharide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000001085 244.0
BYD1_k127_1483531_59 tellurite resistance protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001126 229.0
BYD1_k127_1483531_6 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 5.659e-231 722.0
BYD1_k127_1483531_60 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000005476 224.0
BYD1_k127_1483531_61 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly K13643 - - 0.00000000000000000000000000000000000000000000000000000000000000007971 225.0
BYD1_k127_1483531_62 PFAM lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000002238 232.0
BYD1_k127_1483531_63 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000007061 218.0
BYD1_k127_1483531_64 YaeQ family - - - 0.0000000000000000000000000000000000000000000000000000000000001051 219.0
BYD1_k127_1483531_65 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000008928 214.0
BYD1_k127_1483531_66 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000002649 219.0
BYD1_k127_1483531_67 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000001159 211.0
BYD1_k127_1483531_68 TIGRFAM PEP-CTERM system associated protein - - - 0.000000000000000000000000000000000000000000000000000000009564 218.0
BYD1_k127_1483531_69 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.00000000000000000000000000000000000000000000000000000003981 201.0
BYD1_k127_1483531_7 Belongs to the citrate synthase family K01647 - 2.3.3.1 5.27e-228 712.0
BYD1_k127_1483531_70 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000008894 207.0
BYD1_k127_1483531_71 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000000006367 194.0
BYD1_k127_1483531_72 Ankyrin repeat - - - 0.0000000000000000000000000000000000000000000000000009472 202.0
BYD1_k127_1483531_73 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.00000000000000000000000000000000000000000000000001613 186.0
BYD1_k127_1483531_74 Thioredoxin K05838 - - 0.0000000000000000000000000000000000000000000000001027 180.0
BYD1_k127_1483531_75 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000689 180.0
BYD1_k127_1483531_76 GspL periplasmic domain K02461 - - 0.00000000000000000000000000000000000000313 161.0
BYD1_k127_1483531_77 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000002436 145.0
BYD1_k127_1483531_78 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000006357 142.0
BYD1_k127_1483531_79 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.000000000000000000000000000000001167 142.0
BYD1_k127_1483531_8 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 1.526e-227 713.0
BYD1_k127_1483531_80 Type II secretion system (T2SS), protein N K02463 - - 0.000000000000000000000000000000003373 138.0
BYD1_k127_1483531_81 Transferase hexapeptide repeat - - - 0.0000000000000000000000000000001761 132.0
BYD1_k127_1483531_82 Type II secretion system (T2SS), protein I K02458 - - 0.00000000000000000000000000003221 122.0
BYD1_k127_1483531_83 FeS assembly protein IscX - - - 0.00000000000000000000000000006936 123.0
BYD1_k127_1483531_84 Domain of unknown function (DUF1330) - - - 0.000000000000000000001928 106.0
BYD1_k127_1483531_85 Flavinator of succinate dehydrogenase K09159 - - 0.0000000000000008029 79.0
BYD1_k127_1483531_86 O-antigen ligase like membrane protein - - - 0.000000000000001091 90.0
BYD1_k127_1483531_87 PFAM Di-glucose binding within endoplasmic reticulum - - - 0.00000000000003708 82.0
BYD1_k127_1483531_88 Type II secretion system protein C K02452 - - 0.0000000009649 68.0
BYD1_k127_1483531_89 slime layer polysaccharide biosynthetic process - - - 0.000000001937 70.0
BYD1_k127_1483531_9 COG1450 Type II secretory pathway, component PulD K02453 - - 6.971e-223 709.0
BYD1_k127_1483531_90 Pfam:DUF1602 - - - 0.0000001141 58.0
BYD1_k127_1483531_91 general secretion pathway protein K02457 - - 0.00001236 56.0
BYD1_k127_1483531_92 Protein of unknown function (DUF1679) - - - 0.00007216 55.0
BYD1_k127_162263_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 7.241e-217 684.0
BYD1_k127_162263_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003611 432.0
BYD1_k127_1669393_0 ABC transporter transmembrane region K12541 - - 0.0 1013.0
BYD1_k127_1669393_1 HlyD family secretion protein K12542 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007234 586.0
BYD1_k127_1669393_10 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00005988 53.0
BYD1_k127_1669393_2 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17218,K17229 - 1.8.2.3,1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 547.0
BYD1_k127_1669393_3 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000693 285.0
BYD1_k127_1669393_4 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000006965 261.0
BYD1_k127_1669393_5 Mediates electron flow from quinones to the NapAB complex K02569 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0044464,GO:0045333,GO:0055114,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000008359 217.0
BYD1_k127_1669393_6 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000003759 205.0
BYD1_k127_1669393_7 Pfam cytochrome c K17230 - - 0.000000000000000000000000000000000000000000002536 174.0
BYD1_k127_1669393_8 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000292 168.0
BYD1_k127_1669393_9 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000002878 96.0
BYD1_k127_1736427_0 Part of a membrane complex involved in electron transport K03615 - - 1.947e-205 654.0
BYD1_k127_1736427_1 Part of a membrane complex involved in electron transport K03614 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 430.0
BYD1_k127_1736427_2 Part of a membrane complex involved in electron transport K03613 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 304.0
BYD1_k127_1736427_3 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 295.0
BYD1_k127_1736427_4 Part of a membrane complex involved in electron transport K03612 - - 0.000000000000000000000000000000000000000000000000000000000000000001459 237.0
BYD1_k127_1736427_5 Carbohydrate kinase - - - 0.0000000008966 61.0
BYD1_k127_180433_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1353.0
BYD1_k127_180433_1 Belongs to the MurCDEF family K03802 - 6.3.2.29,6.3.2.30 0.0 1316.0
BYD1_k127_180433_10 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 293.0
BYD1_k127_180433_11 Methyltransferase small domain K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 302.0
BYD1_k127_180433_12 Domain of unknown function (DUF1854) - - - 0.000000000000000000000000000000000000000000000000000000000002184 213.0
BYD1_k127_180433_13 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000000000000000000000000003084 191.0
BYD1_k127_180433_14 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000004966 162.0
BYD1_k127_180433_15 DsrC like protein - - - 0.0000000000000000000000000000000000000009194 151.0
BYD1_k127_180433_16 Cold shock K03704 - - 0.00000000000000000000000000000000001366 136.0
BYD1_k127_180433_17 Glycine-zipper domain - - - 0.00000000000000000000000000000007171 129.0
BYD1_k127_180433_18 - - - - 0.0000000000000000000000001516 108.0
BYD1_k127_180433_19 - - - - 0.00000000000000000004239 90.0
BYD1_k127_180433_2 C-terminal, D2-small domain, of ClpB protein K03694 - - 0.0 1234.0
BYD1_k127_180433_20 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000001235 85.0
BYD1_k127_180433_3 ABC transporter transmembrane region K06147 - - 0.0 1184.0
BYD1_k127_180433_4 UPF0313 protein - - - 0.0 1084.0
BYD1_k127_180433_5 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 1.59e-296 926.0
BYD1_k127_180433_6 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 1.191e-276 855.0
BYD1_k127_180433_7 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009646 594.0
BYD1_k127_180433_8 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 542.0
BYD1_k127_180433_9 HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000091 298.0
BYD1_k127_1814923_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1340.0
BYD1_k127_1814923_1 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 0.0 1063.0
BYD1_k127_1814923_10 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.0000000000000000000000000002761 121.0
BYD1_k127_1814923_11 Cytochrome oxidase maturation protein cbb3-type - - - 0.000000000000000001527 90.0
BYD1_k127_1814923_13 type IV pilus modification protein PilV K02671 - - 0.00007829 52.0
BYD1_k127_1814923_2 cation transport ATPase K01533 - 3.6.3.4 0.0 1032.0
BYD1_k127_1814923_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 453.0
BYD1_k127_1814923_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 345.0
BYD1_k127_1814923_5 Type IV Pilus-assembly protein W K02672 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002226 256.0
BYD1_k127_1814923_6 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000007127 185.0
BYD1_k127_1814923_7 Pilus assembly protein PilX - - - 0.0000000000000000000000000000000000000000003192 166.0
BYD1_k127_1814923_8 Type II transport protein GspH K08084 - - 0.000000000000000000000000000000000003298 143.0
BYD1_k127_1814923_9 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000002466 137.0
BYD1_k127_1820779_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 7.174e-234 756.0
BYD1_k127_1820779_1 COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003776 370.0
BYD1_k127_1820779_2 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000005201 147.0
BYD1_k127_1856743_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 3.611e-257 809.0
BYD1_k127_1856743_1 Sigma factor PP2C-like phosphatases - - - 0.000000000000000000000000000000000000000009954 158.0
BYD1_k127_1856743_2 membrane - - - 0.00000000000000000000000000001873 119.0
BYD1_k127_1856743_3 - K02221 - - 0.000000000000000000000001782 106.0
BYD1_k127_1856743_4 - - - - 0.0000000000000002426 84.0
BYD1_k127_1876241_0 Selenocysteine synthase N terminal K01042 - 2.9.1.1 3.846e-204 645.0
BYD1_k127_1876241_1 Glucose sorbosone K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 581.0
BYD1_k127_1876241_10 TfoX N-terminal domain - - - 0.00000000000000000000000000000000000000198 153.0
BYD1_k127_1876241_11 Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.00000000000000000000000000000000000001732 154.0
BYD1_k127_1876241_12 PFAM Hemerythrin HHE cation binding domain K07216 - - 0.000000000000000000000000000000000003309 141.0
BYD1_k127_1876241_13 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000003345 139.0
BYD1_k127_1876241_15 Cache_2 - - - 0.0000000000000000000000000002202 126.0
BYD1_k127_1876241_16 Dodecin K09165 - - 0.0000000000000000000001749 108.0
BYD1_k127_1876241_2 Histidine Phosphotransfer domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 578.0
BYD1_k127_1876241_3 Domain of unknown function (DUF3391) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 481.0
BYD1_k127_1876241_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 336.0
BYD1_k127_1876241_5 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001814 278.0
BYD1_k127_1876241_6 chemotaxis K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000001112 245.0
BYD1_k127_1876241_7 Necessary for formate dehydrogenase activity K02380 - - 0.0000000000000000000000000000000000000000000000000000000000002777 215.0
BYD1_k127_1876241_8 - - - - 0.000000000000000000000000000000000000000000000000000001244 201.0
BYD1_k127_1876241_9 Bacterial extracellular solute-binding proteins, family 3 - - - 0.0000000000000000000000000000000000000004666 158.0
BYD1_k127_1992991_0 type II secretion system protein E K02454,K02652,K12276 - - 1.378e-205 646.0
BYD1_k127_1992991_1 - - - - 0.0000000000000000000002481 109.0
BYD1_k127_1992991_2 Pilus assembly protein, PilO - - - 0.0000000000000001722 92.0
BYD1_k127_1992991_3 - - - - 0.0000000000001992 77.0
BYD1_k127_1992991_4 - - - - 0.00000000004183 74.0
BYD1_k127_1992991_5 Secretin and TonB N terminus short domain K02453 - - 0.0000000005193 71.0
BYD1_k127_2001117_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1169.0
BYD1_k127_2001117_1 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 456.0
BYD1_k127_2043482_0 GTP-binding protein TypA K06207 - - 0.0 1040.0
BYD1_k127_2043482_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 508.0
BYD1_k127_2043482_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 500.0
BYD1_k127_2043482_3 phosphoribosyltransferase K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000006222 238.0
BYD1_k127_2043482_4 (Lipo)protein - - - 0.000000000000000000000000000000000000000000000000000003224 196.0
BYD1_k127_2043482_5 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.0002061 44.0
BYD1_k127_207324_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 1.358e-208 653.0
BYD1_k127_207324_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 414.0
BYD1_k127_2095304_0 Sulfate transporter antisigma-factor antagonist STAS - - - 1.078e-290 916.0
BYD1_k127_2095304_1 Proton-conducting membrane transporter - - - 3.323e-284 886.0
BYD1_k127_2095304_10 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 328.0
BYD1_k127_2095304_11 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 303.0
BYD1_k127_2095304_12 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000003886 232.0
BYD1_k127_2095304_13 efflux protein - - - 0.000000000000000000000000000000000000000000000000000001055 199.0
BYD1_k127_2095304_14 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000001965 190.0
BYD1_k127_2095304_15 COG2346, Truncated hemoglobins - - - 0.0000000000000000000000000000000000007685 146.0
BYD1_k127_2095304_17 - - - - 0.00000000000000000005928 96.0
BYD1_k127_2095304_18 Polymer-forming cytoskeletal - - - 0.00000000000003051 85.0
BYD1_k127_2095304_2 Diguanylate cyclase - - - 8.651e-282 901.0
BYD1_k127_2095304_20 - - - - 0.00000003811 61.0
BYD1_k127_2095304_3 Sulfate transporter antisigma-factor antagonist STAS - - - 1.019e-263 823.0
BYD1_k127_2095304_4 Sigma-54 interaction domain - - - 2.695e-238 742.0
BYD1_k127_2095304_5 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 1.136e-230 732.0
BYD1_k127_2095304_6 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 4.447e-210 662.0
BYD1_k127_2095304_7 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003298 574.0
BYD1_k127_2095304_8 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 524.0
BYD1_k127_2095304_9 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 465.0
BYD1_k127_2207433_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1070.0
BYD1_k127_2207433_1 RNB K01147 - 3.1.13.1 1.598e-258 822.0
BYD1_k127_2207433_10 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009395 303.0
BYD1_k127_2207433_11 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000000000000218 221.0
BYD1_k127_2207433_12 A G-specific K03575 - - 0.000000000000000000000000000000000000000000000000000000002408 205.0
BYD1_k127_2207433_13 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000002253 208.0
BYD1_k127_2207433_14 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000002273 194.0
BYD1_k127_2207433_15 Domain of unknown function (DUF4124) - - - 0.00000000004426 74.0
BYD1_k127_2207433_2 Magnesium transport protein CorA K03284 - - 8.623e-208 655.0
BYD1_k127_2207433_3 Aminotransferase K01845 - 5.4.3.8 4.23e-205 652.0
BYD1_k127_2207433_4 Domain of unknown function (DUF3391) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 592.0
BYD1_k127_2207433_5 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 456.0
BYD1_k127_2207433_6 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003215 417.0
BYD1_k127_2207433_7 carbonic anhydrase K01674 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 407.0
BYD1_k127_2207433_8 COG0810 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003786 323.0
BYD1_k127_2207433_9 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 317.0
BYD1_k127_2214392_0 Belongs to the aconitase IPM isomerase family K01682 - 4.2.1.3,4.2.1.99 0.0 1483.0
BYD1_k127_2214392_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.27,1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 531.0
BYD1_k127_2214392_2 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 507.0
BYD1_k127_2214392_3 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008545 477.0
BYD1_k127_2214392_4 transcriptional K03710 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006545 383.0
BYD1_k127_2214392_5 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.0000000000000000000000000000000000000000000000004982 178.0
BYD1_k127_2214392_6 Succinate dehydrogenase, hydrophobic K00242 - - 0.00000000000000000000000000000000002431 143.0
BYD1_k127_2232573_0 Elongator protein 3, MiaB family, Radical SAM - - - 7.46e-316 976.0
BYD1_k127_2232573_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005134 257.0
BYD1_k127_2232573_2 Glycine cleavage H-protein - - - 0.000000000000000000000000000000000000000000000005737 177.0
BYD1_k127_2232573_3 DsrE/DsrF-like family - - - 0.0000000000000000000000000002022 124.0
BYD1_k127_2232573_5 Elongation factor SelB, winged helix K03833 - - 0.000006783 49.0
BYD1_k127_2240366_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 3.158e-212 666.0
BYD1_k127_2240366_1 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 601.0
BYD1_k127_2240366_10 Transcriptional regulator - - - 0.000000000000000000000000000000000000002511 148.0
BYD1_k127_2240366_11 - - - - 0.0000000000000000000002656 109.0
BYD1_k127_2240366_12 - - - - 0.0000004301 54.0
BYD1_k127_2240366_2 (Lipo)protein K07287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 474.0
BYD1_k127_2240366_3 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 468.0
BYD1_k127_2240366_4 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 333.0
BYD1_k127_2240366_5 Inhibitor of apoptosis-promoting Bax1 K19416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007532 330.0
BYD1_k127_2240366_6 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 331.0
BYD1_k127_2240366_7 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007844 316.0
BYD1_k127_2240366_8 Uncharacterized protein family UPF0016 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 311.0
BYD1_k127_2240366_9 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000142 256.0
BYD1_k127_2341077_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1061.0
BYD1_k127_2341077_1 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 9.614e-236 733.0
BYD1_k127_2341077_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 2.028e-233 733.0
BYD1_k127_2341077_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009636 381.0
BYD1_k127_2341077_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009956 349.0
BYD1_k127_2341077_5 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 325.0
BYD1_k127_2341077_6 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 286.0
BYD1_k127_2341077_7 Biopolymer transport protein K03559 - - 0.0000000000000000000000000000000000000000000000000002407 194.0
BYD1_k127_2341077_8 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000000000002136 130.0
BYD1_k127_2341077_9 Belongs to the UPF0434 family K09791 - - 0.000000000000000000000002352 104.0
BYD1_k127_2366215_0 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003928 277.0
BYD1_k127_2366215_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001509 238.0
BYD1_k127_2366215_2 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 0.0000000000000000000000000000000006623 135.0
BYD1_k127_2369628_0 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 2.539e-228 708.0
BYD1_k127_2369628_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 6.614e-204 640.0
BYD1_k127_2369628_10 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000002356 85.0
BYD1_k127_2369628_2 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009349 556.0
BYD1_k127_2369628_3 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006543 469.0
BYD1_k127_2369628_4 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 443.0
BYD1_k127_2369628_5 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008849 379.0
BYD1_k127_2369628_6 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 378.0
BYD1_k127_2369628_7 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 304.0
BYD1_k127_2369628_8 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000000000000000000000000009958 213.0
BYD1_k127_2369628_9 SpoIIAA-like - - - 0.000000000000000000000000000000000000000004059 165.0
BYD1_k127_2394196_0 transposase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019 312.0
BYD1_k127_2394196_1 Pfam Transposase IS66 - - - 0.0000000001384 62.0
BYD1_k127_2394196_2 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 0.0001727 45.0
BYD1_k127_2481660_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 7.101e-301 930.0
BYD1_k127_2481660_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 557.0
BYD1_k127_2481660_2 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 487.0
BYD1_k127_2487424_0 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000025 159.0
BYD1_k127_2487424_1 cytochrome c oxidase, subunit III K02276 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 1.9.3.1 0.00000000000000000000000000000000000002348 150.0
BYD1_k127_2487424_2 signal sequence binding K07152 - - 0.0000000000000000000000000000000002587 142.0
BYD1_k127_2487424_3 heme-copper terminal oxidase activity K02274 - 1.9.3.1 0.0000000000000000000000000000001265 128.0
BYD1_k127_2489724_0 Type I restriction enzyme R protein N terminus (HSDR_N) - - - 0.0 1902.0
BYD1_k127_2489724_1 AAA domain - - - 3.674e-199 627.0
BYD1_k127_2489724_10 Binding-protein-dependent transport system inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 385.0
BYD1_k127_2489724_11 methionine synthase K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000142 249.0
BYD1_k127_2489724_12 PAS fold - - - 0.00000000000000000000000000000000000000000000000000001149 217.0
BYD1_k127_2489724_13 Domain of Unknown Function (DUF350) K08989 - - 0.00000000000000000000000000000000000000000002395 164.0
BYD1_k127_2489724_14 transport - - - 0.0000000000000000000000000000001734 124.0
BYD1_k127_2489724_15 - - - - 0.00000000001109 74.0
BYD1_k127_2489724_2 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008936 552.0
BYD1_k127_2489724_3 Glutathionylspermidine synthase preATP-grasp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 540.0
BYD1_k127_2489724_4 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 520.0
BYD1_k127_2489724_5 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 489.0
BYD1_k127_2489724_6 Histidine kinase K10715,K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 481.0
BYD1_k127_2489724_7 Saccharopine dehydrogenase C-terminal domain K00808 - 2.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009047 452.0
BYD1_k127_2489724_8 Binding-protein-dependent transport system inner membrane component K02054,K11071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 397.0
BYD1_k127_2489724_9 COG0732 Restriction endonuclease S subunits K01154 - 3.1.21.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000886 379.0
BYD1_k127_2507897_0 type III restriction protein res subunit K01153 - 3.1.21.3 0.0 1349.0
BYD1_k127_2507897_1 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 3.035e-290 903.0
BYD1_k127_2507897_10 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000001609 153.0
BYD1_k127_2507897_11 Mobile mystery protein A - - - 0.0000000000000000000000006745 109.0
BYD1_k127_2507897_12 - - - - 0.0000001897 53.0
BYD1_k127_2507897_2 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 1.303e-271 844.0
BYD1_k127_2507897_3 N-6 DNA methylase K03427 - 2.1.1.72 2.659e-265 822.0
BYD1_k127_2507897_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 352.0
BYD1_k127_2507897_5 Type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001356 281.0
BYD1_k127_2507897_6 Protein of unknown function (DUF3644) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001139 267.0
BYD1_k127_2507897_7 Fic/DOC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002397 241.0
BYD1_k127_2507897_8 Nuclease-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000009909 224.0
BYD1_k127_2507897_9 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000000001351 191.0
BYD1_k127_2511904_0 Major Facilitator - - - 5.947e-212 664.0
BYD1_k127_2511904_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 617.0
BYD1_k127_2511904_10 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005211 359.0
BYD1_k127_2511904_11 uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 322.0
BYD1_k127_2511904_12 response regulator K07662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 317.0
BYD1_k127_2511904_13 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002799 257.0
BYD1_k127_2511904_14 Peptidase M22 glycoprotease K14742 - - 0.000000000000000000000000000000000000000000000000000000000005197 214.0
BYD1_k127_2511904_15 Pfam:TPM - - - 0.00000000000000000000000000000000000000000000000000006194 193.0
BYD1_k127_2511904_16 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000000000000005756 188.0
BYD1_k127_2511904_17 EF-hand domain pair - - - 0.0000000000000000000000000000000000000000000004569 176.0
BYD1_k127_2511904_18 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789,K14742 - 2.3.1.128 0.00000000000000000000000000000000000000003409 166.0
BYD1_k127_2511904_19 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000001428 155.0
BYD1_k127_2511904_2 chemotaxis K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 610.0
BYD1_k127_2511904_20 Domain of unknown function (DUF4405) - - - 0.00000000000000000000000000000006508 130.0
BYD1_k127_2511904_21 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000001737 121.0
BYD1_k127_2511904_22 Belongs to the glycosyl hydrolase 28 family - - - 0.0000000000004141 81.0
BYD1_k127_2511904_3 RND efflux system, outer membrane lipoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 496.0
BYD1_k127_2511904_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004633 477.0
BYD1_k127_2511904_5 Histidine kinase K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006815 452.0
BYD1_k127_2511904_6 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007064 377.0
BYD1_k127_2511904_7 Glycosyl transferase family 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 378.0
BYD1_k127_2511904_8 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 358.0
BYD1_k127_2511904_9 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 362.0
BYD1_k127_2594639_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 556.0
BYD1_k127_2594639_1 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 406.0
BYD1_k127_2594639_2 TIGRFAM pyruvate ferredoxin flavodoxin oxidoreductase, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000282 289.0
BYD1_k127_2594639_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000104 217.0
BYD1_k127_2594639_4 Reductase C-terminal K05297 - 1.18.1.1 0.0000000000000000000000000007307 130.0
BYD1_k127_2594639_5 Immunity protein 31 - - - 0.0000000000001701 75.0
BYD1_k127_2599518_0 Methyltransferase, chemotaxis proteins K13924 - 2.1.1.80,3.1.1.61 0.0 1146.0
BYD1_k127_2599518_1 Belongs to the UPF0061 (SELO) family - - - 1.85e-213 674.0
BYD1_k127_2599518_10 Domain of unknown function (DUF4304) - - - 0.0000000004067 69.0
BYD1_k127_2599518_2 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 325.0
BYD1_k127_2599518_3 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000855 271.0
BYD1_k127_2599518_4 Transcriptional regulator K19591,K21744 - - 0.0000000000000000000000000000000000000000000000000000000001394 209.0
BYD1_k127_2599518_5 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000002958 207.0
BYD1_k127_2599518_6 Dinitrogenase iron-molybdenum cofactor - - - 0.000000000000000000000000000000000000000002808 160.0
BYD1_k127_2599518_7 oxygen carrier activity K08282,K13419 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.7.11.1 0.000000000000000000000000000000000000002347 158.0
BYD1_k127_2599518_8 - - - - 0.00000000000000000000000000000000002806 144.0
BYD1_k127_2599518_9 PspC domain - - - 0.000000000000000000000000000000007636 130.0
BYD1_k127_2701812_0 COG2202 FOG PAS PAC domain K03776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 509.0
BYD1_k127_2701812_1 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 484.0
BYD1_k127_2701812_2 TIGRFAM Molybdate ABC transporter K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 363.0
BYD1_k127_2701812_3 ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 335.0
BYD1_k127_2701812_4 NifQ K15790 - - 0.000000000000000000000000000000000000000000000000000000000000000007778 230.0
BYD1_k127_2701812_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000003354 192.0
BYD1_k127_2701812_6 TOBE domain K02019 - - 0.00000000000000000001318 91.0
BYD1_k127_2701812_7 Histidine kinase - - - 0.0000000000007345 79.0
BYD1_k127_2706317_0 MMPL family K07003 - - 0.0 1152.0
BYD1_k127_2706317_1 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 3.723e-304 944.0
BYD1_k127_2706317_2 CoA binding domain - - - 2.834e-272 854.0
BYD1_k127_2706317_3 Protein of unknown function (DUF1329) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 581.0
BYD1_k127_2706317_4 Photosynthesis system II assembly factor YCF48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 343.0
BYD1_k127_2706317_5 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 346.0
BYD1_k127_2706317_6 Carboxylesterase family K01066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 304.0
BYD1_k127_2706317_7 Heavy-metal resistance - - - 0.0000000000000000007235 93.0
BYD1_k127_2771428_0 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 467.0
BYD1_k127_2771428_1 4Fe-4S dicluster domain K16887 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 342.0
BYD1_k127_2771428_2 Cytochrome C oxidase, cbb3-type, subunit III K19713 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016669,GO:0050338,GO:0055114 1.8.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000005867 245.0
BYD1_k127_2771428_3 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 0.00000000000000000000000000000000000214 138.0
BYD1_k127_2771428_4 sulphate transporter K03321 - - 0.00000000000000000000000000000006078 143.0
BYD1_k127_284376_0 Cytochrome c554 and c-prime - - - 7.787e-297 925.0
BYD1_k127_284376_1 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 4.849e-216 692.0
BYD1_k127_284376_2 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 398.0
BYD1_k127_284376_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07673 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 346.0
BYD1_k127_284376_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07684 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002387 246.0
BYD1_k127_284376_5 Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000001226 171.0
BYD1_k127_284376_6 Pfam cytochrome c K08738 - - 0.000000000000000000000000000002664 124.0
BYD1_k127_284376_7 NapD protein K02570 - - 0.000000008755 60.0
BYD1_k127_2883284_0 Proton-conducting membrane transporter - - - 6.853e-203 636.0
BYD1_k127_2883284_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000473 514.0
BYD1_k127_2883284_2 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008925 308.0
BYD1_k127_2883284_3 NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 295.0
BYD1_k127_2904145_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 389.0
BYD1_k127_2904145_1 Protein of unknown function (DUF3833) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007345 336.0
BYD1_k127_2904145_2 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 301.0
BYD1_k127_2904145_3 MFS/sugar transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001934 268.0
BYD1_k127_2904145_4 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000004504 251.0
BYD1_k127_2904145_5 SnoaL-like domain K01822 - 5.3.3.1 0.00000000000000000000000000000000000000000000000168 177.0
BYD1_k127_291528_0 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 366.0
BYD1_k127_291528_1 HAD-hyrolase-like K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000000000000000001494 244.0
BYD1_k127_291528_2 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000000000002483 199.0
BYD1_k127_2959276_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.656e-246 766.0
BYD1_k127_2959276_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 561.0
BYD1_k127_2959276_10 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000000000000008113 232.0
BYD1_k127_2959276_11 Polysaccharide biosynthesis protein K17716 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000005594 226.0
BYD1_k127_2959276_12 dTDP-4-dehydrorhamnose reductase K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000007297 225.0
BYD1_k127_2959276_13 Required for insertion of 4Fe-4S clusters K15724 - - 0.00000000000000000000000000000000000000000000000000000000003413 207.0
BYD1_k127_2959276_14 - - - - 0.000000000000000000000000000000000000000000000000000005455 211.0
BYD1_k127_2959276_15 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000002221 194.0
BYD1_k127_2959276_16 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000000000000000000000000004114 173.0
BYD1_k127_2959276_17 ABC transporter, ATP-binding protein K11085 - - 0.00000000000000000000000000000000000004984 162.0
BYD1_k127_2959276_18 polysaccharide biosynthetic process K03183,K15256 - 2.1.1.163,2.1.1.201 0.0000000000000000000000004877 115.0
BYD1_k127_2959276_19 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000001041 107.0
BYD1_k127_2959276_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 358.0
BYD1_k127_2959276_21 transferase activity, transferring glycosyl groups K21011,K21012 - - 0.000000000007406 69.0
BYD1_k127_2959276_22 Glycosyl transferases group 1 - - - 0.000001097 60.0
BYD1_k127_2959276_3 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 310.0
BYD1_k127_2959276_4 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002366 314.0
BYD1_k127_2959276_5 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 302.0
BYD1_k127_2959276_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000365 273.0
BYD1_k127_2959276_7 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004482 295.0
BYD1_k127_2959276_8 Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components K05785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 252.0
BYD1_k127_2959276_9 redox protein, regulator of disulfide bond formation K07397 - - 0.00000000000000000000000000000000000000000000000000000000000000000006288 233.0
BYD1_k127_2997070_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1546.0
BYD1_k127_2997070_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1184.0
BYD1_k127_2997070_10 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.0000000000000000000000000002355 117.0
BYD1_k127_2997070_11 Protein of unknown function (DUF2892) - - - 0.00000000000000000000007567 113.0
BYD1_k127_2997070_2 Putative diguanylate phosphodiesterase - - - 1.047e-211 680.0
BYD1_k127_2997070_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 558.0
BYD1_k127_2997070_4 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008324 528.0
BYD1_k127_2997070_5 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004565 511.0
BYD1_k127_2997070_6 Histidine kinase K20975 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 434.0
BYD1_k127_2997070_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 323.0
BYD1_k127_2997070_8 Domain of unknown function (DUF4202) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 313.0
BYD1_k127_2997070_9 - - - - 0.00000000000000000000000000005537 119.0
BYD1_k127_3070115_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 1.644e-252 812.0
BYD1_k127_3070115_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.965e-223 700.0
BYD1_k127_3070115_2 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008597 610.0
BYD1_k127_3070115_3 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000621 497.0
BYD1_k127_3070115_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004056 392.0
BYD1_k127_3070115_5 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 336.0
BYD1_k127_3070115_6 Protein involved in transmembrane transport - - - 0.0000000000000000000000000000007299 124.0
BYD1_k127_3104887_0 poly(R)-hydroxyalkanoic acid synthase K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 362.0
BYD1_k127_3104887_1 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 309.0
BYD1_k127_3104887_2 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000000000002283 187.0
BYD1_k127_3104887_3 cell division protein - - - 0.0000000000000000000000000000007187 125.0
BYD1_k127_3104887_4 PIN domain - - - 0.0000000000000000000000004545 117.0
BYD1_k127_3152382_0 Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane K07791,K07792 - - 8.685e-224 700.0
BYD1_k127_3152382_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 364.0
BYD1_k127_3152382_2 ggdef domain - - - 0.0000102 49.0
BYD1_k127_3176291_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 1.355e-276 862.0
BYD1_k127_3176291_1 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 524.0
BYD1_k127_3176291_2 Eco57I restriction-modification methylase K07317 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008828 455.0
BYD1_k127_3176291_3 phosphoserine phosphatase K02203 - 2.7.1.39,3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 338.0
BYD1_k127_3176291_4 Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 294.0
BYD1_k127_3176291_5 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008163 257.0
BYD1_k127_3176291_6 - - - - 0.0000906 49.0
BYD1_k127_3214285_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K12957 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005737 490.0
BYD1_k127_3214285_1 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000006743 222.0
BYD1_k127_3214285_2 Protein of unknown function (DUF3014) - - - 0.00000000000000000000000000000000000000000000000000000002057 203.0
BYD1_k127_3214285_3 Tellurite resistance protein TerB - - - 0.00000000000000000000000000000000000000000000000000000002379 200.0
BYD1_k127_3264778_0 TIGRFAM PAS sensor protein - - - 3.374e-201 636.0
BYD1_k127_3264778_1 AMP-binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 591.0
BYD1_k127_3281879_0 Acetyl-CoA hydrolase/transferase N-terminal domain K18288 - - 6.339e-243 756.0
BYD1_k127_3281879_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 437.0
BYD1_k127_3281879_2 AAA domain, putative AbiEii toxin, Type IV TA system K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001899 358.0
BYD1_k127_3281879_3 LRV protein FeS4 cluster - - - 0.0000000000000000000000000000000000000000000000000000000005567 206.0
BYD1_k127_3283584_0 Nickel-dependent hydrogenase K06281 - 1.12.99.6 2.819e-317 977.0
BYD1_k127_3283584_1 Bacterial regulatory protein, Fis family K19641 - - 1.543e-197 630.0
BYD1_k127_3283584_10 Polysulphide reductase, NrfD - - - 0.0000004663 51.0
BYD1_k127_3283584_2 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 625.0
BYD1_k127_3283584_3 NiFe/NiFeSe hydrogenase small subunit C-terminal K00534 - 1.12.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 499.0
BYD1_k127_3283584_4 Large exoproteins involved in heme utilization or adhesion K15125 - - 0.0000000000000000000000000000000000000000000000000000002953 217.0
BYD1_k127_3283584_5 - - - - 0.0000000000000000000000000000000000000000000000000000004426 207.0
BYD1_k127_3283584_6 Hydrogenase maturation protease K03605 - - 0.00000000000000000000000000000000000000000000000000002237 192.0
BYD1_k127_3283584_7 [NiFe]-hydrogenase assembly, chaperone, HybE - - - 0.00000000000000000000000000000002243 136.0
BYD1_k127_3283584_8 HupF/HypC family K04653 - - 0.000000000000000000001045 99.0
BYD1_k127_3283584_9 - - - - 0.000000000004741 78.0
BYD1_k127_3289796_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000001211 262.0
BYD1_k127_3289796_1 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000000000000000413 159.0
BYD1_k127_3289796_2 YaeQ - - - 0.000000000000007081 75.0
BYD1_k127_3429394_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.563e-254 788.0
BYD1_k127_3429394_1 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003816 425.0
BYD1_k127_3431646_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1571.0
BYD1_k127_3431646_1 Hsp90 protein K04079 - - 0.0 1055.0
BYD1_k127_3431646_10 Nitrate reductase gamma subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 338.0
BYD1_k127_3431646_11 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 314.0
BYD1_k127_3431646_12 Cysteine-rich domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 291.0
BYD1_k127_3431646_13 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002173 258.0
BYD1_k127_3431646_14 Domain of unknown function (DUF4337) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001055 250.0
BYD1_k127_3431646_15 TIGRFAM sulfur relay protein TusD DsrE K07235 GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0019417,GO:0044237,GO:0055114 - 0.000000000000000000000000000000000000000000000000000000000000000000004168 236.0
BYD1_k127_3431646_16 G T U mismatch-specific DNA glycosylase K03649 - 3.2.2.28 0.00000000000000000000000000000000000000000000000000000000000002672 218.0
BYD1_k127_3431646_17 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000000000000000003384 194.0
BYD1_k127_3431646_18 Belongs to the DsrF TusC family K07236 - - 0.0000000000000000000000000000000000000000000000000004368 186.0
BYD1_k127_3431646_19 Domain of unknown function (DUF1841) - - - 0.0000000000000000000000000000000000000000000000001201 182.0
BYD1_k127_3431646_2 serine threonine protein kinase - - - 8.571e-304 951.0
BYD1_k127_3431646_20 Sulfurtransferase TusA - - - 0.000000000000000000000000000000000000000000000004068 177.0
BYD1_k127_3431646_21 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000007983 171.0
BYD1_k127_3431646_22 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000757 168.0
BYD1_k127_3431646_23 - - - - 0.000000000000000000000000000000000000000188 156.0
BYD1_k127_3431646_24 DsrC like protein K11179 - - 0.000000000000000000000000000000002043 134.0
BYD1_k127_3431646_25 DsrH like protein K07237 - - 0.000000000000000000000000000008876 126.0
BYD1_k127_3431646_26 Cas6 Crispr - - - 0.000000000000000000000001152 112.0
BYD1_k127_3431646_27 - - - - 0.000000000000000003075 87.0
BYD1_k127_3431646_3 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 5.56e-285 888.0
BYD1_k127_3431646_4 Nitrite and sulphite reductase 4Fe-4S domain K11180 - 1.8.99.5 6.204e-236 735.0
BYD1_k127_3431646_5 Nitrite and sulphite reductase 4Fe-4S domain K11181 - 1.8.99.5 4.811e-218 678.0
BYD1_k127_3431646_6 PLD-like domain K06132 - - 7.578e-199 634.0
BYD1_k127_3431646_7 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 488.0
BYD1_k127_3431646_8 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 359.0
BYD1_k127_3431646_9 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003716 337.0
BYD1_k127_3448091_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 5.253e-194 609.0
BYD1_k127_3448091_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 591.0
BYD1_k127_3448091_10 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003367 271.0
BYD1_k127_3448091_11 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000001774 215.0
BYD1_k127_3448091_12 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000004308 177.0
BYD1_k127_3448091_13 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00004519 48.0
BYD1_k127_3448091_2 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 522.0
BYD1_k127_3448091_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 472.0
BYD1_k127_3448091_4 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 452.0
BYD1_k127_3448091_5 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000996 414.0
BYD1_k127_3448091_6 Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 397.0
BYD1_k127_3448091_7 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009989 393.0
BYD1_k127_3448091_8 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 315.0
BYD1_k127_3448091_9 HDOD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 292.0
BYD1_k127_3450685_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 4.805e-282 879.0
BYD1_k127_3459114_0 Tex-like protein N-terminal domain K06959 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - 0.0 1160.0
BYD1_k127_3459114_1 PAS PAC and GAF sensor-containing diguanylate cyclase - - - 2.041e-247 780.0
BYD1_k127_3459114_10 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 456.0
BYD1_k127_3459114_11 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009144 434.0
BYD1_k127_3459114_12 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17229 - 1.8.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 394.0
BYD1_k127_3459114_13 PFAM extracellular solute-binding protein family 1 K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 374.0
BYD1_k127_3459114_14 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 345.0
BYD1_k127_3459114_15 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 335.0
BYD1_k127_3459114_16 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 337.0
BYD1_k127_3459114_17 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 324.0
BYD1_k127_3459114_18 Bacterial extracellular solute-binding proteins, family 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 306.0
BYD1_k127_3459114_19 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 316.0
BYD1_k127_3459114_2 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 540.0
BYD1_k127_3459114_20 branched-chain amino acid permease (azaleucine resistance) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008154 285.0
BYD1_k127_3459114_21 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002474 293.0
BYD1_k127_3459114_22 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000002777 237.0
BYD1_k127_3459114_23 Thioesterase-like superfamily K01075 - 3.1.2.23 0.000000000000000000000000000000000000000000000000000000000002531 212.0
BYD1_k127_3459114_24 Protocatechuate 4,5-dioxygenase K04100 - 1.13.11.8 0.0000000000000000000000000000000000000000000000000000002594 197.0
BYD1_k127_3459114_25 Belongs to the ArsC family K00537 - 1.20.4.1 0.00000000000000000000000000000000000000004475 154.0
BYD1_k127_3459114_26 metal cluster binding K06940 - - 0.000000000000000000000000000000000007585 138.0
BYD1_k127_3459114_27 Branched-chain amino acid transport protein (AzlD) - - - 0.000000000000000000000000000000001324 134.0
BYD1_k127_3459114_3 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 524.0
BYD1_k127_3459114_4 PFAM EAL domain, GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464 556.0
BYD1_k127_3459114_5 dehydrogenases and related proteins K10219 - 1.1.1.312 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006478 509.0
BYD1_k127_3459114_6 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 500.0
BYD1_k127_3459114_7 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009876 481.0
BYD1_k127_3459114_8 Protein of unknown function (DUF2863) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 462.0
BYD1_k127_3459114_9 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 439.0
BYD1_k127_3511029_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 482.0
BYD1_k127_3511029_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008024 343.0
BYD1_k127_3511029_2 50S ribosomal protein L4 K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 328.0
BYD1_k127_3511029_3 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000000000000000000000001383 163.0
BYD1_k127_3538542_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.053e-238 751.0
BYD1_k127_3538542_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 2.802e-224 703.0
BYD1_k127_3538542_10 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000001818 175.0
BYD1_k127_3538542_11 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000004884 145.0
BYD1_k127_3538542_12 Bacterial protein of unknown function (DUF883) - - - 0.000000000000000000000000000000001502 132.0
BYD1_k127_3538542_13 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000003861 132.0
BYD1_k127_3538542_14 SprA-related family - - - 0.000000000000000000000000000000437 127.0
BYD1_k127_3538542_15 - - - - 0.000000000000000000000000006478 119.0
BYD1_k127_3538542_16 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.000000000000000000002379 98.0
BYD1_k127_3538542_17 YqjK-like protein - - - 0.000000000004425 74.0
BYD1_k127_3538542_18 Cell shape determining protein, MreB Mrl family K03569 - - 0.000002371 57.0
BYD1_k127_3538542_2 ribonuclease, Rne Rng family K08301 - - 4.403e-218 698.0
BYD1_k127_3538542_3 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 438.0
BYD1_k127_3538542_4 dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 401.0
BYD1_k127_3538542_5 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 315.0
BYD1_k127_3538542_6 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000000555 245.0
BYD1_k127_3538542_7 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000000003566 229.0
BYD1_k127_3538542_8 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000000000000000000003968 228.0
BYD1_k127_3538542_9 NlpC/P60 family - - - 0.00000000000000000000000000000000000000000000000000001452 194.0
BYD1_k127_3547949_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008245 481.0
BYD1_k127_3547949_1 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 340.0
BYD1_k127_3547949_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 287.0
BYD1_k127_3547949_3 PFAM PEGA domain protein - - - 0.0000000004131 65.0
BYD1_k127_3563860_0 PrkA family serine protein kinase K07180 - - 0.0 1161.0
BYD1_k127_3563860_1 Ferrous iron transport protein B K04759 - - 4.274e-281 879.0
BYD1_k127_3563860_10 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004548 403.0
BYD1_k127_3563860_11 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 378.0
BYD1_k127_3563860_12 chemotaxis, protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000001639 241.0
BYD1_k127_3563860_13 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000000005204 221.0
BYD1_k127_3563860_14 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.000000000000000000000000000000000000000000000000000000004091 207.0
BYD1_k127_3563860_15 Protein of unknown function (DUF1282) - - - 0.000000000000000000000000000000000000000000000007577 179.0
BYD1_k127_3563860_16 Phasin protein - - - 0.000000000000000000000000000000000000004134 152.0
BYD1_k127_3563860_17 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000000000000000003022 124.0
BYD1_k127_3563860_18 Protein of unknown function (DUF1161) - - - 0.00000000000006095 84.0
BYD1_k127_3563860_19 - - - - 0.00000003221 66.0
BYD1_k127_3563860_2 helicase K03722 - 3.6.4.12 3.148e-279 873.0
BYD1_k127_3563860_3 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 1.19e-258 811.0
BYD1_k127_3563860_4 SpoVR family - - - 8.144e-257 805.0
BYD1_k127_3563860_5 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 7.98e-246 762.0
BYD1_k127_3563860_6 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 2.782e-206 653.0
BYD1_k127_3563860_7 Belongs to the thiolase family K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 578.0
BYD1_k127_3563860_8 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 518.0
BYD1_k127_3563860_9 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 458.0
BYD1_k127_3564475_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1370.0
BYD1_k127_3564475_1 Formate dehydrogenase N, transmembrane K00124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 544.0
BYD1_k127_3564475_2 Prokaryotic cytochrome b561 K00127 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 360.0
BYD1_k127_3564475_3 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 328.0
BYD1_k127_3564475_4 Protein involved in formate dehydrogenase formation K02380 - - 0.00000000000000000000000002258 115.0
BYD1_k127_3564475_5 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.0000000000000000000001695 98.0
BYD1_k127_3614043_0 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 - 6.4.1.1 8.297e-308 951.0
BYD1_k127_3614043_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 4.256e-227 727.0
BYD1_k127_3614043_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 289.0
BYD1_k127_3614043_3 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.000002465 49.0
BYD1_k127_3668281_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0 1015.0
BYD1_k127_3668281_1 Flagellar biosynthesis regulator FlhF K02404 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 451.0
BYD1_k127_3668281_2 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 409.0
BYD1_k127_3668281_3 COG0643 Chemotaxis protein histidine kinase and related kinases K03407 - 2.7.13.3 0.00000000000000000000000000000000000001494 145.0
BYD1_k127_3671994_0 Putative diguanylate phosphodiesterase - - - 4.713e-291 918.0
BYD1_k127_3671994_1 Alanine dehydrogenase/PNT, N-terminal domain K00324 - 1.6.1.2 1.482e-270 841.0
BYD1_k127_3671994_10 PFAM Aminotransferase class I and II K14287 - 2.6.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 524.0
BYD1_k127_3671994_11 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007028 505.0
BYD1_k127_3671994_12 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 469.0
BYD1_k127_3671994_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009977 438.0
BYD1_k127_3671994_14 PFAM FAD linked oxidase domain protein K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 428.0
BYD1_k127_3671994_15 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006342 414.0
BYD1_k127_3671994_16 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009944 402.0
BYD1_k127_3671994_17 GfdT protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 352.0
BYD1_k127_3671994_18 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 328.0
BYD1_k127_3671994_19 phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 306.0
BYD1_k127_3671994_2 Asparagine synthase K01953 - 6.3.5.4 2.399e-269 840.0
BYD1_k127_3671994_20 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 303.0
BYD1_k127_3671994_21 Chromate resistance - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002191 252.0
BYD1_k127_3671994_22 RDD family - - - 0.0000000000000000000000000000000000000000000000000000000000005987 214.0
BYD1_k127_3671994_23 PFAM Methyltransferase type 12 - - - 0.00000000000000000000000000000000000000000000000000000001869 220.0
BYD1_k127_3671994_24 deaminase zinc-binding - - - 0.0000000000000000000000000000000000000000000000000000003749 201.0
BYD1_k127_3671994_25 Peptidyl-prolyl cis-trans K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000005468 198.0
BYD1_k127_3671994_26 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000004502 203.0
BYD1_k127_3671994_27 CrcB-like protein, Camphor Resistance (CrcB) - - - 0.00000000000000000000000000000000000000000000000003041 181.0
BYD1_k127_3671994_28 MaoC like domain - - - 0.00000000000000000000000000000000000005027 147.0
BYD1_k127_3671994_29 PFAM PEGA domain protein - - - 0.0000000000000000000000000000000000001494 154.0
BYD1_k127_3671994_3 Glycolate oxidase subunit GlcD K00104 - 1.1.3.15 8.113e-241 752.0
BYD1_k127_3671994_30 Peptidase S24-like - - - 0.0000000000000000000000000000000002019 138.0
BYD1_k127_3671994_31 - - - - 0.000000000000000000000000006734 115.0
BYD1_k127_3671994_32 - - - - 0.00000000000000218 78.0
BYD1_k127_3671994_33 - - - - 0.000000000000002283 78.0
BYD1_k127_3671994_4 Chromate transporter K07240 - - 3.231e-213 674.0
BYD1_k127_3671994_5 glycolate oxidase iron-sulfur subunit K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003924 584.0
BYD1_k127_3671994_6 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 575.0
BYD1_k127_3671994_7 Major Facilitator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 548.0
BYD1_k127_3671994_8 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 557.0
BYD1_k127_3671994_9 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 525.0
BYD1_k127_3674812_0 Sodium:solute symporter family K14393 - - 8.661e-318 985.0
BYD1_k127_3674812_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 5.546e-304 937.0
BYD1_k127_3674812_10 Transcriptional regulatory protein, C terminal K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000004196 233.0
BYD1_k127_3674812_11 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000004723 222.0
BYD1_k127_3674812_12 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000001399 226.0
BYD1_k127_3674812_13 Protein of unknown function (DUF418) K07148 - - 0.0000000000000000000000000000000000000000000000000004355 201.0
BYD1_k127_3674812_14 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000007638 173.0
BYD1_k127_3674812_15 Protein of unknown function, DUF485 - - - 0.000000000000000000000000000000000000001772 149.0
BYD1_k127_3674812_16 ABC-type phosphate transport system, periplasmic component - - - 0.00000000000000000000000000000000000006013 149.0
BYD1_k127_3674812_17 - - - - 0.000000000000000000000000000000002694 132.0
BYD1_k127_3674812_18 Domain of unknown function (DUF4212) - - - 0.00000000000000000000000000000001003 137.0
BYD1_k127_3674812_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 3.753e-275 856.0
BYD1_k127_3674812_20 acetyltransferase K22441 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0044424,GO:0044464,GO:0048583,GO:0050789,GO:0065007,GO:0080134,GO:1902882 2.3.1.57 0.000000000832 68.0
BYD1_k127_3674812_21 Glycine-zipper domain - - - 0.000000001931 60.0
BYD1_k127_3674812_22 - - - - 0.0000005263 51.0
BYD1_k127_3674812_23 - - - - 0.000003047 55.0
BYD1_k127_3674812_3 Citrate transporter - - - 1.378e-216 680.0
BYD1_k127_3674812_4 PFAM NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006115 577.0
BYD1_k127_3674812_5 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 543.0
BYD1_k127_3674812_6 Alpha/beta hydrolase family K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006773 487.0
BYD1_k127_3674812_7 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 472.0
BYD1_k127_3674812_8 GGDEF domain K20961 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 316.0
BYD1_k127_3674812_9 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003519 282.0
BYD1_k127_3704963_0 Collagenase K08303 - - 2.844e-292 915.0
BYD1_k127_3704963_1 Patatin-like phospholipase K07001 - - 1.004e-288 903.0
BYD1_k127_3704963_10 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008603 485.0
BYD1_k127_3704963_11 Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress K05916,K07006,K21832 - 1.14.12.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 479.0
BYD1_k127_3704963_12 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 464.0
BYD1_k127_3704963_13 thiosulfate sulfurtransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 466.0
BYD1_k127_3704963_14 chorismate binding enzyme K01665,K02619,K03342,K13503,K13950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.6.1.85,4.1.3.27,4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 465.0
BYD1_k127_3704963_15 Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity K14540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005776 449.0
BYD1_k127_3704963_16 Protein of unknown function (DUF808) K09781 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 422.0
BYD1_k127_3704963_17 ABC transporter K06020 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 385.0
BYD1_k127_3704963_18 Transcriptional regulatory protein, C terminal K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006301 368.0
BYD1_k127_3704963_19 Class III cytochrome C family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009243 368.0
BYD1_k127_3704963_2 Histidine kinase - - - 2.199e-242 777.0
BYD1_k127_3704963_20 cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 338.0
BYD1_k127_3704963_21 Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 335.0
BYD1_k127_3704963_22 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 333.0
BYD1_k127_3704963_23 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 294.0
BYD1_k127_3704963_24 DNA-3-methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 284.0
BYD1_k127_3704963_25 Belongs to the glucose-6-phosphate 1-epimerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008384 267.0
BYD1_k127_3704963_26 cell redox homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001954 265.0
BYD1_k127_3704963_27 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001438 252.0
BYD1_k127_3704963_28 Dihaem cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000007666 228.0
BYD1_k127_3704963_29 - - - - 0.00000000000000000000000000000000000000000000000004452 186.0
BYD1_k127_3704963_3 DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation K05592 - 3.6.4.13 5.248e-237 747.0
BYD1_k127_3704963_30 Domain of unknown function (DUF1924) - - - 0.0000000000000000000000000000000000000000006734 160.0
BYD1_k127_3704963_31 HEAT repeats - - - 0.0000000000000000000000000000000000002136 145.0
BYD1_k127_3704963_32 - - - - 0.0000000000000000000000000000000172 129.0
BYD1_k127_3704963_33 Propeptide PepSY amd peptidase M4 - - - 0.00000000000000000000000000000002231 130.0
BYD1_k127_3704963_4 Cytochrome c bacterial - - - 5.962e-231 728.0
BYD1_k127_3704963_5 carbohydrate transport K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 582.0
BYD1_k127_3704963_6 ferric reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 589.0
BYD1_k127_3704963_7 Histidine kinase K07637 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 559.0
BYD1_k127_3704963_8 - K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 557.0
BYD1_k127_3704963_9 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 550.0
BYD1_k127_3825194_0 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 437.0
BYD1_k127_3825194_1 Thioredoxin-like domain K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000001879 226.0
BYD1_k127_3825194_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000004026 207.0
BYD1_k127_3825194_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.0000000000000000000000696 98.0
BYD1_k127_3896375_0 Malate synthase K01638 - 2.3.3.9 5.14e-322 988.0
BYD1_k127_3896375_1 Diguanylate cyclase - - - 5.88e-236 749.0
BYD1_k127_3896375_2 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 486.0
BYD1_k127_3896375_3 COG1538 Outer membrane protein K12543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005878 474.0
BYD1_k127_3896375_4 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 406.0
BYD1_k127_3896375_5 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 332.0
BYD1_k127_3896375_6 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.00000000000000000000000000000000000000000000000000000000000000004379 236.0
BYD1_k127_3918550_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.063e-254 790.0
BYD1_k127_3918550_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 2.2e-252 782.0
BYD1_k127_3918550_2 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 2.04e-200 634.0
BYD1_k127_3918550_3 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000006971 201.0
BYD1_k127_3918550_5 - - - - 0.0000000000000000000000000000000001949 134.0
BYD1_k127_3918550_6 - - - - 0.000000000000000000000000005795 113.0
BYD1_k127_3918550_7 - - - - 0.00000000000000000000000003252 113.0
BYD1_k127_3918550_8 - - - - 0.00000000000000000000000004247 108.0
BYD1_k127_3921249_0 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 2.385e-302 930.0
BYD1_k127_3921249_1 Nitrogenase component 1 type Oxidoreductase K02586 - 1.18.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009194 409.0
BYD1_k127_3921249_10 - - - - 0.00000003816 64.0
BYD1_k127_3921249_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 396.0
BYD1_k127_3921249_3 phospholipase K01058 - 3.1.1.32,3.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 338.0
BYD1_k127_3921249_4 Dinitrogenase iron-molybdenum cofactor, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 302.0
BYD1_k127_3921249_6 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000113 198.0
BYD1_k127_3921249_7 - - - - 0.000000000000000000000000000000000000000000004063 183.0
BYD1_k127_3921249_8 4Fe-4S binding domain - - - 0.000000000000000000000000000001796 121.0
BYD1_k127_3921249_9 nitrogen fixation K02593 - - 0.0000000000000000000000000003845 124.0
BYD1_k127_392652_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1545.0
BYD1_k127_392652_1 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007352 591.0
BYD1_k127_392652_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004638 595.0
BYD1_k127_392652_3 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 351.0
BYD1_k127_392652_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 352.0
BYD1_k127_392652_5 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 346.0
BYD1_k127_392652_6 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.0000000000000000000000000000000008141 134.0
BYD1_k127_3940380_0 Alpha-2-Macroglobulin K06894 - - 0.0 2333.0
BYD1_k127_3940380_1 methionine synthase K00548 - 2.1.1.13 0.0 1925.0
BYD1_k127_3940380_10 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 566.0
BYD1_k127_3940380_11 Putative diguanylate phosphodiesterase K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005427 567.0
BYD1_k127_3940380_12 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005598 524.0
BYD1_k127_3940380_13 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 527.0
BYD1_k127_3940380_14 amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 520.0
BYD1_k127_3940380_15 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 487.0
BYD1_k127_3940380_16 Belongs to the methyltransferase superfamily K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 476.0
BYD1_k127_3940380_17 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 459.0
BYD1_k127_3940380_18 ArgK protein K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 444.0
BYD1_k127_3940380_19 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 421.0
BYD1_k127_3940380_2 Methylmalonyl-CoA mutase large subunit K01847 - 5.4.99.2 0.0 1150.0
BYD1_k127_3940380_20 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 410.0
BYD1_k127_3940380_21 Drug resistance transporter Bcr CflA subfamily K07552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 398.0
BYD1_k127_3940380_22 Neutral zinc metallopeptidase K07054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007484 388.0
BYD1_k127_3940380_23 Alpha beta hydrolase K00433 - 1.11.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 365.0
BYD1_k127_3940380_24 branched-chain amino acid K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007744 379.0
BYD1_k127_3940380_25 epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 332.0
BYD1_k127_3940380_26 enoyl-CoA hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005892 329.0
BYD1_k127_3940380_27 COG0346 Lactoylglutathione lyase and related lyases K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 287.0
BYD1_k127_3940380_28 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003595 273.0
BYD1_k127_3940380_29 Haloacid dehalogenase-like hydrolase K20881 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002991 271.0
BYD1_k127_3940380_3 Penicillin-Binding Protein C-terminus Family K05367 - 2.4.1.129 0.0 1101.0
BYD1_k127_3940380_30 Branched-chain amino acid transport K01996 GO:0000166,GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005488,GO:0005524,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008144,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015188,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015823,GO:0015829,GO:0015849,GO:0015893,GO:0017076,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034220,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0097159,GO:0097367,GO:0098655,GO:0098656,GO:1901265,GO:1901363,GO:1902475,GO:1903714,GO:1903785,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000000000000000000000000000001165 237.0
BYD1_k127_3940380_31 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000005071 212.0
BYD1_k127_3940380_32 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000005708 218.0
BYD1_k127_3940380_33 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000000006877 209.0
BYD1_k127_3940380_34 - - - - 0.000000000000000000000000000000000000000000000000001224 194.0
BYD1_k127_3940380_35 - - - - 0.000000000000000000000000000000000000000002273 169.0
BYD1_k127_3940380_36 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000004213 158.0
BYD1_k127_3940380_37 - - - - 0.0000000000000000000000000000000000000001135 162.0
BYD1_k127_3940380_38 Cytochrome c K08738 - - 0.0000000000000000000000000000003708 125.0
BYD1_k127_3940380_39 Domain of unknown function (DUF1840) - - - 0.000000000000000000001334 97.0
BYD1_k127_3940380_4 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0 1031.0
BYD1_k127_3940380_40 - - - - 0.000000000000008907 80.0
BYD1_k127_3940380_41 Mg chelatase subunit ChlI K07391 - - 0.00000000007678 62.0
BYD1_k127_3940380_5 carboxylase K01965 - 6.4.1.3 1.447e-319 992.0
BYD1_k127_3940380_6 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 2.31e-304 936.0
BYD1_k127_3940380_7 pyridine nucleotide-disulphide oxidoreductase K17218 GO:0003674,GO:0003824,GO:0003955,GO:0005488,GO:0005515,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0019646,GO:0022900,GO:0022904,GO:0042802,GO:0044237,GO:0045333,GO:0055114 1.8.5.4 1.285e-227 709.0
BYD1_k127_3940380_8 Peptidase family M48 - - - 2.716e-217 686.0
BYD1_k127_3940380_9 twitching motility protein K02670 - - 8.105e-207 647.0
BYD1_k127_3942720_0 glutamate synthase, alpha subunit domain protein K00265 - 1.4.1.13,1.4.1.14 0.0 2267.0
BYD1_k127_3942720_1 AcrB/AcrD/AcrF family K03296,K07788,K07789,K21133 - - 0.0 1429.0
BYD1_k127_3942720_10 MacB-like periplasmic core domain K02004 - - 2.185e-195 628.0
BYD1_k127_3942720_11 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 602.0
BYD1_k127_3942720_12 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006872 563.0
BYD1_k127_3942720_13 Pilus assembly protein K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 507.0
BYD1_k127_3942720_14 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 505.0
BYD1_k127_3942720_15 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007019 481.0
BYD1_k127_3942720_16 phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 473.0
BYD1_k127_3942720_17 ZIP Zinc transporter K16267 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 422.0
BYD1_k127_3942720_18 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 413.0
BYD1_k127_3942720_19 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 395.0
BYD1_k127_3942720_2 COG0480 Translation elongation factors (GTPases) K02355 - - 0.0 1055.0
BYD1_k127_3942720_20 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 393.0
BYD1_k127_3942720_21 Periplasmic solute binding protein K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 380.0
BYD1_k127_3942720_22 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 351.0
BYD1_k127_3942720_23 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 349.0
BYD1_k127_3942720_24 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 330.0
BYD1_k127_3942720_25 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008253 316.0
BYD1_k127_3942720_26 Pilus assembly protein PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001551 275.0
BYD1_k127_3942720_27 ABC-3 protein K02075 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002809 252.0
BYD1_k127_3942720_28 Protein of unknown function, DUF484 K09921 - - 0.0000000000000000000000000000000000000000000000000000000000000000007522 234.0
BYD1_k127_3942720_29 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.000000000000000000000000000000000000000000000000000000000000000005513 232.0
BYD1_k127_3942720_3 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.0 1036.0
BYD1_k127_3942720_30 fimbrial biogenesis protein PilN K02663 - - 0.00000000000000000000000000000000000000000000000000000000000000005439 228.0
BYD1_k127_3942720_31 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000000000000000000000000000000002452 221.0
BYD1_k127_3942720_32 Protein of unknown function (DUF3299) K09950 - - 0.00000000000000000000000000000000000000000000000000000000000004246 223.0
BYD1_k127_3942720_33 Protein of unknown function (DUF2796) - - - 0.0000000000000000000000000000000000000000000000000000000001825 207.0
BYD1_k127_3942720_34 acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000006874 192.0
BYD1_k127_3942720_35 pilus assembly protein PilP K02665 - - 0.0000000000000000000000000000000000000000000000003952 182.0
BYD1_k127_3942720_36 response to antibiotic - - - 0.0000000000000000000000000000000000000000000005059 184.0
BYD1_k127_3942720_37 Belongs to the frataxin K06202 - - 0.0000000000000000000000000000000000000003646 151.0
BYD1_k127_3942720_38 Ferric uptake regulator family K03711 - - 0.0000000000000000000000000000002084 131.0
BYD1_k127_3942720_39 PFAM Copper binding periplasmic protein CusF - - - 0.000000000000000005404 90.0
BYD1_k127_3942720_4 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.325e-263 828.0
BYD1_k127_3942720_5 Domain of Unknown Function (DUF748) - - - 1.022e-262 841.0
BYD1_k127_3942720_6 glutamate synthase K00266 - 1.4.1.13,1.4.1.14 6.653e-262 813.0
BYD1_k127_3942720_7 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.231e-224 702.0
BYD1_k127_3942720_8 Type 4 fimbrial biogenesis protein K02666 - - 5.289e-216 696.0
BYD1_k127_3942720_9 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 1.17e-198 627.0
BYD1_k127_3978084_0 5'-nucleotidase, C-terminal domain K11751,K17224 - 3.1.3.5,3.6.1.45 7.111e-292 903.0
BYD1_k127_3978084_1 PUA-like domain K00958 - 2.7.7.4 3.516e-238 741.0
BYD1_k127_3978084_10 Cytochrome c K17223 - - 0.000000000000000000000000000000000000000000000000000000000003411 215.0
BYD1_k127_3978084_11 phosphohistidine phosphatase, SixA K08296 - - 0.000000000000000000000000000000000000000000000000000021 195.0
BYD1_k127_3978084_12 Sulfur oxidation protein SoxY K17226 - - 0.000000000000000000000000000000000000000007658 160.0
BYD1_k127_3978084_13 oxidation protein K17227 - - 0.00000000000000000000000000000000003391 137.0
BYD1_k127_3978084_14 Adenosine-5'-phosphosulfate reductase beta subunit K00395 - 1.8.99.2 0.0000000000000000000000000000000117 126.0
BYD1_k127_3978084_15 Pfam:N_methyl_3 K02650 - - 0.000000000000000000000000000001245 126.0
BYD1_k127_3978084_16 Prokaryotic N-terminal methylation motif - - - 0.0000000000000000000000001346 111.0
BYD1_k127_3978084_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 501.0
BYD1_k127_3978084_3 Peptidase M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007491 487.0
BYD1_k127_3978084_4 CHAD domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 375.0
BYD1_k127_3978084_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008156 343.0
BYD1_k127_3978084_6 abc transporter K02003,K05685 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 323.0
BYD1_k127_3978084_7 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007165 290.0
BYD1_k127_3978084_8 C-type monoheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the intermediary formation of conspicuous sulfur globules inside of the cells - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004366 261.0
BYD1_k127_3978084_9 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000003109 252.0
BYD1_k127_3986390_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 2.985e-264 822.0
BYD1_k127_3986390_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000635 381.0
BYD1_k127_3986390_10 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000001663 156.0
BYD1_k127_3986390_11 Protein of unknown function DUF45 K07043 - - 0.000009895 55.0
BYD1_k127_3986390_12 glycosyl transferase - - - 0.000191 50.0
BYD1_k127_3986390_2 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006314 329.0
BYD1_k127_3986390_3 diguanylate cyclase K13590 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 312.0
BYD1_k127_3986390_4 Acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000511 303.0
BYD1_k127_3986390_5 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003576 279.0
BYD1_k127_3986390_6 PFAM cytochrome B561 K12262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001693 276.0
BYD1_k127_3986390_7 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001796 254.0
BYD1_k127_3986390_8 Protein of unknown function DUF45 K07043 - - 0.0000000000000000000000000000000000000000000000000000000000000000287 237.0
BYD1_k127_3986390_9 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000002894 229.0
BYD1_k127_3986824_0 Heavy-metal-associated domain K17686 - 3.6.3.54 0.0 1069.0
BYD1_k127_3986824_1 TonB dependent receptor K02014 - - 2.603e-299 935.0
BYD1_k127_3986824_10 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 298.0
BYD1_k127_3986824_11 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009305 302.0
BYD1_k127_3986824_12 TonB dependent receptor K02014,K16087,K16089,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 310.0
BYD1_k127_3986824_13 Putative bacterial lipoprotein (DUF799) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009346 289.0
BYD1_k127_3986824_14 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 284.0
BYD1_k127_3986824_15 NosL - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001627 286.0
BYD1_k127_3986824_16 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001289 268.0
BYD1_k127_3986824_17 lipoprotein involved in nitrous oxide reduction - - - 0.00000000000000000000000000000000000000000000000000000000000008595 222.0
BYD1_k127_3986824_18 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K15012 - - 0.0000000000000000000000000000000000000000000000003313 181.0
BYD1_k127_3986824_19 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000001629 174.0
BYD1_k127_3986824_2 Histidine kinase - - - 4.875e-215 684.0
BYD1_k127_3986824_20 - - - - 0.00000000000000000000000000000000000000001357 160.0
BYD1_k127_3986824_21 - - - - 0.0000000000000000000000000000000003237 134.0
BYD1_k127_3986824_22 EF hand - - - 0.0000000000000000000000000002931 119.0
BYD1_k127_3986824_23 (Lipo)protein - - - 0.000000000000000000000000003361 114.0
BYD1_k127_3986824_24 Protein of unknown function, DUF485 - - - 0.0000000000000000000008417 96.0
BYD1_k127_3986824_25 - - - - 0.0000000000007753 82.0
BYD1_k127_3986824_26 - - - - 0.00000000000377 70.0
BYD1_k127_3986824_3 4Fe-4S single cluster domain - - - 1.664e-196 619.0
BYD1_k127_3986824_4 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 551.0
BYD1_k127_3986824_5 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007111 545.0
BYD1_k127_3986824_6 Cytochrome c, class I K08738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 513.0
BYD1_k127_3986824_7 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 347.0
BYD1_k127_3986824_8 Curli production assembly/transport component CsgG - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003374 334.0
BYD1_k127_3986824_9 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 334.0
BYD1_k127_401500_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K21307 - 1.8.5.6 0.0 1753.0
BYD1_k127_401500_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1502.0
BYD1_k127_401500_10 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 550.0
BYD1_k127_401500_11 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 488.0
BYD1_k127_401500_12 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007128 482.0
BYD1_k127_401500_13 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005798 482.0
BYD1_k127_401500_14 PFAM 4Fe-4S K00184,K21308 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 471.0
BYD1_k127_401500_15 PFAM DMSO reductase anchor subunit (DmsC) K21309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 447.0
BYD1_k127_401500_16 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 447.0
BYD1_k127_401500_17 Predicted permease YjgP/YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 445.0
BYD1_k127_401500_18 Permease YjgP YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 433.0
BYD1_k127_401500_19 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 345.0
BYD1_k127_401500_2 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 9.035e-318 989.0
BYD1_k127_401500_20 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046 347.0
BYD1_k127_401500_21 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 310.0
BYD1_k127_401500_22 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 282.0
BYD1_k127_401500_23 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000217 277.0
BYD1_k127_401500_24 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001502 274.0
BYD1_k127_401500_25 DsrE/DsrF/DrsH-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003181 273.0
BYD1_k127_401500_26 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003013 272.0
BYD1_k127_401500_27 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000000000000001525 225.0
BYD1_k127_401500_28 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000000000000000001924 180.0
BYD1_k127_401500_29 TIGRFAM transcriptional regulator EpsA - - - 0.00000000000000000000000000000000000000000000000573 183.0
BYD1_k127_401500_3 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 1.059e-312 969.0
BYD1_k127_401500_30 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000422 174.0
BYD1_k127_401500_31 endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000006419 164.0
BYD1_k127_401500_32 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.000000000000000000000000000000000000005244 160.0
BYD1_k127_401500_33 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000000000005249 146.0
BYD1_k127_401500_34 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000001732 157.0
BYD1_k127_401500_35 Sulfurtransferase TusA K04085 - - 0.000000000000000000000000000000002696 130.0
BYD1_k127_401500_36 - - - - 0.0000000000000000000000000007772 117.0
BYD1_k127_401500_37 Protein of unknown function (DUF3106) - - - 0.000000000000000000000000001159 118.0
BYD1_k127_401500_38 membrane protein domain - - - 0.000000000000000000000004443 107.0
BYD1_k127_401500_39 Protein of unknown function (DUF3619) - - - 0.00000000000000009043 86.0
BYD1_k127_401500_4 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 1.265e-252 789.0
BYD1_k127_401500_40 Sporulation related domain - - - 0.000000000000003681 85.0
BYD1_k127_401500_41 Protein of unknown function (DUF2802) - - - 0.000000000003565 74.0
BYD1_k127_401500_42 - - - - 0.0000004425 61.0
BYD1_k127_401500_5 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 1.109e-233 732.0
BYD1_k127_401500_6 Glucose inhibited division protein A K03388,K16885 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 9.62e-212 666.0
BYD1_k127_401500_7 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 7.765e-197 618.0
BYD1_k127_401500_8 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 1.786e-195 613.0
BYD1_k127_401500_9 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009578 553.0
BYD1_k127_4063289_0 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0 1043.0
BYD1_k127_4063289_1 FAD-dependent pyridine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 529.0
BYD1_k127_4063289_2 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001899 278.0
BYD1_k127_4063289_3 Cytochrome c K08738 - - 0.0000000000000000000000000009469 113.0
BYD1_k127_4063289_4 Mut7-C ubiquitin - - - 0.00000000000000000000006724 109.0
BYD1_k127_4166549_0 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00124,K18005 - 1.12.1.2 6.779e-275 857.0
BYD1_k127_4166549_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00436 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 4.76e-254 797.0
BYD1_k127_4166549_10 beta-fructofuranosidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005234 315.0
BYD1_k127_4166549_11 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 296.0
BYD1_k127_4166549_12 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002689 276.0
BYD1_k127_4166549_13 Catalyzes the synthesis of activated sulfate K00860 - 2.7.1.25 0.0000000000000000000000000000000000000000000000000000000000000000004234 233.0
BYD1_k127_4166549_14 maturation - - - 0.000000000000000000000000000000000000000000000000001848 186.0
BYD1_k127_4166549_15 OmpA family K03286 - - 0.0000000000000000000000000000000000000000000000301 182.0
BYD1_k127_4166549_16 Protein of unknown function (DUF563) - - - 0.000000000000000000000000000006991 138.0
BYD1_k127_4166549_17 Tellurite resistance protein TehB - - - 0.0000000000001225 79.0
BYD1_k127_4166549_2 Bifunctional enoyl-CoA hydratase phosphate acetyltransferase K00625 - 2.3.1.8 1.244e-206 653.0
BYD1_k127_4166549_3 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 2.787e-198 624.0
BYD1_k127_4166549_4 GGDEF domain K13590 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 610.0
BYD1_k127_4166549_5 formate dehydrogenase K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 556.0
BYD1_k127_4166549_6 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 494.0
BYD1_k127_4166549_7 Histidine kinase K07675 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008813 426.0
BYD1_k127_4166549_8 4Fe-4S single cluster domain K18006 - 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 379.0
BYD1_k127_4166549_9 NADH ubiquinone oxidoreductase, 20 K18007 - 1.12.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 329.0
BYD1_k127_4205825_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.0 1703.0
BYD1_k127_4205825_1 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 496.0
BYD1_k127_4205825_2 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002846 311.0
BYD1_k127_4205825_3 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004533 275.0
BYD1_k127_4205825_4 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002109 269.0
BYD1_k127_4205825_5 Domain of unknown function (DUF309) - - - 0.000000000000000000000000000000000000000000000000000000000000000002574 238.0
BYD1_k127_4205825_6 Histidine biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000001136 207.0
BYD1_k127_4294670_0 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007014 320.0
BYD1_k127_4294670_1 chemotaxis sensory transducer K03406,K03776,K05874 - - 0.00000000001892 67.0
BYD1_k127_4305752_0 Glycosyltransferase like family 2 K20444 - - 1.203e-230 760.0
BYD1_k127_4305752_1 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 613.0
BYD1_k127_4305752_10 His Kinase A (phosphoacceptor) domain K10942 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000006127 206.0
BYD1_k127_4305752_11 Flagellar hook-length control protein FliK - - - 0.000000000000000000000000000000000000000000000000000000001764 214.0
BYD1_k127_4305752_12 glycolate biosynthetic process K01091,K06019,K16017,K22292 - 3.1.3.105,3.1.3.18,3.6.1.1 0.00000000000000000000000000000000000000003489 160.0
BYD1_k127_4305752_13 Flagellar protein FliS K02422 - - 0.00000000000000000000000000000000000005775 147.0
BYD1_k127_4305752_14 FlhB HrpN YscU SpaS Family K04061 - - 0.00000000000000000000000000000002241 128.0
BYD1_k127_4305752_15 Flagellar hook-basal body K02408 - - 0.000000000000000000000000000000131 126.0
BYD1_k127_4305752_16 Glycosyltransferase like family 2 - - - 0.000000000000000000002182 111.0
BYD1_k127_4305752_17 Flagellar protein FliT K02423 - - 0.000000000000000006231 90.0
BYD1_k127_4305752_18 PFAM flagellar protein FlaG protein K06603 - - 0.00000000000000005855 86.0
BYD1_k127_4305752_19 Sulfotransferase family - - - 0.0000007908 60.0
BYD1_k127_4305752_2 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005344 530.0
BYD1_k127_4305752_3 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 522.0
BYD1_k127_4305752_4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 489.0
BYD1_k127_4305752_5 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 415.0
BYD1_k127_4305752_6 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 366.0
BYD1_k127_4305752_7 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004597 318.0
BYD1_k127_4305752_8 Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility - - - 0.0000000000000000000000000000000000000000000000000000000000000000003168 237.0
BYD1_k127_4305752_9 WxcM-like, C-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000004532 230.0
BYD1_k127_4375857_0 NADH:flavin oxidoreductase / NADH oxidase family K00219 - 1.3.1.34 1.285e-312 968.0
BYD1_k127_4375857_1 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007497 442.0
BYD1_k127_4375857_2 AraC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 421.0
BYD1_k127_4375857_3 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 302.0
BYD1_k127_4375857_4 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001305 276.0
BYD1_k127_4375857_5 B-1 B cell differentiation K07126,K13582 - - 0.0006473 51.0
BYD1_k127_4403090_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1069.0
BYD1_k127_4403090_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 400.0
BYD1_k127_4403090_2 cytochrome oxidase assembly K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 336.0
BYD1_k127_4403090_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002034 273.0
BYD1_k127_4403090_4 cytochrome c oxidase, subunit III K02276 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 1.9.3.1 0.000000000000000000000000000000000000000000000109 177.0
BYD1_k127_4403090_5 PFAM cytochrome c - - - 0.0000000000000000000000000000000000000009895 156.0
BYD1_k127_4403090_6 signal sequence binding K07152 - - 0.0000000000311 68.0
BYD1_k127_4420553_0 Aminotransferase K14260 - 2.6.1.2,2.6.1.66 1.712e-234 729.0
BYD1_k127_4420553_1 homoserine dehydrogenase K00003 - 1.1.1.3 1.311e-233 733.0
BYD1_k127_4420553_10 - - - - 0.0000000000000002944 79.0
BYD1_k127_4420553_2 Threonine synthase K01733 - 4.2.3.1 6.575e-226 724.0
BYD1_k127_4420553_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 599.0
BYD1_k127_4420553_4 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005746 570.0
BYD1_k127_4420553_5 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 476.0
BYD1_k127_4420553_6 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 391.0
BYD1_k127_4420553_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 314.0
BYD1_k127_4420553_8 Glycosyl transferase family 2 K10012 - 2.4.2.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000791 271.0
BYD1_k127_4420553_9 Small multidrug resistance - - - 0.0000000000000000000000000000000000000000000000000004641 189.0
BYD1_k127_4513431_0 ATPase FliI YscN family K02412 - 3.6.3.14 3.183e-215 679.0
BYD1_k127_4513431_1 Flagellar basal body rod FlgEFG protein C-terminal K02396 - - 6.242e-196 630.0
BYD1_k127_4513431_10 basal body rod protein K02391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 323.0
BYD1_k127_4513431_11 Flagellar motor protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 306.0
BYD1_k127_4513431_12 flagellar motor K02556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002546 276.0
BYD1_k127_4513431_13 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003049 279.0
BYD1_k127_4513431_14 Flagellar rod assembly protein muramidase FlgJ K02395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006998 259.0
BYD1_k127_4513431_15 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000005875 229.0
BYD1_k127_4513431_16 His Kinase A (phosphoacceptor) domain K10942 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000003554 229.0
BYD1_k127_4513431_17 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.00000000000000000000000000000000000000000000000000000000000002863 223.0
BYD1_k127_4513431_18 Flagellar hook capping protein - N-terminal region K02389 - - 0.000000000000000000000000000000000000000000000000000000004962 206.0
BYD1_k127_4513431_19 Flagellar motor switch K02417 - - 0.00000000000000000000000000000000000000000000000000004626 190.0
BYD1_k127_4513431_2 The M ring may be actively involved in energy transduction K02409 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 547.0
BYD1_k127_4513431_20 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000000000000000000000000000000000000000000005047 190.0
BYD1_k127_4513431_21 Flagellar assembly protein FliH K02411 - - 0.00000000000000000000000000000000000000000001354 169.0
BYD1_k127_4513431_22 Flagellar export protein FliJ K02413 - - 0.00000000000000000000000000000000000000005254 156.0
BYD1_k127_4513431_23 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000006955 152.0
BYD1_k127_4513431_24 Role in flagellar biosynthesis K02420 - - 0.00000000000000000000000000000000000003251 144.0
BYD1_k127_4513431_25 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.000000000000000000000000000000001216 134.0
BYD1_k127_4513431_26 Flagellar hook-length control protein FliK K02414 - - 0.000000000000000000000002296 116.0
BYD1_k127_4513431_27 - - - - 0.00000000000000000000001519 116.0
BYD1_k127_4513431_28 flagellar K02418 - - 0.0000000000000000000001619 104.0
BYD1_k127_4513431_29 FlgN protein K02399 - - 0.000000000000003413 82.0
BYD1_k127_4513431_3 flagellar motor switch protein K02410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008577 500.0
BYD1_k127_4513431_30 negative regulator of flagellin synthesis K02398 - - 0.0000000004555 64.0
BYD1_k127_4513431_4 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 504.0
BYD1_k127_4513431_5 flagellar motor switch protein K02416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 480.0
BYD1_k127_4513431_6 Flagellar basal body rod FlgEFG protein C-terminal K02390 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 428.0
BYD1_k127_4513431_7 Belongs to the flagella basal body rod proteins family K02392 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009082 406.0
BYD1_k127_4513431_8 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 349.0
BYD1_k127_4513431_9 Belongs to the bacterial flagellin family K02397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 340.0
BYD1_k127_4555046_0 PFAM IstB domain protein ATP-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 365.0
BYD1_k127_4555046_1 PFAM Integrase catalytic region - - - 0.000000000000000000000000000000000000000000000000000000005604 210.0
BYD1_k127_4555046_3 Family of unknown function (DUF5372) - - - 0.0000001054 55.0
BYD1_k127_4653178_0 PFAM Hemolysin-type calcium-binding - - - 0.0 1045.0
BYD1_k127_4653178_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 528.0
BYD1_k127_4653178_2 ABC transporter transmembrane region K06148,K12536 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 446.0
BYD1_k127_4653178_3 type I secretion membrane fusion K02022,K12537 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006141 289.0
BYD1_k127_4653178_4 Bacterial regulatory proteins, crp family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001198 249.0
BYD1_k127_4653178_5 Smr protein MutS2 - - - 0.00000000000000000000000000000000000000000000000000000000002489 210.0
BYD1_k127_4653178_6 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000000000000000000000000000001162 205.0
BYD1_k127_4653178_7 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.00000000000000000000000000000000000000000000000000000862 190.0
BYD1_k127_4653178_8 Smr protein MutS2 - - - 0.00000000000000000000000000000000000000000000000000001136 194.0
BYD1_k127_4671091_0 Acyl-CoA dehydrogenase N terminal K20035 - - 1.158e-267 835.0
BYD1_k127_4671091_1 Electron transfer flavoprotein alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 475.0
BYD1_k127_4671091_2 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 370.0
BYD1_k127_4671091_3 'signal transduction protein - - - 0.000000000000000000000000000000000000000000000000000000000000000007916 233.0
BYD1_k127_4671091_4 Cobalt uptake substrate-specific transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000539 217.0
BYD1_k127_4671091_5 Protein of unknown function (DUF1631) - - - 0.00000007087 64.0
BYD1_k127_4715675_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1823.0
BYD1_k127_4715675_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1075.0
BYD1_k127_4715675_10 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 467.0
BYD1_k127_4715675_11 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 GO:0003674,GO:0003824,GO:0003952,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0016884,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0033554,GO:0034355,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043094,GO:0043173,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 443.0
BYD1_k127_4715675_12 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 417.0
BYD1_k127_4715675_13 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 392.0
BYD1_k127_4715675_14 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007712 287.0
BYD1_k127_4715675_15 TIGRFAM cell division ATP-binding protein FtsE K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003638 287.0
BYD1_k127_4715675_16 Acyl carrier protein phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005558 274.0
BYD1_k127_4715675_17 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000007202 258.0
BYD1_k127_4715675_18 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07032 - - 0.000000000000000000000000000000000000000000000000000000000000000000004748 238.0
BYD1_k127_4715675_19 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000009721 255.0
BYD1_k127_4715675_2 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01895 - 6.2.1.1 5.366e-300 927.0
BYD1_k127_4715675_20 ribosomal large subunit export from nucleus - - - 0.000000000000000000000000000000000000000000000000000000000000001711 222.0
BYD1_k127_4715675_21 methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000000000008837 214.0
BYD1_k127_4715675_22 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000002734 207.0
BYD1_k127_4715675_23 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000995 138.0
BYD1_k127_4715675_24 CHASE - - - 0.00000000000000000000000001351 122.0
BYD1_k127_4715675_25 Acyl carrier protein - - - 0.0000000000000000000003764 99.0
BYD1_k127_4715675_26 MerR, DNA binding K08365 - - 0.0000000000000000000009378 100.0
BYD1_k127_4715675_3 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 1.775e-254 799.0
BYD1_k127_4715675_4 Belongs to the peptidase S16 family - - - 9.821e-252 800.0
BYD1_k127_4715675_5 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 1.48e-235 740.0
BYD1_k127_4715675_6 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007683 580.0
BYD1_k127_4715675_7 Belongs to the FBPase class 1 family K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005401 527.0
BYD1_k127_4715675_8 Peptidase M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 514.0
BYD1_k127_4715675_9 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 507.0
BYD1_k127_475036_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 8.602e-255 788.0
BYD1_k127_475036_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 8.2e-229 712.0
BYD1_k127_475036_2 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 416.0
BYD1_k127_475036_3 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000392 228.0
BYD1_k127_475036_4 - - - - 0.00000000000001136 79.0
BYD1_k127_4847046_0 COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.0 1097.0
BYD1_k127_4847046_1 ABC transporter K15738 - - 5.262e-281 875.0
BYD1_k127_4847046_10 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006684 418.0
BYD1_k127_4847046_11 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 331.0
BYD1_k127_4847046_12 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004164 258.0
BYD1_k127_4847046_13 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000000000000000000000000002007 142.0
BYD1_k127_4847046_14 TonB C terminal - - - 0.00000000000000000000000000000394 138.0
BYD1_k127_4847046_15 Major Facilitator - - - 0.00000000000004047 73.0
BYD1_k127_4847046_16 - - - - 0.00000000000005109 78.0
BYD1_k127_4847046_2 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 2.763e-259 832.0
BYD1_k127_4847046_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 1.424e-225 707.0
BYD1_k127_4847046_4 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006994 618.0
BYD1_k127_4847046_5 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006673 597.0
BYD1_k127_4847046_6 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 511.0
BYD1_k127_4847046_7 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008142 479.0
BYD1_k127_4847046_8 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 423.0
BYD1_k127_4847046_9 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005178 418.0
BYD1_k127_4889606_0 Oligopeptidase K01414 - 3.4.24.70 0.0 1034.0
BYD1_k127_4889606_1 Belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 8.523e-246 766.0
BYD1_k127_4889606_10 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 402.0
BYD1_k127_4889606_11 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009509 376.0
BYD1_k127_4889606_12 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 319.0
BYD1_k127_4889606_13 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 314.0
BYD1_k127_4889606_14 UbiH UbiF VisC COQ6 family K03185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 317.0
BYD1_k127_4889606_15 Phosphate-starvation-inducible E - - - 0.000000000000000000000000000000000000005061 149.0
BYD1_k127_4889606_16 Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second- messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a - - - 0.00000000000000000000000001474 113.0
BYD1_k127_4889606_17 Protein of unknown function (DUF2892) - - - 0.0000000000000000000000001952 106.0
BYD1_k127_4889606_2 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 5.253e-244 775.0
BYD1_k127_4889606_3 CATALYZES THE OXIDATIVE DECARBOXYLATION OF GLUTARYL-COA TO CROTONYL-COA AND CO(2) IN THE DEGRADATIVE PATHWAY OF L-LYSINE L-HYDROXYLYSINE AND L-TRYPTOPHAN METABOLISM. IT USES ELECTRON TRANSFER FLAVOPROTEIN AS ITS ELECTRON ACCEPTOR. Entry name K00252 - 1.3.8.6 2.598e-220 690.0
BYD1_k127_4889606_4 aminopeptidase K01262 - 3.4.11.9 3.84e-199 631.0
BYD1_k127_4889606_5 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005367 524.0
BYD1_k127_4889606_6 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 493.0
BYD1_k127_4889606_7 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005544 478.0
BYD1_k127_4889606_8 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 461.0
BYD1_k127_4889606_9 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 413.0
BYD1_k127_4941870_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1389.0
BYD1_k127_4941870_1 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004021 282.0
BYD1_k127_4941870_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007717 258.0
BYD1_k127_4941870_3 RNA-binding protein containing KH domain possibly ribosomal protein - - - 0.000000000000000000000000000000000000105 145.0
BYD1_k127_4986834_0 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 546.0
BYD1_k127_4986834_1 PFAM Cyclic nucleotide-binding - - - 0.000000000000000000000000000000000000000001584 164.0
BYD1_k127_4986834_2 Sel1-like repeats. - - - 0.000000003151 61.0
BYD1_k127_5123634_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1055.0
BYD1_k127_5123634_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 5.849e-287 898.0
BYD1_k127_5123634_2 Exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 5.632e-219 690.0
BYD1_k127_5123634_3 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 380.0
BYD1_k127_5123634_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000002866 228.0
BYD1_k127_5123634_5 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.000000000000000000000000000000000000000000000000008602 181.0
BYD1_k127_5123634_6 Electron transfer flavoprotein K03521 - - 0.0000006868 51.0
BYD1_k127_51467_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1333.0
BYD1_k127_51467_1 B12 binding domain - - - 7.76e-301 930.0
BYD1_k127_51467_10 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 517.0
BYD1_k127_51467_11 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 492.0
BYD1_k127_51467_12 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 488.0
BYD1_k127_51467_13 AMP-binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009692 492.0
BYD1_k127_51467_14 PFAM Carbohydrate-selective porin OprB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 483.0
BYD1_k127_51467_15 Acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009298 435.0
BYD1_k127_51467_16 Protein of unknown function (DUF1615) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 448.0
BYD1_k127_51467_17 depolymerase K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006366 414.0
BYD1_k127_51467_18 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 393.0
BYD1_k127_51467_19 Glycosyltransferase like family 2 K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 403.0
BYD1_k127_51467_2 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 2.178e-286 885.0
BYD1_k127_51467_20 MltA-interacting protein MipA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 374.0
BYD1_k127_51467_21 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 346.0
BYD1_k127_51467_22 ubiE/COQ5 methyltransferase family K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009041 355.0
BYD1_k127_51467_23 NAD dependent epimerase/dehydratase family K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 340.0
BYD1_k127_51467_24 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 338.0
BYD1_k127_51467_25 pteridine-dependent deoxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003406 344.0
BYD1_k127_51467_26 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 334.0
BYD1_k127_51467_27 Beta-ketoacyl synthase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 325.0
BYD1_k127_51467_28 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 324.0
BYD1_k127_51467_29 Fe2+ transport protein K07230 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006046 299.0
BYD1_k127_51467_3 Beta-lactamase - - - 1.035e-238 758.0
BYD1_k127_51467_30 Belongs to the Dps family K04047 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000218 280.0
BYD1_k127_51467_31 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000806 251.0
BYD1_k127_51467_32 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005631 245.0
BYD1_k127_51467_33 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000346 243.0
BYD1_k127_51467_34 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000000000000003572 213.0
BYD1_k127_51467_35 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000008184 194.0
BYD1_k127_51467_36 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000004008 185.0
BYD1_k127_51467_37 dehydratase - - - 0.000000000000000000000000000000000000000000000000007344 191.0
BYD1_k127_51467_38 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000000000008504 179.0
BYD1_k127_51467_39 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000000000000000000007307 164.0
BYD1_k127_51467_4 MMPL family - - - 3.209e-235 751.0
BYD1_k127_51467_40 HPP family K07168 - - 0.000000000000000000000000000000000000000005346 164.0
BYD1_k127_51467_41 membrane - - - 0.00000000000000000000000000000003097 131.0
BYD1_k127_51467_42 Phosphopantetheine attachment site K02078 - - 0.0000000000000000000000000000236 119.0
BYD1_k127_51467_43 - - - - 0.000000000000000000000000001587 117.0
BYD1_k127_51467_44 Cupredoxin-like domain - - - 0.00000000000000000000000001264 114.0
BYD1_k127_51467_45 Phosphopantetheine attachment site K02078 - - 0.00000000000000000004347 92.0
BYD1_k127_51467_46 AMP-binding enzyme - - - 0.0000000000000001797 92.0
BYD1_k127_51467_47 Double zinc ribbon - - - 0.0000003298 60.0
BYD1_k127_51467_5 Tryptophan halogenase - - - 1.522e-225 704.0
BYD1_k127_51467_6 ABC-type Fe3 transport system, permease component K02011 - - 6.886e-223 702.0
BYD1_k127_51467_7 Sodium/hydrogen exchanger family - - - 4.588e-219 683.0
BYD1_k127_51467_8 Beta-ketoacyl synthase, N-terminal domain K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 571.0
BYD1_k127_51467_9 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458,K14660,K14667 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 559.0
BYD1_k127_5167309_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 0.0 1116.0
BYD1_k127_5167309_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 501.0
BYD1_k127_5167309_10 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000009 182.0
BYD1_k127_5167309_11 Soluble lytic murein transglycosylase-like protein - - - 0.00000000000000000000000000000000000000000007899 169.0
BYD1_k127_5167309_12 Histidine kinase K07675 - 2.7.13.3 0.00000000000000000009035 104.0
BYD1_k127_5167309_2 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 399.0
BYD1_k127_5167309_3 PFAM type II secretion system K02455,K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 364.0
BYD1_k127_5167309_4 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000497 297.0
BYD1_k127_5167309_5 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002449 298.0
BYD1_k127_5167309_6 FKBP-type peptidyl-prolyl cis-trans K03772,K03773 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000002655 230.0
BYD1_k127_5167309_7 SCO1/SenC K07152 - - 0.000000000000000000000000000000000000000000000000000000000001819 216.0
BYD1_k127_5167309_8 Type II secretion system (T2SS), protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000007664 199.0
BYD1_k127_5167309_9 NLP P60 protein - - - 0.0000000000000000000000000000000000000000000000000009227 188.0
BYD1_k127_5267086_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1737.0
BYD1_k127_5267086_1 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0 1611.0
BYD1_k127_5267086_10 Diguanylate cyclase - - - 4.227e-222 727.0
BYD1_k127_5267086_11 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 9.504e-211 663.0
BYD1_k127_5267086_12 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006893 556.0
BYD1_k127_5267086_13 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 544.0
BYD1_k127_5267086_14 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 499.0
BYD1_k127_5267086_15 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009654 506.0
BYD1_k127_5267086_16 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007429 471.0
BYD1_k127_5267086_17 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 445.0
BYD1_k127_5267086_18 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 432.0
BYD1_k127_5267086_19 pfkB family carbohydrate kinase K03272,K21344 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 434.0
BYD1_k127_5267086_2 His Kinase A (phospho-acceptor) domain - - - 0.0 1229.0
BYD1_k127_5267086_20 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026 399.0
BYD1_k127_5267086_21 Solute carrier family 35 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006564 365.0
BYD1_k127_5267086_22 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 353.0
BYD1_k127_5267086_23 Belongs to the MtfA family K09933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 325.0
BYD1_k127_5267086_24 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009336 324.0
BYD1_k127_5267086_25 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006389 314.0
BYD1_k127_5267086_26 ferredoxin--nadp reductase K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 304.0
BYD1_k127_5267086_27 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000955 307.0
BYD1_k127_5267086_28 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 289.0
BYD1_k127_5267086_29 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005213 281.0
BYD1_k127_5267086_3 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1222.0
BYD1_k127_5267086_30 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003918 273.0
BYD1_k127_5267086_31 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004169 267.0
BYD1_k127_5267086_32 - - - - 0.00000000000000000000000000000000000000000000000000000000000000003394 227.0
BYD1_k127_5267086_33 UPF0114 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000005798 226.0
BYD1_k127_5267086_34 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000006579 208.0
BYD1_k127_5267086_35 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000001143 206.0
BYD1_k127_5267086_36 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000003093 202.0
BYD1_k127_5267086_37 - - - - 0.00000000000000000000000000000000000000000000000000396 186.0
BYD1_k127_5267086_38 HNH nucleases - - - 0.0000000000000000000000000000000000000000000000003161 184.0
BYD1_k127_5267086_39 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000000009283 172.0
BYD1_k127_5267086_4 PD-(D/E)XK nuclease superfamily - - - 0.0 1035.0
BYD1_k127_5267086_40 - - - - 0.00000000000000000000000000000000004731 143.0
BYD1_k127_5267086_42 DsrC like protein K11179 - - 0.000000000000000000000000001787 117.0
BYD1_k127_5267086_43 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain - - - 0.00000000000000000000002078 111.0
BYD1_k127_5267086_44 BolA-like protein K05527 - - 0.0000000000000000009624 96.0
BYD1_k127_5267086_45 - - - - 0.0000000000000001436 82.0
BYD1_k127_5267086_46 Protein of unknown function (DUF2846) - - - 0.00000000000001378 84.0
BYD1_k127_5267086_47 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000002413 61.0
BYD1_k127_5267086_48 - - - - 0.0001663 49.0
BYD1_k127_5267086_5 DNA polymerase III K02342 - 2.7.7.7 4.22e-321 998.0
BYD1_k127_5267086_6 Diguanylate cyclase - - - 2.789e-294 921.0
BYD1_k127_5267086_7 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 1.077e-288 891.0
BYD1_k127_5267086_8 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 6.357e-239 743.0
BYD1_k127_5267086_9 RecB family exonuclease K01144 - 3.1.11.5 1.701e-223 721.0
BYD1_k127_5269997_0 Cytochrome c K02198 - - 1.07e-229 736.0
BYD1_k127_5269997_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0006807,GO:0008150,GO:0008152,GO:0016491,GO:0016661,GO:0016662,GO:0020037,GO:0042279,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046906,GO:0048037,GO:0055114,GO:0097159,GO:0097164,GO:0098809,GO:1901363 1.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 501.0
BYD1_k127_5269997_2 COG4235 Cytochrome c biogenesis factor K02200 - - 0.00000000000000007727 90.0
BYD1_k127_5297191_0 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0 1040.0
BYD1_k127_5297191_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 323.0
BYD1_k127_5297191_2 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000004278 206.0
BYD1_k127_5297191_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000268 103.0
BYD1_k127_5297191_4 - - - - 0.00000000004012 66.0
BYD1_k127_5312726_0 cofactor biosynthesis protein NifB K02585 - - 9.098e-245 765.0
BYD1_k127_5312726_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 3.479e-227 710.0
BYD1_k127_5312726_2 hydratase decarboxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 296.0
BYD1_k127_5312726_3 transcriptional K03719 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001227 263.0
BYD1_k127_5312726_4 Belongs to the ArsC family - - - 0.00000000000000000000000000000000000000000004474 166.0
BYD1_k127_5312726_5 4Fe-4S ferredoxin iron-sulfur binding domain - - - 0.000000000000000000000000000000000000000002809 162.0
BYD1_k127_5312726_6 PFAM flavodoxin K22405 - 1.6.3.4 0.000000000000000000000832 98.0
BYD1_k127_5453337_0 Major Facilitator Superfamily - - - 1.439e-308 953.0
BYD1_k127_5453337_1 Domain of unknown function (DUF4445) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004216 577.0
BYD1_k127_5453337_10 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000005293 248.0
BYD1_k127_5453337_11 - - - - 0.00000000000000000000000000000000000000000000000000003139 195.0
BYD1_k127_5453337_12 FHA domain - - - 0.0000000000000000000000000000000000000000000000001393 187.0
BYD1_k127_5453337_13 Regulatory protein MarR - - - 0.0000000000000000000000000000000000000004897 154.0
BYD1_k127_5453337_14 PFAM Rieske 2Fe-2S domain protein K18068 - 1.14.12.7 0.000000000000000000000000000000000729 146.0
BYD1_k127_5453337_15 methionine synthase K00548 - 2.1.1.13 0.00000000000000000000007926 115.0
BYD1_k127_5453337_2 PFAM Uroporphyrinogen decarboxylase (URO-D) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007386 572.0
BYD1_k127_5453337_3 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 499.0
BYD1_k127_5453337_4 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005336 503.0
BYD1_k127_5453337_5 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 448.0
BYD1_k127_5453337_6 PFAM amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 376.0
BYD1_k127_5453337_7 Pterin binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 351.0
BYD1_k127_5453337_8 Methionine synthase B12-binding module cap domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019 302.0
BYD1_k127_5453337_9 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 308.0
BYD1_k127_5638768_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.0 1425.0
BYD1_k127_5638768_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - 0.0 1122.0
BYD1_k127_5638768_10 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 3.387e-205 645.0
BYD1_k127_5638768_11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K00648 - 2.3.1.180 6.264e-198 623.0
BYD1_k127_5638768_12 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 570.0
BYD1_k127_5638768_13 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 562.0
BYD1_k127_5638768_14 Domain of unknown function (DUF4872) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 535.0
BYD1_k127_5638768_15 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 526.0
BYD1_k127_5638768_16 type II secretion system protein K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007077 529.0
BYD1_k127_5638768_17 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000947 524.0
BYD1_k127_5638768_18 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 514.0
BYD1_k127_5638768_19 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 506.0
BYD1_k127_5638768_2 Transport of potassium into the cell K03549 - - 3.74e-308 977.0
BYD1_k127_5638768_20 Belongs to the peptidase S1C family K04691,K04772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 505.0
BYD1_k127_5638768_21 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 446.0
BYD1_k127_5638768_22 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 441.0
BYD1_k127_5638768_23 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005279 434.0
BYD1_k127_5638768_24 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 415.0
BYD1_k127_5638768_25 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009399 417.0
BYD1_k127_5638768_26 abc transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 401.0
BYD1_k127_5638768_27 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007098 411.0
BYD1_k127_5638768_28 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 405.0
BYD1_k127_5638768_29 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005125 407.0
BYD1_k127_5638768_3 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 7.419e-299 927.0
BYD1_k127_5638768_30 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 372.0
BYD1_k127_5638768_31 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 359.0
BYD1_k127_5638768_32 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 359.0
BYD1_k127_5638768_33 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 347.0
BYD1_k127_5638768_34 SecretomeP prediction - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 345.0
BYD1_k127_5638768_35 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 327.0
BYD1_k127_5638768_36 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952 340.0
BYD1_k127_5638768_37 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 337.0
BYD1_k127_5638768_38 FMN binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 323.0
BYD1_k127_5638768_39 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 311.0
BYD1_k127_5638768_4 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 7.34e-230 717.0
BYD1_k127_5638768_40 VacJ family lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 292.0
BYD1_k127_5638768_41 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 291.0
BYD1_k127_5638768_42 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006904 299.0
BYD1_k127_5638768_43 Molybdopterin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006147 287.0
BYD1_k127_5638768_44 (FHA) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002316 271.0
BYD1_k127_5638768_45 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001051 265.0
BYD1_k127_5638768_46 Phasin protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008989 244.0
BYD1_k127_5638768_47 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000001532 236.0
BYD1_k127_5638768_48 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.0000000000000000000000000000000000000000000000000000000000000000001769 247.0
BYD1_k127_5638768_49 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.000000000000000000000000000000000000000000000000000000000000000001404 235.0
BYD1_k127_5638768_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 1.246e-229 715.0
BYD1_k127_5638768_50 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000003085 231.0
BYD1_k127_5638768_51 - - - - 0.000000000000000000000000000000000000000000000000000000000000001576 228.0
BYD1_k127_5638768_52 ORF6N domain - - - 0.00000000000000000000000000000000000000000000000000000000000008544 226.0
BYD1_k127_5638768_53 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000002713 230.0
BYD1_k127_5638768_54 general secretion pathway protein - - - 0.00000000000000000000000000000000000000000000000000000000001245 216.0
BYD1_k127_5638768_55 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000000000000000000000009651 202.0
BYD1_k127_5638768_56 - - - - 0.0000000000000000000000000000000000000000000000000000005538 198.0
BYD1_k127_5638768_57 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000000000000000000000000004608 196.0
BYD1_k127_5638768_58 - - - - 0.000000000000000000000000000000000000000000000001928 200.0
BYD1_k127_5638768_59 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000000006396 194.0
BYD1_k127_5638768_6 Sodium/hydrogen exchanger family K03455 - - 2.846e-227 721.0
BYD1_k127_5638768_60 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000000000000006303 177.0
BYD1_k127_5638768_61 phenylacetic acid degradation protein K02614 - - 0.00000000000000000000000000000000000000000003951 166.0
BYD1_k127_5638768_62 phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.0000000000000000000000000000000000000000000399 169.0
BYD1_k127_5638768_63 Etoposide-induced protein 2.4 (EI24) - - - 0.0000000000000000000000000000000000000000001876 168.0
BYD1_k127_5638768_64 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000000000000003646 135.0
BYD1_k127_5638768_65 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000001083 142.0
BYD1_k127_5638768_66 Phosphopantetheine attachment site K02078 - - 0.000000000000000000000000000000001143 136.0
BYD1_k127_5638768_67 - - - - 0.000000000000000000000000000000017 137.0
BYD1_k127_5638768_68 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000000000002243 126.0
BYD1_k127_5638768_69 diguanylate cyclase activity - - - 0.00000000000000000000000000003433 124.0
BYD1_k127_5638768_7 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 6.276e-218 681.0
BYD1_k127_5638768_70 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00000000000000000000000000521 111.0
BYD1_k127_5638768_71 - - - - 0.00000000000000000000002447 106.0
BYD1_k127_5638768_72 - - - - 0.0000000000000000000537 93.0
BYD1_k127_5638768_73 STAS domain K07122 - - 0.0000000000000000173 87.0
BYD1_k127_5638768_74 domain protein - - - 0.00000000000002595 88.0
BYD1_k127_5638768_8 Type II and III secretion system protein K02453 - - 1.782e-214 683.0
BYD1_k127_5638768_9 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 4.51e-206 650.0
BYD1_k127_5641206_0 AcrB/AcrD/AcrF family - - - 0.0 1580.0
BYD1_k127_5641206_1 COG0643 Chemotaxis protein histidine kinase and related kinases K02487,K06596 - - 0.0 1355.0
BYD1_k127_5641206_10 cheY-homologous receiver domain K02657 - - 0.000000000000000000000000000000000000000000000000000000000000003498 220.0
BYD1_k127_5641206_11 Chemotaxis signal transduction protein K02659 - - 0.00000000000000000000000000000000000000000000000000000000002008 210.0
BYD1_k127_5641206_12 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000002049 195.0
BYD1_k127_5641206_13 response regulator receiver K02658 - - 0.00000000000000000000000000000000000000000000000000001011 190.0
BYD1_k127_5641206_14 integral membrane protein K02221 - - 0.00000000000000000000000000000000000000000000005077 180.0
BYD1_k127_5641206_15 ParE toxin of type II toxin-antitoxin system, parDE K19092 - - 0.0000000000000000000000000000000000000000000003762 169.0
BYD1_k127_5641206_16 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000000000000000001659 169.0
BYD1_k127_5641206_17 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000000000000000000000000000000006568 166.0
BYD1_k127_5641206_18 DUF167 K09131 - - 0.0000000000000000000009501 108.0
BYD1_k127_5641206_19 twitching motility protein K02670 - - 0.0000000000000005045 78.0
BYD1_k127_5641206_2 Methyl-accepting chemotaxis protein K02660 - - 2.673e-204 657.0
BYD1_k127_5641206_3 twitching motility protein K02669 - - 8.345e-200 629.0
BYD1_k127_5641206_4 COG0044 Dihydroorotase and related cyclic amidohydrolases K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 571.0
BYD1_k127_5641206_5 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007285 540.0
BYD1_k127_5641206_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 368.0
BYD1_k127_5641206_7 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 335.0
BYD1_k127_5641206_8 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 313.0
BYD1_k127_5641206_9 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008773 276.0
BYD1_k127_5646422_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1102.0
BYD1_k127_5646422_1 Polysaccharide biosynthesis protein CapD - - - 0.0 1060.0
BYD1_k127_5646422_10 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 456.0
BYD1_k127_5646422_11 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000333 429.0
BYD1_k127_5646422_12 Long-chain fatty acid transport protein K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 426.0
BYD1_k127_5646422_13 His Kinase A (phosphoacceptor) domain K07645 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 426.0
BYD1_k127_5646422_14 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 395.0
BYD1_k127_5646422_15 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 386.0
BYD1_k127_5646422_16 Belongs to the TrpC family K01609 - 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 370.0
BYD1_k127_5646422_17 anthranilate K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 344.0
BYD1_k127_5646422_18 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 334.0
BYD1_k127_5646422_19 Transcriptional regulatory protein, C terminal K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 337.0
BYD1_k127_5646422_2 Protein of unknown function - - - 0.0 1059.0
BYD1_k127_5646422_20 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 325.0
BYD1_k127_5646422_21 Bacterial sugar transferase K13012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006901 291.0
BYD1_k127_5646422_22 sensor diguanylate cyclase phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003983 299.0
BYD1_k127_5646422_23 ubiE/COQ5 methyltransferase family K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000000000000000000000000000003669 261.0
BYD1_k127_5646422_24 COG3203 Outer membrane protein (porin) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005282 260.0
BYD1_k127_5646422_25 Cobalamin adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000001712 248.0
BYD1_k127_5646422_26 transferase activity, transferring glycosyl groups K21011,K21012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001643 252.0
BYD1_k127_5646422_27 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000007284 239.0
BYD1_k127_5646422_29 Glycosyltransferase like family 2 K20444 - - 0.00000000000000000000000000000000000000000000000000000000000003296 224.0
BYD1_k127_5646422_3 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 3.956e-241 752.0
BYD1_k127_5646422_30 rRNA (adenine-N6,N6-)-dimethyltransferase activity K02528,K15256 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000002057 218.0
BYD1_k127_5646422_31 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000000000000000000000000000000006926 198.0
BYD1_k127_5646422_32 Dihaem cytochrome c - - - 0.000000000000000000000000000000000000000000000002097 179.0
BYD1_k127_5646422_33 Domain of unknown function (DUF1924) - - - 0.000000000000000000000000000000000000000000001519 169.0
BYD1_k127_5646422_34 Transcriptional regulator - - - 0.000000000000000000000000000000000000000001011 159.0
BYD1_k127_5646422_35 - - - - 0.000000000000000000000000002071 114.0
BYD1_k127_5646422_36 - - - - 0.0000000000000000001185 93.0
BYD1_k127_5646422_37 Universal stress protein A-like protein - GO:0000166,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008144,GO:0016020,GO:0016208,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044464,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0002006 48.0
BYD1_k127_5646422_4 modulator of DNA gyrase K03568 - - 1.985e-239 747.0
BYD1_k127_5646422_5 sulfatase - - - 2.491e-234 741.0
BYD1_k127_5646422_6 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 575.0
BYD1_k127_5646422_7 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 565.0
BYD1_k127_5646422_8 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 550.0
BYD1_k127_5646422_9 alpha/beta hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 462.0
BYD1_k127_5694240_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 6.024e-309 957.0
BYD1_k127_5694240_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 503.0
BYD1_k127_5694240_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 376.0
BYD1_k127_5712360_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 4.606e-234 742.0
BYD1_k127_5712360_1 glutamate--cysteine ligase K01919 - 6.3.2.2 7.581e-217 682.0
BYD1_k127_5712360_10 - - - - 0.00000000000000000000000000000001295 130.0
BYD1_k127_5712360_11 - - - - 0.00000000000000000000008364 101.0
BYD1_k127_5712360_12 Bacterial periplasmic substrate-binding proteins K10001 - - 0.0000000000000000007235 93.0
BYD1_k127_5712360_13 COG0827 Adenine-specific DNA methylase K07317 - 2.1.1.72 0.0000000000007459 69.0
BYD1_k127_5712360_2 Asparaginase K01424,K05597 - 3.5.1.1,3.5.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000439 543.0
BYD1_k127_5712360_3 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003786 407.0
BYD1_k127_5712360_4 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789 383.0
BYD1_k127_5712360_5 Protein of unknown function (DUF3050) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 292.0
BYD1_k127_5712360_6 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000001701 192.0
BYD1_k127_5712360_7 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.000000000000000000000000000000000000000000000000001415 194.0
BYD1_k127_5712360_8 Phosphotransferase System K11189 - - 0.0000000000000000000000000000000000001184 142.0
BYD1_k127_5712360_9 - - - - 0.0000000000000000000000000000000001233 138.0
BYD1_k127_5791613_0 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 289.0
BYD1_k127_5791613_1 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000000000002255 231.0
BYD1_k127_5791613_2 Berberine and berberine like - - - 0.0000000000000000000000000000000000000000000000000000000000002756 219.0
BYD1_k127_5832467_0 ribonuclease, Rne Rng family K08301 - - 1.447e-220 705.0
BYD1_k127_5832467_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 8.909e-218 687.0
BYD1_k127_5832467_10 NLP P60 protein - - - 0.0000000000000000000000000002296 115.0
BYD1_k127_5832467_2 dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 400.0
BYD1_k127_5832467_3 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 370.0
BYD1_k127_5832467_4 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000184 258.0
BYD1_k127_5832467_5 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000000000000001515 242.0
BYD1_k127_5832467_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000000000000000000000000000004573 222.0
BYD1_k127_5832467_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000000000000007384 177.0
BYD1_k127_5832467_8 - - - - 0.00000000000000000000000000000000000000006257 161.0
BYD1_k127_5832467_9 Protein of unknown function (DUF2782) - - - 0.000000000000000000000000000000000004056 139.0
BYD1_k127_5889831_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 4.454e-235 731.0
BYD1_k127_5889831_1 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 582.0
BYD1_k127_5889831_2 formate dehydrogenase, beta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007167 531.0
BYD1_k127_5915220_0 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 1.133e-311 966.0
BYD1_k127_5915220_1 AcyL-CoA dehydrogenase K06445 - - 2.913e-199 638.0
BYD1_k127_5915220_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003475 383.0
BYD1_k127_5915220_3 RNA polymerase sigma K03087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005594 374.0
BYD1_k127_5915220_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 294.0
BYD1_k127_5915220_5 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 302.0
BYD1_k127_5915220_6 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005566 281.0
BYD1_k127_5915220_7 COG0739 Membrane proteins related to metalloendopeptidases K06194 - - 0.00000000000000000000000000000000000000000000000000000000003327 216.0
BYD1_k127_5919470_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 1.019e-240 764.0
BYD1_k127_5919470_1 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 587.0
BYD1_k127_5919470_10 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000001988 103.0
BYD1_k127_5919470_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 576.0
BYD1_k127_5919470_3 Glutamine amidotransferase class-I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 314.0
BYD1_k127_5919470_4 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 317.0
BYD1_k127_5919470_5 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008956 242.0
BYD1_k127_5919470_6 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000001047 222.0
BYD1_k127_5919470_7 gag-polyprotein putative aspartyl protease K06985 - - 0.00000000000000000000000000000000000000000000000000000000000003181 221.0
BYD1_k127_5919470_8 Protein of unknown function (DUF1255) K09913 - 2.4.2.1,2.4.2.2 0.0000000000000000000000000000000000000000000000000118 181.0
BYD1_k127_5919470_9 Protein of unknown function (DUF2788) - - - 0.0000000000000000000000001178 108.0
BYD1_k127_5934525_0 Cation transporter/ATPase, N-terminus K01539 - 3.6.3.9 0.0 1244.0
BYD1_k127_5934525_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 2.536e-284 878.0
BYD1_k127_5934525_10 5,10-methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 430.0
BYD1_k127_5934525_11 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004659 419.0
BYD1_k127_5934525_12 Chemoreceptor zinc-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 412.0
BYD1_k127_5934525_13 TonB-dependent Receptor Plug K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009108 417.0
BYD1_k127_5934525_14 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 404.0
BYD1_k127_5934525_15 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002851 380.0
BYD1_k127_5934525_16 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 366.0
BYD1_k127_5934525_17 MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005056 351.0
BYD1_k127_5934525_18 RNA-binding S4 domain-containing protein K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 319.0
BYD1_k127_5934525_19 Cyclic nucleotide-monophosphate binding domain K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 297.0
BYD1_k127_5934525_2 AAA domain K07133 - - 2.573e-201 637.0
BYD1_k127_5934525_20 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009315 292.0
BYD1_k127_5934525_21 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003793 276.0
BYD1_k127_5934525_22 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002588 272.0
BYD1_k127_5934525_23 Cache domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003617 257.0
BYD1_k127_5934525_24 Putative DNA-binding domain K09929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000203 245.0
BYD1_k127_5934525_25 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007144 241.0
BYD1_k127_5934525_26 Periplasmic sensor domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001447 250.0
BYD1_k127_5934525_27 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000001215 234.0
BYD1_k127_5934525_28 Protein of unknown function (DUF1109) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001729 244.0
BYD1_k127_5934525_29 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000000005606 233.0
BYD1_k127_5934525_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 597.0
BYD1_k127_5934525_30 Psort location CytoplasmicMembrane, score 9.46 K15977 - - 0.000000000000000000000000000000000000000000000000000000000000000009689 240.0
BYD1_k127_5934525_31 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000001106 194.0
BYD1_k127_5934525_32 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000001283 209.0
BYD1_k127_5934525_33 Glutaredoxin - - - 0.00000000000000000000000000000000000000000000000000008927 191.0
BYD1_k127_5934525_34 COG0840 Methyl-accepting chemotaxis protein K08738 - - 0.0000000000000000000000000000000000000000000000001478 180.0
BYD1_k127_5934525_35 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000000000000004288 180.0
BYD1_k127_5934525_36 TonB C terminal K03646 - - 0.000000000000000000000000000000000000000000002628 183.0
BYD1_k127_5934525_37 Biopolymer transport protein ExbD/TolR K03560 - - 0.0000000000000000000000000000000000000000001497 163.0
BYD1_k127_5934525_38 thioesterase K07107 - - 0.0000000000000000000000000000000000008169 150.0
BYD1_k127_5934525_39 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000000000000000000003009 139.0
BYD1_k127_5934525_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007735 573.0
BYD1_k127_5934525_40 Domain of unknown function (DUF4154) - - - 0.0000000000000000000000008242 111.0
BYD1_k127_5934525_41 - - - - 0.00000000000000000000001465 104.0
BYD1_k127_5934525_42 - - - - 0.000000000000003364 81.0
BYD1_k127_5934525_43 - - - - 0.000000002101 68.0
BYD1_k127_5934525_5 amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 566.0
BYD1_k127_5934525_6 Bacterial protein of unknown function (DUF853) K06915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 587.0
BYD1_k127_5934525_7 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 463.0
BYD1_k127_5934525_8 Protein of unknown function (DUF692) K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 467.0
BYD1_k127_5934525_9 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 428.0
BYD1_k127_5955324_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 1.721e-298 931.0
BYD1_k127_5955324_1 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 4.638e-243 763.0
BYD1_k127_5955324_10 ZIP Zinc transporter K16267 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 336.0
BYD1_k127_5955324_11 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 330.0
BYD1_k127_5955324_12 Cache domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001165 285.0
BYD1_k127_5955324_13 synthesis repressor, PhaR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001324 274.0
BYD1_k127_5955324_14 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005763 273.0
BYD1_k127_5955324_15 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000448 195.0
BYD1_k127_5955324_16 - - - - 0.0000000000000001194 86.0
BYD1_k127_5955324_17 - - - - 0.00000001711 55.0
BYD1_k127_5955324_2 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 2.085e-225 704.0
BYD1_k127_5955324_3 glycolate oxidase subunit GlcD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 608.0
BYD1_k127_5955324_4 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 - 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 440.0
BYD1_k127_5955324_5 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006064 432.0
BYD1_k127_5955324_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023 - 1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 430.0
BYD1_k127_5955324_7 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 374.0
BYD1_k127_5955324_8 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008487 380.0
BYD1_k127_5955324_9 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 356.0
BYD1_k127_5980233_0 of ABC transporters with duplicated ATPase - - - 8.456e-296 914.0
BYD1_k127_5980233_1 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002323 595.0
BYD1_k127_5980233_10 PFAM Cytochrome c, class I K08738 - - 0.000000000000000000000000031 111.0
BYD1_k127_5980233_2 Phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 535.0
BYD1_k127_5980233_3 GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005037 510.0
BYD1_k127_5980233_4 D-Ala-D-Ala carboxypeptidase K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004141 471.0
BYD1_k127_5980233_5 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008807 413.0
BYD1_k127_5980233_6 Amidohydrolase K01686 - 4.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006407 345.0
BYD1_k127_5980233_7 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 333.0
BYD1_k127_5980233_8 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 319.0
BYD1_k127_5980233_9 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003601 288.0
BYD1_k127_6067122_0 von Willebrand factor, type A - - - 0.0 1146.0
BYD1_k127_6067122_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0 1090.0
BYD1_k127_6067122_2 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005791 544.0
BYD1_k127_6067122_3 ATPase associated with various cellular activities AAA_5 K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 481.0
BYD1_k127_6067122_4 PFAM Phosphoribulokinase uridine kinase K00855 - 2.7.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 439.0
BYD1_k127_6067122_6 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.000000000000001298 76.0
BYD1_k127_6067122_7 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000008111 53.0
BYD1_k127_6119141_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1423.0
BYD1_k127_6119141_1 Bacterial DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1402.0
BYD1_k127_6119141_10 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003704 521.0
BYD1_k127_6119141_11 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 406.0
BYD1_k127_6119141_12 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 376.0
BYD1_k127_6119141_13 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000658 368.0
BYD1_k127_6119141_14 Cobyrinic acid ac-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 301.0
BYD1_k127_6119141_15 PFAM Pyruvate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009453 250.0
BYD1_k127_6119141_16 Alpha/beta hydrolase family K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000002079 263.0
BYD1_k127_6119141_17 (GGDEF) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000007177 245.0
BYD1_k127_6119141_18 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000002669 208.0
BYD1_k127_6119141_19 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000001415 186.0
BYD1_k127_6119141_2 PFAM malic K00029 - 1.1.1.40 0.0 1122.0
BYD1_k127_6119141_20 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.000000000000000000000000000000000001431 160.0
BYD1_k127_6119141_21 - - - - 0.0000004655 57.0
BYD1_k127_6119141_22 - - - - 0.0000005956 57.0
BYD1_k127_6119141_3 DNA helicase K03657 - 3.6.4.12 0.0 1052.0
BYD1_k127_6119141_4 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates - - - 1.957e-291 904.0
BYD1_k127_6119141_5 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - - 1.606e-227 715.0
BYD1_k127_6119141_6 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191 580.0
BYD1_k127_6119141_7 Aldehyde dehydrogenase family K00128,K22445 - 1.2.1.3,1.2.99.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 567.0
BYD1_k127_6119141_8 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 590.0
BYD1_k127_6119141_9 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 531.0
BYD1_k127_613937_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0 1011.0
BYD1_k127_613937_1 Cytochrome c K02198 - - 1.669e-305 958.0
BYD1_k127_613937_10 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 327.0
BYD1_k127_613937_11 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 325.0
BYD1_k127_613937_12 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 303.0
BYD1_k127_613937_13 Cytochrome c-type biogenesis protein K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 310.0
BYD1_k127_613937_14 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008298 301.0
BYD1_k127_613937_15 a g-specific adenine glycosylase K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001601 284.0
BYD1_k127_613937_16 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001163 274.0
BYD1_k127_613937_17 oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007394 254.0
BYD1_k127_613937_18 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000000000000000004684 229.0
BYD1_k127_613937_19 subunit of a heme lyase K02200 - - 0.00000000000000000000000000000000000000000000007487 182.0
BYD1_k127_613937_2 Transcriptional regulator with HTH domain and aminotransferase domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007743 545.0
BYD1_k127_613937_20 pathogenesis - - - 0.0000000000000000000000000000000000006924 148.0
BYD1_k127_613937_21 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000005109 105.0
BYD1_k127_613937_22 Protein of unknown function (DUF3460) - - - 0.00000000000000000000003633 99.0
BYD1_k127_613937_23 COG2104 Sulfur transfer protein involved in thiamine biosynthesis K03154 - - 0.0000000000000000001176 89.0
BYD1_k127_613937_24 - - - - 0.0000000000000000002545 100.0
BYD1_k127_613937_25 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00000000000004205 77.0
BYD1_k127_613937_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 467.0
BYD1_k127_613937_4 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 449.0
BYD1_k127_613937_5 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 445.0
BYD1_k127_613937_6 serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 441.0
BYD1_k127_613937_7 COG0631 Serine threonine protein phosphatase K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006457 395.0
BYD1_k127_613937_8 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 370.0
BYD1_k127_613937_9 Stress-induced protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008849 351.0
BYD1_k127_6162078_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 6.762e-257 801.0
BYD1_k127_6162078_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000003802 141.0
BYD1_k127_6182776_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 2.861e-224 709.0
BYD1_k127_6182776_1 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 3.882e-199 629.0
BYD1_k127_6182776_10 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 299.0
BYD1_k127_6182776_11 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001932 276.0
BYD1_k127_6182776_12 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000035 259.0
BYD1_k127_6182776_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000002073 240.0
BYD1_k127_6182776_14 Belongs to the DnaA family K10763 - - 0.00000000000000000000000000000000000000000000000000000000000695 224.0
BYD1_k127_6182776_15 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000000000000000000000001452 204.0
BYD1_k127_6182776_16 protein conserved in bacteria K09922 - - 0.0000000000000000000000000000000000000000000000000000000263 202.0
BYD1_k127_6182776_17 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes - - - 0.00000000000000000000000000000000000000000001739 181.0
BYD1_k127_6182776_18 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine K00950 - 2.7.6.3 0.00000000000000000000000000000000000000000006024 178.0
BYD1_k127_6182776_19 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000005825 173.0
BYD1_k127_6182776_2 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 546.0
BYD1_k127_6182776_20 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000000000000000004127 144.0
BYD1_k127_6182776_21 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000000000000000000000000002862 146.0
BYD1_k127_6182776_22 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000006408 114.0
BYD1_k127_6182776_23 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000000000000002189 111.0
BYD1_k127_6182776_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000813 528.0
BYD1_k127_6182776_4 mechanosensitive K05802 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007358 488.0
BYD1_k127_6182776_5 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 423.0
BYD1_k127_6182776_6 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 414.0
BYD1_k127_6182776_7 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 385.0
BYD1_k127_6182776_8 Hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 369.0
BYD1_k127_6182776_9 Pfam:UPF0118 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 356.0
BYD1_k127_6227692_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 1.827e-274 853.0
BYD1_k127_6227692_1 4Fe-4S ferredoxin iron-sulfur binding domain protein K21834 - - 4.97e-234 739.0
BYD1_k127_6227692_2 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K06282 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 562.0
BYD1_k127_6227692_3 nitrate reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 326.0
BYD1_k127_6227692_4 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000013 246.0
BYD1_k127_6227692_5 COG2202 FOG PAS PAC domain K03776 - - 0.0000000000000000000000000000000000000000000000000002285 191.0
BYD1_k127_6227692_6 - - - - 0.000000000000000000000000002972 118.0
BYD1_k127_6389404_0 Nitrogenase component 1 type Oxidoreductase K02587 - - 1.905e-249 775.0
BYD1_k127_6389404_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 566.0
BYD1_k127_6389404_2 TOBE domain K02019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 355.0
BYD1_k127_6389404_3 - - - - 0.00000000000000000000000000000000000000000000000000000003683 209.0
BYD1_k127_6389404_4 'signal transduction protein - - - 0.000000000000000000000000000000001088 135.0
BYD1_k127_6389404_5 Transcriptional regulator - - - 0.0000000000000000000003414 110.0
BYD1_k127_6434095_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1038.0
BYD1_k127_6434095_1 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 1.146e-276 865.0
BYD1_k127_6434095_10 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 347.0
BYD1_k127_6434095_11 response regulator K07684 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001251 284.0
BYD1_k127_6434095_12 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000001381 255.0
BYD1_k127_6434095_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001349 244.0
BYD1_k127_6434095_14 Toxic component of a toxin-antitoxin (TA) module. An RNase K07062 - - 0.000000000000000000000000000000000000000000000000000000000000000000001113 247.0
BYD1_k127_6434095_15 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000001254 197.0
BYD1_k127_6434095_16 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00000000000000000000000000000000005596 135.0
BYD1_k127_6434095_17 - - - - 0.00000000000000000000004872 115.0
BYD1_k127_6434095_18 Iron-sulphur cluster biosynthesis K13628 - - 0.000000000000000000002281 108.0
BYD1_k127_6434095_19 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000001229 88.0
BYD1_k127_6434095_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 3.929e-254 790.0
BYD1_k127_6434095_20 - - - - 0.000001929 59.0
BYD1_k127_6434095_3 Fe-S oxidoreductase K21834 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 598.0
BYD1_k127_6434095_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 604.0
BYD1_k127_6434095_5 AAA domain K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 600.0
BYD1_k127_6434095_6 Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368 504.0
BYD1_k127_6434095_7 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 397.0
BYD1_k127_6434095_8 Histidine kinase K07673 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003515 377.0
BYD1_k127_6434095_9 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 352.0
BYD1_k127_6544715_0 pyruvate phosphate dikinase K01006,K01007 - 2.7.9.1,2.7.9.2 0.0 1556.0
BYD1_k127_6544715_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 6.559e-318 996.0
BYD1_k127_6544715_10 DNA polymerase III K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003246 287.0
BYD1_k127_6544715_11 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009212 291.0
BYD1_k127_6544715_12 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002412 272.0
BYD1_k127_6544715_13 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000000000000000000000000000000006108 253.0
BYD1_k127_6544715_14 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005141 239.0
BYD1_k127_6544715_15 Oligoketide cyclase lipid transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000002779 220.0
BYD1_k127_6544715_16 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000001269 218.0
BYD1_k127_6544715_17 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000001314 208.0
BYD1_k127_6544715_18 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000000000007713 201.0
BYD1_k127_6544715_19 pilus assembly protein PilZ K02676 - - 0.000000000000000000000000000000000000000000000003961 176.0
BYD1_k127_6544715_2 GMP synthase C terminal domain K01951 - 6.3.5.2 1.284e-307 947.0
BYD1_k127_6544715_20 Belongs to the UPF0125 (RnfH) family K09801 - - 0.0000000000000000000000000000000000007001 145.0
BYD1_k127_6544715_21 ankyrin repeat K06867 - - 0.000000000000000000000000000000001946 139.0
BYD1_k127_6544715_22 Domain of unknown function (DUF4124) - - - 0.000000000005556 79.0
BYD1_k127_6544715_3 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.409e-258 801.0
BYD1_k127_6544715_4 Catalyzes the formation of 2-oxoglutarate from isocitrate K00030 - 1.1.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 543.0
BYD1_k127_6544715_5 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 430.0
BYD1_k127_6544715_6 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 358.0
BYD1_k127_6544715_7 TIGRFAM hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 343.0
BYD1_k127_6544715_8 ErfK YbiS YcfS YnhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 323.0
BYD1_k127_6544715_9 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 283.0
BYD1_k127_6605600_0 Bacterial transglutaminase-like N-terminal - - - 9.05e-299 931.0
BYD1_k127_6605600_1 Circularly permuted ATP-grasp type 2 - - - 1.271e-249 777.0
BYD1_k127_6605600_2 PFAM 20S proteasome, A and B subunits K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000456 333.0
BYD1_k127_6605600_3 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 343.0
BYD1_k127_6605600_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 312.0
BYD1_k127_6605600_5 - - - - 0.00000000000000000000000000000000000000000000000000000006018 200.0
BYD1_k127_6642638_0 Protein of unknown function (DUF1254) - - - 1.154e-207 659.0
BYD1_k127_6642638_1 Protein of unknown function (DUF1254) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004898 436.0
BYD1_k127_6642638_3 Transposase - - - 0.000601 43.0
BYD1_k127_6644870_0 TRAP transporter 4TM 12TM fusion - - - 4.859e-250 781.0
BYD1_k127_6644870_1 TRAP transporter solute receptor, TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 441.0
BYD1_k127_6644870_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000001341 234.0
BYD1_k127_6652701_0 Cyclopropane fatty acid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 597.0
BYD1_k127_6652701_1 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000009827 228.0
BYD1_k127_6652701_2 MFS/sugar transport protein - - - 0.000000000000000000238 94.0
BYD1_k127_6652701_3 Protein of unknown function (DUF1365) K09701 - - 0.00000000000000004905 82.0
BYD1_k127_6688402_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1247.0
BYD1_k127_6688402_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 2.215e-293 916.0
BYD1_k127_6688402_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.523e-237 737.0
BYD1_k127_6688402_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007471 591.0
BYD1_k127_6688402_4 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008807 557.0
BYD1_k127_6688402_5 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005368 559.0
BYD1_k127_6688402_6 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 561.0
BYD1_k127_6688402_7 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 503.0
BYD1_k127_6688402_8 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 359.0
BYD1_k127_6688402_9 Belongs to the ompA family K03286 - - 0.0000000000007038 72.0
BYD1_k127_673800_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1034.0
BYD1_k127_673800_1 Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc K00975 - 2.7.7.27 6.44e-211 662.0
BYD1_k127_673800_2 Glycosyl hydrolase family 57 - - - 2.531e-198 629.0
BYD1_k127_673800_3 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 531.0
BYD1_k127_673800_4 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 478.0
BYD1_k127_673800_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 390.0
BYD1_k127_673800_6 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 291.0
BYD1_k127_673800_7 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000001335 256.0
BYD1_k127_673800_8 Belongs to the UPF0307 family K09889 - - 0.0000000000000000000000000000000000003364 142.0
BYD1_k127_6758134_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1306.0
BYD1_k127_6758134_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 505.0
BYD1_k127_6758134_10 transport system, periplasmic component - - - 0.000000000000000000000000000000006853 139.0
BYD1_k127_6758134_11 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000002114 52.0
BYD1_k127_6758134_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 405.0
BYD1_k127_6758134_3 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 366.0
BYD1_k127_6758134_4 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 377.0
BYD1_k127_6758134_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000004242 257.0
BYD1_k127_6758134_6 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000001734 238.0
BYD1_k127_6758134_7 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000000000000000002246 227.0
BYD1_k127_6758134_8 NfeD-like C-terminal, partner-binding K07340 - - 0.00000000000000000000000000000000000000000000000000006064 190.0
BYD1_k127_6758134_9 prohibitin homologues - - - 0.000000000000000000000000000000000000000001914 157.0
BYD1_k127_676174_0 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 7.21e-249 791.0
BYD1_k127_676174_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 7.828e-215 677.0
BYD1_k127_676174_10 Cold shock protein domain K03704 - - 0.0000000000000000000000000000000004786 132.0
BYD1_k127_676174_11 Belongs to the UPF0307 family K09889 - - 0.00000000000000000000000001963 112.0
BYD1_k127_676174_12 Transcriptional regulator - - - 0.000000000000000000000496 98.0
BYD1_k127_676174_2 modulator of DNA gyrase K03592 - - 6.413e-198 631.0
BYD1_k127_676174_3 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 596.0
BYD1_k127_676174_4 Transcriptional regulator, LysR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 406.0
BYD1_k127_676174_5 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 419.0
BYD1_k127_676174_6 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006453 265.0
BYD1_k127_676174_7 Lysine methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009092 252.0
BYD1_k127_676174_8 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002269 241.0
BYD1_k127_676174_9 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000007665 148.0
BYD1_k127_6767658_0 Large exoproteins involved in heme utilization or adhesion K15125 - - 5.243e-278 904.0
BYD1_k127_6767658_1 hemolysin activation secretion protein - - - 1.128e-208 664.0
BYD1_k127_6767658_2 His Kinase A (phosphoacceptor) domain K19661 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006197 582.0
BYD1_k127_6767658_3 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 481.0
BYD1_k127_6767658_4 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009678 448.0
BYD1_k127_6767658_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 295.0
BYD1_k127_6767658_6 RTX toxin acyltransferase K07389 - - 0.0000000000000000000000000000000000000000000000000000000000000000005575 236.0
BYD1_k127_6767658_7 Predicted metal-dependent hydrolase K07044 - - 0.000000000000000000000000000000000000000000000000000002879 199.0
BYD1_k127_6767658_9 Dihaem cytochrome c - - - 0.00000000000000000000000000009724 121.0
BYD1_k127_680895_0 PFAM Integrase catalytic K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000754 462.0
BYD1_k127_680895_1 Transcriptional regulator K07782 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 297.0
BYD1_k127_680895_2 WYL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000009238 235.0
BYD1_k127_680895_3 ribonuclease activity - - - 0.0000000000000000000000000000000000000000000000000000000000000001036 222.0
BYD1_k127_680895_4 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.000000000000000000000000000000000001418 142.0
BYD1_k127_680895_5 Transposase IS3 IS911 family protein K07483 - - 0.0000000000000000000000000000000006208 132.0
BYD1_k127_680895_6 Bacterial antitoxin of type II TA system, VapB - - - 0.000000000000000000000000001689 113.0
BYD1_k127_6849175_0 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008168 529.0
BYD1_k127_6849175_1 Hydrogenase formation hypA family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 397.0
BYD1_k127_6954146_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1372.0
BYD1_k127_6954146_1 Chemoreceptor zinc-binding domain - - - 0.0000000000000000000000000127 117.0
BYD1_k127_6954146_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000286 66.0
BYD1_k127_6977120_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 2.631e-300 942.0
BYD1_k127_6977120_1 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 459.0
BYD1_k127_6977120_2 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009593 396.0
BYD1_k127_6977120_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000066 367.0
BYD1_k127_6977120_4 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001944 283.0
BYD1_k127_6977120_5 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000001344 228.0
BYD1_k127_6977120_6 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000316 204.0
BYD1_k127_6977120_7 PFAM regulatory protein LuxR - - - 0.00000000000000000000000000000000000000000469 176.0
BYD1_k127_6977120_8 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000007613 145.0
BYD1_k127_6977120_9 - - - - 0.00000000000000000000000000000005748 138.0
BYD1_k127_7008806_0 protein related to plant photosystem II stability assembly factor - - - 5.262e-214 676.0
BYD1_k127_7008806_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000007789 171.0
BYD1_k127_7008806_2 ThiS family K03636 - - 0.0000000000000000000000000000004168 126.0
BYD1_k127_7044452_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 5.338e-293 917.0
BYD1_k127_7044452_1 Formyl transferase, C-terminal domain K19640 - - 5.185e-273 852.0
BYD1_k127_7044452_10 HupF/HypC family K04653 - - 0.000000000000000000000406 99.0
BYD1_k127_7044452_11 Rubredoxin - - - 0.00000000000000000002764 97.0
BYD1_k127_7044452_2 Belongs to the HypD family K04654 - - 2.189e-216 678.0
BYD1_k127_7044452_3 hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 552.0
BYD1_k127_7044452_4 Hydrogenase accessory protein HypB K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 407.0
BYD1_k127_7044452_5 PFAM HupH hydrogenase expression protein K03618 - - 0.00000000000000000000000000000000000000000000000000000000002802 222.0
BYD1_k127_7044452_6 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000000000000000000000000000001045 167.0
BYD1_k127_7044452_7 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.000000000000000000000000000002184 121.0
BYD1_k127_7044452_8 [NiFe]-hydrogenase assembly, chaperone, HybE - - - 0.00000000000000000000000000002289 126.0
BYD1_k127_7044452_9 Hydrogenase-1 expression protein HyaE K03619 - - 0.0000000000000000000000000004672 119.0
BYD1_k127_7103510_0 PUA-like domain K00958 - 2.7.7.4 1.019e-235 735.0
BYD1_k127_7103510_1 Peptidase M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 508.0
BYD1_k127_7103510_2 FAD binding domain K00394 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 325.0
BYD1_k127_7103510_3 Adenosine-5'-phosphosulfate reductase beta subunit K00395 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 316.0
BYD1_k127_7103510_4 C-type monoheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the intermediary formation of conspicuous sulfur globules inside of the cells - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007997 282.0
BYD1_k127_7103510_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000000000000002656 239.0
BYD1_k127_7103510_6 sulfur oxidation protein SoxY K17226 - - 0.00000000000000000000000000000000000000000006691 165.0
BYD1_k127_7103510_7 oxidation protein K17227 - - 0.000000000000000000000000000000000006675 139.0
BYD1_k127_734038_0 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 595.0
BYD1_k127_734038_1 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 556.0
BYD1_k127_734038_11 - - - - 0.0000000000000000000375 93.0
BYD1_k127_734038_2 Diguanylate cyclase K21023 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 497.0
BYD1_k127_734038_3 Bacterial extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005157 423.0
BYD1_k127_734038_4 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) K05951 - 2.4.2.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 378.0
BYD1_k127_734038_5 alginic acid biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 379.0
BYD1_k127_734038_6 SIR2-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 351.0
BYD1_k127_734038_7 Peptidase S8 K01342,K08651 - 3.4.21.62,3.4.21.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 328.0
BYD1_k127_734038_9 - - - - 0.0000000000000000000000000000000000000000001666 168.0
BYD1_k127_734263_0 Pfam:HipA_N K07154 - 2.7.11.1 1.421e-227 715.0
BYD1_k127_734263_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 593.0
BYD1_k127_734263_10 part of a sulfur-relay system K11179 - - 0.0000000000000000000000000000000000000000003724 160.0
BYD1_k127_734263_11 MEKHLA domain - - - 0.000000000000000000000000000000000000000000645 162.0
BYD1_k127_734263_12 - - - - 0.00000000000000000002267 96.0
BYD1_k127_734263_13 - - - - 0.000000000004776 73.0
BYD1_k127_734263_2 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 544.0
BYD1_k127_734263_3 COG1613 ABC-type sulfate transport system, periplasmic component K02048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 543.0
BYD1_k127_734263_4 Binding-protein-dependent transport system inner membrane component K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 429.0
BYD1_k127_734263_5 Transcriptional regulator K13635 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000404 421.0
BYD1_k127_734263_6 Sulfate ABC transporter inner membrane subunit CysT K02046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 423.0
BYD1_k127_734263_7 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.000000000000000000000000000000000000000000000000000000000000000001312 243.0
BYD1_k127_734263_8 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000001546 218.0
BYD1_k127_734263_9 transcriptional regulators - - - 0.0000000000000000000000000000000000000000000000000000000006001 203.0
BYD1_k127_7358242_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 472.0
BYD1_k127_7358242_1 Methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 436.0
BYD1_k127_7358242_2 SMART helix-turn-helix domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 337.0
BYD1_k127_7358242_3 - - - - 0.0000000000000000000000000000006502 126.0
BYD1_k127_7358242_4 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000008108 62.0
BYD1_k127_7379453_0 Fumarase C C-terminus K01744 - 4.3.1.1 4.328e-218 685.0
BYD1_k127_7379453_1 Bacterial regulatory protein, Fis family K10126 - - 1.813e-204 669.0
BYD1_k127_7379453_2 His Kinase A (phosphoacceptor) domain K10125 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 622.0
BYD1_k127_7379453_3 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007062 565.0
BYD1_k127_7379453_4 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002309 280.0
BYD1_k127_7379453_5 epimerase dehydratase K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000009789 161.0
BYD1_k127_7379453_6 ATPases associated with a variety of cellular activities K02028,K10004 - 3.6.3.21 0.00000000008011 62.0
BYD1_k127_7379952_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 4.964e-246 772.0
BYD1_k127_7379952_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 575.0
BYD1_k127_7379952_10 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000002209 105.0
BYD1_k127_7379952_11 Ribosomal protein L30 K02907 - - 0.0000000000000000000000005965 104.0
BYD1_k127_7379952_12 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000005026 72.0
BYD1_k127_7379952_13 ATPases associated with a variety of cellular activities K02028,K10004 - 3.6.3.21 0.00000000008011 62.0
BYD1_k127_7379952_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 366.0
BYD1_k127_7379952_3 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 282.0
BYD1_k127_7379952_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004465 244.0
BYD1_k127_7379952_5 binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000000000000000000000002123 220.0
BYD1_k127_7379952_6 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000000000000000000000000000000005953 218.0
BYD1_k127_7379952_7 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000000001462 210.0
BYD1_k127_7379952_8 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000000002351 175.0
BYD1_k127_7379952_9 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000000001292 145.0
BYD1_k127_7388469_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0 1110.0
BYD1_k127_7388469_1 COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 3.327e-242 756.0
BYD1_k127_7388469_10 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000000000000000000004138 208.0
BYD1_k127_7388469_11 NUDIX domain K08310 - 3.6.1.67 0.000000000000000000000000000000000000000000000000000004966 198.0
BYD1_k127_7388469_12 Putative regulatory protein - - - 0.0000000000000000000000000000000000008302 140.0
BYD1_k127_7388469_13 Ribonuclease K01167 - 3.1.27.3 0.0000000000000000000000000000000000009626 143.0
BYD1_k127_7388469_14 Barstar (barnase inhibitor) - - - 0.0000000000000000000000000000000006096 136.0
BYD1_k127_7388469_15 Cysteine-rich CWC - - - 0.000000006634 59.0
BYD1_k127_7388469_2 type II secretion system protein K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000891 608.0
BYD1_k127_7388469_3 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 541.0
BYD1_k127_7388469_4 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 502.0
BYD1_k127_7388469_5 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 412.0
BYD1_k127_7388469_6 had-superfamily hydrolase subfamily ia, variant 3 K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 302.0
BYD1_k127_7388469_7 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 284.0
BYD1_k127_7388469_8 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000939 284.0
BYD1_k127_7388469_9 Bacterial regulatory proteins, tetR family K05501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007528 252.0
BYD1_k127_7439129_0 PAC sensor-containing diguanylate cyclase phosphodiesterase - - - 0.0 1039.0
BYD1_k127_7439129_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 7.367e-268 830.0
BYD1_k127_7439129_10 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 518.0
BYD1_k127_7439129_11 COG3170 Tfp pilus assembly protein FimV K08086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007034 530.0
BYD1_k127_7439129_12 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 499.0
BYD1_k127_7439129_13 Zn-dependent protease with chaperone function K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005515 491.0
BYD1_k127_7439129_14 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 458.0
BYD1_k127_7439129_15 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 448.0
BYD1_k127_7439129_16 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 436.0
BYD1_k127_7439129_17 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005586 418.0
BYD1_k127_7439129_18 Nad-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009864 411.0
BYD1_k127_7439129_19 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006433 409.0
BYD1_k127_7439129_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.584e-244 760.0
BYD1_k127_7439129_20 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 389.0
BYD1_k127_7439129_21 chemotaxis K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 374.0
BYD1_k127_7439129_22 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 355.0
BYD1_k127_7439129_23 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008923 353.0
BYD1_k127_7439129_24 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006373 340.0
BYD1_k127_7439129_25 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009852 292.0
BYD1_k127_7439129_26 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000362 262.0
BYD1_k127_7439129_27 Domain of unknown function (DUF4166) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000457 272.0
BYD1_k127_7439129_28 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000001736 269.0
BYD1_k127_7439129_29 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000003108 256.0
BYD1_k127_7439129_3 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 1.301e-236 734.0
BYD1_k127_7439129_30 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000619 258.0
BYD1_k127_7439129_31 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002657 248.0
BYD1_k127_7439129_32 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000005889 240.0
BYD1_k127_7439129_33 Diguanylate cyclase K13069,K21021 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0052621 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000001178 245.0
BYD1_k127_7439129_34 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003638 225.0
BYD1_k127_7439129_35 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000000000000002145 205.0
BYD1_k127_7439129_36 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000002218 200.0
BYD1_k127_7439129_37 CBS domain - - - 0.0000000000000000000000000000000000000000000000000001428 189.0
BYD1_k127_7439129_38 colicin V production K03558 - - 0.000000000000000000000000000000000000000000007946 173.0
BYD1_k127_7439129_39 Sporulation related domain K03749 - - 0.00000000000000000000000000000000000000000001292 170.0
BYD1_k127_7439129_4 Belongs to the thiolase family K00626 - 2.3.1.9 2.621e-208 651.0
BYD1_k127_7439129_40 Protein of unknown function (DUF465) K09794 - - 0.000000000000000000000000000000000001563 139.0
BYD1_k127_7439129_41 Binds the 23S rRNA K02909 - - 0.000000000000000000000000000000143 124.0
BYD1_k127_7439129_42 diol metabolic process K01724 - 4.2.1.96 0.0000000000000000000000000000002156 126.0
BYD1_k127_7439129_43 Domain of unknown function (DUF4405) - - - 0.000000000000000000000000001878 118.0
BYD1_k127_7439129_45 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates - - - 0.000000000000000005285 92.0
BYD1_k127_7439129_46 - - - - 0.00000003819 63.0
BYD1_k127_7439129_5 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 5.346e-202 632.0
BYD1_k127_7439129_6 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 9.433e-199 623.0
BYD1_k127_7439129_7 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 3.834e-194 610.0
BYD1_k127_7439129_8 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 607.0
BYD1_k127_7439129_9 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 544.0
BYD1_k127_7466773_0 Phosphate transporter family K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 522.0
BYD1_k127_7466773_1 DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003103 352.0
BYD1_k127_7466773_10 phosphate transport regulator K07220 - - 0.0000000000000000000000006275 104.0
BYD1_k127_7466773_2 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006932 339.0
BYD1_k127_7466773_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 302.0
BYD1_k127_7466773_4 branched-chain amino acid permease (azaleucine resistance) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006328 299.0
BYD1_k127_7466773_5 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K14160 - - 0.000000000000000000000000000000000000000000000000000000000001092 218.0
BYD1_k127_7466773_6 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000003776 213.0
BYD1_k127_7466773_7 metal cluster binding K06940 - - 0.000000000000000000000000000000000003242 140.0
BYD1_k127_7466773_8 Branched-chain amino acid transport protein (AzlD) - - - 0.00000000000000000000000000000000003186 141.0
BYD1_k127_7466773_9 - - - - 0.0000000000000000000000000000012 125.0
BYD1_k127_7470723_0 Pilus assembly protein K12279 - - 0.0000000000000000000000000000000000000000000000000000000000002968 224.0
BYD1_k127_7470723_1 Prokaryotic N-terminal methylation motif K12285 - - 0.000000000000000000000000000000000000000000000000000000000000541 219.0
BYD1_k127_7470723_2 Type II secretion system (T2SS), protein M K12280 - - 0.000000000000000000000000000000000000000000000129 178.0
BYD1_k127_7470723_3 PFAM Fimbrial assembly family protein - - - 0.0000000000000000000000000001045 128.0
BYD1_k127_7470723_4 Secretin N-terminal domain K02453,K12282 - - 0.0000000000000000000002521 105.0
BYD1_k127_7470723_5 - K12281 - - 0.000003958 59.0
BYD1_k127_748351_0 GDP-mannose 4,6 dehydratase - - - 2.359e-210 655.0
BYD1_k127_748351_1 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 7.264e-200 629.0
BYD1_k127_748351_2 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004448 429.0
BYD1_k127_748351_3 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 388.0
BYD1_k127_748351_4 Pfam Glycosyl transferase family 2 K10012 - 2.4.2.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005457 295.0
BYD1_k127_748351_5 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000461 215.0
BYD1_k127_7544780_0 formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0 1468.0
BYD1_k127_7544780_1 Acyl-CoA dehydrogenase N terminal K20035 - - 4.158e-239 752.0
BYD1_k127_7544780_10 Extracellular liganD-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 415.0
BYD1_k127_7544780_11 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 391.0
BYD1_k127_7544780_12 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 386.0
BYD1_k127_7544780_13 NADH ubiquinone oxidoreductase NADH-binding (51 kD) subunit K00124,K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 387.0
BYD1_k127_7544780_14 LysR substrate binding domain K19338 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 371.0
BYD1_k127_7544780_15 ABC-type branched-chain amino acid transport K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 351.0
BYD1_k127_7544780_16 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 363.0
BYD1_k127_7544780_17 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 325.0
BYD1_k127_7544780_18 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 285.0
BYD1_k127_7544780_19 Aldolase/RraA K02553,K10218 - 4.1.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004803 273.0
BYD1_k127_7544780_2 Amidohydrolase K03392,K10220 - 4.1.1.45,4.2.1.83 1.874e-204 641.0
BYD1_k127_7544780_20 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000001153 266.0
BYD1_k127_7544780_21 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.000000000000000000000000000000000000000000000000004582 185.0
BYD1_k127_7544780_22 Formate dehydrogenase gamma subunit K00127 - - 0.00000000000000000000000000000000000000000002095 169.0
BYD1_k127_7544780_23 Hemerythrin HHE cation binding - - - 0.0000000000000000000000000000000000000001269 157.0
BYD1_k127_7544780_24 transcriptional regulator - - - 0.00000000000000000000004508 101.0
BYD1_k127_7544780_25 NADH-dependant formate dehydrogenase delta subunit FdsD K00126 - 1.17.1.9 0.00000000000000003769 89.0
BYD1_k127_7544780_3 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506 572.0
BYD1_k127_7544780_4 Extracellular liganD-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 544.0
BYD1_k127_7544780_5 PrpF protein K16514 - 5.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 534.0
BYD1_k127_7544780_6 metal-dependent hydrolase of the TIM-barrel fold K10221 - 3.1.1.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 524.0
BYD1_k127_7544780_7 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008413 467.0
BYD1_k127_7544780_8 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 447.0
BYD1_k127_7544780_9 Catalytic LigB subunit of aromatic ring-opening dioxygenase K04101 - 1.13.11.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 427.0
BYD1_k127_7561959_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000000000000000000000000001124 206.0
BYD1_k127_7561959_2 response regulator K02479,K07684 - - 0.0000000000000000000000000000000000000001723 161.0
BYD1_k127_7561959_3 outer membrane autotransporter K12287,K12686 - - 0.0000000000000000000000000000000000121 157.0
BYD1_k127_7561959_4 PFAM pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 - - 0.0000000000000000000000000000000003015 138.0
BYD1_k127_7561959_5 Chemoreceptor zinc-binding domain - - - 0.00000000000000000004293 96.0
BYD1_k127_7561959_6 Histidine kinase - - - 0.00000000000001036 75.0
BYD1_k127_7561959_7 Protein of unknown function (DUF3617) - - - 0.00001431 55.0
BYD1_k127_7561959_8 cell adhesion K07093 - - 0.00007568 56.0
BYD1_k127_7562251_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 3.204e-212 683.0
BYD1_k127_7562251_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 481.0
BYD1_k127_7562251_2 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 467.0
BYD1_k127_7562251_3 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 416.0
BYD1_k127_7562251_4 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 371.0
BYD1_k127_7562251_5 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 348.0
BYD1_k127_7562251_6 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 316.0
BYD1_k127_7562251_7 - - - - 0.00000000000000000000000000000000000000001013 162.0
BYD1_k127_7580247_0 AcrB/AcrD/AcrF family - - - 0.0 1300.0
BYD1_k127_7580247_1 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 0.0 1012.0
BYD1_k127_7580247_10 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 443.0
BYD1_k127_7580247_11 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 426.0
BYD1_k127_7580247_12 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 405.0
BYD1_k127_7580247_13 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 394.0
BYD1_k127_7580247_14 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 390.0
BYD1_k127_7580247_15 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 369.0
BYD1_k127_7580247_16 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 359.0
BYD1_k127_7580247_17 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009401 357.0
BYD1_k127_7580247_18 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008726 350.0
BYD1_k127_7580247_19 Enoyl-CoA hydratase/isomerase K13766,K15312 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 339.0
BYD1_k127_7580247_2 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 4.891e-291 899.0
BYD1_k127_7580247_20 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 328.0
BYD1_k127_7580247_21 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 310.0
BYD1_k127_7580247_22 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 305.0
BYD1_k127_7580247_23 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001875 288.0
BYD1_k127_7580247_24 Heptaprenyl diphosphate synthase component I K00805 - 2.5.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000003217 247.0
BYD1_k127_7580247_25 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000003201 218.0
BYD1_k127_7580247_26 Cobalamin B12-binding domain protein K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000000000000000006547 214.0
BYD1_k127_7580247_27 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000001162 211.0
BYD1_k127_7580247_28 acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000001029 220.0
BYD1_k127_7580247_29 - - - - 0.0000000000000000000000000000000000000000000000000000000001916 209.0
BYD1_k127_7580247_3 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.645e-262 814.0
BYD1_k127_7580247_30 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000000000000000001858 201.0
BYD1_k127_7580247_31 Bacterial transcriptional repressor C-terminal K09017 - - 0.0000000000000000000000000000000000000000000000000001611 192.0
BYD1_k127_7580247_32 NusG domain II - - - 0.0000000000000000000000000000000000000000000002677 178.0
BYD1_k127_7580247_33 Protein of unknown function (DUF3426) - - - 0.0000000000000000000000000000000000000000147 168.0
BYD1_k127_7580247_34 rhodanese-related sulfurtransferase - - - 0.000000000000000000000000000000000000058 145.0
BYD1_k127_7580247_35 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.0000000000000000000000000000000002342 141.0
BYD1_k127_7580247_36 2-hydroxychromene-2-carboxylate isomerase - - - 0.00000000000000000002027 91.0
BYD1_k127_7580247_4 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 4.986e-218 684.0
BYD1_k127_7580247_5 Alpha/beta hydrolase family K03928 - 3.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 537.0
BYD1_k127_7580247_6 COG0524 Sugar kinases, ribokinase family K00856 - 2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 501.0
BYD1_k127_7580247_7 epimerase dehydratase K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 492.0
BYD1_k127_7580247_8 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 474.0
BYD1_k127_7580247_9 COG1538 Outer membrane protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 454.0
BYD1_k127_7596229_0 extracellular solute-binding protein - - - 8.165e-256 797.0
BYD1_k127_7596229_1 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008142 591.0
BYD1_k127_7596229_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 467.0
BYD1_k127_7596229_3 C-terminal, D2-small domain, of ClpB protein K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009068 454.0
BYD1_k127_7596229_4 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008091 381.0
BYD1_k127_7596229_5 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 375.0
BYD1_k127_7596229_6 Domain of unknown function (DUF3391) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 362.0
BYD1_k127_7596229_7 Diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000957 283.0
BYD1_k127_7596229_8 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.000000000000000000000006286 102.0
BYD1_k127_7733761_0 DNA topoisomerase III K03169 - 5.99.1.2 0.0 1184.0
BYD1_k127_7733761_1 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 4.319e-231 743.0
BYD1_k127_7733761_10 Voltage-dependent anion channel K03304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 403.0
BYD1_k127_7733761_11 protein containing LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 321.0
BYD1_k127_7733761_12 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000001055 255.0
BYD1_k127_7733761_13 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000003984 229.0
BYD1_k127_7733761_14 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000008025 184.0
BYD1_k127_7733761_15 Domain of unknown function (DUF4390) - - - 0.000000000000000000000000000000000000000000003664 170.0
BYD1_k127_7733761_16 Protein of unknown function (DUF1304) K08987 - - 0.0000000000000000000000000000000000000000000392 163.0
BYD1_k127_7733761_17 Belongs to the Smg family K03747 - - 0.00000000000000000000000000000000000008888 149.0
BYD1_k127_7733761_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 1.731e-228 717.0
BYD1_k127_7733761_3 COG0569 K transport systems, NAD-binding component K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 595.0
BYD1_k127_7733761_4 oxidase, subunit K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 526.0
BYD1_k127_7733761_5 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 524.0
BYD1_k127_7733761_6 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 491.0
BYD1_k127_7733761_7 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005883 463.0
BYD1_k127_7733761_8 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 434.0
BYD1_k127_7733761_9 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007983 413.0
BYD1_k127_7765243_0 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17229 - 1.8.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 413.0
BYD1_k127_7765243_1 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 334.0
BYD1_k127_7765243_2 Ribbon-helix-helix domain - - - 0.0000000000000000000000000000000000000004986 153.0
BYD1_k127_7765243_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000001196 123.0
BYD1_k127_778479_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 3.666e-218 693.0
BYD1_k127_778479_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 506.0
BYD1_k127_778479_10 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000000000000002064 197.0
BYD1_k127_778479_11 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000000000002284 199.0
BYD1_k127_778479_2 metal-dependent phosphoesterases (PHP family) K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004989 370.0
BYD1_k127_778479_3 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 355.0
BYD1_k127_778479_4 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 348.0
BYD1_k127_778479_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 348.0
BYD1_k127_778479_6 Belongs to the SUA5 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 299.0
BYD1_k127_778479_7 Peptidase M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007194 292.0
BYD1_k127_778479_8 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001438 276.0
BYD1_k127_778479_9 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001383 274.0
BYD1_k127_7845354_0 Cytochrome C and Quinol oxidase polypeptide I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 454.0
BYD1_k127_7845354_1 Fibronectin type 3 domain - - - 0.0000000000000000000003917 110.0
BYD1_k127_7869643_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1424.0
BYD1_k127_7869643_1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.0 1020.0
BYD1_k127_7869643_10 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 569.0
BYD1_k127_7869643_11 protein containing a von Willebrand factor type A (vWA) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 580.0
BYD1_k127_7869643_12 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004147 465.0
BYD1_k127_7869643_13 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 416.0
BYD1_k127_7869643_14 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 418.0
BYD1_k127_7869643_15 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 389.0
BYD1_k127_7869643_16 Putative heavy-metal chelation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 336.0
BYD1_k127_7869643_17 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 336.0
BYD1_k127_7869643_18 LysR substrate binding domain K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 324.0
BYD1_k127_7869643_19 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 310.0
BYD1_k127_7869643_2 Pyridine nucleotide-disulphide oxidoreductase - - - 9.16e-295 912.0
BYD1_k127_7869643_20 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 305.0
BYD1_k127_7869643_21 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 303.0
BYD1_k127_7869643_22 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 292.0
BYD1_k127_7869643_23 cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008271 266.0
BYD1_k127_7869643_24 oxidoreductase, gamma subunit K00172 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000002149 261.0
BYD1_k127_7869643_25 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000000000000000000000000000000314 248.0
BYD1_k127_7869643_26 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000005964 238.0
BYD1_k127_7869643_27 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000006764 201.0
BYD1_k127_7869643_28 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000004238 176.0
BYD1_k127_7869643_29 Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000005562 173.0
BYD1_k127_7869643_3 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 5.959e-291 910.0
BYD1_k127_7869643_30 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000000000000000000000000000001727 160.0
BYD1_k127_7869643_31 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000002285 156.0
BYD1_k127_7869643_34 - - - - 0.00000000000001221 76.0
BYD1_k127_7869643_4 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 8.356e-286 880.0
BYD1_k127_7869643_5 Polyphosphate kinase 2 (PPK2) - - - 1.088e-256 802.0
BYD1_k127_7869643_6 pyruvate flavodoxin ferredoxin oxidoreductase K00169 - 1.2.7.1 9.717e-210 662.0
BYD1_k127_7869643_7 PFAM Thiamine pyrophosphate K00170,K18356 - 1.2.1.58,1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 586.0
BYD1_k127_7869643_8 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 582.0
BYD1_k127_7869643_9 AAA domain (dynein-related subfamily) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 569.0
BYD1_k127_7971603_0 Mg chelatase subunit ChlI K07391 - - 4.34e-197 625.0
BYD1_k127_7971603_1 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 368.0
BYD1_k127_7971603_2 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000003182 148.0
BYD1_k127_7971603_3 Membrane fusogenic activity K09806 - - 0.0000000000000004089 80.0
BYD1_k127_7974669_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06020 - 3.6.3.25 6.226e-311 958.0
BYD1_k127_7974669_1 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 2.018e-198 639.0
BYD1_k127_7974669_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009625 449.0
BYD1_k127_7974669_3 Glycine cleavage system regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001119 241.0
BYD1_k127_7974669_4 Biotin-requiring enzyme - - - 0.0000000000000000000000114 106.0
BYD1_k127_8039141_0 Histidine kinase K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006922 464.0
BYD1_k127_8039141_1 Two component transcriptional regulator, winged helix family K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 288.0
BYD1_k127_8039141_2 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000000000000000000000000000000000000001342 240.0
BYD1_k127_8039141_3 Dienelactone hydrolase - - - 0.00000000000000000000000000000000175 138.0
BYD1_k127_8039141_4 Chemoreceptor zinc-binding domain - - - 0.000000000000000000418 90.0
BYD1_k127_8082303_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0 1046.0
BYD1_k127_8082303_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1019.0
BYD1_k127_8082303_10 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 286.0
BYD1_k127_8082303_11 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007233 270.0
BYD1_k127_8082303_12 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000007402 230.0
BYD1_k127_8082303_13 Belongs to the skp family K06142 - - 0.000000000000000000000000000000000000000000000000000004747 195.0
BYD1_k127_8082303_2 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006694 535.0
BYD1_k127_8082303_3 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 508.0
BYD1_k127_8082303_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 471.0
BYD1_k127_8082303_5 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 460.0
BYD1_k127_8082303_6 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007731 414.0
BYD1_k127_8082303_7 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005502 406.0
BYD1_k127_8082303_8 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 396.0
BYD1_k127_8082303_9 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005115 389.0
BYD1_k127_8087077_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 3.141e-236 735.0
BYD1_k127_8087077_1 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003359 580.0
BYD1_k127_8087077_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009618 361.0
BYD1_k127_8087077_3 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 337.0
BYD1_k127_8087077_4 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000000000000000000000000000000000000000000002866 177.0
BYD1_k127_8087077_5 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000006425 138.0
BYD1_k127_8087077_6 - - - - 0.00003024 47.0
BYD1_k127_8110903_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 607.0
BYD1_k127_8110903_1 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008683 524.0
BYD1_k127_8110903_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004152 541.0
BYD1_k127_8110903_3 COG1982 Arginine lysine ornithine decarboxylases K01584 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 420.0
BYD1_k127_8110903_4 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287,K18590 GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016646,GO:0019842,GO:0031406,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050896,GO:0051870,GO:0051871,GO:0055114,GO:0070401,GO:0070402,GO:0072341,GO:0097159,GO:1901265,GO:1901363 1.5.1.3 0.0000000000000000000000000000000000000000000000000005012 191.0
BYD1_k127_8110903_5 - - - - 0.0000000000000000000000000007424 117.0
BYD1_k127_8135354_0 Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 437.0
BYD1_k127_8135354_1 COGs COG3677 Transposase and inactivated derivatives K07480 - - 0.0000000000000000000000000000000000000000000000000000000000004191 224.0
BYD1_k127_8135354_2 Histidine kinase K02484 - 2.7.13.3 0.0000000000009271 69.0
BYD1_k127_8137405_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1436.0
BYD1_k127_8137405_1 Phosphoglucomutase K15778 - 5.4.2.2,5.4.2.8 3.341e-239 748.0
BYD1_k127_8137405_2 PLD-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 461.0
BYD1_k127_8137405_3 SMART chemotaxis sensory transducer - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005979 349.0
BYD1_k127_8137405_4 Psort location Cytoplasmic, score 8.96 K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004085 267.0
BYD1_k127_8137405_5 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000004951 196.0
BYD1_k127_8137405_6 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000004469 164.0
BYD1_k127_8147051_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.654e-244 773.0
BYD1_k127_8147051_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 1.372e-194 619.0
BYD1_k127_8147051_2 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 308.0
BYD1_k127_8147051_3 2-hydroxy-3-oxopropionate reductase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000004421 224.0
BYD1_k127_8147051_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000002218 187.0
BYD1_k127_815476_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 322.0
BYD1_k127_815476_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.00000000000000000000000000000000000000000000000000000000000000000002643 233.0
BYD1_k127_815476_2 Participates in transcription elongation, termination and antitermination K02601 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000001158 189.0
BYD1_k127_815476_3 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000002644 188.0
BYD1_k127_815476_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000002246 138.0
BYD1_k127_8222905_0 flagellar motor K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 365.0
BYD1_k127_8222905_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 332.0
BYD1_k127_8222905_2 Belongs to the ParA family K04562 - - 0.0000000000000000000000000000000000000001931 160.0
BYD1_k127_8222905_3 Flagellar biosynthesis regulator FlhF K02404 - - 0.000000000000000000000000007485 111.0
BYD1_k127_8222905_4 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.000000000000000004284 83.0
BYD1_k127_8232269_0 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 583.0
BYD1_k127_8232269_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 438.0
BYD1_k127_8232269_10 SlyX K03745 - - 0.00000000000001016 77.0
BYD1_k127_8232269_2 Nitrate TMAO reductase, membrane-bound tetraheme cytochrome c subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006393 359.0
BYD1_k127_8232269_3 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 332.0
BYD1_k127_8232269_4 Cytochrome b/b6/petB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 314.0
BYD1_k127_8232269_5 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 296.0
BYD1_k127_8232269_6 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000001359 232.0
BYD1_k127_8232269_7 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000001717 220.0
BYD1_k127_8232269_8 Thioredoxin-like domain - - - 0.00000000000000000000000000000000000000003757 158.0
BYD1_k127_8232269_9 Ethylbenzene dehydrogenase - - - 0.0000000000000000002042 95.0
BYD1_k127_8248720_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 376.0
BYD1_k127_8248720_1 PFAM Hemerythrin HHE cation binding domain protein - - - 0.00000000000000000000000000000000000001782 151.0
BYD1_k127_8248720_2 SIR2-like domain - - - 0.00000000000000000000001842 101.0
BYD1_k127_8248720_4 Chaperone protein DNAj - GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 - 0.00001727 55.0
BYD1_k127_831726_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1252.0
BYD1_k127_831726_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 9.359e-238 743.0
BYD1_k127_831726_10 D-ala D-ala ligase N-terminus K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 415.0
BYD1_k127_831726_11 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 388.0
BYD1_k127_831726_12 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 342.0
BYD1_k127_831726_13 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 301.0
BYD1_k127_831726_14 Class II aldolase adducin family protein K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 288.0
BYD1_k127_831726_15 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004675 252.0
BYD1_k127_831726_16 KTSC domain - - - 0.00000000000000000000000000000002722 127.0
BYD1_k127_831726_17 - - - - 0.0000000000000000000001674 100.0
BYD1_k127_831726_18 Protein of unknown function (DUF721) - - - 0.000000000000007223 80.0
BYD1_k127_831726_19 - - - - 0.0000003862 59.0
BYD1_k127_831726_2 PAC sensor-containing diguanylate cyclase phosphodiesterase - - - 1.256e-214 699.0
BYD1_k127_831726_3 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 576.0
BYD1_k127_831726_4 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 571.0
BYD1_k127_831726_5 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007103 551.0
BYD1_k127_831726_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009114 531.0
BYD1_k127_831726_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 516.0
BYD1_k127_831726_8 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 495.0
BYD1_k127_831726_9 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 463.0
BYD1_k127_8355043_0 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 3.044e-227 715.0
BYD1_k127_8355043_1 Belongs to the thiolase family K00626 - 2.3.1.9 3.716e-210 658.0
BYD1_k127_8355043_2 poly(R)-hydroxyalkanoic acid synthase K03821 - - 1.725e-205 644.0
BYD1_k127_8355043_3 COG1960 Acyl-CoA dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 594.0
BYD1_k127_8355043_4 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007487 426.0
BYD1_k127_8355043_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000643 285.0
BYD1_k127_8355043_6 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000004247 192.0
BYD1_k127_8355043_7 transcriptional - - - 0.000000000000000000000000000000000000000005834 158.0
BYD1_k127_8355043_8 DSBA-like thioredoxin domain - - - 0.0000000000000000000000001322 108.0
BYD1_k127_8397139_0 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009216 538.0
BYD1_k127_8397139_1 Phosphate-starvation-inducible E - - - 0.000000000000000000000000000000000001967 143.0
BYD1_k127_8397139_2 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.00000000000000000000000000004051 125.0
BYD1_k127_8495402_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 3.806e-275 855.0
BYD1_k127_8495402_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 2e-211 663.0
BYD1_k127_8495402_2 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 451.0
BYD1_k127_8495402_3 Isochorismatase hydrolase - - - 0.00000000000000000000000000000000000000000000000000000006929 204.0
BYD1_k127_8495402_4 Thioesterase superfamily K07107 - - 0.000000000000000000000000000000000000000000000000001702 185.0
BYD1_k127_8495402_5 Ferredoxin - - - 0.000000000000000000000000000000000000000007897 154.0
BYD1_k127_8495402_6 Iron-sulphur cluster biosynthesis - - - 0.00000000000000000000000000000000003569 141.0
BYD1_k127_8495402_7 - - - - 0.0000000000000000000000008694 110.0
BYD1_k127_8495402_8 - - - - 0.0000000001102 65.0
BYD1_k127_8505619_0 CHASE2 K01768 - 4.6.1.1 7.813e-246 779.0
BYD1_k127_8505619_1 Hemolysin activation secretion protein K07326 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007824 466.0
BYD1_k127_8505619_10 - - - - 0.000000000000000000000000000002466 130.0
BYD1_k127_8505619_11 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000006908 130.0
BYD1_k127_8505619_12 FecR protein - - - 0.00000000000000000000000001883 125.0
BYD1_k127_8505619_2 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 453.0
BYD1_k127_8505619_3 TIGRFAM adhesin HecA family 20-residue repeat (two copies), filamentous hemagglutinin family N-terminal domain K15125 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009216 460.0
BYD1_k127_8505619_4 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001744 256.0
BYD1_k127_8505619_5 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000241 269.0
BYD1_k127_8505619_6 Protein of unknown function (DUF2846) - - - 0.00000000000000000000000000000000000000000000000000000000000006289 216.0
BYD1_k127_8505619_7 Protein of unknown function (DUF560) - - - 0.0000000000000000000000000000000000000000001543 179.0
BYD1_k127_8505619_8 Colicin-E5 Imm protein - - - 0.00000000000000000000000000000000000000001953 154.0
BYD1_k127_8505619_9 Pfam:Colicin_C - - - 0.0000000000000000000000000000003899 145.0
BYD1_k127_8555868_0 serine threonine protein kinase K12132 - 2.7.11.1 6.773e-236 741.0
BYD1_k127_8555868_1 serine threonine protein kinase K12132 - 2.7.11.1 2.166e-212 674.0
BYD1_k127_8555868_2 Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides K10012 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008702 444.0
BYD1_k127_8555868_3 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000000000000000000000000000009203 231.0
BYD1_k127_8555868_4 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000001202 85.0
BYD1_k127_8567134_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 8.931e-203 647.0
BYD1_k127_8567134_1 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 2.089e-197 638.0
BYD1_k127_8567134_10 Disulfide bond formation protein DsbB K03611 - - 0.000000000000000002614 91.0
BYD1_k127_8567134_2 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 546.0
BYD1_k127_8567134_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K03472 - 1.2.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 468.0
BYD1_k127_8567134_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 464.0
BYD1_k127_8567134_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000002489 240.0
BYD1_k127_8567134_6 CoA-binding protein K06929 - - 0.000000000000000000000000000000000000000000000000000000005584 201.0
BYD1_k127_8567134_7 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000000001967 207.0
BYD1_k127_8567134_8 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000000000000002161 178.0
BYD1_k127_8567134_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000000000000001763 133.0
BYD1_k127_8619772_0 Periplasmic binding protein K01999 - - 1.238e-256 796.0
BYD1_k127_8619772_1 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000708 593.0
BYD1_k127_8619772_11 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000001326 72.0
BYD1_k127_8619772_12 - - - - 0.000000002243 65.0
BYD1_k127_8619772_2 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004658 481.0
BYD1_k127_8619772_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003251 386.0
BYD1_k127_8619772_4 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 323.0
BYD1_k127_8619772_5 ATPases involved in chromosome partitioning - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003837 325.0
BYD1_k127_8619772_6 Type 12 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000423 233.0
BYD1_k127_8619772_7 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000001635 202.0
BYD1_k127_8619772_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000271 143.0
BYD1_k127_8619772_9 - - - - 0.000000000000000000000000000000009083 132.0
BYD1_k127_8620852_0 Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide K00376 - 1.7.2.4 0.0 1405.0
BYD1_k127_8620852_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 8.013e-271 844.0
BYD1_k127_8620852_10 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 447.0
BYD1_k127_8620852_11 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 431.0
BYD1_k127_8620852_12 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006463 418.0
BYD1_k127_8620852_13 Periplasmic copper-binding protein (NosD) K07218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 419.0
BYD1_k127_8620852_14 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 398.0
BYD1_k127_8620852_15 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 370.0
BYD1_k127_8620852_16 His Kinase A (phosphoacceptor) domain K15011 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 380.0
BYD1_k127_8620852_17 PFAM UbiA prenyltransferase K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 355.0
BYD1_k127_8620852_18 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001161 279.0
BYD1_k127_8620852_19 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 - 3.1.4.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000559 272.0
BYD1_k127_8620852_2 Periplasmic copper-binding protein (NosD) K07218 - - 4.756e-197 637.0
BYD1_k127_8620852_20 COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K15012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009379 240.0
BYD1_k127_8620852_21 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000000000000000000000000000000000001037 247.0
BYD1_k127_8620852_22 SCO1/SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000108 213.0
BYD1_k127_8620852_23 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000006816 202.0
BYD1_k127_8620852_24 Copper chaperone PCu(A)C K09796 - - 0.000000000000000000000000000000000000000000000001975 179.0
BYD1_k127_8620852_25 Cytochrome C oxidase, cbb3-type, subunit III K08738 - - 0.0000000000000000000000000000000000000000009609 159.0
BYD1_k127_8620852_26 preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000000000000004665 157.0
BYD1_k127_8620852_27 - - - - 0.000000000000000000000000000000000000000006924 159.0
BYD1_k127_8620852_28 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000001491 155.0
BYD1_k127_8620852_29 cheY-homologous receiver domain - - - 0.000000000000000000000000000000001742 141.0
BYD1_k127_8620852_3 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 1.729e-194 623.0
BYD1_k127_8620852_30 Competence protein - - - 0.000000000000000000000000000001353 134.0
BYD1_k127_8620852_31 Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway K03181 - 4.1.3.40 0.000000000000000000000773 105.0
BYD1_k127_8620852_32 DnaJ domain - - - 0.00001174 55.0
BYD1_k127_8620852_4 4Fe-4S binding domain K02574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003696 559.0
BYD1_k127_8620852_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 523.0
BYD1_k127_8620852_6 PFAM NnrS family protein K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 505.0
BYD1_k127_8620852_7 Protein of unknown function (DUF3365) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005021 515.0
BYD1_k127_8620852_8 4Fe-4S binding domain K02573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 464.0
BYD1_k127_8620852_9 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004985 454.0
BYD1_k127_8763352_0 fad dependent oxidoreductase K07137 - - 7.531e-266 826.0
BYD1_k127_8763352_1 Transglutaminase/protease-like homologues K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003356 613.0
BYD1_k127_8763352_10 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001439 285.0
BYD1_k127_8763352_11 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001354 270.0
BYD1_k127_8763352_12 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001704 274.0
BYD1_k127_8763352_13 Belongs to the ABC transporter superfamily K06857 - 3.6.3.55 0.000000000000000000000000000000000000000000000000000000000000000006928 243.0
BYD1_k127_8763352_14 PBP superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000009519 232.0
BYD1_k127_8763352_15 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000008807 188.0
BYD1_k127_8763352_16 Belongs to the UPF0225 family K09858 - - 0.000000000000000000000000000000000000000000000000003805 184.0
BYD1_k127_8763352_17 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000002118 139.0
BYD1_k127_8763352_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009142 560.0
BYD1_k127_8763352_3 Belongs to the methyltransferase superfamily K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 520.0
BYD1_k127_8763352_4 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 492.0
BYD1_k127_8763352_5 Bacterial extracellular solute-binding protein K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 430.0
BYD1_k127_8763352_6 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 411.0
BYD1_k127_8763352_7 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 334.0
BYD1_k127_8763352_8 lytic murein transglycosylase K08305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 337.0
BYD1_k127_8763352_9 Binding-protein-dependent transport system inner membrane component K05773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 297.0
BYD1_k127_880445_0 Pirin K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007078 481.0
BYD1_k127_880445_1 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000009852 139.0
BYD1_k127_880445_2 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000006925 134.0
BYD1_k127_8840877_0 Elongator protein 3, MiaB family, Radical SAM - - - 2.304e-223 696.0
BYD1_k127_8840877_1 twitching motility protein K02670 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 580.0
BYD1_k127_8840877_2 PFAM Aminotransferase class I and II K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 580.0
BYD1_k127_8840877_3 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004409 552.0
BYD1_k127_8840877_4 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000828 450.0
BYD1_k127_8840877_5 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 302.0
BYD1_k127_8840877_6 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000004673 250.0
BYD1_k127_8840877_7 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.000000000000001616 78.0
BYD1_k127_8896_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1213.0
BYD1_k127_8896_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 8.826e-259 805.0
BYD1_k127_8896_10 LytTr DNA-binding domain K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 288.0
BYD1_k127_8896_11 TonB C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002754 257.0
BYD1_k127_8896_12 Sel1 domain protein repeat-containing protein K07126 - - 0.0000000000000000000000000000000000000000004213 177.0
BYD1_k127_8896_13 Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors K12973 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009279,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016409,GO:0016416,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044462,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.251 0.000000000000000000000000000000000000001148 157.0
BYD1_k127_8896_14 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000001368 129.0
BYD1_k127_8896_15 Belongs to the transcriptional regulatory Fis family K03557 - - 0.0000000000000000000000001156 115.0
BYD1_k127_8896_16 PIN domain - - - 0.000000000000000000000008088 107.0
BYD1_k127_8896_18 UbiH UbiF VisC COQ6 family K03185 - - 0.00000000000000000002931 90.0
BYD1_k127_8896_19 alginate biosynthesis protein AlgZ FimS K08082 - 2.7.13.3 0.000000000001224 68.0
BYD1_k127_8896_2 Belongs to the GARS family K01945 - 6.3.4.13 1.523e-212 668.0
BYD1_k127_8896_20 PFAM Ankyrin K10799 - 2.4.2.30 0.0000007764 55.0
BYD1_k127_8896_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008005 539.0
BYD1_k127_8896_4 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003806 519.0
BYD1_k127_8896_5 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 473.0
BYD1_k127_8896_6 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004501 360.0
BYD1_k127_8896_7 enzyme of heme biosynthesis K02498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 329.0
BYD1_k127_8896_8 HemX, putative uroporphyrinogen-III C-methyltransferase K02496 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 310.0
BYD1_k127_8896_9 synthase K01719 - 4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 288.0
BYD1_k127_8909313_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1010.0
BYD1_k127_8909313_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 363.0
BYD1_k127_8909313_2 dihydropteroate synthase K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 355.0
BYD1_k127_9054475_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 2.614e-208 674.0
BYD1_k127_9054475_1 AcyL-CoA dehydrogenase K06445 - - 2.268e-200 629.0
BYD1_k127_9084923_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 2.081e-298 918.0
BYD1_k127_9084923_1 His Kinase A (phosphoacceptor) domain - - - 6.341e-245 803.0
BYD1_k127_9084923_10 Cation efflux family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 503.0
BYD1_k127_9084923_11 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 441.0
BYD1_k127_9084923_12 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 417.0
BYD1_k127_9084923_13 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000557 358.0
BYD1_k127_9084923_14 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 307.0
BYD1_k127_9084923_16 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005112 282.0
BYD1_k127_9084923_17 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004066 254.0
BYD1_k127_9084923_18 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000000000009533 236.0
BYD1_k127_9084923_19 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000003389 226.0
BYD1_k127_9084923_2 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 9.451e-216 678.0
BYD1_k127_9084923_20 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000001197 227.0
BYD1_k127_9084923_21 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000001869 221.0
BYD1_k127_9084923_22 Secreted repeat of unknown function - - - 0.000000000000000000000000000000000000000000000000000000000000004239 218.0
BYD1_k127_9084923_23 helix_turn_helix, Lux Regulon K02479 - - 0.0000000000000000000000000000000000000000000000000001177 193.0
BYD1_k127_9084923_24 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000001086 173.0
BYD1_k127_9084923_25 - - - - 0.000000000000000000000000000000000000007429 166.0
BYD1_k127_9084923_26 Protein of unknown function (DUF2789) - - - 0.0000000000000000002098 89.0
BYD1_k127_9084923_27 Protein of unknown function (DUF2892) - - - 0.0000000000000005323 79.0
BYD1_k127_9084923_3 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide - - - 5.054e-209 656.0
BYD1_k127_9084923_4 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000375 610.0
BYD1_k127_9084923_5 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 581.0
BYD1_k127_9084923_6 Desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 552.0
BYD1_k127_9084923_7 Metal dependent phosphohydrolases with conserved 'HD' motif. K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 544.0
BYD1_k127_9084923_8 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 514.0
BYD1_k127_9084923_9 Iron-containing alcohol dehydrogenase K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003408 505.0
BYD1_k127_913293_0 Sulfate transporter antisigma-factor antagonist STAS K03321 - - 2.167e-245 771.0
BYD1_k127_913293_1 metal ion transport K14445 - - 1.289e-212 670.0
BYD1_k127_913293_2 Sulfate transporter antisigma-factor antagonist STAS - - - 0.00000000000000000000000000000000000000000000000000000000000000003236 227.0
BYD1_k127_913293_3 PFAM CBS domain containing protein - - - 0.000000000757 68.0
BYD1_k127_9150476_0 GGDEF domain - - - 6.224e-266 857.0
BYD1_k127_9150476_1 Activator of aromatic catabolism - - - 3.607e-222 704.0
BYD1_k127_9150476_10 Isochorismatase family - - - 0.000000000000000000000000000000000000000003177 162.0
BYD1_k127_9150476_11 - - - - 0.00000000761 63.0
BYD1_k127_9150476_2 PFAM Aldehyde dehydrogenase K00141 - 1.2.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005795 614.0
BYD1_k127_9150476_3 helix_turn_helix gluconate operon transcriptional repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007063 618.0
BYD1_k127_9150476_4 Alcohol dehydrogenase GroES-like domain K00055 - 1.1.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 544.0
BYD1_k127_9150476_5 Rieske [2Fe-2S] domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 501.0
BYD1_k127_9150476_6 COG2202 FOG PAS PAC domain K03776 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004875 511.0
BYD1_k127_9150476_7 Esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 454.0
BYD1_k127_9150476_8 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 371.0
BYD1_k127_9150476_9 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 K21832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 338.0
BYD1_k127_9224765_0 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 487.0
BYD1_k127_9224765_1 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000001348 190.0
BYD1_k127_9320469_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 2.02e-236 737.0
BYD1_k127_9320469_1 - - - - 1.786e-204 640.0
BYD1_k127_9320469_10 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.0000000000000000000000000000000000009297 146.0
BYD1_k127_9320469_11 Cytochrome c - - - 0.000000000000000000000007394 106.0
BYD1_k127_9320469_2 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 562.0
BYD1_k127_9320469_3 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 553.0
BYD1_k127_9320469_4 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 488.0
BYD1_k127_9320469_5 glutamine synthetase K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 293.0
BYD1_k127_9320469_6 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000003371 228.0
BYD1_k127_9320469_7 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000003854 224.0
BYD1_k127_9320469_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000359 235.0
BYD1_k127_9320469_9 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000000000000002711 148.0
BYD1_k127_9420544_0 Multicopper oxidase - - - 0.0 1060.0
BYD1_k127_9420544_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.793e-276 855.0
BYD1_k127_9420544_10 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 304.0
BYD1_k127_9420544_11 AAA domain K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 305.0
BYD1_k127_9420544_12 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008931 274.0
BYD1_k127_9420544_13 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000001553 207.0
BYD1_k127_9420544_14 Pilin (bacterial filament) K02650 - - 0.00000000000000000000000000000000000000000000000002556 184.0
BYD1_k127_9420544_15 Glycine zipper 2TM domain - - - 0.00000000000000000000000000000000000008054 151.0
BYD1_k127_9420544_16 bacterial (prokaryotic) histone like domain K03530 - - 0.000000000000000000000000000000000006985 139.0
BYD1_k127_9420544_18 Glycine zipper 2TM domain - - - 0.000007489 54.0
BYD1_k127_9420544_2 Single-stranded-DNA-specific exonuclease RecJ K07462 - - 3.504e-243 780.0
BYD1_k127_9420544_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.972e-239 748.0
BYD1_k127_9420544_4 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003585 635.0
BYD1_k127_9420544_5 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 604.0
BYD1_k127_9420544_6 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 575.0
BYD1_k127_9420544_7 May be involved in recombination K03554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007531 364.0
BYD1_k127_9420544_8 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 355.0
BYD1_k127_9420544_9 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003739 340.0
BYD1_k127_9425401_0 Phosphoglycerate kinase K00927 - 2.7.2.3 6.207e-224 697.0
BYD1_k127_9425401_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 8.82e-212 673.0
BYD1_k127_9425401_2 TIGRFAM fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 593.0
BYD1_k127_9425401_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004272 350.0
BYD1_k127_9425401_4 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000001128 158.0
BYD1_k127_9541954_0 Pfam Fatty acid - - - 5.941e-260 824.0
BYD1_k127_9541954_1 transport system, permease and ATPase K02471 - - 4.305e-247 790.0
BYD1_k127_9541954_2 Alkyl hydroperoxide reductase K03387 - - 2.062e-245 767.0
BYD1_k127_9541954_3 C-terminal domain of 1-Cys peroxiredoxin K03386 GO:0003674,GO:0003824,GO:0004601,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009321,GO:0009605,GO:0009636,GO:0009970,GO:0009987,GO:0009991,GO:0010033,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0032843,GO:0032991,GO:0033194,GO:0033195,GO:0033212,GO:0033214,GO:0033554,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0097237,GO:0098754,GO:0098771,GO:0098869,GO:1901700,GO:1902494,GO:1990204,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 359.0
BYD1_k127_9541954_4 HDOD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 318.0
BYD1_k127_9541954_5 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K12267 - 1.8.4.11,1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001325 273.0
BYD1_k127_9541954_6 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000264 158.0
BYD1_k127_9541954_7 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000004582 85.0
BYD1_k127_9561120_0 TonB dependent receptor K02014 - - 0.0 1093.0
BYD1_k127_9561120_1 COG0210 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 0.0 1014.0
BYD1_k127_9561120_10 Belongs to the enoyl-CoA hydratase isomerase family K18383 - 4.1.2.41,4.2.1.101 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 479.0
BYD1_k127_9561120_11 Domain of unknown function (DUF4010) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 454.0
BYD1_k127_9561120_12 of the major facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 435.0
BYD1_k127_9561120_13 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 431.0
BYD1_k127_9561120_14 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17229 - 1.8.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 407.0
BYD1_k127_9561120_15 NmrA-like family K19267 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007231 394.0
BYD1_k127_9561120_16 DJ-1/PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 342.0
BYD1_k127_9561120_17 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 340.0
BYD1_k127_9561120_18 Belongs to the MEMO1 family K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 312.0
BYD1_k127_9561120_19 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 289.0
BYD1_k127_9561120_2 Diguanylate cyclase - - - 3.775e-319 1015.0
BYD1_k127_9561120_20 COG2207 AraC-type DNA-binding domain-containing proteins K18954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001181 258.0
BYD1_k127_9561120_21 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000002502 241.0
BYD1_k127_9561120_23 ferrous iron binding K06990,K09141 - - 0.000000000000000000000000000000000000000000000000000000000000005132 223.0
BYD1_k127_9561120_24 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000008971 229.0
BYD1_k127_9561120_25 Thioesterase-like superfamily K01075 - 3.1.2.23 0.00000000000000000000000000000000000000000000000000000000000001359 218.0
BYD1_k127_9561120_26 Domain of unknown function (DUF1932) - - - 0.000000000000000000000000000000000000000000000000000000002178 203.0
BYD1_k127_9561120_27 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000000000000000000002888 175.0
BYD1_k127_9561120_28 Ribbon-helix-helix domain - - - 0.00000000000000000000000000000000000000004453 155.0
BYD1_k127_9561120_29 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.00000000000000000000000000000000000004567 150.0
BYD1_k127_9561120_3 Cytochrome c554 and c-prime - - - 4.979e-278 867.0
BYD1_k127_9561120_30 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000001854 124.0
BYD1_k127_9561120_4 Belongs to the cytochrome P450 family - - - 3.543e-210 660.0
BYD1_k127_9561120_5 belongs to the aldehyde dehydrogenase family K21802 - 1.2.1.67 1.913e-208 670.0
BYD1_k127_9561120_6 Reductase C-terminal K00529 - 1.18.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006364 566.0
BYD1_k127_9561120_7 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 559.0
BYD1_k127_9561120_8 dehydrogenases and related proteins K10219 - 1.1.1.312 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 513.0
BYD1_k127_9561120_9 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007447 501.0
BYD1_k127_9597036_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 551.0
BYD1_k127_9597036_1 Nucleotidyl transferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 480.0
BYD1_k127_9749582_0 AMP-binding enzyme C-terminal domain K18661 - - 3.454e-202 640.0
BYD1_k127_9749582_1 CobB/CobQ-like glutamine amidotransferase domain K02224 - 6.3.5.11,6.3.5.9 3.525e-196 621.0
BYD1_k127_9749582_10 Cob(II)yrinic acid a,c-diamide reductase K02303,K04719 - 1.13.11.79,2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 328.0
BYD1_k127_9749582_11 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006481 304.0
BYD1_k127_9749582_12 COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008209 314.0
BYD1_k127_9749582_13 EVE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003792 251.0
BYD1_k127_9749582_14 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000002088 244.0
BYD1_k127_9749582_15 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000002496 232.0
BYD1_k127_9749582_16 amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000321 213.0
BYD1_k127_9749582_17 PFAM Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000000000000000000000000000000000000000002089 160.0
BYD1_k127_9749582_18 Invasion gene expression up-regulator SirB - - - 0.0000000000000000000000002948 110.0
BYD1_k127_9749582_19 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000000000000009275 108.0
BYD1_k127_9749582_2 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005811 535.0
BYD1_k127_9749582_20 - K09892 - - 0.00000142 52.0
BYD1_k127_9749582_3 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007636 530.0
BYD1_k127_9749582_4 Periplasmic binding protein domain K10439 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007341 462.0
BYD1_k127_9749582_5 outer membrane cobalamin receptor K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 466.0
BYD1_k127_9749582_6 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 426.0
BYD1_k127_9749582_7 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 428.0
BYD1_k127_9749582_8 membrane transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 424.0
BYD1_k127_9749582_9 abc-type fe3 -hydroxamate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 324.0
BYD1_k127_9792640_0 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 578.0
BYD1_k127_9792640_1 P-loop ATPase protein family K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 387.0
BYD1_k127_9792640_2 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001429 278.0
BYD1_k127_9792640_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006261 246.0
BYD1_k127_9792640_4 PFAM sigma 54 modulation protein ribosomal protein S30EA K05808 - - 0.000000000000000000000000000000000000000000000000004433 183.0
BYD1_k127_9827226_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 3.769e-227 711.0
BYD1_k127_9827226_1 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 461.0
BYD1_k127_9827226_2 Domain of unknown function (DUF4440) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 351.0
BYD1_k127_9858727_0 carbonic anhydrase K01674 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 393.0
BYD1_k127_9858727_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 342.0
BYD1_k127_9893358_0 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 481.0
BYD1_k127_9893358_1 PFAM peptidase M16 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002264 445.0
BYD1_k127_9893358_2 Belongs to the methyltransferase superfamily K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000002685 221.0
BYD1_k127_9893358_3 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000000000000001749 212.0
BYD1_k127_9893358_4 Protein of unknown function (DUF983) - - - 0.00000000000000000000000000000001295 140.0
BYD1_k127_9898945_0 Uncharacterized protein family UPF0004 K06168 - 2.8.4.3 4.447e-215 680.0
BYD1_k127_9898945_1 PhoH-like phosphate starvation-inducible protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 490.0
BYD1_k127_9898945_10 - - - - 0.0000000004131 65.0
BYD1_k127_9898945_11 PFAM Sporulation domain protein - - - 0.000002155 59.0
BYD1_k127_9898945_2 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004959 414.0
BYD1_k127_9898945_3 Mg2 and Co2 transporter CorC K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 400.0
BYD1_k127_9898945_4 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 379.0
BYD1_k127_9898945_5 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 361.0
BYD1_k127_9898945_6 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 328.0
BYD1_k127_9898945_7 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000000000000586 232.0
BYD1_k127_9898945_8 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000006313 208.0
BYD1_k127_9898945_9 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000000000000000000000000000002409 197.0
BYD1_k127_9959122_0 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 - 6.4.1.1 6.61e-321 989.0
BYD1_k127_9959122_1 Ammonium Transporter Family K03320,K06580 - - 1.809e-225 703.0
BYD1_k127_9959122_2 PFAM Hemerythrin HHE cation binding domain K07216 - - 0.000000000000000009795 89.0