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Overview

ID MAG00051
Name BYD1_bin.72
Sample SMP0001
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Rhodocyclaceae
Genus Nitricoxidireducens
Species
Assembly information
Completeness (%) 91.57
Contamination (%) 2.68
GC content (%) 65.0
N50 (bp) 26,703
Genome size (bp) 3,527,659

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3248

Gene name Description KEGG GOs EC E-value Score Sequence
BYD1_k127_10033139_0 pilus assembly protein K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 452.0
BYD1_k127_10033139_1 Pilus formation protein N terminal region K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 451.0
BYD1_k127_10033139_2 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 321.0
BYD1_k127_10033139_3 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009141 299.0
BYD1_k127_10033139_4 TadE-like protein - - - 0.00000000000000000000000000000000002998 144.0
BYD1_k127_10033139_5 TadE-like protein - - - 0.0000000000000000000000000000000729 131.0
BYD1_k127_10033139_6 - - - - 0.0000000000000000000008653 100.0
BYD1_k127_10080945_0 Acyl-CoA synthetase (NDP forming) K09181 - - 0.0 1247.0
BYD1_k127_10080945_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1028.0
BYD1_k127_10080945_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 592.0
BYD1_k127_10080945_3 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 507.0
BYD1_k127_10080945_4 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 436.0
BYD1_k127_10080945_5 PFAM adenylyl cyclase class-3 4 guanylyl cyclase K07216 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 374.0
BYD1_k127_10080945_6 DNA-3-methyladenine glycosylase I K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005225 295.0
BYD1_k127_10080945_7 tellurite resistance protein - - - 0.000000000000000000000000000000000000000000000000000000007461 203.0
BYD1_k127_10080945_8 His Kinase A (phosphoacceptor) domain K11527 - 2.7.13.3 0.0000001373 60.0
BYD1_k127_10080945_9 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00002283 49.0
BYD1_k127_10099314_0 Phospholipase D Active site motif K01115 - 3.1.4.4 6.157e-311 969.0
BYD1_k127_10099314_1 Desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009305 555.0
BYD1_k127_10099314_10 Redoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000001619 242.0
BYD1_k127_10099314_11 Cobalamin B12-binding domain protein K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000008789 243.0
BYD1_k127_10099314_12 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000006815 224.0
BYD1_k127_10099314_13 Pas domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000003469 207.0
BYD1_k127_10099314_14 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000004551 178.0
BYD1_k127_10099314_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 479.0
BYD1_k127_10099314_3 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 459.0
BYD1_k127_10099314_4 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008506 421.0
BYD1_k127_10099314_5 2Fe-2S iron-sulfur cluster binding domain K04755,K08952,K08953,K08954 GO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0046858 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 396.0
BYD1_k127_10099314_6 Cache domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 364.0
BYD1_k127_10099314_7 endonuclease exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 295.0
BYD1_k127_10099314_8 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 291.0
BYD1_k127_10099314_9 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001353 277.0
BYD1_k127_10108745_0 DNA topoisomerase III K03169 - 5.99.1.2 0.0 1165.0
BYD1_k127_10108745_1 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004774 513.0
BYD1_k127_10108745_10 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000188 252.0
BYD1_k127_10108745_11 Metal-dependent hydrolase K07043 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003827 257.0
BYD1_k127_10108745_12 Bacterial protein of unknown function (DUF924) - - - 0.00000000000000000000000000000000000000000000000000000000009394 210.0
BYD1_k127_10108745_13 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.000000000000000000000000000000000000000000000000000000002986 202.0
BYD1_k127_10108745_14 VTC domain - - - 0.0000000000000000000000000000000000000000000001514 177.0
BYD1_k127_10108745_15 Domain of unknown function (DUF4956) - - - 0.000000000000000000000000000000000000003346 154.0
BYD1_k127_10108745_16 Protein conserved in bacteria K09954 - - 0.000000000000000000000000000000001206 130.0
BYD1_k127_10108745_17 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000001758 119.0
BYD1_k127_10108745_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 437.0
BYD1_k127_10108745_3 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003788 411.0
BYD1_k127_10108745_4 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 387.0
BYD1_k127_10108745_5 protein containing LysM domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 360.0
BYD1_k127_10108745_6 PFAM Short-chain dehydrogenase reductase SDR K00034 - 1.1.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 324.0
BYD1_k127_10108745_7 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 310.0
BYD1_k127_10108745_8 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001652 264.0
BYD1_k127_10108745_9 Belongs to the Dps family K04047 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001378 255.0
BYD1_k127_1022724_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1503.0
BYD1_k127_1022724_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1106.0
BYD1_k127_1022724_10 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 342.0
BYD1_k127_1022724_11 Enoyl-CoA hydratase/isomerase K11264 - 4.1.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000073 336.0
BYD1_k127_1022724_12 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 321.0
BYD1_k127_1022724_13 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 319.0
BYD1_k127_1022724_14 Belongs to the SUA5 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 295.0
BYD1_k127_1022724_15 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 290.0
BYD1_k127_1022724_16 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001642 278.0
BYD1_k127_1022724_17 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000000000000000001165 207.0
BYD1_k127_1022724_18 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000000000000003971 192.0
BYD1_k127_1022724_19 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000009223 169.0
BYD1_k127_1022724_2 Participates in both transcription termination and antitermination K02600 - - 2.066e-235 736.0
BYD1_k127_1022724_20 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000000000000000001107 159.0
BYD1_k127_1022724_21 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000000000002774 156.0
BYD1_k127_1022724_3 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 2.304e-223 696.0
BYD1_k127_1022724_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 491.0
BYD1_k127_1022724_5 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 492.0
BYD1_k127_1022724_6 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 479.0
BYD1_k127_1022724_7 metal-dependent phosphoesterases (PHP family) K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 372.0
BYD1_k127_1022724_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 361.0
BYD1_k127_1022724_9 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 345.0
BYD1_k127_10242032_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1501.0
BYD1_k127_10242032_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 469.0
BYD1_k127_10242032_2 Single-strand binding protein family - - - 0.00000000000000000000000000000000000000000000000000000000000002025 217.0
BYD1_k127_10270334_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004094 547.0
BYD1_k127_10270334_1 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001338 244.0
BYD1_k127_10270334_2 TIGRFAM TRAP transporter, DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000404 197.0
BYD1_k127_10341960_0 Proline dehydrogenase - - - 7.022e-274 872.0
BYD1_k127_10341960_1 COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family K00819 - 2.6.1.13 6.666e-225 717.0
BYD1_k127_10341960_10 Type II secretion system (T2SS), protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000003591 209.0
BYD1_k127_10341960_11 Hep Hag repeat protein K01179,K01207 - 3.2.1.4,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000005991 231.0
BYD1_k127_10341960_12 Hep Hag repeat protein K01179,K01207 - 3.2.1.4,3.2.1.52 0.000000000000000000000000000000000000000000000000000000001104 231.0
BYD1_k127_10341960_13 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000000000000000003701 193.0
BYD1_k127_10341960_14 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000000000000009193 192.0
BYD1_k127_10341960_15 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000000000000000724 157.0
BYD1_k127_10341960_16 Transglycosylase SLT domain K01185 - 3.2.1.17 0.000000000000000000000000000000000009619 151.0
BYD1_k127_10341960_17 Type II secretory pathway, pseudopilin - - - 0.00000000000000000000000000000000003142 139.0
BYD1_k127_10341960_18 - - - - 0.0000000000000000000001257 107.0
BYD1_k127_10341960_19 WbqC-like protein family - - - 0.0000000000000000000006581 100.0
BYD1_k127_10341960_2 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 7.779e-194 636.0
BYD1_k127_10341960_20 - - - - 0.000000000004756 78.0
BYD1_k127_10341960_21 - - - - 0.00000000008317 74.0
BYD1_k127_10341960_22 Polysaccharide lyase - - - 0.0000000000903 76.0
BYD1_k127_10341960_24 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.000001591 59.0
BYD1_k127_10341960_3 dehydratase K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 535.0
BYD1_k127_10341960_4 Secretin and TonB N terminus short domain K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 522.0
BYD1_k127_10341960_5 Type II secretion system (T2SS), protein F K02455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 363.0
BYD1_k127_10341960_6 Domain of unknown function (DUF4962) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009426 363.0
BYD1_k127_10341960_7 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005612 334.0
BYD1_k127_10341960_8 PAC sensor signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000009078 251.0
BYD1_k127_10341960_9 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000002797 250.0
BYD1_k127_10481132_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 4.986e-286 882.0
BYD1_k127_10481132_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005363 541.0
BYD1_k127_10481132_2 D-Ala-D-Ala carboxypeptidase K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 469.0
BYD1_k127_10481132_3 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008773 396.0
BYD1_k127_10481132_4 8-amino-7-oxononanoate synthase K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006467 405.0
BYD1_k127_10481132_5 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935,K02169 - 2.1.1.197,6.3.3.3 0.00000000000000000000000000000000000000000000000000000000005647 214.0
BYD1_k127_10481132_6 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935,K02169 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.197,6.3.3.3 0.0000000000000000000000000000000000000000000005297 175.0
BYD1_k127_10481132_7 carboxylic ester hydrolase activity K02170 - 3.1.1.85 0.00000000000000000000000000000000000007224 156.0
BYD1_k127_10481132_8 membrane - - - 0.0000000000000000000000000000000003646 135.0
BYD1_k127_10481132_9 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000001947 88.0
BYD1_k127_10579401_0 GGDEF domain K13590 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 581.0
BYD1_k127_10579401_1 PFAM N-acetylneuraminic acid synthase K01654,K15898 - 2.5.1.56,2.5.1.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 544.0
BYD1_k127_10579401_10 Cytidylyltransferase K00983 - 2.7.7.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007696 285.0
BYD1_k127_10579401_11 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002828 274.0
BYD1_k127_10579401_12 Pseudaminic acid biosynthesis-associated methylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001343 258.0
BYD1_k127_10579401_13 Spore coat polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000006028 248.0
BYD1_k127_10579401_14 Histidine biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000002503 222.0
BYD1_k127_10579401_15 LPS biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000002774 184.0
BYD1_k127_10579401_16 TIGRFAM pseudaminic acid biosynthesis N-acetyl transferase - - - 0.00000000000000000000000000000000000000000000000001289 190.0
BYD1_k127_10579401_17 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 GO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000796 184.0
BYD1_k127_10579401_18 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000002688 168.0
BYD1_k127_10579401_19 Protein of unknown function (DUF354) - - - 0.00000000000000000000000005738 123.0
BYD1_k127_10579401_2 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 505.0
BYD1_k127_10579401_20 - - - - 0.0000004498 53.0
BYD1_k127_10579401_3 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 507.0
BYD1_k127_10579401_4 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 480.0
BYD1_k127_10579401_5 DegT/DnrJ/EryC1/StrS aminotransferase family K12452 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 464.0
BYD1_k127_10579401_6 Histidine kinase K07675 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009339 451.0
BYD1_k127_10579401_7 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005082 352.0
BYD1_k127_10579401_8 tRNA processing - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 347.0
BYD1_k127_10579401_9 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004917 281.0
BYD1_k127_10669897_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1646.0
BYD1_k127_10669897_1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1363.0
BYD1_k127_10669897_10 PilZ domain K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 487.0
BYD1_k127_10669897_11 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 471.0
BYD1_k127_10669897_12 Protein of unknown function (DUF2863) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 464.0
BYD1_k127_10669897_13 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009918 473.0
BYD1_k127_10669897_14 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 413.0
BYD1_k127_10669897_15 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 414.0
BYD1_k127_10669897_16 Ankyrin repeat K00799,K06893 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002775 371.0
BYD1_k127_10669897_17 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 348.0
BYD1_k127_10669897_18 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000623 327.0
BYD1_k127_10669897_19 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 344.0
BYD1_k127_10669897_2 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K01214 - 3.2.1.68 0.0 1101.0
BYD1_k127_10669897_20 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 287.0
BYD1_k127_10669897_21 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 285.0
BYD1_k127_10669897_22 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 285.0
BYD1_k127_10669897_23 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006726 273.0
BYD1_k127_10669897_24 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001853 266.0
BYD1_k127_10669897_25 Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003808 277.0
BYD1_k127_10669897_26 PFAM Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005063 254.0
BYD1_k127_10669897_27 Methylmuconolactone methyl-isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005534 260.0
BYD1_k127_10669897_28 Isochorismatase hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000002676 225.0
BYD1_k127_10669897_29 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000000000000000000000000006347 215.0
BYD1_k127_10669897_3 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.305e-308 950.0
BYD1_k127_10669897_30 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000004281 200.0
BYD1_k127_10669897_31 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000007013 223.0
BYD1_k127_10669897_32 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000003973 192.0
BYD1_k127_10669897_33 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K14160 - - 0.0000000000000000000000000000000000000000000000000722 194.0
BYD1_k127_10669897_34 Muconolactone delta-isomerase - - - 0.000000000000000000000000000000000000000000000003328 174.0
BYD1_k127_10669897_35 protein homotetramerization - GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005267,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015318,GO:0015672,GO:0016043,GO:0022607,GO:0022803,GO:0022838,GO:0022840,GO:0022841,GO:0022842,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0043933,GO:0044085,GO:0046873,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055085,GO:0065003,GO:0071804,GO:0071805,GO:0071840,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000008253 175.0
BYD1_k127_10669897_36 response to cobalt ion - - - 0.00000000000000000000000000000000000000000002263 168.0
BYD1_k127_10669897_37 FecR protein - - - 0.000000000000000000000000000000000000005834 155.0
BYD1_k127_10669897_38 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000000000000000001341 150.0
BYD1_k127_10669897_39 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.0000000000000000000000000000000000005345 141.0
BYD1_k127_10669897_4 2-epimerase K16213 - 5.1.3.11 1.505e-293 912.0
BYD1_k127_10669897_40 YCII-related domain K09780 - - 0.000000000000000000000000000000000000747 150.0
BYD1_k127_10669897_41 Histidine kinase-like ATPase domain - - - 0.00000000000000000000000000000000002473 144.0
BYD1_k127_10669897_42 Nucleotidyltransferase domain - - - 0.0000000000000000000000000000005571 124.0
BYD1_k127_10669897_43 antisigma factor binding K04749 - - 0.00000000000000000000000000001048 121.0
BYD1_k127_10669897_44 Domain of unknown function (DUF1330) - - - 0.00000000000000000000002306 105.0
BYD1_k127_10669897_45 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000000001962 104.0
BYD1_k127_10669897_46 antisigma factor binding K04749 - - 0.000000000000000000003323 100.0
BYD1_k127_10669897_47 HEPN domain - - - 0.000004121 55.0
BYD1_k127_10669897_5 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01576,K01652 - 2.2.1.6,4.1.1.7 6.118e-245 771.0
BYD1_k127_10669897_6 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 7.32e-235 731.0
BYD1_k127_10669897_7 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009031 517.0
BYD1_k127_10669897_8 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 516.0
BYD1_k127_10669897_9 ThiJ/PfpI family-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 474.0
BYD1_k127_1084284_0 Transport of potassium into the cell K03549 - - 3.347e-274 859.0
BYD1_k127_1084284_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 1.191e-261 813.0
BYD1_k127_1084284_10 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 333.0
BYD1_k127_1084284_11 anthranilate K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 328.0
BYD1_k127_1084284_12 Belongs to the RNA methyltransferase TrmD family K00554 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 311.0
BYD1_k127_1084284_13 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 316.0
BYD1_k127_1084284_14 Nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 304.0
BYD1_k127_1084284_15 Acetolactate synthase small K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000973 286.0
BYD1_k127_1084284_16 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000861 232.0
BYD1_k127_1084284_17 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000000000000000000000000000000000000003406 222.0
BYD1_k127_1084284_18 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000000000000751 214.0
BYD1_k127_1084284_19 - - - - 0.000000000000000000000000000000000000000000000000000000000001039 228.0
BYD1_k127_1084284_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 4.113e-244 764.0
BYD1_k127_1084284_20 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000000000000000002925 217.0
BYD1_k127_1084284_21 ANTAR - - - 0.00000000000000000000000000000000000000000000000000000000002104 213.0
BYD1_k127_1084284_22 Outer membrane protein (Porin) - - - 0.0000000000000000000000000000000000000000000000000000003245 211.0
BYD1_k127_1084284_23 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000000005159 186.0
BYD1_k127_1084284_24 Diguanylate cyclase K21023 - 2.7.7.65 0.00000000000000000000000000000000000000000007315 177.0
BYD1_k127_1084284_25 Thioredoxin-like K07152 - - 0.00000000000000000000000000000000000005102 158.0
BYD1_k127_1084284_26 - - - - 0.00000000000000000000000000000000006264 139.0
BYD1_k127_1084284_27 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000000000000204 133.0
BYD1_k127_1084284_28 TIGRFAM nucleotidyltransferase substrate binding protein, HI0074 family - - - 0.0000000000000000000000000000002405 132.0
BYD1_k127_1084284_29 Predicted membrane protein (DUF2069) - - - 0.0000000000000000000000000000004865 125.0
BYD1_k127_1084284_3 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 1.556e-203 643.0
BYD1_k127_1084284_31 nucleotidyltransferase activity - - - 0.0000003711 57.0
BYD1_k127_1084284_32 - - - - 0.00001138 54.0
BYD1_k127_1084284_33 Nucleotidyltransferase domain - - - 0.00001409 51.0
BYD1_k127_1084284_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 1.758e-199 624.0
BYD1_k127_1084284_5 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 540.0
BYD1_k127_1084284_6 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 415.0
BYD1_k127_1084284_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007116 381.0
BYD1_k127_1084284_8 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007078 377.0
BYD1_k127_1084284_9 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 362.0
BYD1_k127_10944095_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 452.0
BYD1_k127_10944095_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002838 318.0
BYD1_k127_10944095_2 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000001555 249.0
BYD1_k127_109689_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 1.496e-289 895.0
BYD1_k127_109689_1 histidine kinase A domain protein - - - 1.501e-252 809.0
BYD1_k127_109689_2 Haemolysin secretion/activation protein ShlB/FhaC/HecB - GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008976 422.0
BYD1_k127_109689_3 Two component transcriptional regulator, AraC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 351.0
BYD1_k127_109689_4 haemagglutination activity domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 326.0
BYD1_k127_109689_5 - - - - 0.000000000000000000000000000000000000000237 153.0
BYD1_k127_109689_7 filamentous hemagglutinin family N-terminal domain - - - 0.00000003786 68.0
BYD1_k127_11110781_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 1.41e-311 963.0
BYD1_k127_11110781_1 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 2.905e-277 866.0
BYD1_k127_11110781_10 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 577.0
BYD1_k127_11110781_11 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 507.0
BYD1_k127_11110781_12 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004448 506.0
BYD1_k127_11110781_13 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 497.0
BYD1_k127_11110781_14 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003591 486.0
BYD1_k127_11110781_15 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 485.0
BYD1_k127_11110781_16 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 464.0
BYD1_k127_11110781_17 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 421.0
BYD1_k127_11110781_18 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006809 416.0
BYD1_k127_11110781_19 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 409.0
BYD1_k127_11110781_2 Cytochrome c554 and c-prime - - - 1.505e-275 860.0
BYD1_k127_11110781_20 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17229 - 1.8.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 411.0
BYD1_k127_11110781_21 COG0491 Zn-dependent hydrolases, including glyoxylases K01069 GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 348.0
BYD1_k127_11110781_22 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 331.0
BYD1_k127_11110781_23 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 315.0
BYD1_k127_11110781_24 Protein of unknown function (DUF3050) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 312.0
BYD1_k127_11110781_25 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008636 311.0
BYD1_k127_11110781_26 Binding-protein-dependent transport system inner membrane component K05773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 314.0
BYD1_k127_11110781_27 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 306.0
BYD1_k127_11110781_28 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004552 315.0
BYD1_k127_11110781_29 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 312.0
BYD1_k127_11110781_3 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.759e-250 788.0
BYD1_k127_11110781_30 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008871 302.0
BYD1_k127_11110781_31 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005211 287.0
BYD1_k127_11110781_32 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000007917 252.0
BYD1_k127_11110781_33 shape-determining protein K03571 - - 0.000000000000000000000000000000000000000000000000000000000000000001311 237.0
BYD1_k127_11110781_34 N-terminal half of MaoC dehydratase K17865 - 4.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000001999 231.0
BYD1_k127_11110781_35 NlpC/P60 family - - - 0.0000000000000000000000000000000000000000000000000000001116 200.0
BYD1_k127_11110781_36 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 0.0000000000000000000000000000000000000000000000001288 181.0
BYD1_k127_11110781_37 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000005169 164.0
BYD1_k127_11110781_38 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000000000000000001266 164.0
BYD1_k127_11110781_39 - - - - 0.00000000000000000000000000000000000000103 156.0
BYD1_k127_11110781_4 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 3.835e-239 748.0
BYD1_k127_11110781_40 integral membrane protein K02221 - - 0.00000000000000000000000000000000000006394 158.0
BYD1_k127_11110781_41 AsmA family - - - 0.000000000000000000000000000000000001701 154.0
BYD1_k127_11110781_42 Bacterial protein of unknown function (DUF883) - - - 0.00000000000000000000000000000000006097 136.0
BYD1_k127_11110781_43 Belongs to the UPF0250 family K09158 - - 0.000000000000000000000000000000000156 133.0
BYD1_k127_11110781_44 DUF167 K09131 - - 0.00000000000000000000000000004053 119.0
BYD1_k127_11110781_45 Glu-tRNAGln amidotransferase C subunit - - - 0.000000000000000000000000007753 125.0
BYD1_k127_11110781_46 - - - - 0.0000000000000000000000000091 117.0
BYD1_k127_11110781_47 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000002025 118.0
BYD1_k127_11110781_48 - - - - 0.00000000000000000000000159 106.0
BYD1_k127_11110781_49 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0000000000000000008779 90.0
BYD1_k127_11110781_5 Belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 2.659e-238 745.0
BYD1_k127_11110781_50 YqjK-like protein - - - 0.0000000000003039 74.0
BYD1_k127_11110781_51 DNAJ heat shock N-terminal domain-containing protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 - 0.00000179 59.0
BYD1_k127_11110781_52 general secretion pathway protein - - - 0.000006437 49.0
BYD1_k127_11110781_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 5.716e-224 702.0
BYD1_k127_11110781_7 Rod shape-determining protein MreB K03569 - - 4.772e-208 648.0
BYD1_k127_11110781_8 twitching motility protein K02670 - - 2.524e-203 636.0
BYD1_k127_11110781_9 twitching motility protein K02669 - - 6.513e-194 608.0
BYD1_k127_11134379_0 Belongs to the glutamine synthetase family K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 360.0
BYD1_k127_11134379_1 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000009874 226.0
BYD1_k127_11134379_2 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000001256 124.0
BYD1_k127_11134379_3 LysR substrate binding domain - - - 0.0005221 45.0
BYD1_k127_11138506_0 Belongs to the short-chain dehydrogenases reductases (SDR) family K00019 GO:0000003,GO:0000166,GO:0001568,GO:0001676,GO:0001944,GO:0003674,GO:0003824,GO:0004888,GO:0004930,GO:0004953,GO:0004954,GO:0004955,GO:0004957,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006690,GO:0006692,GO:0006693,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007186,GO:0007275,GO:0007276,GO:0007292,GO:0007565,GO:0007567,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009653,GO:0009719,GO:0009987,GO:0010033,GO:0016053,GO:0016404,GO:0016491,GO:0016614,GO:0016616,GO:0019372,GO:0019752,GO:0019953,GO:0022414,GO:0023052,GO:0030728,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0033559,GO:0035239,GO:0035295,GO:0036094,GO:0038023,GO:0042221,GO:0042759,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045786,GO:0046394,GO:0046456,GO:0046983,GO:0048037,GO:0048514,GO:0048519,GO:0048523,GO:0048609,GO:0048731,GO:0048844,GO:0048856,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051287,GO:0051704,GO:0051716,GO:0051726,GO:0055114,GO:0060089,GO:0060840,GO:0065007,GO:0070013,GO:0070403,GO:0070493,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0072330,GO:0072358,GO:0072359,GO:0097070,GO:0097159,GO:1901265,GO:1901363,GO:1901568,GO:1901570,GO:1901576,GO:2001300,GO:2001301 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 390.0
BYD1_k127_11138506_1 two component, sigma54 specific, transcriptional regulator, Fis family K07714,K07715 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 384.0
BYD1_k127_11138506_2 Histidine kinase K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001329 272.0
BYD1_k127_11138506_3 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000000000000002161 143.0
BYD1_k127_11138506_4 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.0000000000000000000000000000000005963 141.0
BYD1_k127_11154973_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003835 370.0
BYD1_k127_11154973_1 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002881 278.0
BYD1_k127_11154973_2 CobQ/CobB/MinD/ParA nucleotide binding domain K08252,K16692 - 2.7.10.1 0.000000000000000000000000000000000000000000000000000000000000000000000000003632 284.0
BYD1_k127_11154973_3 polysaccharide export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000001704 247.0
BYD1_k127_11154973_4 PFAM response regulator receiver - - - 0.000000000001297 77.0
BYD1_k127_11154973_5 Polysaccharide biosynthesis protein K03328 - - 0.00000293 53.0
BYD1_k127_11170710_0 FeS assembly protein SufB K09014 - - 2.829e-282 871.0
BYD1_k127_11170710_1 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 604.0
BYD1_k127_11170710_2 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 492.0
BYD1_k127_11170710_3 FeS assembly ATPase SufC K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 403.0
BYD1_k127_11170710_4 Ferritin-like domain K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000007362 233.0
BYD1_k127_11170710_5 Transcriptional regulator - - - 0.000000000000000000000000000000000000273 153.0
BYD1_k127_11170710_6 SURF1-like protein K14998 - - 0.0000000000000000000000000000000002422 141.0
BYD1_k127_11170710_7 Protein of unknown function (DUF2909) - - - 0.0000002181 55.0
BYD1_k127_11224075_0 TIGRFAM filamentous haemagglutinin family outer membrane protein - - - 6.439e-270 923.0
BYD1_k127_11224075_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.049e-244 764.0
BYD1_k127_11224075_10 HemX, putative uroporphyrinogen-III C-methyltransferase K02496 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006201 328.0
BYD1_k127_11224075_11 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 301.0
BYD1_k127_11224075_12 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002064 284.0
BYD1_k127_11224075_13 TIGRFAM filamentous hemagglutinin family N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000006982 250.0
BYD1_k127_11224075_14 response regulator - - - 0.000000000000000000000000000000000000000000000000000000194 206.0
BYD1_k127_11224075_15 Bacterial regulatory protein, Fis family K03557 - - 0.000000000000000000000000003709 111.0
BYD1_k127_11224075_16 domain, Protein - - - 0.0000000000007624 85.0
BYD1_k127_11224075_17 Tfp pilus assembly protein FimV - - - 0.0000001505 64.0
BYD1_k127_11224075_2 Belongs to the GARS family K01945 - 6.3.4.13 1.962e-211 667.0
BYD1_k127_11224075_3 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 613.0
BYD1_k127_11224075_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 540.0
BYD1_k127_11224075_5 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 512.0
BYD1_k127_11224075_6 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007893 478.0
BYD1_k127_11224075_7 Haemolysin secretion/activation protein ShlB/FhaC/HecB - GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006825 403.0
BYD1_k127_11224075_8 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007375 398.0
BYD1_k127_11224075_9 enzyme of heme biosynthesis K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 352.0
BYD1_k127_11232010_0 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0 1105.0
BYD1_k127_11232010_1 Abc transporter K11004 - - 0.0 1024.0
BYD1_k127_11232010_10 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002864 423.0
BYD1_k127_11232010_11 Type IV Pilus-assembly protein W K02672 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004614 379.0
BYD1_k127_11232010_12 COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 352.0
BYD1_k127_11232010_13 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003652 350.0
BYD1_k127_11232010_14 uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 300.0
BYD1_k127_11232010_15 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009988 316.0
BYD1_k127_11232010_16 Peptidase M22 glycoprotease K14742 - - 0.00000000000000000000000000000000000000000000000000000004637 207.0
BYD1_k127_11232010_17 type IV pilus modification protein PilV - - - 0.000000000000000000000000000000000000000000000000000001198 201.0
BYD1_k127_11232010_18 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789,K14742 - 2.3.1.128 0.000000000000000000000000000000000000000000000000008089 186.0
BYD1_k127_11232010_19 response regulator - - - 0.000000000000000000000000000000000000000000000001415 184.0
BYD1_k127_11232010_2 Peptidase family M41 K03798 - - 0.0 1017.0
BYD1_k127_11232010_20 response regulator - - - 0.00000000000000000000000000000000000000000003924 168.0
BYD1_k127_11232010_21 COG0834 ABC-type amino acid transport signal transduction systems, periplasmic component domain K07675 - 2.7.13.3 0.00000000000000000000000000000000000001966 164.0
BYD1_k127_11232010_22 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000002564 139.0
BYD1_k127_11232010_24 Metal dependent phosphohydrolases with conserved 'HD' motif. K03698 - - 0.000000000000000000000000001019 121.0
BYD1_k127_11232010_25 COG4968 Tfp pilus assembly protein PilE K02655 - - 0.00000000000000000000001289 105.0
BYD1_k127_11232010_26 calcium- and calmodulin-responsive adenylate cyclase activity K07004 - - 0.00000000000000000006619 108.0
BYD1_k127_11232010_27 PFAM NifQ family protein K15790 - - 0.000000000000000001959 91.0
BYD1_k127_11232010_28 Pilus assembly protein PilX - - - 0.000000000000003092 89.0
BYD1_k127_11232010_29 type 4 fimbrial pilin related transmembrane protein K08084 - - 0.000000000000007998 80.0
BYD1_k127_11232010_3 Neisseria PilC beta-propeller domain K02674 - - 2.234e-293 941.0
BYD1_k127_11232010_30 Two component signalling adaptor domain K03408 - - 0.000000000002001 74.0
BYD1_k127_11232010_32 Matrixin - - - 0.0001404 53.0
BYD1_k127_11232010_33 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0006343 43.0
BYD1_k127_11232010_4 Pfam:HxxPF_rpt - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 569.0
BYD1_k127_11232010_5 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002668 512.0
BYD1_k127_11232010_6 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009237 519.0
BYD1_k127_11232010_7 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 431.0
BYD1_k127_11232010_8 Histidine kinase K20975 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 441.0
BYD1_k127_11232010_9 Histidine kinase K20975 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 424.0
BYD1_k127_11258814_0 Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1 K05939 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0008779,GO:0008922,GO:0009058,GO:0009987,GO:0015645,GO:0016020,GO:0016021,GO:0016740,GO:0016746,GO:0016747,GO:0016874,GO:0016877,GO:0016878,GO:0019637,GO:0019752,GO:0031224,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044425,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.3.1.40,6.2.1.20 0.0 1109.0
BYD1_k127_11258814_1 Major facilitator Superfamily K05939 - 2.3.1.40,6.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 398.0
BYD1_k127_11258814_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001832 266.0
BYD1_k127_11259130_0 Cysteine-rich domain - - - 5.016e-275 854.0
BYD1_k127_11259130_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.317e-233 755.0
BYD1_k127_11259130_10 transcriptional regulator, MerR - - - 0.0000000000000000000000000000000000000000000000813 172.0
BYD1_k127_11259130_11 chain release factor K15034 - - 0.00000000000000000000000000000000000000000004059 165.0
BYD1_k127_11259130_12 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000006222 161.0
BYD1_k127_11259130_13 Glycine zipper 2TM domain - - - 0.000000000000000000000000000000001397 145.0
BYD1_k127_11259130_14 - - - - 0.000000000000000000000000004096 115.0
BYD1_k127_11259130_15 - - - - 0.00000000000000000000007676 104.0
BYD1_k127_11259130_16 Iron-sulphur cluster biosynthesis K13628 - - 0.000000000000000001322 93.0
BYD1_k127_11259130_2 AAA domain K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 604.0
BYD1_k127_11259130_3 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 490.0
BYD1_k127_11259130_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 388.0
BYD1_k127_11259130_5 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 352.0
BYD1_k127_11259130_6 Nitrate reductase gamma subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 326.0
BYD1_k127_11259130_7 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 331.0
BYD1_k127_11259130_8 DsrC like protein K11179 - - 0.00000000000000000000000000000000000000000000000000007751 188.0
BYD1_k127_11259130_9 Glycine-zipper domain - - - 0.00000000000000000000000000000000000000000000002501 175.0
BYD1_k127_11426353_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 6.874e-252 785.0
BYD1_k127_11426353_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 1.416e-222 710.0
BYD1_k127_11426353_10 Alpha beta hydrolase K00433 - 1.11.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 383.0
BYD1_k127_11426353_11 PFAM Metal-dependent hydrolase HDOD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008341 345.0
BYD1_k127_11426353_12 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 327.0
BYD1_k127_11426353_13 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 319.0
BYD1_k127_11426353_14 NAD(P)H-binding K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000808 314.0
BYD1_k127_11426353_15 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002045 293.0
BYD1_k127_11426353_16 haemagglutination activity domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001477 268.0
BYD1_k127_11426353_17 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001629 250.0
BYD1_k127_11426353_18 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002239 254.0
BYD1_k127_11426353_19 Caspase domain - - - 0.000000000000000000000000000000000000000000000000000000000001988 229.0
BYD1_k127_11426353_2 Acetyl-coenzyme A transporter 1 K08218 - - 1.186e-208 655.0
BYD1_k127_11426353_20 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000004885 199.0
BYD1_k127_11426353_21 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000008494 217.0
BYD1_k127_11426353_22 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.000000000000000000000000000000000000000000000001684 180.0
BYD1_k127_11426353_23 membrane - - - 0.0000000000000000000000000000000000000000004473 161.0
BYD1_k127_11426353_24 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000000154 145.0
BYD1_k127_11426353_25 - - - - 0.00000000000000000000000000000007385 136.0
BYD1_k127_11426353_26 OmpA family - - - 0.00000000000000000000000000557 119.0
BYD1_k127_11426353_27 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000002066 82.0
BYD1_k127_11426353_3 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 565.0
BYD1_k127_11426353_30 Domain of unknown function (DUF1840) - - - 0.0000000000002708 79.0
BYD1_k127_11426353_32 - - - - 0.0000000001033 72.0
BYD1_k127_11426353_33 Autotransporter beta-domain - - - 0.0000000006297 71.0
BYD1_k127_11426353_35 - - - - 0.0000007346 55.0
BYD1_k127_11426353_36 peptidase C14 caspase catalytic subunit p20 - - - 0.000001059 61.0
BYD1_k127_11426353_4 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities K14155 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 531.0
BYD1_k127_11426353_5 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 537.0
BYD1_k127_11426353_6 Domain of unknown function (DUF4384) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 460.0
BYD1_k127_11426353_7 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 452.0
BYD1_k127_11426353_8 CHASE2 K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009729 461.0
BYD1_k127_11426353_9 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 441.0
BYD1_k127_11732966_0 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008151 365.0
BYD1_k127_11732966_1 Cytochrome C1 family K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 325.0
BYD1_k127_11732966_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003315 269.0
BYD1_k127_11732966_3 Crp-like helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000004729 214.0
BYD1_k127_11815396_0 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0 1371.0
BYD1_k127_11815396_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1181.0
BYD1_k127_11815396_10 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007806 287.0
BYD1_k127_11815396_11 FKBP-type peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000004357 225.0
BYD1_k127_11815396_12 Transcriptional regulator K13643 - - 0.000000000000000000000000000000000000000000000000000000000000009473 219.0
BYD1_k127_11815396_13 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000006442 205.0
BYD1_k127_11815396_14 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000002858 121.0
BYD1_k127_11815396_15 bacterial OsmY and nodulation domain - - - 0.00000000000000000000000000002275 121.0
BYD1_k127_11815396_16 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.000000000000000000000000002918 124.0
BYD1_k127_11815396_17 Glycine zipper 2TM domain K04062 - - 0.00000000000000006615 83.0
BYD1_k127_11815396_2 Dehydrogenase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004639 611.0
BYD1_k127_11815396_3 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 575.0
BYD1_k127_11815396_4 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 514.0
BYD1_k127_11815396_5 AFG1-like ATPase K06916 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 461.0
BYD1_k127_11815396_6 alcohol dehydrogenase K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 454.0
BYD1_k127_11815396_7 Belongs to the inositol monophosphatase superfamily K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 419.0
BYD1_k127_11815396_8 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 397.0
BYD1_k127_11815396_9 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006776 288.0
BYD1_k127_11852017_0 Mu transposase, C-terminal K07497 - - 2.532e-298 940.0
BYD1_k127_11852017_1 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K12276 - - 9.208e-282 874.0
BYD1_k127_11852017_10 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 341.0
BYD1_k127_11852017_11 Uncharacterised protein conserved in bacteria (DUF2326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 361.0
BYD1_k127_11852017_12 Bacterial TniB protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 347.0
BYD1_k127_11852017_13 peptidase, M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 337.0
BYD1_k127_11852017_14 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005639 327.0
BYD1_k127_11852017_15 Thymidylate synthase K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 319.0
BYD1_k127_11852017_16 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006039 312.0
BYD1_k127_11852017_17 AAA domain K02450,K12283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006589 315.0
BYD1_k127_11852017_18 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 327.0
BYD1_k127_11852017_19 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001439 281.0
BYD1_k127_11852017_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 9.116e-208 659.0
BYD1_k127_11852017_20 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000133 276.0
BYD1_k127_11852017_21 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009116 263.0
BYD1_k127_11852017_22 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000004482 271.0
BYD1_k127_11852017_23 Pilus assembly protein K12279 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004051 258.0
BYD1_k127_11852017_24 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002002 239.0
BYD1_k127_11852017_25 uracil-dna glycosylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002264 239.0
BYD1_k127_11852017_26 Chagasin family peptidase inhibitor I42 - - - 0.000000000000000000000000000000000000000000000000000000000000003579 231.0
BYD1_k127_11852017_27 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000631 219.0
BYD1_k127_11852017_28 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.000000000000000000000000000000000000000000000000000000000000108 216.0
BYD1_k127_11852017_29 Concanavalin A-like lectin/glucanases superfamily K12287 - - 0.000000000000000000000000000000000000000000000000000000000006544 239.0
BYD1_k127_11852017_3 Type II secretion system (T2SS), protein F K02455,K12278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003199 559.0
BYD1_k127_11852017_30 PFAM MaoC domain protein dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000002399 206.0
BYD1_k127_11852017_31 Belongs to the RNase T2 family K01166 - 3.1.27.1 0.0000000000000000000000000000000000000000000000000000000005822 224.0
BYD1_k127_11852017_32 Prokaryotic N-terminal methylation motif K12285 - - 0.000000000000000000000000000000000000000000000000000000001901 210.0
BYD1_k127_11852017_33 hydroxymethylbilane synthase activity - - - 0.000000000000000000000000000000000000000000000000000003549 202.0
BYD1_k127_11852017_34 transcriptional - - - 0.000000000000000000000000000000000000000000000000002547 184.0
BYD1_k127_11852017_35 TniQ - - - 0.000000000000000000000000000000000000000000000000004068 199.0
BYD1_k127_11852017_36 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000001606 173.0
BYD1_k127_11852017_37 - - - - 0.000000000000000000000000000000000000002692 151.0
BYD1_k127_11852017_38 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000001278 146.0
BYD1_k127_11852017_39 Bacterial SH3 domain - - - 0.0000000000000000000000000000000000002929 144.0
BYD1_k127_11852017_4 Secretin N-terminal domain K02453,K12282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 526.0
BYD1_k127_11852017_40 cellulose binding - - - 0.000000000000000000000000000000000004815 160.0
BYD1_k127_11852017_41 Tetratricopeptide repeat K12284 - - 0.000000000000000000000000000000000005665 153.0
BYD1_k127_11852017_42 GYD domain - - - 0.000000000000000000000000000000000006597 138.0
BYD1_k127_11852017_43 Glutaredoxin K03676 - - 0.00000000000000000000000000000000001967 136.0
BYD1_k127_11852017_44 Helix-turn-helix domain protein - - - 0.00000000000000000000000000000000006815 138.0
BYD1_k127_11852017_45 - - - - 0.000000000000000000000000000002846 133.0
BYD1_k127_11852017_46 - - - - 0.000000000000000000000000002763 125.0
BYD1_k127_11852017_47 PFAM Fimbrial assembly family protein - - - 0.000000000000000000000000004772 120.0
BYD1_k127_11852017_48 - - - - 0.0000000000000000000000001109 122.0
BYD1_k127_11852017_49 Papain family cysteine protease - - - 0.0000000000000000000000007804 116.0
BYD1_k127_11852017_5 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 463.0
BYD1_k127_11852017_50 type IV pilus modification protein PilV K10927 - - 0.0000000000000000000003027 103.0
BYD1_k127_11852017_51 carbon utilization K12280 - - 0.000000000000000000001573 103.0
BYD1_k127_11852017_52 Pilus assembly protein PilX K12286 - - 0.000000000000000000002399 99.0
BYD1_k127_11852017_53 TRANSCRIPTIONal - - - 0.000000000000000000843 90.0
BYD1_k127_11852017_54 Protein of Unknown function (DUF2784) - - - 0.00000000000000001074 84.0
BYD1_k127_11852017_55 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000007144 72.0
BYD1_k127_11852017_56 PFAM integrase family protein - - - 0.00000000000007407 75.0
BYD1_k127_11852017_58 Transcriptional regulator - - - 0.000000000001429 72.0
BYD1_k127_11852017_59 - - - - 0.000000000004755 69.0
BYD1_k127_11852017_6 PFAM Deoxyribonuclease II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 458.0
BYD1_k127_11852017_61 Pfam:N_methyl_2 K10924 - - 0.0000000001452 67.0
BYD1_k127_11852017_62 Protein of Unknown function (DUF2784) - - - 0.000000006279 59.0
BYD1_k127_11852017_63 Tfp pilus assembly protein FimT K10926 - - 0.0000004328 61.0
BYD1_k127_11852017_64 - - - - 0.0000008307 55.0
BYD1_k127_11852017_65 - - - - 0.00004094 54.0
BYD1_k127_11852017_66 Prokaryotic N-terminal methylation motif K10924 - - 0.00005419 53.0
BYD1_k127_11852017_68 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0001341 45.0
BYD1_k127_11852017_7 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004735 425.0
BYD1_k127_11852017_71 - K12281 - - 0.0006611 48.0
BYD1_k127_11852017_8 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 414.0
BYD1_k127_11852017_9 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008333 389.0
BYD1_k127_11973862_0 membrane-associated Zn-dependent proteases 1 K16922 - - 2.172e-281 881.0
BYD1_k127_11973862_1 ABC transporter transmembrane region K12541 - - 3.268e-214 696.0
BYD1_k127_11973862_10 Belongs to the GcvT family K06980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 303.0
BYD1_k127_11973862_11 Transport and Golgi organisation 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006752 289.0
BYD1_k127_11973862_12 DNA polymerase III K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008242 284.0
BYD1_k127_11973862_13 Outer membrane efflux protein K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001516 287.0
BYD1_k127_11973862_14 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000154 274.0
BYD1_k127_11973862_15 ankyrin repeat K06867 - - 0.00000000000000000000000000000000000000006287 160.0
BYD1_k127_11973862_16 PFAM Hemolysin-type calcium-binding - - - 0.000000000000000218 90.0
BYD1_k127_11973862_17 cellulase activity - - - 0.00000000002251 72.0
BYD1_k127_11973862_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 614.0
BYD1_k127_11973862_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K12542 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 509.0
BYD1_k127_11973862_4 Domain of unknown function (DUF4143) K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 502.0
BYD1_k127_11973862_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 496.0
BYD1_k127_11973862_6 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 430.0
BYD1_k127_11973862_7 TIGRFAM hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 349.0
BYD1_k127_11973862_8 COG1538 Outer membrane protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 347.0
BYD1_k127_11973862_9 ErfK YbiS YcfS YnhG family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008257 315.0
BYD1_k127_11988804_0 cation transport ATPase K01533 - 3.6.3.4 5e-324 1011.0
BYD1_k127_11988804_1 Cytochrome C and Quinol oxidase polypeptide I K00404 - 1.9.3.1 1.075e-281 869.0
BYD1_k127_11988804_2 pilus assembly protein tip-associated adhesin K02674 - - 1.072e-203 678.0
BYD1_k127_11988804_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 382.0
BYD1_k127_11988804_4 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 385.0
BYD1_k127_11988804_5 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000247 321.0
BYD1_k127_11988804_6 cytochrome oxidase maturation protein cbb3-type - - - 0.00000000000000003649 82.0
BYD1_k127_11988804_7 Cbb3-type cytochrome oxidase K00407 - - 0.00000000006788 66.0
BYD1_k127_11996525_0 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 534.0
BYD1_k127_11996525_1 PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000372 290.0
BYD1_k127_11996525_10 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.000000000000000000000000002634 120.0
BYD1_k127_11996525_2 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.0000000000000000000000000000000000000000000000000000000000000000000001248 248.0
BYD1_k127_11996525_3 Protein of unknown function (DUF421) - - - 0.0000000000000000000000000000000000000000000000000000000000000000003134 233.0
BYD1_k127_11996525_4 NifZ domain K02597 - - 0.0000000000000000000000000000000000000000000000000000000001957 209.0
BYD1_k127_11996525_5 protein conserved in bacteria K09781 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000001628 200.0
BYD1_k127_11996525_6 - - - - 0.0000000000000000000000000000000000000000006841 170.0
BYD1_k127_11996525_7 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000000000000000000000000000000001314 148.0
BYD1_k127_11996525_8 TIGRFAM addiction module antidote protein, HigA family K21498 - - 0.0000000000000000000000000000000001264 139.0
BYD1_k127_11996525_9 May protect the nitrogenase Fe-Mo protein from oxidative damage K02595 - - 0.00000000000000000000000000001112 122.0
BYD1_k127_12203679_0 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 4.477e-302 930.0
BYD1_k127_12203679_1 Nitrogenase component 1 type Oxidoreductase K02586 - 1.18.6.1 2.578e-291 898.0
BYD1_k127_12203679_2 The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein K02588 - 1.18.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 393.0
BYD1_k127_12203679_3 nitrogen fixation K02593 - - 0.0000000000000000000000000000002158 123.0
BYD1_k127_12203679_4 4Fe-4S binding domain - - - 0.00000003427 54.0
BYD1_k127_1330870_0 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004512 488.0
BYD1_k127_1330870_1 LPS biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 347.0
BYD1_k127_1330870_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 345.0
BYD1_k127_1330870_3 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001714 268.0
BYD1_k127_1330870_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000003393 187.0
BYD1_k127_1332275_0 Pyridine nucleotide-disulphide oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1019.0
BYD1_k127_1332275_1 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006067 601.0
BYD1_k127_1332275_2 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 460.0
BYD1_k127_1332275_3 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 336.0
BYD1_k127_1332275_4 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007269 279.0
BYD1_k127_1332275_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001215 258.0
BYD1_k127_1332275_6 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000227 237.0
BYD1_k127_1332275_7 4Fe-4S binding domain K00176 - 1.2.7.3 0.000000000000000000000000000000004274 129.0
BYD1_k127_136670_0 Tripartite ATP-independent periplasmic transporter, DctM component K11690 - - 2.416e-236 737.0
BYD1_k127_136670_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 5.082e-213 672.0
BYD1_k127_136670_10 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 439.0
BYD1_k127_136670_11 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007165 383.0
BYD1_k127_136670_12 response regulator K11712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002119 270.0
BYD1_k127_136670_13 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000005016 259.0
BYD1_k127_136670_14 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000002048 255.0
BYD1_k127_136670_15 type 4 pilus biogenesis protein K02656 - - 0.0000000000000000000000000000000000000000000000000000000000000000002387 237.0
BYD1_k127_136670_16 Tetratricopeptide repeat-like domain - - - 0.00000000000000000000000000000000000000000002025 170.0
BYD1_k127_136670_17 Domain of unknown function (DUF4115) K15539 - - 0.0000000000000000000000000000000000000000143 166.0
BYD1_k127_136670_18 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000001602 147.0
BYD1_k127_136670_19 Unextendable partial coding region - - - 0.0000000004406 60.0
BYD1_k127_136670_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 3.874e-209 663.0
BYD1_k127_136670_3 Signal transduction histidine kinase K11711 - 2.7.13.3 2.989e-205 660.0
BYD1_k127_136670_4 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 6.122e-198 625.0
BYD1_k127_136670_5 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 588.0
BYD1_k127_136670_6 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496 583.0
BYD1_k127_136670_7 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 568.0
BYD1_k127_136670_8 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 535.0
BYD1_k127_136670_9 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 505.0
BYD1_k127_1372388_0 Multicopper oxidase - - - 0.0 1577.0
BYD1_k127_1372388_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 4.807e-240 756.0
BYD1_k127_1372388_10 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 350.0
BYD1_k127_1372388_11 AAA domain K02450,K12283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 334.0
BYD1_k127_1372388_12 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 321.0
BYD1_k127_1372388_13 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 289.0
BYD1_k127_1372388_14 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000006461 259.0
BYD1_k127_1372388_15 response regulator K14979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007252 256.0
BYD1_k127_1372388_16 prepilin-type N-terminal cleavage methylation K02456 - - 0.0000000000000000000000000000000000000000000000000000000005592 227.0
BYD1_k127_1372388_17 Type II secretion system (T2SS), protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000002576 204.0
BYD1_k127_1372388_18 General secretion pathway protein F K02455,K02653 - - 0.0000000000000000000000000000000000000000000000002834 191.0
BYD1_k127_1372388_19 Type II secretion system protein G K02456 - - 0.0000000000000000000000000000000000000000002498 162.0
BYD1_k127_1372388_2 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 1.505e-239 752.0
BYD1_k127_1372388_20 Transglycosylase SLT domain K01185 - 3.2.1.17 0.0000000000000000000000000000000000000000004589 166.0
BYD1_k127_1372388_21 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000002498 166.0
BYD1_k127_1372388_22 Type II secretory pathway pseudopilin - - - 0.0000000000000000000000000000000000596 143.0
BYD1_k127_1372388_23 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000001095 143.0
BYD1_k127_1372388_24 carbon utilization - - - 0.000000000000000000002415 105.0
BYD1_k127_1372388_25 - - - - 0.00000000000000000001348 105.0
BYD1_k127_1372388_26 - - - - 0.0000000000000000003289 101.0
BYD1_k127_1372388_27 - - - - 0.0000000000000001138 91.0
BYD1_k127_1372388_28 Type II secretion system protein B - - - 0.0000000001646 71.0
BYD1_k127_1372388_3 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 1.083e-218 710.0
BYD1_k127_1372388_4 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051 514.0
BYD1_k127_1372388_5 Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides K00364 - 1.7.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006649 507.0
BYD1_k127_1372388_6 Cohesin domain K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008881 487.0
BYD1_k127_1372388_7 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 381.0
BYD1_k127_1372388_8 Signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 378.0
BYD1_k127_1372388_9 ABC transporter substrate binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003487 357.0
BYD1_k127_1409424_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1039.0
BYD1_k127_1409424_1 Exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 2.426e-205 649.0
BYD1_k127_1409424_2 ABC transporter permease K02066 - - 0.0000000000002038 76.0
BYD1_k127_1411435_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 1.159e-198 642.0
BYD1_k127_1411435_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003542 382.0
BYD1_k127_1411435_2 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004289 351.0
BYD1_k127_1411435_3 response to abiotic stimulus K01971,K03086,K06867,K06886 GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0006996,GO:0007010,GO:0007015,GO:0008092,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044877,GO:0046983,GO:0051015,GO:0051259,GO:0065003,GO:0071840,GO:0097435 6.5.1.1 0.00000000000000000000000000000000000003413 148.0
BYD1_k127_1411435_4 Methyltransferase domain - - - 0.000000000000000002977 89.0
BYD1_k127_1422472_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 4.522e-266 839.0
BYD1_k127_1422472_1 Methyl-accepting chemotaxis protein K03406 - - 6.642e-257 804.0
BYD1_k127_1422472_10 COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K15012 - - 0.000000000000000000000000000000000000000000000000000000000004015 229.0
BYD1_k127_1422472_11 - - - - 0.0000000000006127 77.0
BYD1_k127_1422472_12 - - - - 0.0003225 49.0
BYD1_k127_1422472_2 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 450.0
BYD1_k127_1422472_3 Nitrate TMAO reductase, membrane-bound tetraheme cytochrome c subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 366.0
BYD1_k127_1422472_4 His Kinase A (phosphoacceptor) domain K15011 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 338.0
BYD1_k127_1422472_5 Cytochrome b/b6/petB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 308.0
BYD1_k127_1422472_6 Ethylbenzene dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 316.0
BYD1_k127_1422472_7 Vitamin k epoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004666 271.0
BYD1_k127_1422472_8 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008573 258.0
BYD1_k127_1422472_9 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001825 271.0
BYD1_k127_1449938_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 5.528e-303 935.0
BYD1_k127_1449938_1 Domain of unknown function (DUF3369) - - - 0.00000000000000000000000000000000000000000000000003981 195.0
BYD1_k127_1449938_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000000000004505 180.0
BYD1_k127_146981_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1401.0
BYD1_k127_146981_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1277.0
BYD1_k127_146981_10 Phosphoglucomutase K15778 - 5.4.2.2,5.4.2.8 4.048e-214 687.0
BYD1_k127_146981_11 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 2.206e-197 621.0
BYD1_k127_146981_12 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 6.183e-196 621.0
BYD1_k127_146981_13 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 583.0
BYD1_k127_146981_14 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 533.0
BYD1_k127_146981_15 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007636 436.0
BYD1_k127_146981_16 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008161 428.0
BYD1_k127_146981_17 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 444.0
BYD1_k127_146981_18 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 403.0
BYD1_k127_146981_19 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 392.0
BYD1_k127_146981_2 response regulator receiver - - - 0.0 1260.0
BYD1_k127_146981_20 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 398.0
BYD1_k127_146981_21 alpha/beta hydrolase fold K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 392.0
BYD1_k127_146981_22 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 378.0
BYD1_k127_146981_23 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 363.0
BYD1_k127_146981_24 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 330.0
BYD1_k127_146981_25 ABC transporter substrate binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818 351.0
BYD1_k127_146981_26 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 310.0
BYD1_k127_146981_27 cytochrome - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 287.0
BYD1_k127_146981_28 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004325 305.0
BYD1_k127_146981_29 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002574 282.0
BYD1_k127_146981_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 4.433e-295 917.0
BYD1_k127_146981_30 ABC-type sugar transport system, periplasmic component K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004028 288.0
BYD1_k127_146981_31 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002308 263.0
BYD1_k127_146981_32 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006606 255.0
BYD1_k127_146981_33 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001766 244.0
BYD1_k127_146981_34 AMP-binding enzyme K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000001389 241.0
BYD1_k127_146981_35 NUDIX domain - - - 0.000000000000000000000000000000000000000000000000000000000000000004265 231.0
BYD1_k127_146981_36 Domain of unknown function (DUF4272) - - - 0.00000000000000000000000000000000000000000000000000000000000000001149 231.0
BYD1_k127_146981_37 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000004782 233.0
BYD1_k127_146981_38 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000002209 239.0
BYD1_k127_146981_39 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000008659 220.0
BYD1_k127_146981_4 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 7.399e-273 846.0
BYD1_k127_146981_40 Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins - - - 0.00000000000000000000000000000000000000000000000000000000000253 216.0
BYD1_k127_146981_41 (sprot CYCP_CHRVI). CYTOCHROME C IS THE MOST WIDELY OCCURRING BACTERIAL C-TYPE CYTOCHROME. CYTOCHROMES C ARE HIGH-SPIN PROTEINS AND THE HEME HAS NO SIXTH LIGAND. THEIR EXACT FUNCTION IS NOT KNOWN - - - 0.0000000000000000000000000000000000000000000000000000001148 199.0
BYD1_k127_146981_42 - - - - 0.00000000000000000000000000000000000000000000000000005136 206.0
BYD1_k127_146981_43 - - - - 0.00000000000000000000000000000000000000000000000000009068 199.0
BYD1_k127_146981_44 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000075 188.0
BYD1_k127_146981_45 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000261 191.0
BYD1_k127_146981_46 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000002666 184.0
BYD1_k127_146981_47 - - - - 0.0000000000000000000000000000000000000000000000001608 187.0
BYD1_k127_146981_48 Protein of unknown function DUF86 - - - 0.0000000000000000000000000000000000000000000000006489 180.0
BYD1_k127_146981_49 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000000000000000000114 164.0
BYD1_k127_146981_5 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.021e-261 809.0
BYD1_k127_146981_50 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000004763 154.0
BYD1_k127_146981_51 SnoaL-like domain - - - 0.000000000000000000000000000000000000002833 150.0
BYD1_k127_146981_52 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.000000000000000000000000000000000000006071 151.0
BYD1_k127_146981_53 preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000000000527 143.0
BYD1_k127_146981_54 - - - - 0.000000000000000000000000000001715 124.0
BYD1_k127_146981_55 DNA polymerase beta domain protein region K07075 - - 0.0000000000000000000000000000421 118.0
BYD1_k127_146981_57 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000007347 115.0
BYD1_k127_146981_58 Zinc-finger domain - - - 0.00000000000000000000006239 99.0
BYD1_k127_146981_6 UvrD-like helicase C-terminal domain - - - 1.35e-240 756.0
BYD1_k127_146981_60 Fic/DOC family N-terminal - - - 0.000000000000000000001443 96.0
BYD1_k127_146981_61 YXWGXW repeat (2 copies) - - - 0.00000000000000001095 90.0
BYD1_k127_146981_62 - - - - 0.0000000000000001005 86.0
BYD1_k127_146981_63 - - - - 0.00000000000003236 77.0
BYD1_k127_146981_7 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 6.015e-226 709.0
BYD1_k127_146981_8 Putative diguanylate phosphodiesterase - - - 4.136e-219 727.0
BYD1_k127_146981_9 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 3.122e-217 682.0
BYD1_k127_1494039_0 TonB dependent receptor K02014 - - 0.0 1218.0
BYD1_k127_1494039_1 Putative diguanylate phosphodiesterase - - - 0.0 1130.0
BYD1_k127_1494039_10 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 485.0
BYD1_k127_1494039_11 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004331 466.0
BYD1_k127_1494039_12 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 440.0
BYD1_k127_1494039_13 LysR substrate binding domain K04761 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 406.0
BYD1_k127_1494039_14 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009275 399.0
BYD1_k127_1494039_15 Binding-protein-dependent transport system inner membrane component K02054,K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 396.0
BYD1_k127_1494039_16 Linear amide C-N hydrolases, choloylglycine hydrolase family K01442 - 3.5.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 389.0
BYD1_k127_1494039_17 Binding-protein-dependent transport system inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 392.0
BYD1_k127_1494039_18 Peptidase U32 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 351.0
BYD1_k127_1494039_19 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 321.0
BYD1_k127_1494039_2 poly(R)-hydroxyalkanoic acid synthase K03821 - - 1e-308 955.0
BYD1_k127_1494039_20 VanZ like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003098 299.0
BYD1_k127_1494039_21 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001009 274.0
BYD1_k127_1494039_22 PFAM D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000008611 246.0
BYD1_k127_1494039_23 Domain of unknown function (DUF4154) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001374 236.0
BYD1_k127_1494039_24 - - - - 0.00000000000000000000000000000000000000000000000000000002117 209.0
BYD1_k127_1494039_25 acid phosphatase activity K03651 - 3.1.4.53 0.0000000000000000000000000000000000000000000000006046 190.0
BYD1_k127_1494039_26 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000007492 183.0
BYD1_k127_1494039_27 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000182 178.0
BYD1_k127_1494039_28 lipid carrier protein - - - 0.000000000000000000000000000000000000000000000003198 180.0
BYD1_k127_1494039_29 cell division protein - - - 0.000000000000000000000000000000000000000000000009436 178.0
BYD1_k127_1494039_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 1.26e-248 774.0
BYD1_k127_1494039_30 transcriptional - - - 0.0000000000000000000000000000000000000000000001081 173.0
BYD1_k127_1494039_31 PAS domain K03776 - - 0.0000000000000000000000000000000000001594 147.0
BYD1_k127_1494039_32 MazG-like family - - - 0.000000000000000000000000002245 127.0
BYD1_k127_1494039_33 PIN domain - - - 0.000000000000000000000000004529 124.0
BYD1_k127_1494039_34 Hemerythrin-like metal-binding protein - - - 0.000000000000000000001314 100.0
BYD1_k127_1494039_4 His Kinase A (phosphoacceptor) domain K11527 - 2.7.13.3 5.405e-235 779.0
BYD1_k127_1494039_5 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 1.407e-230 723.0
BYD1_k127_1494039_6 arginyl-tRNA aminoacylation K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 604.0
BYD1_k127_1494039_7 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 579.0
BYD1_k127_1494039_8 Peptidase U32 K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 573.0
BYD1_k127_1494039_9 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 545.0
BYD1_k127_1696304_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0 1114.0
BYD1_k127_1696304_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1003.0
BYD1_k127_1696304_10 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 533.0
BYD1_k127_1696304_11 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 509.0
BYD1_k127_1696304_12 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 481.0
BYD1_k127_1696304_13 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009018 460.0
BYD1_k127_1696304_14 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 441.0
BYD1_k127_1696304_15 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007192 466.0
BYD1_k127_1696304_16 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 421.0
BYD1_k127_1696304_17 branched-chain amino acid K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008396 419.0
BYD1_k127_1696304_18 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 379.0
BYD1_k127_1696304_19 Molybdenum cofactor biosynthesis protein K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 303.0
BYD1_k127_1696304_2 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 1.137e-250 793.0
BYD1_k127_1696304_20 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000000000005632 237.0
BYD1_k127_1696304_21 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000007831 246.0
BYD1_k127_1696304_22 Belongs to the phosphoglycerate mutase family K15634 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000005131 234.0
BYD1_k127_1696304_23 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000000000002251 195.0
BYD1_k127_1696304_24 Belongs to the UPF0307 family K09889 - - 0.0000000000000000000000000000000000000000000000000001241 191.0
BYD1_k127_1696304_25 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000002915 136.0
BYD1_k127_1696304_26 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A - - - 0.00000000000000000000000001573 113.0
BYD1_k127_1696304_27 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000004722 93.0
BYD1_k127_1696304_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 2.891e-232 723.0
BYD1_k127_1696304_4 Glycosyl hydrolase family 57 - - - 1.355e-215 704.0
BYD1_k127_1696304_5 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 3.451e-207 651.0
BYD1_k127_1696304_6 amino acid K01999 - - 2.434e-203 638.0
BYD1_k127_1696304_7 COG1982 Arginine lysine ornithine decarboxylases K01584 - 4.1.1.19 3.737e-201 628.0
BYD1_k127_1696304_8 modulator of DNA gyrase K03592 - - 1.738e-194 615.0
BYD1_k127_1696304_9 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 601.0
BYD1_k127_1731060_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 467.0
BYD1_k127_1731060_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 416.0
BYD1_k127_1731060_2 PFAM regulatory protein LuxR K13041 - - 0.0000000000000000000000000000000000000004239 151.0
BYD1_k127_1809002_0 Asp/Glu/Hydantoin racemase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 316.0
BYD1_k127_1809002_1 FAD binding domain K13796 - - 0.000000000000000000000000000000000000000000000000000000000000000000000956 245.0
BYD1_k127_1809002_2 Phosphoenolpyruvate phosphomutase K01841 - 5.4.2.9 0.00000000000000000000000000000000000000000000000000000000007954 218.0
BYD1_k127_1809002_3 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.0000000000000000000000000000000000000000000000000000000002542 211.0
BYD1_k127_1809002_4 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000004337 161.0
BYD1_k127_1809002_5 LysR substrate binding domain - - - 0.0000000000008714 73.0
BYD1_k127_1838943_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 0.0 1170.0
BYD1_k127_1838943_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 7.759e-207 650.0
BYD1_k127_1838943_2 RND efflux system, outer membrane lipoprotein K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 534.0
BYD1_k127_1838943_3 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 450.0
BYD1_k127_1838943_4 Nucleotidyltransferase domain - - - 0.000000000000000000000000000000000000000009552 156.0
BYD1_k127_1838943_5 HEPN domain - - - 0.00000000000000000000000000000008277 130.0
BYD1_k127_1920756_0 AMP-binding enzyme - - - 0.0 1197.0
BYD1_k127_1920756_1 aldehyde ferredoxin oxidoreductase activity K03738 - 1.2.7.5 6.012e-307 948.0
BYD1_k127_1920756_10 guanine deglycation, methylglyoxal removal K03152 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009653,GO:0030100,GO:0030587,GO:0031288,GO:0032502,GO:0032879,GO:0044424,GO:0044464,GO:0045807,GO:0048518,GO:0048522,GO:0048856,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051703,GO:0051704,GO:0060627,GO:0065007,GO:0090702,GO:0099120 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 300.0
BYD1_k127_1920756_11 Thioesterase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000006288 255.0
BYD1_k127_1920756_12 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000004083 223.0
BYD1_k127_1920756_13 - - - - 0.0000000000000000000000000000000000000000000000000000000004537 216.0
BYD1_k127_1920756_14 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000000000000000007635 205.0
BYD1_k127_1920756_15 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000001569 183.0
BYD1_k127_1920756_16 Domain of unknown function (DUF4142) K08995 - - 0.0000000000000000000000000000000000000000000003213 175.0
BYD1_k127_1920756_17 Belongs to the P-Pant transferase superfamily K06133 - - 0.0000000000000000000000000000000000000000000571 170.0
BYD1_k127_1920756_18 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000009222 168.0
BYD1_k127_1920756_19 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000003495 160.0
BYD1_k127_1920756_2 P-type ATPase K17686 - 3.6.3.54 8.556e-285 887.0
BYD1_k127_1920756_20 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.0000000000000000000000000001415 122.0
BYD1_k127_1920756_21 WbqC-like protein family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000007733 106.0
BYD1_k127_1920756_22 4Fe-4S dicluster domain - - - 0.0000000000000005769 87.0
BYD1_k127_1920756_25 Mut7-C ubiquitin - - - 0.0000000000001543 76.0
BYD1_k127_1920756_3 Transcriptional activator of acetoin glycerol metabolism K21405 - - 6.13e-255 809.0
BYD1_k127_1920756_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 603.0
BYD1_k127_1920756_5 glycosyl transferase group 1 K03208 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 588.0
BYD1_k127_1920756_6 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 488.0
BYD1_k127_1920756_7 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 345.0
BYD1_k127_1920756_8 aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 349.0
BYD1_k127_1920756_9 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 314.0
BYD1_k127_1964970_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 4.82e-289 894.0
BYD1_k127_1964970_1 helix_turn_helix, cAMP Regulatory protein - - - 0.00000361 53.0
BYD1_k127_1969718_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.641e-252 785.0
BYD1_k127_1969718_1 GGDEF domain - - - 5.485e-212 696.0
BYD1_k127_1969718_10 Protein of unknown function (DUF1211) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000129 267.0
BYD1_k127_1969718_11 PFAM cytochrome B561 K12262 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003836 250.0
BYD1_k127_1969718_12 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000000005166 204.0
BYD1_k127_1969718_13 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000001078 211.0
BYD1_k127_1969718_14 Thiol disulfide interchange protein K03673 - - 0.000000000000000000000000000000000000000000008251 173.0
BYD1_k127_1969718_15 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000003964 153.0
BYD1_k127_1969718_16 - - - - 0.000000000000000000000000000001516 126.0
BYD1_k127_1969718_17 Domain of unknown function (DUF4383) - - - 0.000000000000001227 83.0
BYD1_k127_1969718_18 bond formation protein DsbB K03611 - - 0.00000003725 57.0
BYD1_k127_1969718_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 568.0
BYD1_k127_1969718_3 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 506.0
BYD1_k127_1969718_4 PAS fold K10715,K20974 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 520.0
BYD1_k127_1969718_5 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 469.0
BYD1_k127_1969718_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 436.0
BYD1_k127_1969718_7 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 359.0
BYD1_k127_1969718_8 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008818 289.0
BYD1_k127_1969718_9 extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002948 276.0
BYD1_k127_2074719_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 545.0
BYD1_k127_2074719_1 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 439.0
BYD1_k127_2074719_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 304.0
BYD1_k127_2074719_3 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000001014 241.0
BYD1_k127_2074719_4 PFAM LmbE family protein - - - 0.0000000000000000000000000000000000003402 154.0
BYD1_k127_2095992_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1556.0
BYD1_k127_2095992_1 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 490.0
BYD1_k127_2095992_10 Protein of unknown function (DUF3703) - - - 0.00000000000000000002404 107.0
BYD1_k127_2095992_2 Sigma factor PP2C-like phosphatases K20977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000861 494.0
BYD1_k127_2095992_3 2-hydroxy-3-oxopropionate reductase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 409.0
BYD1_k127_2095992_4 Domain of unknown function (DUF4202) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 325.0
BYD1_k127_2095992_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005361 327.0
BYD1_k127_2095992_6 Histidine kinase-like ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 317.0
BYD1_k127_2095992_7 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 318.0
BYD1_k127_2095992_8 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000003026 246.0
BYD1_k127_2095992_9 cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.000000000000000000000000007609 113.0
BYD1_k127_2149678_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895,K01907 - 6.2.1.1,6.2.1.16 5.337e-315 975.0
BYD1_k127_2149678_1 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.217e-275 857.0
BYD1_k127_2149678_10 signal transduction protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003321 262.0
BYD1_k127_2149678_11 Thioesterase superfamily K07107 - - 0.0000000000000000000000000000000000000000000000006201 184.0
BYD1_k127_2149678_12 - - - - 0.000000000000000000000000000000000000000000000009821 193.0
BYD1_k127_2149678_13 - - - - 0.0000000000000000000000000000001882 126.0
BYD1_k127_2149678_2 Putative diguanylate phosphodiesterase - - - 3.236e-243 773.0
BYD1_k127_2149678_3 COG2202 FOG PAS PAC domain K03776 - - 1.128e-204 659.0
BYD1_k127_2149678_4 Hemerythrin HHE cation binding domain - - - 4.585e-197 628.0
BYD1_k127_2149678_5 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 1.772e-194 614.0
BYD1_k127_2149678_6 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026 541.0
BYD1_k127_2149678_7 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 382.0
BYD1_k127_2149678_8 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003591 381.0
BYD1_k127_2149678_9 SMART chemotaxis sensory transducer - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 383.0
BYD1_k127_2183017_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1440.0
BYD1_k127_2183017_1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 1.93e-322 1009.0
BYD1_k127_2183017_10 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006795 548.0
BYD1_k127_2183017_11 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007261 522.0
BYD1_k127_2183017_12 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 447.0
BYD1_k127_2183017_13 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 434.0
BYD1_k127_2183017_14 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 417.0
BYD1_k127_2183017_15 type II secretion system protein K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 417.0
BYD1_k127_2183017_16 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 391.0
BYD1_k127_2183017_17 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 346.0
BYD1_k127_2183017_18 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009847 334.0
BYD1_k127_2183017_19 TIGRFAM pyruvate ketoisovalerate oxidoreductase, gamma subunit K00172,K18357 - 1.2.1.58,1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 297.0
BYD1_k127_2183017_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 4.222e-308 949.0
BYD1_k127_2183017_20 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 293.0
BYD1_k127_2183017_21 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000107 285.0
BYD1_k127_2183017_22 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003006 267.0
BYD1_k127_2183017_23 Transcriptional regulator K16137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001938 249.0
BYD1_k127_2183017_24 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000006885 244.0
BYD1_k127_2183017_25 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000000000000000000000000000000000000000000000002704 233.0
BYD1_k127_2183017_26 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000000000002672 218.0
BYD1_k127_2183017_27 - - - - 0.000000000000000000000000000000000000000000000000000000001993 218.0
BYD1_k127_2183017_28 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000004012 203.0
BYD1_k127_2183017_29 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000000000000000000000000012 198.0
BYD1_k127_2183017_3 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 8.139e-277 880.0
BYD1_k127_2183017_30 - - - - 0.00000000000000000000000000000000000000000000000000001786 203.0
BYD1_k127_2183017_31 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000007126 180.0
BYD1_k127_2183017_32 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000000000000000000000000000000003007 169.0
BYD1_k127_2183017_33 ChaB - - - 0.00000000000000000000000000000000000000000002998 164.0
BYD1_k127_2183017_34 PFAM Cupin 2, conserved barrel domain protein K11312 - - 0.00000000000000000000000000000000000000003731 154.0
BYD1_k127_2183017_35 general secretion pathway protein - - - 0.0000000000000000000000000000000000000002586 162.0
BYD1_k127_2183017_36 Sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000007218 173.0
BYD1_k127_2183017_37 Phasin protein - - - 0.00000000000000000000000000000000003216 139.0
BYD1_k127_2183017_38 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000001874 136.0
BYD1_k127_2183017_39 Cache_2 - - - 0.0000000000000000000000000001691 120.0
BYD1_k127_2183017_4 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 5.132e-249 785.0
BYD1_k127_2183017_40 - - - - 0.00000000000000001341 93.0
BYD1_k127_2183017_5 Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family K03455 - - 4.683e-239 780.0
BYD1_k127_2183017_6 pyruvate flavodoxin ferredoxin oxidoreductase K00169 - 1.2.7.1 2.252e-216 680.0
BYD1_k127_2183017_7 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 1.689e-196 663.0
BYD1_k127_2183017_8 PFAM Thiamine pyrophosphate K00170,K18356 - 1.2.1.58,1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 574.0
BYD1_k127_2183017_9 Type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 589.0
BYD1_k127_2299656_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1675.0
BYD1_k127_2299656_1 COG0480 Translation elongation factors (GTPases) K02355 - - 0.0 1047.0
BYD1_k127_2299656_10 Methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 367.0
BYD1_k127_2299656_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 344.0
BYD1_k127_2299656_12 Sel1-like repeats. K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 311.0
BYD1_k127_2299656_13 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000001761 249.0
BYD1_k127_2299656_14 self proteolysis - - - 0.00000000000000000000000000000000000001913 165.0
BYD1_k127_2299656_15 Phage Tail Collar Domain - - - 0.0000000000000000000000000000000000004997 151.0
BYD1_k127_2299656_16 chemotaxis protein K03406 - - 0.00000000000000000005422 98.0
BYD1_k127_2299656_17 Copper binding periplasmic protein CusF - - - 0.00000000000000001968 91.0
BYD1_k127_2299656_18 - - - - 0.0000000008663 64.0
BYD1_k127_2299656_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 3.841e-311 964.0
BYD1_k127_2299656_3 TIGRFAM glutamate synthase, NADH NADPH, small subunit K00266 - 1.4.1.13,1.4.1.14 6.776e-264 818.0
BYD1_k127_2299656_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 3.892e-210 687.0
BYD1_k127_2299656_5 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 4.551e-209 658.0
BYD1_k127_2299656_6 Diguanylate cyclase - - - 5.347e-209 674.0
BYD1_k127_2299656_7 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009495 550.0
BYD1_k127_2299656_8 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005351 545.0
BYD1_k127_2299656_9 PFAM Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 473.0
BYD1_k127_2393228_0 Outer membrane protein beta-barrel family - - - 1.673e-272 865.0
BYD1_k127_2393228_1 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 3.629e-267 826.0
BYD1_k127_2393228_10 BadF/BadG/BcrA/BcrD ATPase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 467.0
BYD1_k127_2393228_11 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000994 408.0
BYD1_k127_2393228_12 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 394.0
BYD1_k127_2393228_13 Pyruvate ferredoxin oxidoreductase and related K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 407.0
BYD1_k127_2393228_14 Glycosyl transferase 4-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 374.0
BYD1_k127_2393228_15 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004661 329.0
BYD1_k127_2393228_16 sugar transferase K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001804 275.0
BYD1_k127_2393228_17 TIGRFAM pyruvate ferredoxin flavodoxin oxidoreductase, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001537 284.0
BYD1_k127_2393228_18 Cytochrome C biogenesis protein transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000002437 243.0
BYD1_k127_2393228_19 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000002383 233.0
BYD1_k127_2393228_2 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 7.783e-246 775.0
BYD1_k127_2393228_20 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family - - - 0.00000000000000000000000000000000000000000000000000000001161 205.0
BYD1_k127_2393228_21 - - - - 0.00000000000000000000000000000000000000000000000000000003785 202.0
BYD1_k127_2393228_22 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000000000002197 193.0
BYD1_k127_2393228_23 Outer membrane lipoprotein K06077 - - 0.000000000000000000000000000000000000000000000000001701 186.0
BYD1_k127_2393228_24 Biopolymer transport protein K03559 - - 0.000000000000000000000000000000000000000000000004124 189.0
BYD1_k127_2393228_25 TIGRFAM MJ0042 family finger-like protein - - - 0.0000000000000000000000000000000000000000000002077 181.0
BYD1_k127_2393228_26 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000001104 176.0
BYD1_k127_2393228_27 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000007375 156.0
BYD1_k127_2393228_28 COG0438 Glycosyltransferase - - - 0.00000000000000000000000000000000001552 137.0
BYD1_k127_2393228_29 Outer membrane protein beta-barrel family K02014 - - 0.000005019 51.0
BYD1_k127_2393228_3 Polysaccharide biosynthesis protein - - - 4.169e-226 721.0
BYD1_k127_2393228_4 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 3.992e-218 684.0
BYD1_k127_2393228_5 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 2.097e-210 663.0
BYD1_k127_2393228_6 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 585.0
BYD1_k127_2393228_7 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 586.0
BYD1_k127_2393228_8 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 516.0
BYD1_k127_2393228_9 COG0524 Sugar kinases, ribokinase family K00856 - 2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 477.0
BYD1_k127_2403080_0 'signal transduction protein - - - 0.00000000000000000000000000000000000000000000007948 181.0
BYD1_k127_2432246_0 Vitamin K epoxide reductase family - - - 0.0 1361.0
BYD1_k127_2432246_1 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1128.0
BYD1_k127_2432246_10 Major Facilitator - - - 1.429e-205 647.0
BYD1_k127_2432246_11 abc-type branched-chain amino acid transport K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 601.0
BYD1_k127_2432246_12 response to heat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 591.0
BYD1_k127_2432246_13 type I secretion membrane fusion protein, HlyD family K02022 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007392 548.0
BYD1_k127_2432246_14 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 557.0
BYD1_k127_2432246_15 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 525.0
BYD1_k127_2432246_16 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 512.0
BYD1_k127_2432246_17 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 489.0
BYD1_k127_2432246_18 PFAM Deoxyribonuclease II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 456.0
BYD1_k127_2432246_19 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 428.0
BYD1_k127_2432246_2 AAA ATPase domain - - - 3.447e-297 930.0
BYD1_k127_2432246_20 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006117 415.0
BYD1_k127_2432246_21 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005847 393.0
BYD1_k127_2432246_22 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 368.0
BYD1_k127_2432246_23 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 364.0
BYD1_k127_2432246_24 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 352.0
BYD1_k127_2432246_25 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 349.0
BYD1_k127_2432246_26 Zinc dependent phospholipase C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007192 334.0
BYD1_k127_2432246_27 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 323.0
BYD1_k127_2432246_28 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 303.0
BYD1_k127_2432246_29 CBS domain containing protein K07168 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001714 272.0
BYD1_k127_2432246_3 of ABC transporters with duplicated ATPase - - - 4.082e-295 912.0
BYD1_k127_2432246_30 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000001355 284.0
BYD1_k127_2432246_31 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001744 253.0
BYD1_k127_2432246_32 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008207 247.0
BYD1_k127_2432246_33 Alkylphosphonate utilization operon protein PhnA K06193 - - 0.0000000000000000000000000000000000000000000000000000000000001385 214.0
BYD1_k127_2432246_34 Bacterial extracellular solute-binding proteins, family 3 - - - 0.0000000000000000000000000000000000000000000000000000000007075 210.0
BYD1_k127_2432246_35 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576 3.1.3.48 0.0000000000000000000000000000000000000000000000000000000008473 204.0
BYD1_k127_2432246_36 Belongs to the RNase T2 family K01166 - 3.1.27.1 0.00000000000000000000000000000000000000000000000000000002756 219.0
BYD1_k127_2432246_37 - - - - 0.0000000000000000000000000000000000000008546 156.0
BYD1_k127_2432246_38 - - - - 0.000000000000000000000000000000000000006257 153.0
BYD1_k127_2432246_39 - - - - 0.0000000000000000000000000000000000002453 154.0
BYD1_k127_2432246_4 Histidine kinase - - - 7.027e-274 863.0
BYD1_k127_2432246_40 SMART Cold shock protein K03704 - - 0.0000000000000000000000000000000000102 136.0
BYD1_k127_2432246_41 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000009062 138.0
BYD1_k127_2432246_42 - - - - 0.000000000000000000000002673 109.0
BYD1_k127_2432246_43 DNA topological change - - - 0.0000000000000000000001731 96.0
BYD1_k127_2432246_44 - - - - 0.000000000000000000004853 98.0
BYD1_k127_2432246_45 sequence-specific DNA binding K15539 - - 0.00000000000002204 75.0
BYD1_k127_2432246_47 - - - - 0.000000000001744 72.0
BYD1_k127_2432246_48 Transcriptional regulator - - - 0.000000000002002 70.0
BYD1_k127_2432246_49 - - - - 0.00000000001617 77.0
BYD1_k127_2432246_5 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 1.939e-264 844.0
BYD1_k127_2432246_50 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000001132 70.0
BYD1_k127_2432246_51 Domain of unknown function (DUF4224) - - - 0.00000002671 64.0
BYD1_k127_2432246_53 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.000002005 58.0
BYD1_k127_2432246_56 protein kinase activity - - - 0.000447 42.0
BYD1_k127_2432246_6 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.594e-228 715.0
BYD1_k127_2432246_7 2-nitropropane dioxygenase K00459 - 1.13.12.16 1.346e-222 694.0
BYD1_k127_2432246_8 DNA helicase K03657 - 3.6.4.12 3.993e-214 682.0
BYD1_k127_2432246_9 Aminotransferase K00832 - 2.6.1.57 2.994e-206 648.0
BYD1_k127_2577149_0 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000609 510.0
BYD1_k127_2577149_1 A G-specific K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 430.0
BYD1_k127_2577149_2 carbonic anhydrase K01674 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 385.0
BYD1_k127_2577149_3 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0000000000000000000000000000000000000000000000002069 181.0
BYD1_k127_2584236_0 succinate dehydrogenase fumarate reductase, flavoprotein subunit K00394 - 1.8.99.2 8.003e-287 893.0
BYD1_k127_2584236_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000009557 225.0
BYD1_k127_2584236_2 reductase beta subunit K00395 - 1.8.99.2 0.0000000000000000000000000000000000000000000000000000004281 200.0
BYD1_k127_258640_0 Na H antiporter K05559 - - 0.0 1252.0
BYD1_k127_258640_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1103.0
BYD1_k127_258640_10 Belongs to the thiolase family K00626 - 2.3.1.9 2.339e-214 670.0
BYD1_k127_258640_11 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850,K21071 - 2.7.1.11,2.7.1.90 3.903e-196 616.0
BYD1_k127_258640_12 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 4.49e-196 616.0
BYD1_k127_258640_13 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 607.0
BYD1_k127_258640_14 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 601.0
BYD1_k127_258640_15 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 576.0
BYD1_k127_258640_16 PFAM aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008364 565.0
BYD1_k127_258640_17 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 550.0
BYD1_k127_258640_18 COG3170 Tfp pilus assembly protein FimV K08086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 551.0
BYD1_k127_258640_19 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009601 524.0
BYD1_k127_258640_2 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 2.593e-281 872.0
BYD1_k127_258640_20 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 512.0
BYD1_k127_258640_21 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 496.0
BYD1_k127_258640_22 Proton-conducting membrane transporter K05561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 509.0
BYD1_k127_258640_23 Domain of unknown function (DUF4118) K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005255 503.0
BYD1_k127_258640_24 Zn-dependent protease with chaperone function K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 484.0
BYD1_k127_258640_25 COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 427.0
BYD1_k127_258640_26 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005847 415.0
BYD1_k127_258640_27 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 409.0
BYD1_k127_258640_28 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 389.0
BYD1_k127_258640_29 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 389.0
BYD1_k127_258640_3 Transport of potassium into the cell K03549 - - 1.568e-270 845.0
BYD1_k127_258640_30 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 369.0
BYD1_k127_258640_31 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 369.0
BYD1_k127_258640_32 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 362.0
BYD1_k127_258640_33 Transcriptional regulatory protein, C terminal K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 344.0
BYD1_k127_258640_34 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 338.0
BYD1_k127_258640_35 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 330.0
BYD1_k127_258640_36 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 324.0
BYD1_k127_258640_37 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 312.0
BYD1_k127_258640_38 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 307.0
BYD1_k127_258640_39 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009258 302.0
BYD1_k127_258640_4 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 2.882e-250 779.0
BYD1_k127_258640_40 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 288.0
BYD1_k127_258640_41 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000272 297.0
BYD1_k127_258640_42 RNA pseudouridylate synthase K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008636 274.0
BYD1_k127_258640_43 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000003904 267.0
BYD1_k127_258640_44 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000001237 254.0
BYD1_k127_258640_45 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002244 248.0
BYD1_k127_258640_46 Thiopurine S-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000004829 237.0
BYD1_k127_258640_47 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000000000000000007094 231.0
BYD1_k127_258640_48 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000000000000000000000000000000004696 237.0
BYD1_k127_258640_49 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.0000000000000000000000000000000000000000000000000000000000002959 211.0
BYD1_k127_258640_5 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.846e-248 770.0
BYD1_k127_258640_50 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000001522 204.0
BYD1_k127_258640_51 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000000000002911 201.0
BYD1_k127_258640_52 Aspartyl protease K06985 - - 0.00000000000000000000000000000000000000000000000000000003759 203.0
BYD1_k127_258640_53 Biopolymer transport protein K03559 - - 0.0000000000000000000000000000000000000000000000000000001259 198.0
BYD1_k127_258640_54 colicin v production K03558 - - 0.000000000000000000000000000000000000000000000000000001969 195.0
BYD1_k127_258640_55 Multisubunit Na H antiporter, MnhE subunit K05562 - - 0.0000000000000000000000000000000000000000000000000001431 207.0
BYD1_k127_258640_56 diol metabolic process K01724 - 4.2.1.96 0.00000000000000000000000000000000000000000000001359 172.0
BYD1_k127_258640_57 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000008919 172.0
BYD1_k127_258640_58 oxidoreductase, chain 4L K05560 - - 0.0000000000000000000000000000000000000000000001185 169.0
BYD1_k127_258640_59 Na+/H+ antiporter subunit K05564 - - 0.00000000000000000000000000000000000000001468 160.0
BYD1_k127_258640_6 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 5.889e-246 763.0
BYD1_k127_258640_60 Sporulation related domain K03749 - - 0.00000000000000000000000000000000000000008518 162.0
BYD1_k127_258640_61 Protein of unknown function (DUF465) K09794 - - 0.0000000000000000000000000000000002115 136.0
BYD1_k127_258640_62 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000000000000003296 133.0
BYD1_k127_258640_63 - - - - 0.000000000000000000000000000000004112 132.0
BYD1_k127_258640_64 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000001575 124.0
BYD1_k127_258640_65 Protein of unknown function (DUF2788) - - - 0.00000000000000000000000000001035 118.0
BYD1_k127_258640_66 Cytochrome c - - - 0.000000000000000000000000008941 123.0
BYD1_k127_258640_67 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000006964 117.0
BYD1_k127_258640_68 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates - - - 0.000000000000000000005376 101.0
BYD1_k127_258640_69 Multiple resistance and pH regulation protein F (MrpF / PhaF) K05563 - - 0.000000000000000000008928 102.0
BYD1_k127_258640_7 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 3.991e-240 745.0
BYD1_k127_258640_70 Heat shock protein DnaJ domain protein - - - 0.0000000000000008737 92.0
BYD1_k127_258640_71 Trm112p-like protein K09791 - - 0.000000000000002057 77.0
BYD1_k127_258640_72 - - - - 0.0000000000008214 71.0
BYD1_k127_258640_73 response to toxic substance K16348 - - 0.000009455 53.0
BYD1_k127_258640_8 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 9.362e-234 732.0
BYD1_k127_258640_9 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 3.188e-230 715.0
BYD1_k127_2837692_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1429.0
BYD1_k127_2837692_1 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1418.0
BYD1_k127_2837692_10 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 595.0
BYD1_k127_2837692_11 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 517.0
BYD1_k127_2837692_12 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 458.0
BYD1_k127_2837692_13 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007081 442.0
BYD1_k127_2837692_14 chemotaxis K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009358 404.0
BYD1_k127_2837692_15 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 387.0
BYD1_k127_2837692_16 recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 386.0
BYD1_k127_2837692_17 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007404 381.0
BYD1_k127_2837692_18 ATP-grasp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 373.0
BYD1_k127_2837692_19 HD domain K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 325.0
BYD1_k127_2837692_2 PFAM malic K00029 - 1.1.1.40 0.0 1119.0
BYD1_k127_2837692_20 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 298.0
BYD1_k127_2837692_21 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 295.0
BYD1_k127_2837692_22 Cobyrinic acid ac-diamide synthase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008378 288.0
BYD1_k127_2837692_23 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002258 275.0
BYD1_k127_2837692_24 Acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000001347 275.0
BYD1_k127_2837692_25 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003457 250.0
BYD1_k127_2837692_26 Protein of unknown function DUF45 K07043 - - 0.000000000000000000000000000000000000000000000000000000000000003038 232.0
BYD1_k127_2837692_27 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000048 222.0
BYD1_k127_2837692_28 COG0350 Methylated DNA-protein cysteine methyltransferase K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000001294 216.0
BYD1_k127_2837692_29 response to heat K03668 - - 0.0000000000000000000000000000000000000000000000000000000321 212.0
BYD1_k127_2837692_3 DNA helicase K03657 - 3.6.4.12 0.0 1034.0
BYD1_k127_2837692_30 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000000000002764 200.0
BYD1_k127_2837692_31 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000001045 192.0
BYD1_k127_2837692_32 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000000000000001059 179.0
BYD1_k127_2837692_33 Sporulation related domain - - - 0.0000000000000000000000000000000000000004378 170.0
BYD1_k127_2837692_34 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.0000000000000000000000000000000000000006592 153.0
BYD1_k127_2837692_35 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000442 165.0
BYD1_k127_2837692_36 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000000000000002473 127.0
BYD1_k127_2837692_38 Metal-dependent hydrolase K07043 - - 0.00000000000000006245 88.0
BYD1_k127_2837692_39 response regulator, receiver K03407,K07678,K14978 GO:0000155,GO:0000160,GO:0000302,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009636,GO:0009927,GO:0009987,GO:0010033,GO:0010035,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046677,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901700 2.7.13.3 0.000000000000003949 80.0
BYD1_k127_2837692_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0 1015.0
BYD1_k127_2837692_40 Hemerythrin HHE cation binding domain protein K07216 - - 0.000000000000005465 81.0
BYD1_k127_2837692_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.448e-272 857.0
BYD1_k127_2837692_6 PAS domain - - - 1.73e-245 789.0
BYD1_k127_2837692_7 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 2.427e-198 625.0
BYD1_k127_2837692_8 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 3.049e-197 632.0
BYD1_k127_2837692_9 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 585.0
BYD1_k127_2906079_0 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008243 365.0
BYD1_k127_2906079_1 FecR protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000008451 254.0
BYD1_k127_2906079_2 CHASE2 K10715 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000188 204.0
BYD1_k127_2906079_3 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000001073 139.0
BYD1_k127_2906079_4 haemagglutination activity domain - - - 0.0000000000000000000837 93.0
BYD1_k127_2906079_5 protein secretion - - - 0.0003146 54.0
BYD1_k127_2919780_0 Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1 K05939 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0008779,GO:0008922,GO:0009058,GO:0009987,GO:0015645,GO:0016020,GO:0016021,GO:0016740,GO:0016746,GO:0016747,GO:0016874,GO:0016877,GO:0016878,GO:0019637,GO:0019752,GO:0031224,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044425,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.3.1.40,6.2.1.20 0.0 1101.0
BYD1_k127_2919780_1 Putative methyltransferase - - - 3.37e-305 945.0
BYD1_k127_2919780_10 - - - - 0.0000001379 59.0
BYD1_k127_2919780_11 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.0000002252 56.0
BYD1_k127_2919780_2 Major facilitator Superfamily K05939 - 2.3.1.40,6.2.1.20 1.746e-288 898.0
BYD1_k127_2919780_3 Dual specificity phosphatase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 557.0
BYD1_k127_2919780_4 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 484.0
BYD1_k127_2919780_5 transcriptional regulators - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 322.0
BYD1_k127_2919780_6 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 289.0
BYD1_k127_2919780_7 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000577 273.0
BYD1_k127_2919780_8 Phospholipase D Active site motif - - - 0.000000000000000003513 86.0
BYD1_k127_2919780_9 lipoprotein involved in nitrous oxide reduction - - - 0.00000000000000002588 81.0
BYD1_k127_2946397_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0 1180.0
BYD1_k127_2946397_1 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 2.324e-265 828.0
BYD1_k127_2946397_10 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 317.0
BYD1_k127_2946397_11 Histidine kinase K20975 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004054 316.0
BYD1_k127_2946397_12 Transcriptional regulator K07722 - - 0.000000000000000000000000000000000000000000000000000000000000000001157 231.0
BYD1_k127_2946397_13 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000009492 223.0
BYD1_k127_2946397_14 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.000000000000000000000000000000000000000000000000000000000001123 236.0
BYD1_k127_2946397_15 stringent starvation protein B K03600 - - 0.000000000000000000000000000000000000005061 149.0
BYD1_k127_2946397_16 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352 - 1.8.5.5 0.0000000000000000000000008672 105.0
BYD1_k127_2946397_17 - - - - 0.00000002683 62.0
BYD1_k127_2946397_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 7.14e-243 754.0
BYD1_k127_2946397_3 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 2.365e-238 749.0
BYD1_k127_2946397_4 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K17722 - 1.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 621.0
BYD1_k127_2946397_5 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 588.0
BYD1_k127_2946397_6 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 526.0
BYD1_k127_2946397_7 Belongs to the GST superfamily K03599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008503 400.0
BYD1_k127_2946397_8 Belongs to the NiCoT transporter (TC 2.A.52) family K07241 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008322 364.0
BYD1_k127_2946397_9 Cytochrome C1 K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 351.0
BYD1_k127_3124129_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 1.253e-312 964.0
BYD1_k127_3124129_1 4Fe-4S ferredoxin iron-sulfur binding domain protein K21834 - - 9.267e-209 659.0
BYD1_k127_3124129_10 nitrate reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001753 270.0
BYD1_k127_3124129_11 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000000000000000000000000000000000000000007254 217.0
BYD1_k127_3124129_12 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000005613 201.0
BYD1_k127_3124129_13 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000364 173.0
BYD1_k127_3124129_15 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000000000000000000007016 161.0
BYD1_k127_3124129_16 Belongs to the ArsC family K00537 - 1.20.4.1 0.0000000000000000000000000000000000001097 144.0
BYD1_k127_3124129_17 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000000003482 136.0
BYD1_k127_3124129_18 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.00000000000000000001579 95.0
BYD1_k127_3124129_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 543.0
BYD1_k127_3124129_3 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K06282 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 528.0
BYD1_k127_3124129_4 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 495.0
BYD1_k127_3124129_5 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000751 428.0
BYD1_k127_3124129_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006141 319.0
BYD1_k127_3124129_7 Hsp33 protein K04083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008142 321.0
BYD1_k127_3124129_8 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 295.0
BYD1_k127_3124129_9 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001312 283.0
BYD1_k127_3132751_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 7.026e-244 773.0
BYD1_k127_3132751_1 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 502.0
BYD1_k127_3132751_11 VanZ like family - - - 0.00000000000003866 79.0
BYD1_k127_3132751_12 Antibiotic biosynthesis monooxygenase - - - 0.0002643 43.0
BYD1_k127_3132751_2 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 488.0
BYD1_k127_3132751_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000005784 215.0
BYD1_k127_3132751_4 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000005814 207.0
BYD1_k127_3132751_5 PAS fold - - - 0.000000000000000000000000000000000000000000000000000324 198.0
BYD1_k127_3132751_6 Putative beta-barrel porin 2 - - - 0.000000000000000000000000000000000000000000000008975 187.0
BYD1_k127_3132751_7 Histidine kinase - - - 0.0000000000000000000000000000000000000000005522 169.0
BYD1_k127_3132751_8 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000000000000000000006141 166.0
BYD1_k127_3132751_9 GDYXXLXY protein - - - 0.00000000000000000000003614 115.0
BYD1_k127_3140115_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 2.77e-199 629.0
BYD1_k127_3140115_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004277 411.0
BYD1_k127_3140115_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000005422 221.0
BYD1_k127_3159730_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 3.616e-282 869.0
BYD1_k127_3159730_1 Sulfate transporter antisigma-factor antagonist STAS K03321 - - 9.485e-242 767.0
BYD1_k127_3159730_10 RNA-binding S4 domain-containing protein K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005687 342.0
BYD1_k127_3159730_11 Protein of unknown function, DUF484 K09921 - - 0.00000000000000000000000000000000000000000000000000000000000000000192 238.0
BYD1_k127_3159730_12 Methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000002541 241.0
BYD1_k127_3159730_13 ZIP Zinc transporter K16267 - - 0.0000000000000000000000000000000000000000000000000000008162 209.0
BYD1_k127_3159730_14 coa-binding K06929 - - 0.000000000000000000000000000000000000000000000000003203 185.0
BYD1_k127_3159730_15 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000000000002012 157.0
BYD1_k127_3159730_16 Cache_2 - - - 0.00000000000000000000000000003808 124.0
BYD1_k127_3159730_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 2.083e-230 718.0
BYD1_k127_3159730_3 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 589.0
BYD1_k127_3159730_4 5,10-methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 436.0
BYD1_k127_3159730_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 419.0
BYD1_k127_3159730_6 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 378.0
BYD1_k127_3159730_7 phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 379.0
BYD1_k127_3159730_8 acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 375.0
BYD1_k127_3159730_9 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 346.0
BYD1_k127_3204971_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.0 1515.0
BYD1_k127_3204971_1 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 8.386e-305 943.0
BYD1_k127_3204971_10 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 365.0
BYD1_k127_3204971_11 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 369.0
BYD1_k127_3204971_12 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 351.0
BYD1_k127_3204971_13 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 312.0
BYD1_k127_3204971_14 Molybdopterin binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 292.0
BYD1_k127_3204971_15 TIGRFAM channel protein, hemolysin III family K11068 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001133 272.0
BYD1_k127_3204971_16 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003019 266.0
BYD1_k127_3204971_17 - - - - 0.000000000000000000000000000000000000000000000000000000000000000005876 232.0
BYD1_k127_3204971_18 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000005992 235.0
BYD1_k127_3204971_19 Outer membrane lipoprotein-sorting protein - - - 0.0000000000000000000000000000000000000000000000000000000000000115 226.0
BYD1_k127_3204971_2 Transcriptional regulator with HTH domain and aminotransferase domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 571.0
BYD1_k127_3204971_20 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000001887 216.0
BYD1_k127_3204971_21 Predicted metal-dependent hydrolase K07044 - - 0.0000000000000000000000000000000000000000000000000000005179 203.0
BYD1_k127_3204971_22 - - - - 0.0000000000000000000000000000000000000000000000000000019 203.0
BYD1_k127_3204971_23 Peptidyl-prolyl cis-trans K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000007056 188.0
BYD1_k127_3204971_24 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000000000000000000000000000000000003937 170.0
BYD1_k127_3204971_25 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000000000000000003964 153.0
BYD1_k127_3204971_26 Uncharacterized ACR, COG1993 - - - 0.000000000000000000000000000000000000004447 148.0
BYD1_k127_3204971_27 Etoposide-induced protein 2.4 (EI24) - - - 0.00000000000000000000000000000000000003184 152.0
BYD1_k127_3204971_28 - - - - 0.0000000000000000000000000000000001164 153.0
BYD1_k127_3204971_29 KTSC domain - - - 0.0000000000000000000000000000000007235 134.0
BYD1_k127_3204971_3 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 574.0
BYD1_k127_3204971_30 Transcriptional regulator - - - 0.000000000000000000000000224 110.0
BYD1_k127_3204971_31 - - - - 0.0000000000000000001685 96.0
BYD1_k127_3204971_32 Cyclic nucleotide-monophosphate binding domain K10914 - - 0.000000000000000002955 96.0
BYD1_k127_3204971_33 - - - - 0.0000000001746 66.0
BYD1_k127_3204971_35 EAL domain K21024 - 3.1.4.52 0.00004529 55.0
BYD1_k127_3204971_4 PFAM Aminotransferase class I and II K14287 - 2.6.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 524.0
BYD1_k127_3204971_5 Belongs to the FBPase class 1 family K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 521.0
BYD1_k127_3204971_6 Histidine Phosphotransfer domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 458.0
BYD1_k127_3204971_7 Flagellar Assembly Protein A K09749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 456.0
BYD1_k127_3204971_8 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009506 430.0
BYD1_k127_3204971_9 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 369.0
BYD1_k127_3285573_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007311 421.0
BYD1_k127_3285573_1 Dihydroorotate dehydrogenase K17723 GO:0003674,GO:0003824,GO:0003954,GO:0006139,GO:0006206,GO:0006208,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016491,GO:0016651,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 1.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000001169 234.0
BYD1_k127_3285573_2 amidohydrolase K01686,K07045 - 4.2.1.8 0.0000000000000000000000000000000000000000000000000000000006364 217.0
BYD1_k127_330712_0 UPF0313 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008108 395.0
BYD1_k127_330712_1 Belongs to the DNA glycosylase MPG family K03652 GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000001535 215.0
BYD1_k127_330712_2 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000003012 189.0
BYD1_k127_330712_3 ABC-type phosphate transport system, periplasmic component - - - 0.000000000000000000000000000000000005924 143.0
BYD1_k127_3310869_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1035.0
BYD1_k127_3310869_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.624e-304 944.0
BYD1_k127_3310869_10 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 431.0
BYD1_k127_3310869_11 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 428.0
BYD1_k127_3310869_12 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 409.0
BYD1_k127_3310869_13 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 394.0
BYD1_k127_3310869_14 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003795 360.0
BYD1_k127_3310869_15 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008466 328.0
BYD1_k127_3310869_16 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007578 298.0
BYD1_k127_3310869_17 HAD-superfamily hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 298.0
BYD1_k127_3310869_18 Sigma E regulatory protein, MucB RseB K03598 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 300.0
BYD1_k127_3310869_19 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007008 287.0
BYD1_k127_3310869_2 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 1.064e-260 812.0
BYD1_k127_3310869_20 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002481 272.0
BYD1_k127_3310869_21 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003939 259.0
BYD1_k127_3310869_22 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000000006504 158.0
BYD1_k127_3310869_23 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000000017 141.0
BYD1_k127_3310869_24 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.00000000000000000000000000000000002346 141.0
BYD1_k127_3310869_25 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000000000000004415 122.0
BYD1_k127_3310869_26 Domain of unknown function (DUF4845) - - - 0.00000000000000000000000002175 115.0
BYD1_k127_3310869_27 Glutaredoxin-like domain (DUF836) K00384 - 1.8.1.9 0.0000000000000000000002405 100.0
BYD1_k127_3310869_28 Anti sigma-E protein RseA K03597 - - 0.000000000000007534 83.0
BYD1_k127_3310869_29 Positive regulator of sigma(E), RseC/MucC K03803 - - 0.0000003598 62.0
BYD1_k127_3310869_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 4.608e-241 747.0
BYD1_k127_3310869_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 9.361e-207 652.0
BYD1_k127_3310869_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 479.0
BYD1_k127_3310869_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 471.0
BYD1_k127_3310869_7 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 467.0
BYD1_k127_3310869_8 signal peptide peptidase K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 460.0
BYD1_k127_3310869_9 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 438.0
BYD1_k127_3311950_0 pilus assembly protein K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 454.0
BYD1_k127_3311950_1 Type II and III secretion system protein K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 424.0
BYD1_k127_3311950_2 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 308.0
BYD1_k127_3311950_3 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 308.0
BYD1_k127_3311950_4 TadE-like protein - - - 0.000000000000000000000000000000000001833 152.0
BYD1_k127_3311950_5 TadE-like protein - - - 0.0000000000000000000000000000004673 134.0
BYD1_k127_3311950_6 - - - - 0.0000000000000000000004614 101.0
BYD1_k127_3363393_0 RimK-like ATP-grasp domain K03802 - 6.3.2.29,6.3.2.30 0.0 1324.0
BYD1_k127_3363393_1 C-terminal, D2-small domain, of ClpB protein K03694 - - 0.0 1212.0
BYD1_k127_3363393_10 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 575.0
BYD1_k127_3363393_11 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005032 556.0
BYD1_k127_3363393_12 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17218,K17229 - 1.8.2.3,1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 529.0
BYD1_k127_3363393_13 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 524.0
BYD1_k127_3363393_14 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007266 396.0
BYD1_k127_3363393_15 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006066 316.0
BYD1_k127_3363393_16 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004454 317.0
BYD1_k127_3363393_17 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002748 283.0
BYD1_k127_3363393_18 Cytochrome b/b6/petB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002823 278.0
BYD1_k127_3363393_19 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009834 279.0
BYD1_k127_3363393_2 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147 - - 0.0 1170.0
BYD1_k127_3363393_20 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000001465 263.0
BYD1_k127_3363393_21 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000003517 244.0
BYD1_k127_3363393_22 Domain of unknown function (DUF1854) - - - 0.00000000000000000000000000000000000000000000000000000000000001124 220.0
BYD1_k127_3363393_23 Diguanylate cyclase K21084 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000701 239.0
BYD1_k127_3363393_24 NapC/NirT cytochrome c family, N-terminal region K02569 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0044464,GO:0045333,GO:0055114,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000502 207.0
BYD1_k127_3363393_25 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000002379 201.0
BYD1_k127_3363393_26 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000000000000000000000000000000000000000002968 197.0
BYD1_k127_3363393_27 Pfam cytochrome c K17230 - - 0.000000000000000000000000000000000000000000000000658 187.0
BYD1_k127_3363393_28 - - - - 0.000000000000000000000000000000000000000000000005393 176.0
BYD1_k127_3363393_29 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000000003157 159.0
BYD1_k127_3363393_3 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 5.235e-295 923.0
BYD1_k127_3363393_30 Bacterial-like globin K06886 - - 0.000000000000000000000000000000000000000002116 162.0
BYD1_k127_3363393_31 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000000000000000000002148 140.0
BYD1_k127_3363393_32 - - - - 0.000000000000000000000000000007761 123.0
BYD1_k127_3363393_33 - - - - 0.0000000000000000000000000001641 119.0
BYD1_k127_3363393_34 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000001383 110.0
BYD1_k127_3363393_35 Dodecin K09165 - - 0.000000000000000000003507 100.0
BYD1_k127_3363393_36 His Kinase A (phosphoacceptor) domain - - - 0.000009978 57.0
BYD1_k127_3363393_4 Malate synthase K01638 - 2.3.3.9 1.404e-292 903.0
BYD1_k127_3363393_5 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 5.791e-257 806.0
BYD1_k127_3363393_6 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 2.519e-246 765.0
BYD1_k127_3363393_7 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 3.65e-234 728.0
BYD1_k127_3363393_8 Cytochrome C oxidase accessory protein - - - 1.414e-209 663.0
BYD1_k127_3363393_9 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 572.0
BYD1_k127_3411480_0 His Kinase A (phospho-acceptor) domain - - - 0.0 1211.0
BYD1_k127_3411480_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1189.0
BYD1_k127_3411480_10 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 567.0
BYD1_k127_3411480_11 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 490.0
BYD1_k127_3411480_12 (Lipo)protein K07287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 494.0
BYD1_k127_3411480_13 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 472.0
BYD1_k127_3411480_14 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007824 450.0
BYD1_k127_3411480_15 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 434.0
BYD1_k127_3411480_16 PFAM ATPase associated with various cellular activities, AAA_3 K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 413.0
BYD1_k127_3411480_17 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009557 385.0
BYD1_k127_3411480_18 RNA polymerase sigma K03087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 371.0
BYD1_k127_3411480_19 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 364.0
BYD1_k127_3411480_2 COG0210 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 0.0 1016.0
BYD1_k127_3411480_20 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 347.0
BYD1_k127_3411480_21 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003229 333.0
BYD1_k127_3411480_22 Belongs to the BI1 family K19416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 323.0
BYD1_k127_3411480_23 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 317.0
BYD1_k127_3411480_24 lytic murein transglycosylase K08305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 324.0
BYD1_k127_3411480_25 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 304.0
BYD1_k127_3411480_26 Lysin motif K06194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001086 291.0
BYD1_k127_3411480_27 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001188 290.0
BYD1_k127_3411480_28 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001541 250.0
BYD1_k127_3411480_29 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003793 252.0
BYD1_k127_3411480_3 DNA polymerase III K02342 - 2.7.7.7 9.453e-305 956.0
BYD1_k127_3411480_30 Uncharacterized protein family, UPF0114 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001833 236.0
BYD1_k127_3411480_31 PFAM Peptidase S24 S26A S26B, conserved region K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000003123 218.0
BYD1_k127_3411480_32 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000004152 195.0
BYD1_k127_3411480_33 Transcriptional regulator - - - 0.0000000000000000000000000000000000000002418 151.0
BYD1_k127_3411480_34 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000000000000000001088 147.0
BYD1_k127_3411480_35 Periplasmic Protein - - - 0.00000000000000000000006114 102.0
BYD1_k127_3411480_36 - - - - 0.000000000000000009446 85.0
BYD1_k127_3411480_4 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 3.514e-300 933.0
BYD1_k127_3411480_5 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 5.42e-299 920.0
BYD1_k127_3411480_6 nitrite reductase K00368 - 1.7.2.1 3.789e-215 681.0
BYD1_k127_3411480_7 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.983e-210 659.0
BYD1_k127_3411480_8 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 602.0
BYD1_k127_3411480_9 Transglutaminase/protease-like homologues K22452 - 2.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 611.0
BYD1_k127_35194_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1335.0
BYD1_k127_35194_1 extracellular solute-binding protein - - - 0.0 1075.0
BYD1_k127_35194_10 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 351.0
BYD1_k127_35194_11 ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 314.0
BYD1_k127_35194_12 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000002043 227.0
BYD1_k127_35194_13 hydroxypyruvate reductase K11529 - 2.7.1.165 0.0000000000000000000000000001794 115.0
BYD1_k127_35194_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 2.257e-229 715.0
BYD1_k127_35194_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 573.0
BYD1_k127_35194_4 peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 576.0
BYD1_k127_35194_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 462.0
BYD1_k127_35194_6 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 441.0
BYD1_k127_35194_7 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 461.0
BYD1_k127_35194_8 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 419.0
BYD1_k127_35194_9 phytoene K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 364.0
BYD1_k127_3520564_0 argininosuccinate lyase K01755 - 4.3.2.1 9.643e-235 733.0
BYD1_k127_3520564_1 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007707 524.0
BYD1_k127_3520564_2 PFAM Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 453.0
BYD1_k127_3520564_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003954 424.0
BYD1_k127_3520564_4 alginate biosynthesis protein AlgZ FimS K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 317.0
BYD1_k127_3520564_5 LytTr DNA-binding domain K08083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000523 307.0
BYD1_k127_3520564_6 Dihydrodipicolinate reductase, C-terminus - - - 0.00000000000000000000000000000000000000000000000000008672 190.0
BYD1_k127_3520564_7 addiction module antidote protein - - - 0.000000000000000000000000000000000000000000000001735 174.0
BYD1_k127_3520564_8 addiction module killer protein - - - 0.000000000000000000000000000000000000000001914 157.0
BYD1_k127_3520564_9 - - - - 0.0000000000000000000000000000000005513 134.0
BYD1_k127_3547211_0 4Fe-4S single cluster domain - - - 8.638e-209 653.0
BYD1_k127_3547211_1 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 6.636e-197 631.0
BYD1_k127_3547211_2 Cache 3/Cache 2 fusion domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 554.0
BYD1_k127_3547211_3 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 500.0
BYD1_k127_3547211_4 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004344 451.0
BYD1_k127_3547211_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000001042 167.0
BYD1_k127_3547211_6 Domain of unknown function (DUF4390) - - - 0.0000000000000000000000000000000000000000009917 172.0
BYD1_k127_3569983_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 4.631e-285 882.0
BYD1_k127_3569983_1 PFAM Mammalian cell entry related domain protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000007105 247.0
BYD1_k127_3569983_2 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000000000002275 129.0
BYD1_k127_3582059_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.278e-282 874.0
BYD1_k127_3582059_1 Belongs to the RuBisCO large chain family K01601 - 4.1.1.39 1.399e-276 853.0
BYD1_k127_3582059_10 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005632 435.0
BYD1_k127_3582059_11 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 443.0
BYD1_k127_3582059_12 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149 441.0
BYD1_k127_3582059_13 serine protease K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 436.0
BYD1_k127_3582059_14 abc transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007129 416.0
BYD1_k127_3582059_15 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 408.0
BYD1_k127_3582059_16 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 378.0
BYD1_k127_3582059_17 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 360.0
BYD1_k127_3582059_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 352.0
BYD1_k127_3582059_19 VacJ family lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 344.0
BYD1_k127_3582059_2 Polyphosphate kinase 2 (PPK2) - - - 5.923e-256 800.0
BYD1_k127_3582059_20 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 338.0
BYD1_k127_3582059_21 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 329.0
BYD1_k127_3582059_22 LysR substrate binding domain K21703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 328.0
BYD1_k127_3582059_23 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 315.0
BYD1_k127_3582059_24 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 310.0
BYD1_k127_3582059_25 fumarylacetoacetate (FAA) hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004836 303.0
BYD1_k127_3582059_26 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 298.0
BYD1_k127_3582059_27 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001782 256.0
BYD1_k127_3582059_28 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000005003 244.0
BYD1_k127_3582059_29 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000001963 248.0
BYD1_k127_3582059_3 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 8.527e-222 692.0
BYD1_k127_3582059_30 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002303 235.0
BYD1_k127_3582059_31 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000000000000003222 224.0
BYD1_k127_3582059_32 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000001867 224.0
BYD1_k127_3582059_33 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000396 186.0
BYD1_k127_3582059_34 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.000000000000000000000000000000000000000000001742 173.0
BYD1_k127_3582059_35 phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.00000000000000000000000000000000000000000001767 170.0
BYD1_k127_3582059_36 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.000000000000000000000000005609 117.0
BYD1_k127_3582059_37 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000000000008736 104.0
BYD1_k127_3582059_38 BolA-like protein - - - 0.00000000000000000000002128 101.0
BYD1_k127_3582059_39 Protein of unknown function (DUF1059) - - - 0.00000000000000000003041 93.0
BYD1_k127_3582059_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 6.757e-194 640.0
BYD1_k127_3582059_40 STAS domain K07122 - - 0.0000000000369 70.0
BYD1_k127_3582059_41 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.0003366 51.0
BYD1_k127_3582059_5 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 580.0
BYD1_k127_3582059_6 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 524.0
BYD1_k127_3582059_7 Belongs to the peptidase S1C family K04691,K04772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 507.0
BYD1_k127_3582059_8 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 508.0
BYD1_k127_3582059_9 Phosphoribulokinase K00855 - 2.7.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004904 478.0
BYD1_k127_36605_0 Peptidase U32 K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 578.0
BYD1_k127_36605_1 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 554.0
BYD1_k127_36605_10 response to cobalt ion - - - 0.000000000000000000000000000000000000000164 156.0
BYD1_k127_36605_11 Nucleotide pyrophosphohydrolase - - - 0.0000000000000000000000000000000000004834 142.0
BYD1_k127_36605_2 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007098 446.0
BYD1_k127_36605_3 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 367.0
BYD1_k127_36605_4 Peptidase family U32 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003611 366.0
BYD1_k127_36605_5 VanZ like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003492 275.0
BYD1_k127_36605_6 ABC-2 type transporter K09694 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006091 271.0
BYD1_k127_36605_7 hydrolase of the alpha beta superfamily K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001268 264.0
BYD1_k127_36605_8 lipid carrier protein - - - 0.000000000000000000000000000000000000000000000002622 180.0
BYD1_k127_36605_9 Ferredoxin - - - 0.0000000000000000000000000000000000000000000001992 168.0
BYD1_k127_3666589_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0 1061.0
BYD1_k127_3666589_1 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 1.038e-261 819.0
BYD1_k127_3666589_10 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 358.0
BYD1_k127_3666589_11 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 318.0
BYD1_k127_3666589_12 Esterase of the alpha-beta hydrolase superfamily K07001 GO:0003674,GO:0003824,GO:0016787 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 304.0
BYD1_k127_3666589_13 synthesis repressor, PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001156 279.0
BYD1_k127_3666589_15 protein conserved in bacteria K09937 - - 0.000000000000001267 79.0
BYD1_k127_3666589_16 TonB-dependent receptor - - - 0.0000000001673 71.0
BYD1_k127_3666589_18 - - - - 0.0000000003163 63.0
BYD1_k127_3666589_19 Sulfatase-modifying factor enzyme 1 - - - 0.0000001488 62.0
BYD1_k127_3666589_2 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 3.609e-231 721.0
BYD1_k127_3666589_3 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 4.261e-224 709.0
BYD1_k127_3666589_4 glycolate oxidase subunit GlcD - - - 1.139e-194 619.0
BYD1_k127_3666589_5 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 512.0
BYD1_k127_3666589_6 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 448.0
BYD1_k127_3666589_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000608 424.0
BYD1_k127_3666589_8 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 428.0
BYD1_k127_3666589_9 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023 - 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007547 405.0
BYD1_k127_3692040_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352 - 1.8.5.5 4.638e-285 896.0
BYD1_k127_3692040_1 Fic/DOC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 544.0
BYD1_k127_3692040_2 Histidine kinase K13040 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007413 539.0
BYD1_k127_3692040_3 response to heat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 438.0
BYD1_k127_3692040_4 N-acetylmuramoyl-L-alanine amidase K01447,K11066 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007727 292.0
BYD1_k127_3692040_5 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007068 245.0
BYD1_k127_3692040_6 PFAM Peptidase M18, aminopeptidase I K01267 - 3.4.11.21 0.00000000000000000000000000000000000000000000000000000000000000000004925 234.0
BYD1_k127_3692040_7 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000004693 202.0
BYD1_k127_3692040_8 - - - - 0.000000000000000000000000008504 114.0
BYD1_k127_373007_0 Cytochrome c K08685 - 1.4.9.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000008419 274.0
BYD1_k127_373007_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000685 219.0
BYD1_k127_3752176_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 4.759e-282 885.0
BYD1_k127_3752176_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 3.828e-232 730.0
BYD1_k127_3752176_10 epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006815 351.0
BYD1_k127_3752176_11 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 345.0
BYD1_k127_3752176_12 Cytochrome bd terminal oxidase subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 353.0
BYD1_k127_3752176_13 Tellurite resistance protein TehB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 315.0
BYD1_k127_3752176_14 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 301.0
BYD1_k127_3752176_15 Ferritin, Dps family protein K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001151 259.0
BYD1_k127_3752176_16 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000000000000001182 216.0
BYD1_k127_3752176_17 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000000000000000000000000001439 188.0
BYD1_k127_3752176_18 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000001231 173.0
BYD1_k127_3752176_19 HicA toxin of bacterial toxin-antitoxin, - - - 0.00000000000000000000000000000000000000000006597 162.0
BYD1_k127_3752176_2 oxidase, subunit K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 550.0
BYD1_k127_3752176_20 Hemerythrin HHE cation binding domain K07216 - - 0.00000000000000000000000000003291 134.0
BYD1_k127_3752176_21 - - - - 0.000000000000000000006974 96.0
BYD1_k127_3752176_22 cheY-homologous receiver domain K11443 - - 0.000000000000000001055 98.0
BYD1_k127_3752176_23 BON domain - - - 0.00000000000009225 79.0
BYD1_k127_3752176_24 Protein of unknown function (DUF1328) - - - 0.0000000000001968 76.0
BYD1_k127_3752176_3 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 537.0
BYD1_k127_3752176_4 Belongs to the methyltransferase superfamily K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 505.0
BYD1_k127_3752176_5 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 492.0
BYD1_k127_3752176_6 phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 487.0
BYD1_k127_3752176_7 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 447.0
BYD1_k127_3752176_8 Mg2 and Co2 transporter CorC K06189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 405.0
BYD1_k127_3752176_9 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008858 390.0
BYD1_k127_3752934_0 COG1472 Beta-glucosidase-related glycosidases K05349 - 3.2.1.21 2.475e-276 868.0
BYD1_k127_3752934_1 Tryptophan halogenase K14266 - 1.14.19.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 441.0
BYD1_k127_3982330_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 1.298e-271 856.0
BYD1_k127_3982330_1 Radical SAM domain protein - - - 2.337e-211 665.0
BYD1_k127_3982330_10 UDP-4-amino-4-deoxy-L-arabinose aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002749 251.0
BYD1_k127_3982330_11 Cytochrome c K17223 - - 0.000000000000000000000000000000000000000000000000000000000001384 216.0
BYD1_k127_3982330_12 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000002166 220.0
BYD1_k127_3982330_13 phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000000000000000000000000000000000000001155 201.0
BYD1_k127_3982330_14 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000008067 194.0
BYD1_k127_3982330_15 Acylneuraminate cytidylyltransferase K18431 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.7.82 0.0000000000000000000000000000000000000000000000000005825 205.0
BYD1_k127_3982330_17 PFAM glycosyl transferase family 2 K07011 - - 0.000000000004929 76.0
BYD1_k127_3982330_2 PFAM NAD-dependent epimerase dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 574.0
BYD1_k127_3982330_3 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 539.0
BYD1_k127_3982330_4 Nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 488.0
BYD1_k127_3982330_5 UDP-N-acetylglucosamine 2-epimerase K01791,K08068 - 3.2.1.183,5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 482.0
BYD1_k127_3982330_6 acid synthase K01654 - 2.5.1.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006507 429.0
BYD1_k127_3982330_7 CHAD domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 358.0
BYD1_k127_3982330_8 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 295.0
BYD1_k127_3982330_9 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003183 276.0
BYD1_k127_3995292_0 Malic enzyme, NAD binding domain K00027,K00029 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40 0.0 1045.0
BYD1_k127_3995292_1 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 0.0 1030.0
BYD1_k127_3995292_10 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 464.0
BYD1_k127_3995292_11 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007386 451.0
BYD1_k127_3995292_12 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 433.0
BYD1_k127_3995292_13 Protein of unknown function (DUF475) K09799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 419.0
BYD1_k127_3995292_14 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 413.0
BYD1_k127_3995292_15 D-isomer specific 2-hydroxyacid dehydrogenase K00018 - 1.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 421.0
BYD1_k127_3995292_16 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009224 385.0
BYD1_k127_3995292_17 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 360.0
BYD1_k127_3995292_18 Belongs to the peptidase S11 family K07262 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003421 350.0
BYD1_k127_3995292_19 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007663 312.0
BYD1_k127_3995292_2 Domain of unknown function (DUF3390) K18929 - - 2.002e-220 698.0
BYD1_k127_3995292_20 PFAM type IV pilus assembly PilZ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001311 276.0
BYD1_k127_3995292_21 N-acetylmuramoyl-L-alanine amidase (Family 2) K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000001612 264.0
BYD1_k127_3995292_22 LUD domain K00782 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004886 255.0
BYD1_k127_3995292_23 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000000000000000009127 164.0
BYD1_k127_3995292_24 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000000000007203 146.0
BYD1_k127_3995292_25 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000000000000001571 132.0
BYD1_k127_3995292_26 Histone H1-like nucleoprotein HC2 K11275 - - 0.00000000000000000000000001547 114.0
BYD1_k127_3995292_27 PFAM KaiB domain K08481 - - 0.00000000000000000001553 107.0
BYD1_k127_3995292_3 Sulfatase - - - 7.458e-201 648.0
BYD1_k127_3995292_4 Diguanylate cyclase - - - 8.554e-194 633.0
BYD1_k127_3995292_5 NhaP-type Na H and K H antiporters with a unique C-terminal domain K11105 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 601.0
BYD1_k127_3995292_6 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 572.0
BYD1_k127_3995292_7 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004163 562.0
BYD1_k127_3995292_8 Domain of unknown function (DUF3391) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004693 473.0
BYD1_k127_3995292_9 PFAM ATP-binding region, ATPase domain protein K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 478.0
BYD1_k127_4123960_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1009.0
BYD1_k127_4123960_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 8.462e-303 932.0
BYD1_k127_4123960_10 thiosulfate sulfurtransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 472.0
BYD1_k127_4123960_11 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004734 432.0
BYD1_k127_4123960_12 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 417.0
BYD1_k127_4123960_13 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 414.0
BYD1_k127_4123960_14 drug resistance K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 407.0
BYD1_k127_4123960_15 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 394.0
BYD1_k127_4123960_16 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006852 384.0
BYD1_k127_4123960_17 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 387.0
BYD1_k127_4123960_18 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 333.0
BYD1_k127_4123960_19 belongs to the wrba family K03809 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 324.0
BYD1_k127_4123960_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.506e-255 792.0
BYD1_k127_4123960_20 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 295.0
BYD1_k127_4123960_21 D-alanyl-D-alanine carboxypeptidase K01286,K07262 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008838 288.0
BYD1_k127_4123960_22 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000002242 264.0
BYD1_k127_4123960_23 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000001122 244.0
BYD1_k127_4123960_24 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000000000000000000002087 238.0
BYD1_k127_4123960_25 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000000000000000006442 231.0
BYD1_k127_4123960_26 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000001143 218.0
BYD1_k127_4123960_27 Oligoketide cyclase lipid transport protein - - - 0.000000000000000000000000000000000000000000000000000000000002086 211.0
BYD1_k127_4123960_28 NfeD-like C-terminal, partner-binding K07340 - - 0.00000000000000000000000000000000000000000000000001958 190.0
BYD1_k127_4123960_29 Belongs to the skp family K06142 - - 0.0000000000000000000000000000000000000000000000004427 186.0
BYD1_k127_4123960_3 Cytochrome c bacterial - - - 2.542e-249 779.0
BYD1_k127_4123960_32 Belongs to the UPF0125 (RnfH) family K09801 - - 0.0000000000000000000000000000000000001581 146.0
BYD1_k127_4123960_33 ACT domain - - - 0.0000000000000002593 87.0
BYD1_k127_4123960_4 - K07112 - - 9.832e-208 651.0
BYD1_k127_4123960_5 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005755 571.0
BYD1_k127_4123960_6 deoxyribose-phosphate aldolase phospho-2-dehydro-3-deoxyheptonate aldolase K11645 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003432 551.0
BYD1_k127_4123960_7 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 523.0
BYD1_k127_4123960_8 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 506.0
BYD1_k127_4123960_9 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 469.0
BYD1_k127_4157928_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1754.0
BYD1_k127_4157928_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1503.0
BYD1_k127_4157928_10 Sulfurtransferase TusA K04085 - - 0.0000000000000000000000000000000006399 131.0
BYD1_k127_4157928_11 - - - - 0.0000000000000000000000000000009855 125.0
BYD1_k127_4157928_2 PFAM NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007434 589.0
BYD1_k127_4157928_3 Glucose inhibited division protein A K03388,K16885 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 574.0
BYD1_k127_4157928_4 long-chain fatty acid transport protein K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 488.0
BYD1_k127_4157928_5 PFAM 4Fe-4S K00184,K21308 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 469.0
BYD1_k127_4157928_6 DMSO reductase anchor subunit (DmsC) K21309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 452.0
BYD1_k127_4157928_7 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 293.0
BYD1_k127_4157928_8 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002418 267.0
BYD1_k127_4157928_9 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002434 272.0
BYD1_k127_4201929_0 Aminotransferase class I and II K09758 - 4.1.1.12 1.09e-262 818.0
BYD1_k127_4201929_1 potassium ion transport K07085 - - 0.000000000000000000000000000000000000000000000000000000000000000003588 227.0
BYD1_k127_4201929_2 - - - - 0.000000000000000007071 87.0
BYD1_k127_4334748_0 Dolichyl-phosphate-mannose-protein mannosyltransferase K00786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 504.0
BYD1_k127_4334748_1 His Kinase A (phosphoacceptor) domain K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 447.0
BYD1_k127_4334748_2 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 343.0
BYD1_k127_4334748_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000008872 155.0
BYD1_k127_4334748_4 Transcriptional regulatory protein, C terminal K07666 - - 0.00000000000000000013 88.0
BYD1_k127_4338365_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 602.0
BYD1_k127_4338365_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 610.0
BYD1_k127_4338365_10 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008776 320.0
BYD1_k127_4338365_11 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 312.0
BYD1_k127_4338365_12 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001827 267.0
BYD1_k127_4338365_13 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001289 263.0
BYD1_k127_4338365_14 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001713 264.0
BYD1_k127_4338365_15 methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000000000000000009778 227.0
BYD1_k127_4338365_16 Thioredoxin K03671 - - 0.000000000000000000000000000000000000000000000001834 176.0
BYD1_k127_4338365_17 Ferredoxin - - - 0.0000000000000000000000000000000000000000002207 159.0
BYD1_k127_4338365_19 Outer membrane lipoprotein LolB K02494 - - 0.00000000000000000000003746 106.0
BYD1_k127_4338365_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 537.0
BYD1_k127_4338365_20 glutamine synthetase K01915 - 6.3.1.2 0.00000000006166 65.0
BYD1_k127_4338365_21 - - - - 0.0005948 42.0
BYD1_k127_4338365_3 Peptidase M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 487.0
BYD1_k127_4338365_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 492.0
BYD1_k127_4338365_5 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006434 480.0
BYD1_k127_4338365_6 Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 409.0
BYD1_k127_4338365_7 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009649 393.0
BYD1_k127_4338365_8 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 378.0
BYD1_k127_4338365_9 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008323 372.0
BYD1_k127_4349755_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 1.388e-315 976.0
BYD1_k127_4349755_1 helix_turn_helix, cAMP Regulatory protein - - - 0.00000361 53.0
BYD1_k127_4400072_0 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 3.722e-249 773.0
BYD1_k127_4400072_1 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000436 250.0
BYD1_k127_4400072_2 AsmA family K07289,K07290 - - 0.000000000000000000000000000000006946 143.0
BYD1_k127_4428305_0 CHAT domain - - - 0.0 1547.0
BYD1_k127_4428305_1 Diguanylate cyclase - - - 7.935e-194 631.0
BYD1_k127_4428305_10 - - - - 0.0000000000000000000000000000003698 123.0
BYD1_k127_4428305_11 photoreceptor activity - - - 0.0000000000000000000000000000006177 140.0
BYD1_k127_4428305_12 - - - - 0.0000000000000000000000000000009128 126.0
BYD1_k127_4428305_13 Protein conserved in bacteria - - - 0.0000000000000000007023 90.0
BYD1_k127_4428305_14 Cupin domain - - - 0.000000000000171 83.0
BYD1_k127_4428305_15 carbohydrate binding - - - 0.000000006541 62.0
BYD1_k127_4428305_2 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 596.0
BYD1_k127_4428305_3 B-1 B cell differentiation K04043 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 405.0
BYD1_k127_4428305_4 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006503 295.0
BYD1_k127_4428305_5 SMART ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001086 304.0
BYD1_k127_4428305_6 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.00000000000000000000000000000000000000000000000000000000002349 216.0
BYD1_k127_4428305_7 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system - - - 0.0000000000000000000000000000000000000000000000002316 180.0
BYD1_k127_4428305_8 Belongs to the UPF0235 family K09131 - - 0.000000000000000000000000000000000000000001009 160.0
BYD1_k127_4428305_9 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000000000000000000000002585 142.0
BYD1_k127_4512420_0 related to Ser Thr protein kinases K07102 GO:0000166,GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006022,GO:0006040,GO:0006082,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 365.0
BYD1_k127_4512420_1 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 351.0
BYD1_k127_4512420_2 MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002901 284.0
BYD1_k127_4512420_3 PFAM Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000008416 251.0
BYD1_k127_4512420_4 - - - - 0.00000000000000000000000000000000000000000000000004106 186.0
BYD1_k127_4512420_5 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000000000000000007715 160.0
BYD1_k127_4595142_0 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 581.0
BYD1_k127_4595142_1 ABC transporter transmembrane region - - - 0.0000000000000000002959 88.0
BYD1_k127_4617691_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1763.0
BYD1_k127_4617691_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 0.0 1127.0
BYD1_k127_4617691_10 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000007868 217.0
BYD1_k127_4617691_11 fimbrial biogenesis protein PilN K02663 - - 0.0000000000000000000000000000000000000000000000000000000000001218 222.0
BYD1_k127_4617691_12 pilus assembly protein PilP K02665 - - 0.000000000000000000000000000000000000000000000000002297 188.0
BYD1_k127_4617691_13 Belongs to the frataxin K06202 - - 0.000000000000000000000000000000002811 136.0
BYD1_k127_4617691_2 Type 4 fimbrial biogenesis protein K02666 - - 2.47e-242 770.0
BYD1_k127_4617691_3 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.853e-222 696.0
BYD1_k127_4617691_4 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006998 591.0
BYD1_k127_4617691_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 516.0
BYD1_k127_4617691_6 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 506.0
BYD1_k127_4617691_7 Pilus assembly protein K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 496.0
BYD1_k127_4617691_8 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008732 392.0
BYD1_k127_4617691_9 Pilus assembly protein PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000018 282.0
BYD1_k127_4633320_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007582 440.0
BYD1_k127_4633320_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 389.0
BYD1_k127_4633320_2 Pilin (bacterial filament) K02650 - - 0.000000000000000000000000000000000000000000000000003917 186.0
BYD1_k127_4674592_0 Poly-beta-hydroxybutyrate K03821 - - 1.228e-267 834.0
BYD1_k127_4674592_1 Cytochrome C oxidase accessory protein - - - 1.553e-210 662.0
BYD1_k127_4674592_10 redox protein, regulator of disulfide bond formation - - - 0.000000000005728 76.0
BYD1_k127_4674592_11 Protein of unknown function (DUF3149) - - - 0.0000000002722 62.0
BYD1_k127_4674592_2 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009159 524.0
BYD1_k127_4674592_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 394.0
BYD1_k127_4674592_4 Belongs to the heme-copper respiratory oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 310.0
BYD1_k127_4674592_5 Universal stress protein - - - 0.000000000000000000000000000000000000000000000000000000000000000009116 227.0
BYD1_k127_4674592_6 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000004337 177.0
BYD1_k127_4674592_7 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000531 147.0
BYD1_k127_4674592_8 Invasion gene expression up-regulator SirB - - - 0.000000000000000000000000000000000002156 141.0
BYD1_k127_4674592_9 FixH family K09926 - - 0.0000000000000000000000000000000004359 139.0
BYD1_k127_4704445_0 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000008534 232.0
BYD1_k127_4704445_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000001862 192.0
BYD1_k127_4704445_2 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000001073 194.0
BYD1_k127_4704445_3 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000001076 102.0
BYD1_k127_4728704_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0 1035.0
BYD1_k127_4728704_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 583.0
BYD1_k127_4728704_2 chemotaxis K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 576.0
BYD1_k127_4728704_3 Domain of unknown function (DUF4143) K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 449.0
BYD1_k127_4728704_4 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 357.0
BYD1_k127_4728704_5 PFAM Hemerythrin HHE cation binding domain K07216 - - 0.00000000000000000000000000000000000002346 151.0
BYD1_k127_4728704_6 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000000000000000005618 108.0
BYD1_k127_4731211_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1313.0
BYD1_k127_4731211_1 N-6 DNA Methylase K03427 - 2.1.1.72 1.064e-283 876.0
BYD1_k127_4731211_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008706 491.0
BYD1_k127_4731211_3 Virulence protein RhuM family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 455.0
BYD1_k127_4731211_4 competence protein COMEC - - - 0.000000000000000000000000000000000000000000000000000000000003839 220.0
BYD1_k127_4731211_5 type I restriction modification DNA specificity domain - - - 0.00000000000000000000000000000000000000000000000000003085 194.0
BYD1_k127_4731211_6 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000005488 113.0
BYD1_k127_4731211_7 Uncharacterised protein family (UPF0149) K07039 - - 0.0003116 44.0
BYD1_k127_4731356_0 FAD linked oxidase - - - 0.0 1958.0
BYD1_k127_4731356_1 Methionine synthase K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0 1559.0
BYD1_k127_4731356_10 Diguanylate cyclase - - - 2.628e-228 740.0
BYD1_k127_4731356_11 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 9.434e-226 714.0
BYD1_k127_4731356_12 glutamate--cysteine ligase K01919 - 6.3.2.2 6.823e-222 693.0
BYD1_k127_4731356_13 Mg chelatase subunit ChlI K07391 - - 2.46e-203 645.0
BYD1_k127_4731356_14 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004166 537.0
BYD1_k127_4731356_15 PelD GGDEF domain K21009 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 522.0
BYD1_k127_4731356_16 Eco57I restriction-modification methylase K07317 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 474.0
BYD1_k127_4731356_17 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 443.0
BYD1_k127_4731356_18 drug resistance transporter K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006204 432.0
BYD1_k127_4731356_19 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 427.0
BYD1_k127_4731356_2 Bacterial transcriptional activator domain - - - 1.768e-304 977.0
BYD1_k127_4731356_20 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 404.0
BYD1_k127_4731356_21 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 390.0
BYD1_k127_4731356_22 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 374.0
BYD1_k127_4731356_23 phosphoserine phosphatase K02203 - 2.7.1.39,3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 337.0
BYD1_k127_4731356_24 Putative exopolysaccharide Exporter (EPS-E) K21012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 344.0
BYD1_k127_4731356_25 TRANSCRIPTIONal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 313.0
BYD1_k127_4731356_26 SMART chemotaxis sensory transducer - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 307.0
BYD1_k127_4731356_27 import inner membrane translocase subunit Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000478 284.0
BYD1_k127_4731356_28 RmlD substrate binding domain K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006501 285.0
BYD1_k127_4731356_29 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006676 288.0
BYD1_k127_4731356_3 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 1.192e-297 949.0
BYD1_k127_4731356_30 Bacterial protein of unknown function (Gcw_chp) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002082 253.0
BYD1_k127_4731356_31 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000000000000000000001773 235.0
BYD1_k127_4731356_32 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000000000000000000009051 220.0
BYD1_k127_4731356_33 Belongs to the P(II) protein family K04752 - - 0.00000000000000000000000000000000000000000000000000000000001152 209.0
BYD1_k127_4731356_34 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.00000000000000000000000000000000000000000000000000000000006355 206.0
BYD1_k127_4731356_35 cAMP biosynthetic process K21008 - - 0.000000000000000000000000000000000000000000000000000000002563 214.0
BYD1_k127_4731356_36 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000000001073 194.0
BYD1_k127_4731356_37 - - - - 0.00000000000000000000000000000000000000000000000003998 181.0
BYD1_k127_4731356_38 PFAM Peptidase S24 S26A S26B, conserved region K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000001248 183.0
BYD1_k127_4731356_39 Histidine triad (HIT) - - - 0.000000000000000000000000000000000000000000000208 171.0
BYD1_k127_4731356_4 Tetratricopeptide repeat K21007 - - 3.888e-293 929.0
BYD1_k127_4731356_40 Protein of unknown function (DUF4238) - - - 0.0000000000000000000000000000000000000000007529 169.0
BYD1_k127_4731356_41 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000001526 163.0
BYD1_k127_4731356_42 Phosphotransferase System K11189 - - 0.00000000000000000000000000000000000002258 145.0
BYD1_k127_4731356_43 protein conserved in bacteria K03690 - - 0.0000000000000000000000000001563 120.0
BYD1_k127_4731356_44 Psort location Cytoplasmic, score 8.96 K09806 - - 0.00000000000000000000003578 101.0
BYD1_k127_4731356_45 Tetratricopeptide repeat K21007 - - 0.00000000000000000003171 103.0
BYD1_k127_4731356_47 Toxic component of a type I toxin-antitoxin (TA) system. Upon overexpression inhibits growth and reduces colony-forming units in both the presence and absence of the Rac prophage, cells become filamentous. Has deoxyribonuclease activity (probably endonucleolytic), does not digest RNA. Its toxic effects are neutralized by sRNA antitoxin RalA, which is encoded in trans on the opposite DNA strand. Has RAL-like activity K19779 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1990238 - 0.0003267 46.0
BYD1_k127_4731356_5 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 4.847e-285 887.0
BYD1_k127_4731356_6 Glycoside-hydrolase family GH114 - - - 1.709e-260 835.0
BYD1_k127_4731356_7 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 4.661e-243 753.0
BYD1_k127_4731356_8 glycosyl transferase group 1 K21011 - - 3.096e-240 751.0
BYD1_k127_4731356_9 Ammonium transporter K03320 - - 5.746e-238 743.0
BYD1_k127_4786395_0 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.0 1247.0
BYD1_k127_4786395_1 Cation transport ATPase (P-type) K01537 - 3.6.3.8 0.0 1201.0
BYD1_k127_4786395_10 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005212 277.0
BYD1_k127_4786395_11 Sodium/calcium exchanger protein K07301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002736 251.0
BYD1_k127_4786395_12 PFAM regulatory protein LuxR K13041 - - 0.000000000000000000000000000000000000000000000000002774 184.0
BYD1_k127_4786395_13 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000004904 145.0
BYD1_k127_4786395_14 Pentapeptide repeats (9 copies) - - - 0.000000000000000002631 94.0
BYD1_k127_4786395_15 Domain of unknown function (DUF4143) K07133 - - 0.00000000001495 73.0
BYD1_k127_4786395_2 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 1.535e-259 818.0
BYD1_k127_4786395_3 antibiotic catabolic process K18235 - - 5.665e-221 695.0
BYD1_k127_4786395_4 Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB K02014,K16092 - - 1.097e-213 673.0
BYD1_k127_4786395_5 Involved in arsenical resistance. Thought to form the channel of an arsenite pump - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 599.0
BYD1_k127_4786395_6 MASE1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 587.0
BYD1_k127_4786395_7 ATPase (AAA superfamily K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 407.0
BYD1_k127_4786395_8 TIGRFAM cell division ATP-binding protein FtsE K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 300.0
BYD1_k127_4786395_9 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 294.0
BYD1_k127_4816227_0 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 4.11e-256 814.0
BYD1_k127_4816227_1 ABC transporter transmembrane region K06147 - - 1.659e-253 802.0
BYD1_k127_4816227_10 PRC-barrel domain - - - 0.000000000000000000000000000000000000000000000000000000001008 205.0
BYD1_k127_4816227_11 - - - - 0.0000000000000000000000000000000000000000000000001139 202.0
BYD1_k127_4816227_12 Protein of unknown function (DUF3175) - - - 0.0000000000000000000000000005958 129.0
BYD1_k127_4816227_2 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 3.389e-234 732.0
BYD1_k127_4816227_3 Sodium/hydrogen exchanger family K03455 - - 2.597e-194 626.0
BYD1_k127_4816227_4 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 533.0
BYD1_k127_4816227_5 hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 306.0
BYD1_k127_4816227_6 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003695 312.0
BYD1_k127_4816227_7 Glycosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 302.0
BYD1_k127_4816227_8 transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation P32146. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme, suggesting that many members of this family may not have this catalytic activity K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004222 273.0
BYD1_k127_4816227_9 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006957 249.0
BYD1_k127_4927955_0 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 - 6.4.1.1 0.0 1761.0
BYD1_k127_4942689_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1305.0
BYD1_k127_4942689_1 HlyD family secretion protein K16922 - - 3.319e-286 901.0
BYD1_k127_4942689_2 self proteolysis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000608 598.0
BYD1_k127_4942689_3 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 564.0
BYD1_k127_4942689_4 ATPase, AAA superfamily K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 520.0
BYD1_k127_4942689_5 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 357.0
BYD1_k127_4942689_6 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000002086 121.0
BYD1_k127_4942689_7 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000355 91.0
BYD1_k127_5017055_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 1.041e-304 946.0
BYD1_k127_5017055_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 2.918e-225 707.0
BYD1_k127_5017055_10 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 304.0
BYD1_k127_5017055_11 Redoxin K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001857 285.0
BYD1_k127_5017055_12 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000001124 250.0
BYD1_k127_5017055_13 Cytochrome c-type biogenesis protein K02200 - - 0.0000000000000000000000000000000000000000000000000000000000003082 228.0
BYD1_k127_5017055_14 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000000000000000473 209.0
BYD1_k127_5017055_15 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000000000000001517 192.0
BYD1_k127_5017055_16 Nitrogen regulatory protein P-II - - - 0.00000000000000000000000000000000000000000002112 183.0
BYD1_k127_5017055_17 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000001477 136.0
BYD1_k127_5017055_18 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000000003737 120.0
BYD1_k127_5017055_19 - - - - 0.0000000000000000000000001407 116.0
BYD1_k127_5017055_2 Protein of unknown function (DUF1538) - - - 1.552e-219 695.0
BYD1_k127_5017055_20 Protein of unknown function (DUF3460) - - - 0.000000000000001032 88.0
BYD1_k127_5017055_21 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000001636 71.0
BYD1_k127_5017055_22 Acetyltransferase (GNAT) domain - - - 0.0006452 48.0
BYD1_k127_5017055_3 Fic/DOC family - - - 1.697e-201 630.0
BYD1_k127_5017055_4 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 425.0
BYD1_k127_5017055_5 COG0631 Serine threonine protein phosphatase K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 375.0
BYD1_k127_5017055_6 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009566 351.0
BYD1_k127_5017055_7 Stress-induced protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 332.0
BYD1_k127_5017055_8 Domain of unknown function (DUF3883) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 320.0
BYD1_k127_5017055_9 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 301.0
BYD1_k127_5034165_0 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 0.0 1787.0
BYD1_k127_5034165_1 Alpha-amylase domain K01187 - 3.2.1.20 0.0 1373.0
BYD1_k127_5034165_2 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0 1097.0
BYD1_k127_5034165_3 trehalohydrolase K01236 - 3.2.1.141 3.23e-234 743.0
BYD1_k127_5034165_4 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 529.0
BYD1_k127_5034165_5 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003357 505.0
BYD1_k127_5034165_6 PFAM Conserved TM helix repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000001058 217.0
BYD1_k127_5034165_7 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.000000000007915 72.0
BYD1_k127_5143199_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 565.0
BYD1_k127_5143199_1 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009693 243.0
BYD1_k127_5143199_2 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000004884 92.0
BYD1_k127_5148128_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 1.458e-282 876.0
BYD1_k127_5148128_1 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 2.337e-238 749.0
BYD1_k127_5148128_10 Glycosyl transferase family 2 K10012 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003996 466.0
BYD1_k127_5148128_11 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 439.0
BYD1_k127_5148128_12 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000786 439.0
BYD1_k127_5148128_13 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 406.0
BYD1_k127_5148128_14 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 381.0
BYD1_k127_5148128_15 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000007706 216.0
BYD1_k127_5148128_16 Small multidrug resistance - - - 0.0000000000000000000000000000000000000000000000000000484 195.0
BYD1_k127_5148128_17 Histidine kinase - - - 0.000000000000000000000000000000000000000004305 161.0
BYD1_k127_5148128_18 Phasin protein - - - 0.00000000000000000000000000000000001114 142.0
BYD1_k127_5148128_19 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000000008498 138.0
BYD1_k127_5148128_2 Aminotransferase K14260 - 2.6.1.2,2.6.1.66 2.767e-236 737.0
BYD1_k127_5148128_3 homoserine dehydrogenase K00003 - 1.1.1.3 1.006e-234 731.0
BYD1_k127_5148128_4 Threonine synthase K01733 - 4.2.3.1 1.349e-232 727.0
BYD1_k127_5148128_5 GDP-mannose 4,6 dehydratase - - - 2.67e-208 653.0
BYD1_k127_5148128_6 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 598.0
BYD1_k127_5148128_7 Mate efflux family protein K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 563.0
BYD1_k127_5148128_8 PFAM glycosyl transferase family 39 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002818 571.0
BYD1_k127_5148128_9 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 486.0
BYD1_k127_5177010_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1545.0
BYD1_k127_5177010_1 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003881 581.0
BYD1_k127_5177010_10 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000006326 122.0
BYD1_k127_5177010_11 Pilus assembly protein PilX - - - 0.0000000000000000000000004407 113.0
BYD1_k127_5177010_12 type IV pilus modification protein PilV K02671 - - 0.00000000000000811 79.0
BYD1_k127_5177010_13 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000004481 74.0
BYD1_k127_5177010_14 - K03832 - - 0.000000003525 66.0
BYD1_k127_5177010_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004985 457.0
BYD1_k127_5177010_3 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008792 395.0
BYD1_k127_5177010_4 Type IV Pilus-assembly protein W K02672 - - 0.000000000000000000000000000000000000000000000000000000000000000003693 241.0
BYD1_k127_5177010_5 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000000000000000000000000000000000001571 203.0
BYD1_k127_5177010_6 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000001685 189.0
BYD1_k127_5177010_7 Peptidyl-prolyl cis-trans K03774 - 5.2.1.8 0.0000000000000000000000000000000000000000000137 171.0
BYD1_k127_5177010_8 Type II transport protein GspH K08084 - - 0.0000000000000000000000000000114 125.0
BYD1_k127_5177010_9 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.0000000000000000000000000000493 121.0
BYD1_k127_5187164_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 4.067e-212 667.0
BYD1_k127_5187164_1 Pfam Methyltransferase small - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007204 556.0
BYD1_k127_5187164_2 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 366.0
BYD1_k127_5196375_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 3.843e-224 719.0
BYD1_k127_5196375_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005689 526.0
BYD1_k127_5196375_2 mechanosensitive K05802 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 479.0
BYD1_k127_5196375_3 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006848 281.0
BYD1_k127_5196375_4 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001178 282.0
BYD1_k127_5196375_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000212 241.0
BYD1_k127_5196375_6 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes - - - 0.00000000000000000000000000000000000000000000000596 181.0
BYD1_k127_5196375_7 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000245 170.0
BYD1_k127_5205420_0 Putative methyltransferase - - - 1.069e-305 944.0
BYD1_k127_5205420_1 Domain of unknown function (DUF4131) K02238 - - 1.173e-249 792.0
BYD1_k127_5205420_10 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 295.0
BYD1_k127_5205420_11 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000000000009803 178.0
BYD1_k127_5205420_12 proteolysis - - - 0.000000000000000000000000002055 119.0
BYD1_k127_5205420_13 Lipase (class 3) - - - 0.0000000000000000000009966 109.0
BYD1_k127_5205420_14 LTXXQ motif family protein - - - 0.0000000005671 68.0
BYD1_k127_5205420_16 - - - - 0.0000362 57.0
BYD1_k127_5205420_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 4.767e-202 642.0
BYD1_k127_5205420_3 Major facilitator Superfamily K05939 - 2.3.1.40,6.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 600.0
BYD1_k127_5205420_4 Dual specificity phosphatase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 558.0
BYD1_k127_5205420_5 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000832 469.0
BYD1_k127_5205420_6 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 380.0
BYD1_k127_5205420_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 379.0
BYD1_k127_5205420_8 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 301.0
BYD1_k127_5205420_9 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 306.0
BYD1_k127_5208622_0 RNB K01147 - 3.1.13.1 4.555e-258 810.0
BYD1_k127_5208622_1 Aminotransferase K01845 - 5.4.3.8 3.73e-215 674.0
BYD1_k127_5208622_10 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 344.0
BYD1_k127_5208622_11 COG0810 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 313.0
BYD1_k127_5208622_12 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001025 296.0
BYD1_k127_5208622_13 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009201 278.0
BYD1_k127_5208622_14 Uncharacterised protein family (UPF0227) K07000 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000985 254.0
BYD1_k127_5208622_15 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000001166 219.0
BYD1_k127_5208622_16 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000000000000000000000003086 213.0
BYD1_k127_5208622_17 Small Multidrug Resistance protein K11741 - - 0.0000000000000000000000000000000000000000006729 160.0
BYD1_k127_5208622_18 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000001323 159.0
BYD1_k127_5208622_19 Fe-S-cluster oxidoreductase K06940 - - 0.00000000000000000000000000001455 128.0
BYD1_k127_5208622_2 CorA-like Mg2+ transporter protein K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 611.0
BYD1_k127_5208622_3 COG0044 Dihydroorotase and related cyclic amidohydrolases K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 576.0
BYD1_k127_5208622_4 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 554.0
BYD1_k127_5208622_5 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581,K07452,K09384 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 534.0
BYD1_k127_5208622_6 Domain of unknown function (DUF3391) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 494.0
BYD1_k127_5208622_7 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 430.0
BYD1_k127_5208622_8 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 417.0
BYD1_k127_5208622_9 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 407.0
BYD1_k127_5225594_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 488.0
BYD1_k127_5225594_1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657,K07664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 290.0
BYD1_k127_5225594_2 - - - - 0.0000000000000000000000000000000000003205 148.0
BYD1_k127_5271384_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 3.496e-308 970.0
BYD1_k127_5271384_1 chemotaxis protein K03407 - 2.7.13.3 8.916e-280 882.0
BYD1_k127_5271384_10 metal-dependent phosphohydrolase HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000001129 254.0
BYD1_k127_5271384_11 response regulator K03413 - - 0.00000000000000000000000000000000000000000000000000000000000007102 215.0
BYD1_k127_5271384_12 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000000000000000000000000000002255 198.0
BYD1_k127_5271384_13 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000000000000000000000000009099 150.0
BYD1_k127_5271384_15 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.0000000000000000000000000003564 119.0
BYD1_k127_5271384_16 Nucleotidyltransferase substrate binding protein like - - - 0.0007329 49.0
BYD1_k127_5271384_2 Formyl transferase, C-terminal domain K19640 - - 1.8e-265 827.0
BYD1_k127_5271384_3 Belongs to the HypD family K04654 - - 6.624e-210 660.0
BYD1_k127_5271384_4 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 539.0
BYD1_k127_5271384_5 Solute carrier family 35 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004611 429.0
BYD1_k127_5271384_6 methyl-accepting chemotaxis K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 433.0
BYD1_k127_5271384_7 Hydrogenase accessory protein HypB K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 407.0
BYD1_k127_5271384_8 PFAM Peptidase M18, aminopeptidase I K01267 - 3.4.11.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008265 387.0
BYD1_k127_5271384_9 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406,K05875 - - 0.0000000000000000000000000000000000000000000000000000000000000000008491 241.0
BYD1_k127_5287688_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 486.0
BYD1_k127_5287688_1 response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000504 214.0
BYD1_k127_5370684_0 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 450.0
BYD1_k127_5370684_1 PFAM von Willebrand factor type A K02448 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008008 322.0
BYD1_k127_5370684_2 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001459 301.0
BYD1_k127_5370684_3 C4-dicarboxylate ABC transporter, substrate-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002949 288.0
BYD1_k127_5370684_4 4Fe-4S dicluster domain K16887 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001486 264.0
BYD1_k127_5370684_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000000108 177.0
BYD1_k127_5370684_6 addiction module killer protein - - - 0.0000000000000000000000000000000000000000000007894 167.0
BYD1_k127_5370684_7 addiction module antidote protein - - - 0.00000000000000000000000000000000000004909 144.0
BYD1_k127_5370684_8 Domain of unknown function DUF83 K07464 - 3.1.12.1 0.0000000000001113 78.0
BYD1_k127_5407318_0 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 7.396e-228 735.0
BYD1_k127_5407318_1 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003275 471.0
BYD1_k127_5407318_10 protein histidine kinase activity K02584,K03406,K07713,K11908,K12266,K14986,K15836,K21009,K21405 - 2.7.13.3 0.0000000000000000000000000000000002734 155.0
BYD1_k127_5407318_11 STAS domain - - - 0.00000000000000000000004642 102.0
BYD1_k127_5407318_12 Xre family transcriptional regulator - - - 0.0000000000000000000002096 106.0
BYD1_k127_5407318_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 482.0
BYD1_k127_5407318_3 Methyl-accepting chemotaxis protein (MCP) signaling domain K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 389.0
BYD1_k127_5407318_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 336.0
BYD1_k127_5407318_5 response regulator K07689,K07690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001611 267.0
BYD1_k127_5407318_6 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001007 263.0
BYD1_k127_5407318_7 response regulator K07689,K07690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004983 247.0
BYD1_k127_5407318_8 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000000000001124 219.0
BYD1_k127_5407318_9 helix_turn_helix, Lux Regulon K07689,K07690 - - 0.00000000000000000000000000000000000279 147.0
BYD1_k127_5436934_0 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components K06147 - - 2.133e-271 848.0
BYD1_k127_5436934_1 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009163 583.0
BYD1_k127_5436934_2 Cyclic nucleotide-monophosphate binding domain K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001625 251.0
BYD1_k127_5436934_3 ORF6N domain - - - 0.000000000000000000000000000000000000000000000000001324 189.0
BYD1_k127_5436934_4 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - 0.00000000000000000000000002035 122.0
BYD1_k127_5474424_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 1.907e-297 925.0
BYD1_k127_5474424_1 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 1.017e-206 647.0
BYD1_k127_5474424_2 COG1960 Acyl-CoA dehydrogenases - - - 9.913e-200 629.0
BYD1_k127_5474424_3 Enoyl-CoA hydratase/isomerase K13766,K15312 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 336.0
BYD1_k127_5474424_4 DSBA-like thioredoxin domain K14584 - 5.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001565 273.0
BYD1_k127_5474424_5 Large family of predicted nucleotide-binding domains - - - 0.000000000000000000000001566 106.0
BYD1_k127_5474424_6 positive regulation of growth - GO:0008150,GO:0040008,GO:0045927,GO:0048518,GO:0050789,GO:0065007 - 0.00000000000001522 76.0
BYD1_k127_5474665_0 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 1.263e-201 629.0
BYD1_k127_5474665_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006851 608.0
BYD1_k127_5474665_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009692 285.0
BYD1_k127_5504545_0 AAA ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 542.0
BYD1_k127_5504545_1 Acetoacetate decarboxylase (ADC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 489.0
BYD1_k127_5504545_10 - - - - 0.0000000000000001246 85.0
BYD1_k127_5504545_2 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000937 448.0
BYD1_k127_5504545_3 Molybdate transporter of MFS superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 413.0
BYD1_k127_5504545_4 deacetylase K06986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001049 247.0
BYD1_k127_5504545_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000006176 237.0
BYD1_k127_5504545_6 COG0438 Glycosyltransferase K14335 - - 0.0000000000000000000000000000000000000000001212 166.0
BYD1_k127_5504545_7 Protein of unknown function (DUF1272) K09984 - - 0.0000000000000000000000000000000000000001396 151.0
BYD1_k127_5504545_8 - - - - 0.00000000000000000000000000000000001096 141.0
BYD1_k127_5504545_9 OmpA-like transmembrane domain K03286 - - 0.000000000000000000000001446 110.0
BYD1_k127_5573202_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1298.0
BYD1_k127_5573202_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 5.295e-249 772.0
BYD1_k127_5573202_10 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K03472 - 1.2.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 492.0
BYD1_k127_5573202_11 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004622 488.0
BYD1_k127_5573202_12 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008358 486.0
BYD1_k127_5573202_13 Transcriptional regulator K13634 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 452.0
BYD1_k127_5573202_14 Sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 439.0
BYD1_k127_5573202_15 PFAM MCP methyltransferase CheR-type K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 430.0
BYD1_k127_5573202_16 glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 394.0
BYD1_k127_5573202_17 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 389.0
BYD1_k127_5573202_18 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 366.0
BYD1_k127_5573202_19 electron transfer activity K00428 GO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005488,GO:0006091,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009061,GO:0009636,GO:0009987,GO:0010035,GO:0015980,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017144,GO:0019645,GO:0020037,GO:0022900,GO:0022904,GO:0042221,GO:0042493,GO:0042542,GO:0042743,GO:0044237,GO:0045333,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0070887,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1990748 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007735 360.0
BYD1_k127_5573202_2 O-acetylhomoserine K01740 - 2.5.1.49 2.317e-247 767.0
BYD1_k127_5573202_20 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 347.0
BYD1_k127_5573202_21 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 331.0
BYD1_k127_5573202_22 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005555 332.0
BYD1_k127_5573202_23 50S ribosomal protein L4 K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 331.0
BYD1_k127_5573202_24 Flavodoxin-like fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 303.0
BYD1_k127_5573202_25 Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007807 291.0
BYD1_k127_5573202_26 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003527 278.0
BYD1_k127_5573202_27 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004441 278.0
BYD1_k127_5573202_28 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007619 273.0
BYD1_k127_5573202_29 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003363 265.0
BYD1_k127_5573202_3 Sulfite reductase K00381 - 1.8.1.2 4.669e-240 754.0
BYD1_k127_5573202_30 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001991 248.0
BYD1_k127_5573202_31 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000000000000009778 235.0
BYD1_k127_5573202_32 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000002957 240.0
BYD1_k127_5573202_33 binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000000000000000004855 231.0
BYD1_k127_5573202_34 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000004117 230.0
BYD1_k127_5573202_35 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000000000000000002461 224.0
BYD1_k127_5573202_36 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000000000000000000000000000000002754 219.0
BYD1_k127_5573202_37 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000000006255 209.0
BYD1_k127_5573202_38 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000004352 202.0
BYD1_k127_5573202_39 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000000000000000107 201.0
BYD1_k127_5573202_4 Putative diguanylate phosphodiesterase - - - 4.693e-231 749.0
BYD1_k127_5573202_40 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000000000000000004197 197.0
BYD1_k127_5573202_41 Bacterial protein of unknown function (DUF934) - - - 0.0000000000000000000000000000000000000000000000000001041 193.0
BYD1_k127_5573202_42 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000000000000000000259 183.0
BYD1_k127_5573202_43 - - - - 0.000000000000000000000000000000000000000000000000005852 186.0
BYD1_k127_5573202_44 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000002625 183.0
BYD1_k127_5573202_45 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000000003136 179.0
BYD1_k127_5573202_46 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000000000000405 180.0
BYD1_k127_5573202_47 MlaC protein K07323 - - 0.0000000000000000000000000000000000000000000001239 177.0
BYD1_k127_5573202_48 ABC-type polar amino acid transport system, ATPase component K10004 - - 0.0000000000000000000000000000000000000000000003406 167.0
BYD1_k127_5573202_49 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.00000000000000000000000000000000000000002274 155.0
BYD1_k127_5573202_5 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 1.421e-199 640.0
BYD1_k127_5573202_50 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000001901 160.0
BYD1_k127_5573202_51 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000003108 149.0
BYD1_k127_5573202_52 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000000007831 143.0
BYD1_k127_5573202_53 enzyme involved in biosynthesis of extracellular polysaccharides - - - 0.00000000000000000000000000000003058 136.0
BYD1_k127_5573202_54 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000000002019 122.0
BYD1_k127_5573202_55 Ribosomal protein L30 K02907 - - 0.0000000000000000000000005965 104.0
BYD1_k127_5573202_56 Disulfide bond formation protein DsbB K03611 - - 0.0000000000000000009225 92.0
BYD1_k127_5573202_57 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000000302 85.0
BYD1_k127_5573202_58 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000004515 83.0
BYD1_k127_5573202_59 Phasin protein - - - 0.0000000000002807 77.0
BYD1_k127_5573202_6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 577.0
BYD1_k127_5573202_60 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000003924 68.0
BYD1_k127_5573202_61 - - - - 0.0000004924 60.0
BYD1_k127_5573202_7 PAC sensor-containing diguanylate cyclase phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006748 586.0
BYD1_k127_5573202_8 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 548.0
BYD1_k127_5573202_9 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 539.0
BYD1_k127_5632393_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1093.0
BYD1_k127_5632393_1 Protein of unknown function - - - 1.165e-320 1057.0
BYD1_k127_5632393_2 modulator of DNA gyrase K03568 - - 4.772e-239 761.0
BYD1_k127_5632393_3 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006248 567.0
BYD1_k127_5632393_4 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 384.0
BYD1_k127_5632393_5 methyltransferase activity K21310 - 2.1.1.334 0.000000000000000000000000000000000000000000000000000000000000005288 228.0
BYD1_k127_6105737_0 AcrB/AcrD/AcrF family - - - 0.0 1396.0
BYD1_k127_6105737_1 Belongs to the mannose-6-phosphate isomerase type 2 family K00971,K16011 - 2.7.7.13,5.3.1.8 5.425e-204 648.0
BYD1_k127_6105737_10 3-Deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006885 457.0
BYD1_k127_6105737_11 Beta-eliminating lyase K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 453.0
BYD1_k127_6105737_12 HMGL-like K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 450.0
BYD1_k127_6105737_13 COG1538 Outer membrane protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 458.0
BYD1_k127_6105737_14 TIGRFAM Undecaprenyl-phosphate galactose phosphotransferase, WbaP K00996 - 2.7.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003374 439.0
BYD1_k127_6105737_15 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006959 394.0
BYD1_k127_6105737_16 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000925 374.0
BYD1_k127_6105737_17 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000663 355.0
BYD1_k127_6105737_18 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005894 355.0
BYD1_k127_6105737_19 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 336.0
BYD1_k127_6105737_2 UDP binding domain K02474 - - 1.948e-200 632.0
BYD1_k127_6105737_20 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 304.0
BYD1_k127_6105737_21 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 306.0
BYD1_k127_6105737_22 Catalyzes the synthesis of activated sulfate K00860 - 2.7.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008977 288.0
BYD1_k127_6105737_23 HlyD family secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 301.0
BYD1_k127_6105737_24 PFAM sulfotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001131 266.0
BYD1_k127_6105737_25 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003265 267.0
BYD1_k127_6105737_26 Macrocin-O-methyltransferase (TylF) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003383 254.0
BYD1_k127_6105737_27 Heptaprenyl diphosphate synthase component I K00805 - 2.5.1.30 0.0000000000000000000000000000000000000000000000000000000000000001254 225.0
BYD1_k127_6105737_28 - - - - 0.00000000000000000000000000000000000000000000000000000000000001875 222.0
BYD1_k127_6105737_29 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000004564 218.0
BYD1_k127_6105737_3 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 584.0
BYD1_k127_6105737_30 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000004585 202.0
BYD1_k127_6105737_31 Transcriptional regulator K09017 - - 0.0000000000000000000000000000000000000000000000000001658 192.0
BYD1_k127_6105737_32 SIS domain K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000001343 173.0
BYD1_k127_6105737_33 Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway K03181 - 4.1.3.40 0.00000000000000000000000000000000000000000007054 167.0
BYD1_k127_6105737_34 PFAM Rhodanese domain protein - - - 0.000000000000000000000000000000000000000004061 157.0
BYD1_k127_6105737_35 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000001128 160.0
BYD1_k127_6105737_36 Methyltransferase domain - - - 0.000000000000000000000000000000000000004335 152.0
BYD1_k127_6105737_37 NusG domain II - - - 0.000000000000000000000000000000000000004454 151.0
BYD1_k127_6105737_38 Cupin - - - 0.0000000000000000000000000000000000002964 143.0
BYD1_k127_6105737_39 Glycosyl Transferase K07011 - - 0.00000000000000000000000000000003344 134.0
BYD1_k127_6105737_4 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 546.0
BYD1_k127_6105737_40 PFAM transport-associated K04065 - - 0.000000000000000000000005619 106.0
BYD1_k127_6105737_41 Belongs to the 4-oxalocrotonate tautomerase family K01821 - 5.3.2.6 0.00000000000000000000001749 106.0
BYD1_k127_6105737_42 PFAM Glutaredoxin - - - 0.0000000000000000000002062 103.0
BYD1_k127_6105737_43 bacterial OsmY and nodulation domain - - - 0.0000000000000000000272 98.0
BYD1_k127_6105737_44 UDP binding domain K02474 - - 0.00000000000000000005522 96.0
BYD1_k127_6105737_45 Protein of unknown function (DUF3309) - - - 0.0000000000000000001822 91.0
BYD1_k127_6105737_46 Transposase DDE domain group 1 - - - 0.0000000000000000005476 95.0
BYD1_k127_6105737_47 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000001233 81.0
BYD1_k127_6105737_48 -O-antigen K02847 - - 0.0000000000002716 83.0
BYD1_k127_6105737_49 - - - - 0.00000005162 62.0
BYD1_k127_6105737_5 epimerase dehydratase K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 520.0
BYD1_k127_6105737_50 PFAM Glutaredoxin - - - 0.000001948 51.0
BYD1_k127_6105737_51 GtrA-like protein - - - 0.000005504 54.0
BYD1_k127_6105737_52 EpsG family - - - 0.00002691 55.0
BYD1_k127_6105737_53 Protein of unknown function (DUF2917) - - - 0.00004433 55.0
BYD1_k127_6105737_54 Polysaccharide biosynthesis protein - - - 0.0001651 54.0
BYD1_k127_6105737_55 epimerase dehydratase K08679 - 5.1.3.6 0.0001815 45.0
BYD1_k127_6105737_6 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 499.0
BYD1_k127_6105737_7 NAD(P)H-binding K01784,K12448 - 5.1.3.2,5.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 480.0
BYD1_k127_6105737_8 Putative zinc binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 482.0
BYD1_k127_6105737_9 epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 459.0
BYD1_k127_6147232_0 - Amino acid transport and metabolism K01953 - 6.3.5.4 3.128e-228 728.0
BYD1_k127_6147232_1 Heparinase II/III N-terminus - - - 1.551e-215 688.0
BYD1_k127_6147232_10 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001081 283.0
BYD1_k127_6147232_11 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007517 248.0
BYD1_k127_6147232_12 Glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000006759 218.0
BYD1_k127_6147232_13 Mediates the transbilayer movement of Und-PP-GlcNAc- ManNAcA-Fuc4NAc (lipid III) from the inner to the outer leaflet of the cytoplasmic membrane during the assembly of enterobacterial common antigen (ECA) K03328,K16693 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000001664 207.0
BYD1_k127_6147232_14 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000000000000000000000000008141 193.0
BYD1_k127_6147232_15 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000003598 198.0
BYD1_k127_6147232_16 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000003178 158.0
BYD1_k127_6147232_17 PilZ domain - - - 0.0000006902 57.0
BYD1_k127_6147232_18 PFAM Uncharacterised protein family UPF0150 - - - 0.0001686 48.0
BYD1_k127_6147232_2 carbohydrate transport K02027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 576.0
BYD1_k127_6147232_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 589.0
BYD1_k127_6147232_4 Iron-containing alcohol dehydrogenase K13954 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 451.0
BYD1_k127_6147232_5 PFAM NAD dependent epimerase dehydratase family K01784,K02473 - 5.1.3.2,5.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000903 445.0
BYD1_k127_6147232_6 SMART ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 356.0
BYD1_k127_6147232_7 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 333.0
BYD1_k127_6147232_8 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004511 306.0
BYD1_k127_6147232_9 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 314.0
BYD1_k127_6191932_0 Succinyl-CoA ligase like flavodoxin domain - - - 0.0 1532.0
BYD1_k127_6191932_1 Belongs to the aconitase IPM isomerase family K01682 - 4.2.1.3,4.2.1.99 0.0 1436.0
BYD1_k127_6191932_2 PFAM Isocitrate dehydrogenase NADP-dependent monomeric type K00031 - 1.1.1.42 0.0 1213.0
BYD1_k127_6191932_3 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 3.797e-315 972.0
BYD1_k127_6191932_4 ATP citrate lyase citrate-binding - - - 9.161e-230 716.0
BYD1_k127_6191932_5 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005095 425.0
BYD1_k127_6191932_6 4Fe-4S dicluster domain K16950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000601 394.0
BYD1_k127_6191932_7 2Fe-2S iron-sulfur cluster binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 347.0
BYD1_k127_6191932_8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus - - - 0.00000000000000000000000000000000000000000000000000000000002801 207.0
BYD1_k127_6382588_0 Belongs to the thiolase family K00626 - 2.3.1.9 3.364e-215 676.0
BYD1_k127_6382588_1 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000082 362.0
BYD1_k127_6423179_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006787 574.0
BYD1_k127_6423179_1 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 475.0
BYD1_k127_6423179_2 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 366.0
BYD1_k127_6447625_0 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0 1057.0
BYD1_k127_6447625_1 fad dependent oxidoreductase K07137 - - 7.813e-297 917.0
BYD1_k127_6447625_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003114 528.0
BYD1_k127_6447625_3 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 454.0
BYD1_k127_6447625_4 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 327.0
BYD1_k127_6624011_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 2428.0
BYD1_k127_6624011_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.0 1547.0
BYD1_k127_6624011_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 447.0
BYD1_k127_6624011_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001615 272.0
BYD1_k127_6624011_4 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000000000000000000001269 241.0
BYD1_k127_6624011_5 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00000000000001845 79.0
BYD1_k127_6630402_0 Putative diguanylate phosphodiesterase - - - 8.371e-292 920.0
BYD1_k127_6630402_1 Carbamoyltransferase C-terminus K00612 - - 7.211e-273 849.0
BYD1_k127_6630402_10 PFAM Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 422.0
BYD1_k127_6630402_11 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 362.0
BYD1_k127_6630402_12 glycosyl transferase family 2 K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003875 354.0
BYD1_k127_6630402_13 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 335.0
BYD1_k127_6630402_14 Response regulators consisting of a CheY-like receiver domain and a - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 310.0
BYD1_k127_6630402_15 Dihaem cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002016 273.0
BYD1_k127_6630402_16 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001501 270.0
BYD1_k127_6630402_17 Domain of unknown function (DUF1924) - - - 0.00000000000000000000000000000000000000000000000000000000005134 207.0
BYD1_k127_6630402_18 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000000009007 188.0
BYD1_k127_6630402_19 - - - - 0.000000000000000000000000000000000001429 148.0
BYD1_k127_6630402_2 Sulfate transporter antisigma-factor antagonist STAS K03321 - - 4.795e-244 782.0
BYD1_k127_6630402_20 Peptidase S24-like - - - 0.0000000000000000000000000000002585 131.0
BYD1_k127_6630402_21 Peptidase propeptide and YPEB domain - - - 0.0000000000000000000000001591 110.0
BYD1_k127_6630402_22 - - - - 0.0000000000008761 76.0
BYD1_k127_6630402_3 ferric reductase - - - 4.414e-204 658.0
BYD1_k127_6630402_4 AsmA family K07289,K07290 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 546.0
BYD1_k127_6630402_5 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 469.0
BYD1_k127_6630402_6 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 459.0
BYD1_k127_6630402_7 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 450.0
BYD1_k127_6630402_8 histidine kinase HAMP region domain protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 450.0
BYD1_k127_6630402_9 cation diffusion facilitator family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000401 418.0
BYD1_k127_6658859_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 7.083e-288 897.0
BYD1_k127_6658859_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009146 442.0
BYD1_k127_6689704_0 methyltransferase - - - 2.44e-283 909.0
BYD1_k127_6689704_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 1.457e-230 719.0
BYD1_k127_6689704_10 pfkB family carbohydrate kinase K03272,K21344 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 450.0
BYD1_k127_6689704_11 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 433.0
BYD1_k127_6689704_12 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516 416.0
BYD1_k127_6689704_13 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 401.0
BYD1_k127_6689704_14 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 374.0
BYD1_k127_6689704_15 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 374.0
BYD1_k127_6689704_16 Pfam:UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 361.0
BYD1_k127_6689704_17 Hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 355.0
BYD1_k127_6689704_18 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 345.0
BYD1_k127_6689704_19 SCO1/SenC K07152 GO:0000041,GO:0003674,GO:0003824,GO:0004601,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016020,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0019866,GO:0022607,GO:0030001,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034622,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051775,GO:0051920,GO:0055114,GO:0065003,GO:0070887,GO:0071840,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006149 279.0
BYD1_k127_6689704_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 5.512e-203 634.0
BYD1_k127_6689704_20 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001275 249.0
BYD1_k127_6689704_21 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000006143 247.0
BYD1_k127_6689704_22 Belongs to the DnaA family K10763 - - 0.000000000000000000000000000000000000000000000000000000000000000002432 233.0
BYD1_k127_6689704_23 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000000000000000000000000004152 211.0
BYD1_k127_6689704_24 Putative member of DMT superfamily (DUF486) K09922 - - 0.00000000000000000000000000000000000000000000000000001234 195.0
BYD1_k127_6689704_25 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000000000001487 196.0
BYD1_k127_6689704_26 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000005617 171.0
BYD1_k127_6689704_27 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000001338 154.0
BYD1_k127_6689704_28 PFAM pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 - - 0.000000000000000000000000000000000000002482 159.0
BYD1_k127_6689704_29 - - - - 0.00000000000000000000000000000000000002004 150.0
BYD1_k127_6689704_3 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 8.278e-197 622.0
BYD1_k127_6689704_30 Copper chaperone PCu(A)C K09796 - - 0.0000000000000000000000000000000000009695 147.0
BYD1_k127_6689704_31 Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility - - - 0.0000000000000000000000000000003487 136.0
BYD1_k127_6689704_32 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000000000000003202 86.0
BYD1_k127_6689704_33 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000001291 80.0
BYD1_k127_6689704_4 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 565.0
BYD1_k127_6689704_5 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 562.0
BYD1_k127_6689704_6 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 590.0
BYD1_k127_6689704_7 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 530.0
BYD1_k127_6689704_8 Histidine kinase K05962,K07716 - 2.7.13.1,2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 539.0
BYD1_k127_6689704_9 Cache_2 K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 535.0
BYD1_k127_67055_0 CATALYZES THE OXIDATIVE DECARBOXYLATION OF GLUTARYL-COA TO CROTONYL-COA AND CO(2) IN THE DEGRADATIVE PATHWAY OF L-LYSINE L-HYDROXYLYSINE AND L-TRYPTOPHAN METABOLISM. IT USES ELECTRON TRANSFER FLAVOPROTEIN AS ITS ELECTRON ACCEPTOR. Entry name K00252 - 1.3.8.6 1.695e-208 655.0
BYD1_k127_67055_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 564.0
BYD1_k127_67055_10 PFAM Aminotransferase class I and II K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 357.0
BYD1_k127_67055_11 Bacterial transcriptional repressor C-terminal - - - 0.000000000000000000000000000000000000000000000000000001835 201.0
BYD1_k127_67055_12 Domain of unknown function (DUF4154) - - - 0.000000000000000000000000000000000000002938 169.0
BYD1_k127_67055_2 TonB-dependent receptor K02014,K16089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 550.0
BYD1_k127_67055_3 TonB-dependent receptor K02014,K16089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 527.0
BYD1_k127_67055_4 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 495.0
BYD1_k127_67055_5 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 460.0
BYD1_k127_67055_6 Periplasmic sensor domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 469.0
BYD1_k127_67055_7 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 432.0
BYD1_k127_67055_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 436.0
BYD1_k127_67055_9 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003675 412.0
BYD1_k127_6712919_0 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 2.339e-204 640.0
BYD1_k127_6712919_1 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005144 278.0
BYD1_k127_6712919_2 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000007049 151.0
BYD1_k127_674044_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 5.477e-294 911.0
BYD1_k127_674044_1 helicase K03722 - 3.6.4.12 4.449e-276 863.0
BYD1_k127_674044_10 COG2202 FOG PAS PAC domain K03776 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007103 452.0
BYD1_k127_674044_11 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 440.0
BYD1_k127_674044_12 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003657 425.0
BYD1_k127_674044_13 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 419.0
BYD1_k127_674044_14 abc transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 387.0
BYD1_k127_674044_15 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs K05541 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006085 385.0
BYD1_k127_674044_16 Domain of unknown function (DUF4962) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009593 366.0
BYD1_k127_674044_17 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 329.0
BYD1_k127_674044_18 Belongs to the UPF0502 family K09915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002083 267.0
BYD1_k127_674044_19 Crp Fnr family transcriptional regulator K21563 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001186 258.0
BYD1_k127_674044_2 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 3.235e-267 838.0
BYD1_k127_674044_20 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.00000000000000000000000000000000000000000000000000000000000000000000161 239.0
BYD1_k127_674044_21 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000004545 216.0
BYD1_k127_674044_22 histidine kinase HAMP region domain protein K03406 - - 0.0000000000000000000000000000000000000000000000000000006307 209.0
BYD1_k127_674044_23 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.000000000000000000000000002571 120.0
BYD1_k127_674044_24 - - - - 0.000000000000000000000000002595 113.0
BYD1_k127_674044_25 chitin binding K01179 - 3.2.1.4 0.00000000000000000000001 119.0
BYD1_k127_674044_26 Hexapeptide repeat of succinyl-transferase K00640 - 2.3.1.30 0.0000000000000000000003334 105.0
BYD1_k127_674044_27 Acyl carrier protein - - - 0.000000000000000007118 87.0
BYD1_k127_674044_28 Hemerythrin HHE cation binding domain K07216 - - 0.0000000000003178 79.0
BYD1_k127_674044_29 TIGRFAM Serine O-acetyltransferase K00640 - 2.3.1.30 0.00000000005832 71.0
BYD1_k127_674044_3 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.302e-242 755.0
BYD1_k127_674044_4 Phosphopantetheine attachment site - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 609.0
BYD1_k127_674044_5 AMP-binding enzyme C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 538.0
BYD1_k127_674044_6 NMT1-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 544.0
BYD1_k127_674044_7 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 512.0
BYD1_k127_674044_8 Molybdenum cofactor synthesis K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 490.0
BYD1_k127_674044_9 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004495 483.0
BYD1_k127_6744729_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 3.349e-228 730.0
BYD1_k127_6744729_1 Nitrite and sulphite reductase 4Fe-4S domain K11180 - 1.8.99.5 8.236e-218 681.0
BYD1_k127_6744729_10 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 301.0
BYD1_k127_6744729_11 chemotaxis, protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002421 252.0
BYD1_k127_6744729_12 conserved protein involved in intracellular sulfur reduction K07235 GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019417,GO:0032991,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0097163,GO:0140104,GO:1901360,GO:1902494,GO:1990228,GO:1990234 - 0.000000000000000000000000000000000000000000000000000000000000000000001236 237.0
BYD1_k127_6744729_13 DsrC like protein K11179 - - 0.00000000000000000000000000000000000000000000000000007751 188.0
BYD1_k127_6744729_14 Belongs to the DsrF TusC family K07236 - - 0.00000000000000000000000000000000000000000000000001056 182.0
BYD1_k127_6744729_15 Phage derived protein Gp49-like (DUF891) - - - 0.00000000000000000000000000000000000000000004866 162.0
BYD1_k127_6744729_16 - - - - 0.00000000000000000000000000000000000000002849 161.0
BYD1_k127_6744729_17 DsrC like protein K11179 - - 0.000000000000000000000000000000000000001247 149.0
BYD1_k127_6744729_18 DsrH like protein K07237 - - 0.00000000000000000000000000000004324 136.0
BYD1_k127_6744729_19 Cas6 Crispr - - - 0.0000000000000000000000000003532 124.0
BYD1_k127_6744729_2 diguanylate cyclase - - - 2.293e-200 639.0
BYD1_k127_6744729_20 Helix-turn-helix domain - - - 0.0000000000000000000000126 106.0
BYD1_k127_6744729_21 - - - - 0.0000000000000000007198 88.0
BYD1_k127_6744729_22 PFAM Nitrate reductase gamma subunit - - - 0.0000000000000001301 80.0
BYD1_k127_6744729_23 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000001049 85.0
BYD1_k127_6744729_3 Nitrite and sulphite reductase 4Fe-4S domain K11181 - 1.8.99.5 9.964e-195 612.0
BYD1_k127_6744729_4 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004469 615.0
BYD1_k127_6744729_5 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000823 532.0
BYD1_k127_6744729_6 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005771 545.0
BYD1_k127_6744729_7 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 436.0
BYD1_k127_6744729_8 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008993 429.0
BYD1_k127_6744729_9 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 353.0
BYD1_k127_6757040_0 TonB-dependent Receptor Plug K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 418.0
BYD1_k127_6757040_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 371.0
BYD1_k127_6757040_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007509 352.0
BYD1_k127_6757040_3 Histidine kinase K20975 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 319.0
BYD1_k127_6757040_4 - - - - 0.0000000000000000000000000000000000000000000001617 187.0
BYD1_k127_6757040_5 Domain of unknown function (DUF4154) - - - 0.00000000000000178 83.0
BYD1_k127_6757040_6 Radical SAM - - - 0.00000001266 61.0
BYD1_k127_6761213_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009166 401.0
BYD1_k127_6761213_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000004032 153.0
BYD1_k127_6761213_2 - - - - 0.00000000000000000000000002672 116.0
BYD1_k127_6835020_0 Nitrogenase component 1 type Oxidoreductase K02592 - - 3.96e-208 657.0
BYD1_k127_6835020_1 Putative zinc- or iron-chelating domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001361 259.0
BYD1_k127_6835020_2 Belongs to the UPF0225 family K09858 - - 0.000000000000000000000000000000000000000000000000000000000000000000001018 241.0
BYD1_k127_6835020_3 Protein of unknown function, DUF269 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001817 238.0
BYD1_k127_6835020_4 Pfam Dinitrogenase iron-molybdenum cofactor K02596 - - 0.0000000000000000000000000000000000000000000001936 174.0
BYD1_k127_6835020_5 4Fe-4S double cluster binding domain - - - 0.0000000000000000000000000000005968 123.0
BYD1_k127_6835020_6 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000001412 49.0
BYD1_k127_6962838_0 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 604.0
BYD1_k127_6962838_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000008748 150.0
BYD1_k127_6990073_0 Rieske [2Fe-2S] domain K09471 - - 4.399e-234 735.0
BYD1_k127_6990073_1 filamentation induced by cAMP protein Fic - - - 1.223e-204 645.0
BYD1_k127_6990073_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 376.0
BYD1_k127_6990073_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 301.0
BYD1_k127_6990073_4 Signal transduction histidine kinase K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000004027 235.0
BYD1_k127_6990073_5 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000385 225.0
BYD1_k127_6990073_6 COG0642 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000008455 242.0
BYD1_k127_6990073_7 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000004424 152.0
BYD1_k127_6990073_8 HsdM N-terminal domain K03427 - 2.1.1.72 0.0000001105 55.0
BYD1_k127_7059280_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0 1088.0
BYD1_k127_7059280_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 2.328e-232 725.0
BYD1_k127_7059280_10 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 282.0
BYD1_k127_7059280_11 had-superfamily hydrolase subfamily ia, variant 3 K07025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002848 281.0
BYD1_k127_7059280_12 Bacterial regulatory proteins, tetR family K05501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002701 251.0
BYD1_k127_7059280_13 NAD+ binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001466 272.0
BYD1_k127_7059280_14 NUDIX domain K08310 - 3.6.1.67 0.00000000000000000000000000000000000000000000000000000005291 209.0
BYD1_k127_7059280_15 NAD+ binding - - - 0.000000000000000000000000000000000000000000000000003124 200.0
BYD1_k127_7059280_16 Barstar (barnase inhibitor) - - - 0.0000000000000000000000000000000000002077 145.0
BYD1_k127_7059280_17 Ribonuclease K01167 - 3.1.27.3 0.000000000000000000000000000000000002937 139.0
BYD1_k127_7059280_18 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000000000000000000000000000000000008987 143.0
BYD1_k127_7059280_19 Putative regulatory protein - - - 0.00000000000000000000000000000000002749 136.0
BYD1_k127_7059280_2 type II secretion system protein K02653 - - 4.443e-197 622.0
BYD1_k127_7059280_20 Helix-turn-helix - - - 0.0000000000000000000000000000000001832 136.0
BYD1_k127_7059280_22 PFAM helix-turn-helix domain protein - - - 0.0000000000000000002499 93.0
BYD1_k127_7059280_23 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0001545 47.0
BYD1_k127_7059280_3 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 559.0
BYD1_k127_7059280_4 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 512.0
BYD1_k127_7059280_5 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 512.0
BYD1_k127_7059280_6 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 436.0
BYD1_k127_7059280_7 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 337.0
BYD1_k127_7059280_8 Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 329.0
BYD1_k127_7059280_9 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 285.0
BYD1_k127_7121516_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06020 - 3.6.3.25 1.239e-312 962.0
BYD1_k127_7121516_1 serine threonine protein kinase - - - 3.925e-291 915.0
BYD1_k127_7121516_10 heat shock protein DnaJ K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002998 500.0
BYD1_k127_7121516_11 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 482.0
BYD1_k127_7121516_12 Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity K14540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 457.0
BYD1_k127_7121516_13 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 415.0
BYD1_k127_7121516_14 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 366.0
BYD1_k127_7121516_15 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006095 348.0
BYD1_k127_7121516_16 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 336.0
BYD1_k127_7121516_17 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009269 329.0
BYD1_k127_7121516_18 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 311.0
BYD1_k127_7121516_19 Pseudouridine synthase K06175 - 5.4.99.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003683 306.0
BYD1_k127_7121516_2 Peptidase U32 K08303 - - 8.816e-273 852.0
BYD1_k127_7121516_20 pfam abc K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 304.0
BYD1_k127_7121516_21 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000399 261.0
BYD1_k127_7121516_22 Thioesterase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004153 269.0
BYD1_k127_7121516_23 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005151 242.0
BYD1_k127_7121516_24 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000000006145 231.0
BYD1_k127_7121516_25 Glycine cleavage system regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000005243 221.0
BYD1_k127_7121516_26 lipid catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000004084 238.0
BYD1_k127_7121516_27 PAC sensor signal transduction histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000003244 202.0
BYD1_k127_7121516_28 Hsp20/alpha crystallin family - - - 0.000000000000000000000000000000000000000000000004868 178.0
BYD1_k127_7121516_29 MerR HTH family regulatory protein - - - 0.00000000000000000000000000000000000001299 151.0
BYD1_k127_7121516_3 TonB dependent receptor K02014 - - 8.415e-265 833.0
BYD1_k127_7121516_30 - - - - 0.0000000000000000000000002332 110.0
BYD1_k127_7121516_31 diguanylate cyclase (GGDEF) domain - - - 0.00000000000000000000007898 115.0
BYD1_k127_7121516_32 Protein of unknown function (DUF465) - - - 0.0000000000000000000722 90.0
BYD1_k127_7121516_33 SlyX - - - 0.00000000000002883 85.0
BYD1_k127_7121516_34 Protein of unknown function (DUF3567) - - - 0.000000000004053 68.0
BYD1_k127_7121516_4 Thiamine pyrophosphate enzyme, N-terminal TPP binding K00156,K01652 - 1.2.5.1,2.2.1.6 3.202e-255 800.0
BYD1_k127_7121516_5 TonB dependent receptor K02014 - - 4.091e-253 798.0
BYD1_k127_7121516_6 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.924e-236 736.0
BYD1_k127_7121516_7 TonB dependent receptor K02014 - - 8.865e-235 745.0
BYD1_k127_7121516_8 Cytochrome c bacterial - - - 2.406e-210 668.0
BYD1_k127_7121516_9 Belongs to the methyltransferase superfamily K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002008 514.0
BYD1_k127_7139072_0 Domain of unknown function (DUF4172) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 594.0
BYD1_k127_7139072_1 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 520.0
BYD1_k127_7139072_10 pyrroline-5-carboxylate reductase activity K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000004373 250.0
BYD1_k127_7139072_11 Nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008896 252.0
BYD1_k127_7139072_12 Putative FMN-binding domain K07734 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001216 244.0
BYD1_k127_7139072_13 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000004704 246.0
BYD1_k127_7139072_14 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000005711 194.0
BYD1_k127_7139072_15 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.00000000000000000000000000000000000000000000000000006342 190.0
BYD1_k127_7139072_16 DGC domain - - - 0.000000000000000000000000000000000000000000005716 170.0
BYD1_k127_7139072_17 - - - - 0.0000000000000000000000000000000000000001276 165.0
BYD1_k127_7139072_18 - - - - 0.000000000000000000000000000000000000002238 164.0
BYD1_k127_7139072_19 part of a sulfur-relay system K11179 - - 0.00000000000000000000000000000000000001051 148.0
BYD1_k127_7139072_2 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006548 486.0
BYD1_k127_7139072_20 Histidine kinase - - - 0.000000000000000000000000000000000002823 145.0
BYD1_k127_7139072_21 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000006864 144.0
BYD1_k127_7139072_23 Thioredoxin domain - - - 0.000000000000000000000000000003656 120.0
BYD1_k127_7139072_24 DsrC like protein - - - 0.00000000000000000000000000001494 126.0
BYD1_k127_7139072_25 Domain of unknown function (DUF2703) - - - 0.0000000000000000000000000004359 123.0
BYD1_k127_7139072_26 - - - - 0.00000000000000000000000004136 120.0
BYD1_k127_7139072_27 Protein of unknown function (DUF2892) - - - 0.000000000000000000004305 94.0
BYD1_k127_7139072_28 ECF sigma factor K03088 - - 0.0000000000000000719 94.0
BYD1_k127_7139072_29 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0001101,GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009410,GO:0009415,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042221,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.0000000000000005978 89.0
BYD1_k127_7139072_3 Pfam:Gp37_Gp68 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 402.0
BYD1_k127_7139072_30 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000004152 55.0
BYD1_k127_7139072_4 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 352.0
BYD1_k127_7139072_5 Short-chain dehydrogenase reductase Sdr - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 346.0
BYD1_k127_7139072_6 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007272 294.0
BYD1_k127_7139072_7 PFAM Conserved TM helix repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 292.0
BYD1_k127_7139072_8 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005562 274.0
BYD1_k127_7139072_9 Cation efflux family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009441 255.0
BYD1_k127_7153126_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 1.193e-204 646.0
BYD1_k127_7153126_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001909 260.0
BYD1_k127_7283156_0 Sulfate transporter antisigma-factor antagonist STAS - - - 2.14e-291 910.0
BYD1_k127_7283156_1 Proton-conducting membrane transporter - - - 1.006e-272 854.0
BYD1_k127_7283156_2 Sigma-54 interaction domain - - - 2.093e-235 734.0
BYD1_k127_7283156_3 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 460.0
BYD1_k127_7283156_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 410.0
BYD1_k127_7335544_0 Carboxylesterase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007455 464.0
BYD1_k127_7335544_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 410.0
BYD1_k127_7335544_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 400.0
BYD1_k127_7335544_3 Glutamyl-tRNA amidotransferase K09117 - - 0.00000000000000000000000000000000000000000000001744 175.0
BYD1_k127_7343284_0 Oligopeptidase K01414 - 3.4.24.70 0.0 1045.0
BYD1_k127_7343284_1 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 4.16e-230 759.0
BYD1_k127_7343284_10 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 412.0
BYD1_k127_7343284_11 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 373.0
BYD1_k127_7343284_12 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 352.0
BYD1_k127_7343284_13 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 334.0
BYD1_k127_7343284_14 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 319.0
BYD1_k127_7343284_15 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 314.0
BYD1_k127_7343284_16 Pfam Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000004116 188.0
BYD1_k127_7343284_17 Phosphate-starvation-inducible E - - - 0.000000000000000000000000000000000001337 145.0
BYD1_k127_7343284_18 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000001596 123.0
BYD1_k127_7343284_19 Protein of unknown function (DUF2892) - - - 0.00000000000000000000000001349 109.0
BYD1_k127_7343284_2 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 4.665e-226 713.0
BYD1_k127_7343284_20 Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second- messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a - - - 0.00000000000000000000000004401 112.0
BYD1_k127_7343284_21 - - - - 0.00001321 49.0
BYD1_k127_7343284_3 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 3.108e-205 648.0
BYD1_k127_7343284_4 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 4.002e-196 614.0
BYD1_k127_7343284_5 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 604.0
BYD1_k127_7343284_6 aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 615.0
BYD1_k127_7343284_7 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 515.0
BYD1_k127_7343284_8 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 502.0
BYD1_k127_7343284_9 SAICAR synthetase K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 440.0
BYD1_k127_7371081_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006985 588.0
BYD1_k127_7371081_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 389.0
BYD1_k127_7371081_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000000000000000004293 206.0
BYD1_k127_7371081_3 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000000000004209 100.0
BYD1_k127_7386904_0 Belongs to the aconitase IPM isomerase family K01682 - 4.2.1.3,4.2.1.99 0.0 1533.0
BYD1_k127_7386904_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.0 1014.0
BYD1_k127_7386904_10 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.0000000000000000000000000000000000000004055 153.0
BYD1_k127_7386904_11 Flavinator of succinate dehydrogenase K09159 - - 0.0000000000001637 74.0
BYD1_k127_7386904_12 - - - - 0.0000000000001942 72.0
BYD1_k127_7386904_13 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0000000002117 61.0
BYD1_k127_7386904_14 - - - - 0.0000006677 52.0
BYD1_k127_7386904_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 544.0
BYD1_k127_7386904_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.27,1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008571 519.0
BYD1_k127_7386904_4 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004905 466.0
BYD1_k127_7386904_5 fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009298 434.0
BYD1_k127_7386904_6 transcriptional K03710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 391.0
BYD1_k127_7386904_7 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000004353 173.0
BYD1_k127_7386904_8 transcriptional - - - 0.00000000000000000000000000000000000000000000004488 171.0
BYD1_k127_7386904_9 Succinate dehydrogenase, hydrophobic K00242 - - 0.000000000000000000000000000000000000000000003536 166.0
BYD1_k127_739546_0 YcaO cyclodehydratase, ATP-ad Mg2+-binding K09136 - - 1.624e-295 917.0
BYD1_k127_739546_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 2.801e-219 696.0
BYD1_k127_739546_10 PFAM von Willebrand factor type A K02448 - - 0.000000000000000000000000000000000000000000000000000003807 215.0
BYD1_k127_739546_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005776 476.0
BYD1_k127_739546_3 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 363.0
BYD1_k127_739546_4 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 365.0
BYD1_k127_739546_5 Mut7-C RNAse domain K09122 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009335 368.0
BYD1_k127_739546_6 FAD binding domain K00394 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 297.0
BYD1_k127_739546_7 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000357 266.0
BYD1_k127_739546_8 BON domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004483 248.0
BYD1_k127_739546_9 coenzyme F390 K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000509 247.0
BYD1_k127_7420597_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 7.461e-218 692.0
BYD1_k127_7420597_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006091 568.0
BYD1_k127_7420597_10 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000000000000001525 165.0
BYD1_k127_7420597_11 protein involved in tolerance to divalent cations K03926 - - 0.000000000000000000000000000000000000000003417 158.0
BYD1_k127_7420597_12 sigma 54 modulation protein K05808 - - 0.000000000000000000000000000000000000000007294 156.0
BYD1_k127_7420597_13 ABC-2 type transporter K09694 - - 0.00000000000000000000000000000000000000008728 153.0
BYD1_k127_7420597_14 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000001059 147.0
BYD1_k127_7420597_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004697 517.0
BYD1_k127_7420597_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 518.0
BYD1_k127_7420597_4 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 383.0
BYD1_k127_7420597_5 ABC-type (Unclassified) transport system, ATPase component K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 375.0
BYD1_k127_7420597_6 riboflavin synthase, alpha K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007092 282.0
BYD1_k127_7420597_7 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000004008 213.0
BYD1_k127_7420597_8 Belongs to the CinA family K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000001015 204.0
BYD1_k127_7420597_9 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000000000000000000000000000000000000001977 201.0
BYD1_k127_7428846_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1134.0
BYD1_k127_7428846_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 7.738e-308 956.0
BYD1_k127_7428846_10 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000001279 246.0
BYD1_k127_7428846_11 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000007247 228.0
BYD1_k127_7428846_12 PFAM OsmC family protein - - - 0.0000000000000000000000000000000000000000000000000001497 191.0
BYD1_k127_7428846_13 Copper resistance protein D - - - 0.00000000000000000000000000000000000000000000000002405 183.0
BYD1_k127_7428846_14 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.00000000000000000000000000000000000000000000000004016 190.0
BYD1_k127_7428846_15 LysE type translocator - - - 0.0000000000000000000000000000000000000000000000004826 184.0
BYD1_k127_7428846_16 peroxiredoxin activity K01607,K04756 - 4.1.1.44 0.0000000000000000000000000000000000001096 145.0
BYD1_k127_7428846_17 Heavy-metal-associated domain K07213 - - 0.0000000000000000000001754 101.0
BYD1_k127_7428846_2 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 487.0
BYD1_k127_7428846_3 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 360.0
BYD1_k127_7428846_4 PFAM Aminotransferase class I and II K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 314.0
BYD1_k127_7428846_5 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 307.0
BYD1_k127_7428846_6 GTP-binding protein TypA K06207 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002523 274.0
BYD1_k127_7428846_7 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007039 259.0
BYD1_k127_7428846_8 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007281 271.0
BYD1_k127_7428846_9 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000001734 246.0
BYD1_k127_7467288_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 497.0
BYD1_k127_7467288_1 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 315.0
BYD1_k127_7526037_0 TOBE domain K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008412 490.0
BYD1_k127_7526037_1 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 482.0
BYD1_k127_7526037_10 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000006641 187.0
BYD1_k127_7526037_11 Two component signalling adaptor domain - - - 0.000000000000000000000000000000000000000000001221 168.0
BYD1_k127_7526037_12 4Fe-4S binding domain - - - 0.0000000000000000000000000000008623 121.0
BYD1_k127_7526037_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 396.0
BYD1_k127_7526037_3 TOBE domain K02019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009964 371.0
BYD1_k127_7526037_4 Binding-protein-dependent transport system inner membrane component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 362.0
BYD1_k127_7526037_5 molybdenum ABC transporter, periplasmic K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000825 367.0
BYD1_k127_7526037_6 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 323.0
BYD1_k127_7526037_7 chemotaxis, protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009119 323.0
BYD1_k127_7526037_8 Dinitrogenase iron-molybdenum cofactor, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004852 295.0
BYD1_k127_7526037_9 NifQ K15790 - - 0.000000000000000000000000000000000000000000000000000000000002113 216.0
BYD1_k127_7542995_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0 1103.0
BYD1_k127_7542995_1 GTP-binding protein TypA K06207 - - 8.194e-300 923.0
BYD1_k127_7542995_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 453.0
BYD1_k127_7542995_3 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 369.0
BYD1_k127_7542995_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003844 257.0
BYD1_k127_7542995_5 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.000000001443 67.0
BYD1_k127_7565868_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1656.0
BYD1_k127_7565868_1 nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC K02567 - - 0.0 1532.0
BYD1_k127_7565868_10 MauM NapG family ferredoxin-type protein K02573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 412.0
BYD1_k127_7565868_11 RimK-like ATPgrasp N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 409.0
BYD1_k127_7565868_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 370.0
BYD1_k127_7565868_13 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 330.0
BYD1_k127_7565868_14 PFAM TatD-related deoxyribonuclease K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008714 325.0
BYD1_k127_7565868_15 cytochrome c-type protein K02569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 313.0
BYD1_k127_7565868_16 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 305.0
BYD1_k127_7565868_17 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002022 268.0
BYD1_k127_7565868_18 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007237 246.0
BYD1_k127_7565868_19 AMMECR1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001979 248.0
BYD1_k127_7565868_2 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 6.857e-308 953.0
BYD1_k127_7565868_20 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000002401 231.0
BYD1_k127_7565868_21 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000000006552 194.0
BYD1_k127_7565868_22 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000000000000000001691 193.0
BYD1_k127_7565868_23 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000005882 193.0
BYD1_k127_7565868_24 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.000000000000000000000000000000000000000000000000001239 193.0
BYD1_k127_7565868_25 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.00000000000000000000000000000000000000000000000001525 196.0
BYD1_k127_7565868_27 FeS assembly protein IscX - - - 0.000000000000000000000000000000003206 130.0
BYD1_k127_7565868_28 Protein of unknown function (DUF3149) - - - 0.0000000003042 64.0
BYD1_k127_7565868_29 NapD protein K02570 - - 0.00000001412 60.0
BYD1_k127_7565868_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006585 579.0
BYD1_k127_7565868_4 Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 578.0
BYD1_k127_7565868_5 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 595.0
BYD1_k127_7565868_6 Glutamate-cysteine ligase family 2(GCS2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 502.0
BYD1_k127_7565868_7 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 473.0
BYD1_k127_7565868_8 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 462.0
BYD1_k127_7565868_9 4Fe-4S binding domain K02574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 428.0
BYD1_k127_7600194_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009014 532.0
BYD1_k127_7600194_1 - - - - 0.000000000000009257 81.0
BYD1_k127_7600194_2 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000009593 75.0
BYD1_k127_7600194_3 - - - - 0.00000001305 59.0
BYD1_k127_7612857_0 pyruvate phosphate dikinase K01006,K01007 - 2.7.9.1,2.7.9.2 0.0 1569.0
BYD1_k127_7612857_1 ABC transporter K15738 - - 1.534e-302 944.0
BYD1_k127_7612857_10 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 359.0
BYD1_k127_7612857_11 Type II secretion system (T2SS), protein F K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 347.0
BYD1_k127_7612857_12 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 337.0
BYD1_k127_7612857_13 Histidine-specific methyltransferase, SAM-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 329.0
BYD1_k127_7612857_14 Flp pilus assembly protein CpaB K02279 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 314.0
BYD1_k127_7612857_15 Ankyrin repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008281 312.0
BYD1_k127_7612857_16 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K02479 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005813 298.0
BYD1_k127_7612857_17 receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 318.0
BYD1_k127_7612857_18 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001648 237.0
BYD1_k127_7612857_19 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000000000000000000000000238 230.0
BYD1_k127_7612857_2 electron transport coupled proton transport - - - 4.97e-279 872.0
BYD1_k127_7612857_20 COG3175 Cytochrome oxidase assembly factor K02258 - - 0.00000000000000000000000000000000000000000000000002999 186.0
BYD1_k127_7612857_21 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000007391 184.0
BYD1_k127_7612857_22 Belongs to the peptidase S8 family K20276 - - 0.0000000000000000000000000000000000000000000002938 192.0
BYD1_k127_7612857_23 TadE-like protein - - - 0.000000000000000000000000000000000001267 158.0
BYD1_k127_7612857_24 luxR family - - - 0.000000000000000000000000000000000003497 150.0
BYD1_k127_7612857_25 Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins K13643 GO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000003951 138.0
BYD1_k127_7612857_26 TadE-like protein - - - 0.00000000000000000000000000000001754 140.0
BYD1_k127_7612857_27 Type IV leader peptidase family K02278 - 3.4.23.43 0.000000000000000000000000000001039 128.0
BYD1_k127_7612857_28 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000000000000000000000000929 123.0
BYD1_k127_7612857_29 Belongs to the peptidase S8 family K01179,K01406,K07004,K20951,K20952 - 3.2.1.4,3.4.24.40 0.0000000000000000000001629 115.0
BYD1_k127_7612857_3 Type II/IV secretion system protein K02283,K20527 - - 1.012e-207 654.0
BYD1_k127_7612857_31 response regulator - - - 0.00000000000000001716 90.0
BYD1_k127_7612857_32 calcium- and calmodulin-responsive adenylate cyclase activity K20276 - - 0.00000000000009227 86.0
BYD1_k127_7612857_33 Flp/Fap pilin component K02651 - - 0.0000000002226 66.0
BYD1_k127_7612857_34 PFAM Flp Fap pilin component K02651 - - 0.0008316 44.0
BYD1_k127_7612857_4 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 553.0
BYD1_k127_7612857_5 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007589 504.0
BYD1_k127_7612857_6 Type II and III secretion system protein K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 467.0
BYD1_k127_7612857_7 pilus assembly protein K02282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006748 440.0
BYD1_k127_7612857_8 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 416.0
BYD1_k127_7612857_9 Type II secretion system (T2SS), protein F K12510 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003646 362.0
BYD1_k127_7679510_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1094.0
BYD1_k127_7679510_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1033.0
BYD1_k127_7679510_2 binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 8.412e-204 649.0
BYD1_k127_7679510_3 Fe-S oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 336.0
BYD1_k127_7679510_4 Spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 329.0
BYD1_k127_7679510_5 P-type ATPase K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000002084 264.0
BYD1_k127_7679510_6 Methyl-viologen-reducing hydrogenase, delta subunit K14127 - 1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000001453 171.0
BYD1_k127_7679510_7 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000005052 126.0
BYD1_k127_7679510_8 Sulfurtransferase TusA - - - 0.0000000000000000000007112 97.0
BYD1_k127_7679510_9 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000001346 101.0
BYD1_k127_7781993_0 Tex-like protein N-terminal domain K06959 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - 0.0 1236.0
BYD1_k127_7781993_1 DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation K05592 - 3.6.4.13 7.844e-200 644.0
BYD1_k127_7781993_2 diguanylate cyclase K13590 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005153 336.0
BYD1_k127_7781993_3 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 310.0
BYD1_k127_7781993_4 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000448 258.0
BYD1_k127_7781993_5 YaeQ - - - 0.0000000000000000000000000000000000000000000000000000000000000003758 225.0
BYD1_k127_7781993_6 Thioredoxin K05838 - - 0.00000000000000000000000000000000000000000000000006834 180.0
BYD1_k127_7781993_7 HEAT repeats - - - 0.000000000000000000000000000000002798 134.0
BYD1_k127_7836939_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0 1667.0
BYD1_k127_7836939_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1563.0
BYD1_k127_7836939_10 ATPases involved in chromosome partitioning - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006014 330.0
BYD1_k127_7836939_11 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0003868,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019752,GO:0019835,GO:0019836,GO:0031640,GO:0035821,GO:0043436,GO:0044003,GO:0044004,GO:0044179,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046395,GO:0051213,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000223 250.0
BYD1_k127_7836939_12 Type 12 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000002084 240.0
BYD1_k127_7836939_13 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000298 216.0
BYD1_k127_7836939_14 - - - - 0.00000000000000000000000000000000000004177 147.0
BYD1_k127_7836939_15 - - - - 0.00000000005147 65.0
BYD1_k127_7836939_16 - - - - 0.0002065 44.0
BYD1_k127_7836939_2 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 8.197e-232 723.0
BYD1_k127_7836939_3 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 2.728e-207 655.0
BYD1_k127_7836939_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004492 606.0
BYD1_k127_7836939_5 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005504 571.0
BYD1_k127_7836939_6 amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 576.0
BYD1_k127_7836939_7 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 457.0
BYD1_k127_7836939_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 446.0
BYD1_k127_7836939_9 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 337.0
BYD1_k127_7844023_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 6.306e-204 641.0
BYD1_k127_7844023_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.918e-203 638.0
BYD1_k127_7844023_10 - - - - 0.00000000000000000000000000000000000000000000000000001367 201.0
BYD1_k127_7844023_11 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000000000001608 176.0
BYD1_k127_7844023_12 CNP1-like family - - - 0.0000000000000000000000000000000000000000001314 166.0
BYD1_k127_7844023_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 550.0
BYD1_k127_7844023_3 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 462.0
BYD1_k127_7844023_4 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 427.0
BYD1_k127_7844023_5 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005765 296.0
BYD1_k127_7844023_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001074 278.0
BYD1_k127_7844023_7 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000000000000000369 229.0
BYD1_k127_7844023_8 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000000000005048 211.0
BYD1_k127_7844023_9 redox protein, regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000000000000000000001885 220.0
BYD1_k127_7846944_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.284e-265 842.0
BYD1_k127_7846944_1 pyridine nucleotide-disulphide oxidoreductase K17218 GO:0003674,GO:0003824,GO:0003955,GO:0005488,GO:0005515,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0019646,GO:0022900,GO:0022904,GO:0042802,GO:0044237,GO:0045333,GO:0055114 1.8.5.4 3.615e-222 696.0
BYD1_k127_7846944_10 Thioesterase-like superfamily - - - 0.0000000000000000000000000000000000000000008208 168.0
BYD1_k127_7846944_11 7TM receptor with intracellular HD hydrolase - - - 0.0000000000000000000000000003848 117.0
BYD1_k127_7846944_12 - - - - 0.000000000000008303 78.0
BYD1_k127_7846944_14 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0001892 51.0
BYD1_k127_7846944_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007082 590.0
BYD1_k127_7846944_3 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 569.0
BYD1_k127_7846944_4 aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 527.0
BYD1_k127_7846944_5 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 487.0
BYD1_k127_7846944_6 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002047 262.0
BYD1_k127_7846944_7 PFAM Cupin 2 conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002355 255.0
BYD1_k127_7846944_8 Glycosyltransferase Family 4 K14335 - - 0.00000000000000000000000000000000000000000000000000000000004373 213.0
BYD1_k127_7846944_9 Protein of unknown function (DUF1282) - - - 0.00000000000000000000000000000000000000000000000000000000008839 212.0
BYD1_k127_7864412_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 2.463e-257 799.0
BYD1_k127_7864412_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004421 391.0
BYD1_k127_7871860_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1412.0
BYD1_k127_7871860_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 571.0
BYD1_k127_7871860_10 HAD-hyrolase-like K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000000000000007514 235.0
BYD1_k127_7871860_11 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000168 164.0
BYD1_k127_7871860_12 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000002029 154.0
BYD1_k127_7871860_13 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.00000000000000000000000000009724 121.0
BYD1_k127_7871860_14 YgbB family K01770 - 4.6.1.12 0.00000005626 54.0
BYD1_k127_7871860_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 556.0
BYD1_k127_7871860_3 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 539.0
BYD1_k127_7871860_4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 418.0
BYD1_k127_7871860_5 Histidine kinase K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005794 419.0
BYD1_k127_7871860_6 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 392.0
BYD1_k127_7871860_7 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 373.0
BYD1_k127_7871860_8 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 368.0
BYD1_k127_7871860_9 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001272 260.0
BYD1_k127_7932480_0 COG1960 Acyl-CoA dehydrogenases K20035 - - 5.287e-270 841.0
BYD1_k127_7932480_1 Electron transfer flavoprotein alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 475.0
BYD1_k127_7932480_2 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 437.0
BYD1_k127_7932480_3 Beta-lactamase K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 377.0
BYD1_k127_7932480_4 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008361 294.0
BYD1_k127_7932480_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000004248 238.0
BYD1_k127_7932480_6 Cobalt uptake substrate-specific transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000002335 214.0
BYD1_k127_7932480_7 - - - - 0.00000000000000000000000003651 115.0
BYD1_k127_7932480_8 Protein of unknown function (DUF3135) - - - 0.000004458 57.0
BYD1_k127_7932554_0 GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 474.0
BYD1_k127_7977571_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 1.044e-247 771.0
BYD1_k127_7977571_1 Ammonium Transporter Family K03320,K06580 - - 4.181e-224 698.0
BYD1_k127_7977571_10 ATPase (AAA K06923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 402.0
BYD1_k127_7977571_11 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 388.0
BYD1_k127_7977571_12 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008067 369.0
BYD1_k127_7977571_13 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006026 357.0
BYD1_k127_7977571_14 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000548 363.0
BYD1_k127_7977571_15 Mota tolq exbb proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004095 344.0
BYD1_k127_7977571_16 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 309.0
BYD1_k127_7977571_17 EH_Signature domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 304.0
BYD1_k127_7977571_18 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007897 286.0
BYD1_k127_7977571_19 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000008263 261.0
BYD1_k127_7977571_2 - - - - 1.516e-206 646.0
BYD1_k127_7977571_20 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000000000000001323 256.0
BYD1_k127_7977571_21 COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000006085 251.0
BYD1_k127_7977571_22 OmpA family - - - 0.00000000000000000000000000000000000000000000000000000000000003128 228.0
BYD1_k127_7977571_23 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000000000000000000000000000000000000000000000000003186 222.0
BYD1_k127_7977571_24 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000227 215.0
BYD1_k127_7977571_25 ketosteroid isomerase - - - 0.0000000000000000000000000000000000000000000000000000009177 201.0
BYD1_k127_7977571_26 OmpA family K03640 - - 0.000000000000000000000000000000000000000000000000003882 188.0
BYD1_k127_7977571_27 Domain of unknown function (DUF4442) - - - 0.00000000000000000000000000000000000000000000000002533 183.0
BYD1_k127_7977571_28 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000003359 196.0
BYD1_k127_7977571_29 TonB C terminal K03646 - - 0.00000000000000000000000000000000000000000000004995 181.0
BYD1_k127_7977571_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008025 606.0
BYD1_k127_7977571_30 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.000000000000000000000000000000000000000000000104 190.0
BYD1_k127_7977571_31 Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000000000000000000000001839 161.0
BYD1_k127_7977571_32 PilZ domain - - - 0.0000000000000000000000000000000004021 135.0
BYD1_k127_7977571_33 Cytochrome d ubiquinol oxidase subunit 2-like - - - 0.000000000000000000000000000000001081 138.0
BYD1_k127_7977571_34 Helix-turn-helix - - - 0.00000000000000000000000000000002172 132.0
BYD1_k127_7977571_35 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000000000003692 97.0
BYD1_k127_7977571_36 PFAM Sporulation domain protein - - - 0.0000000000000002049 88.0
BYD1_k127_7977571_37 CsbD-like - - - 0.000000000003694 73.0
BYD1_k127_7977571_38 - - - - 0.0005948 42.0
BYD1_k127_7977571_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 565.0
BYD1_k127_7977571_5 sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 536.0
BYD1_k127_7977571_6 Ubiquinone biosynthesis hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 469.0
BYD1_k127_7977571_7 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 447.0
BYD1_k127_7977571_8 Membrane-bound lytic murein transglycosylase K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 450.0
BYD1_k127_7977571_9 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007704 407.0
BYD1_k127_8062355_0 DNA segregation ATPase FtsK SpoIIIE K03466 - - 0.0 1013.0
BYD1_k127_8062355_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 5.061e-302 945.0
BYD1_k127_8062355_10 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007272 407.0
BYD1_k127_8062355_11 Outer membrane efflux protein K12543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000487 357.0
BYD1_k127_8062355_12 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 334.0
BYD1_k127_8062355_13 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000275 263.0
BYD1_k127_8062355_14 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000000000000000000000000000000000000000000000158 228.0
BYD1_k127_8062355_15 periplasmic protein - - - 0.0000000000000000000000000000000000000000000000000000000000000006318 227.0
BYD1_k127_8062355_16 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000000000000000000000000000003456 203.0
BYD1_k127_8062355_17 Smr protein MutS2 - - - 0.000000000000000000000000000000000000000000000000000458 194.0
BYD1_k127_8062355_18 Rhodanese-like domain - - - 0.00000000000000000000000000000000003362 138.0
BYD1_k127_8062355_19 luxR family - - - 0.000000000000000000000000000000001675 139.0
BYD1_k127_8062355_2 ABC transporter transmembrane region K12541 - - 3.54e-300 936.0
BYD1_k127_8062355_20 PFAM FecR protein - - - 0.0000000000000000000002751 109.0
BYD1_k127_8062355_22 Heavy-metal-associated domain K07213 - - 0.000000000006178 79.0
BYD1_k127_8062355_23 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000002154 68.0
BYD1_k127_8062355_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 9.783e-253 789.0
BYD1_k127_8062355_4 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 9.838e-237 738.0
BYD1_k127_8062355_5 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 5.838e-210 659.0
BYD1_k127_8062355_6 MgsA AAA+ ATPase C terminal K07478 - - 8.926e-210 661.0
BYD1_k127_8062355_7 LapD/MoxY periplasmic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 576.0
BYD1_k127_8062355_8 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 538.0
BYD1_k127_8062355_9 type I secretion membrane fusion protein, HlyD family K12542 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 449.0
BYD1_k127_8075985_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1234.0
BYD1_k127_8075985_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.225e-319 987.0
BYD1_k127_8075985_10 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004991 434.0
BYD1_k127_8075985_11 Response regulator receiver domain K07814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008883 431.0
BYD1_k127_8075985_12 D-ala D-ala ligase N-terminus K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 423.0
BYD1_k127_8075985_13 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 410.0
BYD1_k127_8075985_14 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 382.0
BYD1_k127_8075985_15 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 367.0
BYD1_k127_8075985_16 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 369.0
BYD1_k127_8075985_17 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 344.0
BYD1_k127_8075985_18 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009753 338.0
BYD1_k127_8075985_19 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 336.0
BYD1_k127_8075985_2 Class II Aldolase and Adducin N-terminal domain - - - 1.507e-291 916.0
BYD1_k127_8075985_20 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.00000000000000000000000000000000000000000000000000000000000000001131 234.0
BYD1_k127_8075985_21 SpoIIAA-like - - - 0.000000000000000000000000000000003708 131.0
BYD1_k127_8075985_22 Protein of unknown function (DUF721) - - - 0.000000000000000000000001495 110.0
BYD1_k127_8075985_23 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000001669 80.0
BYD1_k127_8075985_24 - - - - 0.000000000002052 70.0
BYD1_k127_8075985_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 6.968e-229 734.0
BYD1_k127_8075985_4 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 2.54e-214 669.0
BYD1_k127_8075985_5 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 565.0
BYD1_k127_8075985_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006048 522.0
BYD1_k127_8075985_7 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005892 496.0
BYD1_k127_8075985_8 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 470.0
BYD1_k127_8075985_9 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004034 456.0
BYD1_k127_8111474_0 acyl-CoA dehydrogenase K06445 - - 0.0 1146.0
BYD1_k127_8111474_1 COG2202 FOG PAS PAC domain K03776 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 499.0
BYD1_k127_8111474_10 Protein of unknown function (DUF4242) - - - 0.00000000000000000000000000000000000000000000004876 171.0
BYD1_k127_8111474_11 MASE1 - - - 0.000000000000000000000000000002281 141.0
BYD1_k127_8111474_12 Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins K13643 - - 0.00000000000000000000000007557 123.0
BYD1_k127_8111474_13 - - - - 0.0000000000000000000000962 109.0
BYD1_k127_8111474_2 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 424.0
BYD1_k127_8111474_3 Bacterial periplasmic substrate-binding proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 377.0
BYD1_k127_8111474_4 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 363.0
BYD1_k127_8111474_5 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008034 282.0
BYD1_k127_8111474_6 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003666 295.0
BYD1_k127_8111474_7 Domain of unknown function (DUF3369) - - - 0.000000000000000000000000000000000000000000000000000000000000000001644 250.0
BYD1_k127_8111474_8 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000005773 229.0
BYD1_k127_8111474_9 membrane - - - 0.00000000000000000000000000000000000000000000000000000000002129 213.0
BYD1_k127_8171185_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 499.0
BYD1_k127_8171185_1 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 309.0
BYD1_k127_8171185_2 NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 304.0
BYD1_k127_8171185_3 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000009365 246.0
BYD1_k127_8171185_4 Proton-conducting membrane transporter - - - 0.0000000000000000001782 89.0
BYD1_k127_8199730_0 'signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 300.0
BYD1_k127_8199730_1 Belongs to the UPF0178 family K09768 - - 0.00000000000000000000000000000000000001811 145.0
BYD1_k127_829096_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1850.0
BYD1_k127_829096_1 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.0 1649.0
BYD1_k127_829096_10 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 3.62e-197 620.0
BYD1_k127_829096_11 Methyl-accepting chemotaxis protein K03406 - - 9.344e-197 627.0
BYD1_k127_829096_12 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007567 595.0
BYD1_k127_829096_13 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 604.0
BYD1_k127_829096_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 547.0
BYD1_k127_829096_15 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 538.0
BYD1_k127_829096_16 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005838 549.0
BYD1_k127_829096_17 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 536.0
BYD1_k127_829096_18 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 498.0
BYD1_k127_829096_19 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 486.0
BYD1_k127_829096_2 Heat shock 70 kDa protein K04043 - - 0.0 1082.0
BYD1_k127_829096_20 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 466.0
BYD1_k127_829096_21 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 448.0
BYD1_k127_829096_22 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 450.0
BYD1_k127_829096_23 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 441.0
BYD1_k127_829096_24 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 431.0
BYD1_k127_829096_25 Phosphate transport system permease K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 413.0
BYD1_k127_829096_26 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 396.0
BYD1_k127_829096_27 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 393.0
BYD1_k127_829096_28 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 381.0
BYD1_k127_829096_29 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 366.0
BYD1_k127_829096_3 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1057.0
BYD1_k127_829096_30 dihydropteroate synthase K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 347.0
BYD1_k127_829096_31 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 333.0
BYD1_k127_829096_32 Domain of unknown function (DUF4440) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 340.0
BYD1_k127_829096_33 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 332.0
BYD1_k127_829096_34 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 323.0
BYD1_k127_829096_35 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006656 322.0
BYD1_k127_829096_36 Nitrate reductase delta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009961 302.0
BYD1_k127_829096_37 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009359 299.0
BYD1_k127_829096_38 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000366 278.0
BYD1_k127_829096_39 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001385 278.0
BYD1_k127_829096_4 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 4.3e-287 912.0
BYD1_k127_829096_40 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001453 273.0
BYD1_k127_829096_41 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001793 264.0
BYD1_k127_829096_42 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001733 271.0
BYD1_k127_829096_43 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000001165 260.0
BYD1_k127_829096_44 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000002718 256.0
BYD1_k127_829096_45 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000007804 251.0
BYD1_k127_829096_46 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000001694 260.0
BYD1_k127_829096_47 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002951 250.0
BYD1_k127_829096_48 Thioredoxin-like domain K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000001318 228.0
BYD1_k127_829096_49 TPM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000006466 228.0
BYD1_k127_829096_5 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 7.747e-280 872.0
BYD1_k127_829096_50 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000001007 220.0
BYD1_k127_829096_51 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000000000000000000001087 233.0
BYD1_k127_829096_52 TPM domain K06872 - - 0.000000000000000000000000000000000000000000000000000000000000006813 227.0
BYD1_k127_829096_53 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000000000000002488 220.0
BYD1_k127_829096_54 Domain of unknown function (DUF309) - - - 0.00000000000000000000000000000000000000000000000006336 186.0
BYD1_k127_829096_55 Histidine biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000113 186.0
BYD1_k127_829096_56 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000003523 168.0
BYD1_k127_829096_57 PFAM Cupin 2 conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000006134 173.0
BYD1_k127_829096_58 - - - - 0.0000000000000000000000000000000000000002676 164.0
BYD1_k127_829096_59 Preprotein translocase subunit SecG K03075 - - 0.00000000000000000000000000000000000006013 149.0
BYD1_k127_829096_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 6.911e-245 759.0
BYD1_k127_829096_60 - - - - 0.000000000000000000000000000000000001496 142.0
BYD1_k127_829096_61 RNA-binding protein containing KH domain possibly ribosomal protein - - - 0.00000000000000000000000000000000002063 138.0
BYD1_k127_829096_62 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.00000000000000000000000000000000002539 141.0
BYD1_k127_829096_63 - - - - 0.00000000000000000000000000000002976 138.0
BYD1_k127_829096_65 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000000002026 112.0
BYD1_k127_829096_66 - - - - 0.0000000000000000696 82.0
BYD1_k127_829096_7 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 1.07e-236 739.0
BYD1_k127_829096_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 1.783e-233 738.0
BYD1_k127_829096_9 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.936e-222 696.0
BYD1_k127_8338119_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1270.0
BYD1_k127_8338119_1 Methylmalonyl-CoA mutase large subunit K01847 - 5.4.99.2 0.0 1172.0
BYD1_k127_8338119_10 Hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 532.0
BYD1_k127_8338119_11 COG4206 Outer membrane cobalamin receptor protein K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 531.0
BYD1_k127_8338119_12 TIGRFAM para-aminobenzoate synthase, subunit I K01665,K03342 - 2.6.1.85,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 527.0
BYD1_k127_8338119_13 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009381 463.0
BYD1_k127_8338119_14 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 458.0
BYD1_k127_8338119_15 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 446.0
BYD1_k127_8338119_16 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 431.0
BYD1_k127_8338119_17 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 424.0
BYD1_k127_8338119_18 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 404.0
BYD1_k127_8338119_19 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 415.0
BYD1_k127_8338119_2 Ferrous iron transport protein B K04759 - - 5.29e-288 902.0
BYD1_k127_8338119_20 Periplasmic binding protein K02016,K06858 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 385.0
BYD1_k127_8338119_21 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 368.0
BYD1_k127_8338119_22 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 359.0
BYD1_k127_8338119_23 Glycosyl transferases group 1 K02844 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 377.0
BYD1_k127_8338119_24 COG0079 Histidinol-phosphate aromatic aminotransferase and cobyric acid decarboxylase K02225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005515 353.0
BYD1_k127_8338119_25 membrane transporter protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 346.0
BYD1_k127_8338119_26 enoyl-CoA hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 334.0
BYD1_k127_8338119_27 cytochrome - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 335.0
BYD1_k127_8338119_28 Cob(II)yrinic acid a,c-diamide reductase K02303,K04719 - 1.13.11.79,2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 338.0
BYD1_k127_8338119_29 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 317.0
BYD1_k127_8338119_3 ribonuclease, Rne Rng family K08301 - - 7.863e-247 774.0
BYD1_k127_8338119_30 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003651 310.0
BYD1_k127_8338119_31 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 294.0
BYD1_k127_8338119_32 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843,K02849 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 295.0
BYD1_k127_8338119_33 COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 302.0
BYD1_k127_8338119_34 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008426 289.0
BYD1_k127_8338119_35 transcriptional - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009898 280.0
BYD1_k127_8338119_36 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843,K02849 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003485 281.0
BYD1_k127_8338119_37 family 9 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008806 278.0
BYD1_k127_8338119_38 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001823 274.0
BYD1_k127_8338119_39 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000002574 273.0
BYD1_k127_8338119_4 Cytochrome c bacterial - - - 1.044e-244 767.0
BYD1_k127_8338119_40 cell redox homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001014 270.0
BYD1_k127_8338119_41 Flagellar Assembly Protein A K09749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005984 277.0
BYD1_k127_8338119_42 hydrolase K20881 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000368 257.0
BYD1_k127_8338119_43 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009797 256.0
BYD1_k127_8338119_44 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000004545 261.0
BYD1_k127_8338119_45 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008223 244.0
BYD1_k127_8338119_46 EVE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002003 237.0
BYD1_k127_8338119_47 CHAT domain - - - 0.0000000000000000000000000000000000000000000000000000000000003003 241.0
BYD1_k127_8338119_48 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000000000000000000000000000004175 216.0
BYD1_k127_8338119_49 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000009522 212.0
BYD1_k127_8338119_5 pyridine nucleotide-disulphide oxidoreductase K17218 GO:0003674,GO:0003824,GO:0003955,GO:0005488,GO:0005515,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0019646,GO:0022900,GO:0022904,GO:0042802,GO:0044237,GO:0045333,GO:0055114 1.8.5.4 5.698e-227 708.0
BYD1_k127_8338119_50 response regulator K02485 - - 0.00000000000000000000000000000000000000000000000000000001735 200.0
BYD1_k127_8338119_51 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000002839 183.0
BYD1_k127_8338119_52 - - - - 0.00000000000000000000000000000000000000005588 155.0
BYD1_k127_8338119_53 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.00000000000000000000000000000000000001348 158.0
BYD1_k127_8338119_54 - - - - 0.0000000000000000000000000000000007219 141.0
BYD1_k127_8338119_55 - - - - 0.000000000000000000000000000000004181 144.0
BYD1_k127_8338119_56 Pfam Ankyrin K10799 - 2.4.2.30 0.00000000000000000000000000000006028 133.0
BYD1_k127_8338119_57 Protein of unknown function (DUF2782) - - - 0.000000000000000000000000000005805 122.0
BYD1_k127_8338119_58 Oxidoreductase FAD-binding domain protein K00523 - 1.17.1.1 0.000000000000000000000000073 111.0
BYD1_k127_8338119_59 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000000000000006445 104.0
BYD1_k127_8338119_6 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 7.54e-226 711.0
BYD1_k127_8338119_61 - - - - 0.0000000000000000003058 90.0
BYD1_k127_8338119_62 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 0.0000000000000000008266 88.0
BYD1_k127_8338119_64 Hypothetical methyltransferase - - - 0.000000001565 68.0
BYD1_k127_8338119_65 3-demethylubiquinone-9 3-O-methyltransferase activity K15257 - - 0.0000007037 61.0
BYD1_k127_8338119_66 - - - - 0.000003691 51.0
BYD1_k127_8338119_67 - - - - 0.00001748 50.0
BYD1_k127_8338119_7 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 2.011e-225 714.0
BYD1_k127_8338119_8 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 3.441e-198 627.0
BYD1_k127_8338119_9 Cobyrinic acid ac-diamide synthase K02224 - 6.3.5.11,6.3.5.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 596.0
BYD1_k127_836326_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 0.0 1220.0
BYD1_k127_836326_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 5.496e-272 852.0
BYD1_k127_836326_10 Protein of unknown function (DUF2802) - - - 0.00008883 52.0
BYD1_k127_836326_2 Belongs to the thiolase family K00632 - 2.3.1.16 8.275e-199 625.0
BYD1_k127_836326_3 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 568.0
BYD1_k127_836326_4 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003425 387.0
BYD1_k127_836326_5 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001173 246.0
BYD1_k127_836326_6 Thioesterase superfamily K10806 - - 0.000000000000000000000000000000000000000000000000003018 184.0
BYD1_k127_836326_7 endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000003254 186.0
BYD1_k127_836326_8 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.0000000000000000000000000000000006199 135.0
BYD1_k127_836326_9 Sporulation related domain - - - 0.0000000000000000001058 99.0
BYD1_k127_8375421_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.0 1167.0
BYD1_k127_8375421_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - 0.0 1160.0
BYD1_k127_8375421_10 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005727 370.0
BYD1_k127_8375421_11 SMART beta-lactamase domain protein K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 365.0
BYD1_k127_8375421_12 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 364.0
BYD1_k127_8375421_13 (FHA) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 315.0
BYD1_k127_8375421_14 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 313.0
BYD1_k127_8375421_15 phenylacetic acid degradation protein K02614 - - 0.0000000000000000000000000000000000000000001175 164.0
BYD1_k127_8375421_16 Glycosyltransferase like family 2 K00786,K20444 - - 0.00000000000000000000000000000000000008767 164.0
BYD1_k127_8375421_17 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000000000000000000000000000000206 134.0
BYD1_k127_8375421_2 CHASE2 K01768 - 4.6.1.1 2.276e-308 961.0
BYD1_k127_8375421_3 GAF domain - - - 1.662e-249 781.0
BYD1_k127_8375421_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 7.207e-223 697.0
BYD1_k127_8375421_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009827 578.0
BYD1_k127_8375421_6 phenylacetic acid degradation protein paaN - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 518.0
BYD1_k127_8375421_7 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 455.0
BYD1_k127_8375421_8 O-linked N-acetylglucosamine transferase SPINDLY family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 426.0
BYD1_k127_8375421_9 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003228 380.0
BYD1_k127_8396862_0 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.0 1517.0
BYD1_k127_8396862_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008961 468.0
BYD1_k127_8396862_2 Type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 378.0
BYD1_k127_8396862_3 Uncharacterised protein family (UPF0149) K07039 - - 0.000000000000000000000000000000000000000000001834 171.0
BYD1_k127_8396862_4 Peptidase S24-like K01356 - 3.4.21.88 0.0000000000003698 73.0
BYD1_k127_8396862_5 Post-segregation antitoxin CcdA K19164 - - 0.00005736 46.0
BYD1_k127_8420358_0 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001008 255.0
BYD1_k127_8420358_1 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001722 241.0
BYD1_k127_8420358_2 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000000000000000000007697 209.0
BYD1_k127_8420358_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000001867 181.0
BYD1_k127_8420358_4 Pentapeptide repeats (9 copies) - - - 0.000000000000000000000000000000000000000000000002339 189.0
BYD1_k127_8420358_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000001081 146.0
BYD1_k127_8463260_0 ABC transporter K06158 - - 6.1e-322 991.0
BYD1_k127_8463260_1 type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 591.0
BYD1_k127_8463260_2 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 378.0
BYD1_k127_8463260_3 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007851 309.0
BYD1_k127_8463260_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000001605 212.0
BYD1_k127_8463260_5 Rhodanese - - - 0.00000000000000000000000000000000000000000000000000000002075 207.0
BYD1_k127_8463260_6 cytochrome - - - 0.000000000000000000000000000000000000000001865 160.0
BYD1_k127_8463260_7 Pfam:DUF1311 - - - 0.00000000000000000000000000000602 138.0
BYD1_k127_8463260_8 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.00000008271 63.0
BYD1_k127_8509548_0 Sulfate transporter antisigma-factor antagonist STAS - - - 1.601e-302 944.0
BYD1_k127_8509548_1 pyruvate phosphate dikinase K01007 - 2.7.9.2 7.333e-265 841.0
BYD1_k127_8509548_10 Universal stress protein family - - - 0.0000003401 60.0
BYD1_k127_8509548_2 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009857 556.0
BYD1_k127_8509548_3 PFAM ATP-binding region ATPase domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 386.0
BYD1_k127_8509548_4 Transcriptional regulatory protein, C terminal K07666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007825 329.0
BYD1_k127_8509548_5 - - - - 0.0000000000000000000000000000000000000000000000000000002096 217.0
BYD1_k127_8509548_6 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000003802 212.0
BYD1_k127_8509548_7 Adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.0000000000000000000000000000000000002626 142.0
BYD1_k127_8509548_8 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000008694 134.0
BYD1_k127_8509548_9 phosphorelay signal transduction system - - - 0.0000000000000000000000000000003505 126.0
BYD1_k127_8665213_0 COG3666 Transposase and inactivated derivatives - - - 7.367e-254 788.0
BYD1_k127_8665213_1 cofactor biosynthesis protein NifB K02585 - - 1.806e-245 767.0
BYD1_k127_8665213_10 Ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000003268 198.0
BYD1_k127_8665213_11 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000001928 177.0
BYD1_k127_8665213_12 ArsC family - - - 0.00000000000000000000000000000000000000000000002656 175.0
BYD1_k127_8665213_13 4Fe-4S ferredoxin iron-sulfur binding domain - - - 0.0000000000000000000000000000000000000001133 159.0
BYD1_k127_8665213_14 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000000001728 147.0
BYD1_k127_8665213_15 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000364 167.0
BYD1_k127_8665213_16 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000004084 157.0
BYD1_k127_8665213_17 Cold shock protein domain K03704 - - 0.000000000000000000000000000000002686 131.0
BYD1_k127_8665213_18 PFAM Hemerythrin HHE cation binding domain protein - - - 0.0000000000000000000000000000001069 139.0
BYD1_k127_8665213_19 Transcriptional regulator - - - 0.0000000000000000000007086 98.0
BYD1_k127_8665213_2 Putative diguanylate phosphodiesterase - - - 8.471e-208 665.0
BYD1_k127_8665213_20 COG3943 Virulence protein - - - 0.000000000000000000004683 93.0
BYD1_k127_8665213_21 - - - - 0.00000000000000001494 93.0
BYD1_k127_8665213_22 lytic transglycosylase - - - 0.000000000000001441 84.0
BYD1_k127_8665213_24 Glycosyl transferase family 41 - - - 0.000456 50.0
BYD1_k127_8665213_3 belongs to the aldehyde dehydrogenase family K00141 - 1.2.1.28 3.301e-206 653.0
BYD1_k127_8665213_4 alcohol dehydrogenase K13979 - - 1.068e-198 622.0
BYD1_k127_8665213_5 Alcohol dehydrogenase GroES-like domain K00055 - 1.1.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 496.0
BYD1_k127_8665213_6 SIR2-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 401.0
BYD1_k127_8665213_7 ADP-ribosyl- dinitrogen reductase hydrolase K05521 - 3.2.2.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 401.0
BYD1_k127_8665213_8 Toxin-antitoxin system, toxin component, Fic family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 382.0
BYD1_k127_8665213_9 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 367.0
BYD1_k127_8840151_0 UPF0313 protein - - - 0.0 1046.0
BYD1_k127_8840151_1 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0 1039.0
BYD1_k127_8840151_10 Chemotaxis signal transduction protein K03415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046 497.0
BYD1_k127_8840151_11 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 498.0
BYD1_k127_8840151_12 Flagellar biosynthesis regulator FlhF K02404 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 489.0
BYD1_k127_8840151_13 Chemotaxis signal transduction protein K03415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007373 472.0
BYD1_k127_8840151_14 Sigma factor PP2C-like phosphatases K20977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 458.0
BYD1_k127_8840151_15 flagellar hook-associated protein K02396 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 469.0
BYD1_k127_8840151_16 MotA/TolQ/ExbB proton channel family K02556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 424.0
BYD1_k127_8840151_17 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 413.0
BYD1_k127_8840151_18 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 409.0
BYD1_k127_8840151_19 Belongs to the flagella basal body rod proteins family K02392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 387.0
BYD1_k127_8840151_2 COG0643 Chemotaxis protein histidine kinase and related kinases K03407 - 2.7.13.3 4.682e-279 870.0
BYD1_k127_8840151_20 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 381.0
BYD1_k127_8840151_21 flagellar motor K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 374.0
BYD1_k127_8840151_22 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 392.0
BYD1_k127_8840151_23 Histidine kinase K10942 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 380.0
BYD1_k127_8840151_24 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000714 349.0
BYD1_k127_8840151_25 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 339.0
BYD1_k127_8840151_26 Flagellar motor protein K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232 318.0
BYD1_k127_8840151_27 basal body rod protein K02391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 308.0
BYD1_k127_8840151_28 Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P) K03414 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 305.0
BYD1_k127_8840151_29 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 300.0
BYD1_k127_8840151_3 ATPase FliI YscN family K02412 - 3.6.3.14 1.615e-224 704.0
BYD1_k127_8840151_30 Flagellar rod assembly protein muramidase FlgJ K02395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005685 303.0
BYD1_k127_8840151_31 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001622 302.0
BYD1_k127_8840151_32 Flagellar basal body rod FlgEFG protein C-terminal K02390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005935 306.0
BYD1_k127_8840151_33 Flagellar hook-associated protein 3 K02397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001531 295.0
BYD1_k127_8840151_34 Nudix N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003162 266.0
BYD1_k127_8840151_35 Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002627 259.0
BYD1_k127_8840151_36 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002757 272.0
BYD1_k127_8840151_37 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000002626 266.0
BYD1_k127_8840151_38 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000000007001 248.0
BYD1_k127_8840151_39 Flagellar hook-length control protein FliK - - - 0.00000000000000000000000000000000000000000000000000000000000000000009897 245.0
BYD1_k127_8840151_4 response regulator - - - 3.744e-220 701.0
BYD1_k127_8840151_40 lytic transglycosylase - - - 0.000000000000000000000000000000000000000000000000000000000000000111 232.0
BYD1_k127_8840151_41 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.0000000000000000000000000000000000000000000000000000000000000001699 233.0
BYD1_k127_8840151_42 response regulator K03413 - - 0.000000000000000000000000000000000000000000000000000000000000002812 218.0
BYD1_k127_8840151_43 Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility - - - 0.0000000000000000000000000000000000000000000000000000000001027 213.0
BYD1_k127_8840151_44 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000000000000000000000000000000000008199 191.0
BYD1_k127_8840151_45 Flagellar motor switch K02417 - - 0.00000000000000000000000000000000000000000000000000001929 193.0
BYD1_k127_8840151_46 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000000000000000000000000000000000000000000000000001069 190.0
BYD1_k127_8840151_47 Flagellar assembly protein FliH K02411 - - 0.0000000000000000000000000000000000000000000000005241 182.0
BYD1_k127_8840151_48 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000001075 160.0
BYD1_k127_8840151_49 Flagellar export protein FliJ K02413 - - 0.000000000000000000000000000000000000002444 151.0
BYD1_k127_8840151_5 The M ring may be actively involved in energy transduction K02409 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004583 573.0
BYD1_k127_8840151_50 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.00000000000000000000000000000000000004754 147.0
BYD1_k127_8840151_51 Role in flagellar biosynthesis K02420 - - 0.00000000000000000000000000000000000424 138.0
BYD1_k127_8840151_52 cytoplasmic domain of flagellar protein FhlB K04061 - - 0.00000000000000000000000000000000007104 135.0
BYD1_k127_8840151_53 Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02403 - - 0.00000000000000000000000000000002401 131.0
BYD1_k127_8840151_54 STAS domain K20978 - - 0.00000000000000000000000000000002542 130.0
BYD1_k127_8840151_55 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.0000000000000000000000000000002517 130.0
BYD1_k127_8840151_56 Flagellar hook-basal body K02408 - - 0.000000000000000000000000000002699 122.0
BYD1_k127_8840151_57 Flagellar protein FliS K02422 - - 0.000000000000000000000000000003428 124.0
BYD1_k127_8840151_58 Flagellar hook-length control protein FliK K02414 - - 0.0000000000000000000000000005834 127.0
BYD1_k127_8840151_59 flagellar K02418 - - 0.00000000000000000000000002955 112.0
BYD1_k127_8840151_6 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004556 567.0
BYD1_k127_8840151_60 - - - - 0.0000000000000000000000001474 115.0
BYD1_k127_8840151_61 Flagellar protein FliT K02423 - - 0.000000000000000003937 89.0
BYD1_k127_8840151_62 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000004009 84.0
BYD1_k127_8840151_63 FlgN protein K02399 - - 0.000000000004604 74.0
BYD1_k127_8840151_64 negative regulator of flagellin synthesis K02398 - - 0.00000000001273 70.0
BYD1_k127_8840151_7 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005115 554.0
BYD1_k127_8840151_8 flagellar motor switch protein K02410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 502.0
BYD1_k127_8840151_9 flagellar motor switch protein K02416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 498.0
BYD1_k127_8863723_0 cobalamin-transporting ATPase activity K02014 - - 0.0 1106.0
BYD1_k127_8863723_1 Domain of unknown function (DUF4880) K07165 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 320.0
BYD1_k127_8863723_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000001432 207.0
BYD1_k127_8863723_3 Outer membrane protein beta-barrel family K02014 - - 0.0000000000000000000000000000000000000000000000000000003498 198.0
BYD1_k127_8863723_4 Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB K02014,K16092 - - 0.00000000000000000000000000000000000000000000005427 172.0
BYD1_k127_9051348_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 525.0
BYD1_k127_9051348_1 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 439.0
BYD1_k127_9051348_2 - - - - 0.0000000000000000000000000000000000000004434 155.0
BYD1_k127_9061508_0 diguanylate cyclase - - - 8.921e-236 744.0
BYD1_k127_9061508_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 459.0
BYD1_k127_9061508_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006803 328.0
BYD1_k127_9061508_3 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 297.0
BYD1_k127_9061508_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 293.0
BYD1_k127_9061508_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000001179 250.0
BYD1_k127_9061508_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001258 247.0
BYD1_k127_9061882_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 1.78e-269 840.0
BYD1_k127_9061882_1 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 1.158e-240 752.0
BYD1_k127_9061882_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 7.714e-198 628.0
BYD1_k127_9061882_3 Histidine kinase K07673 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 392.0
BYD1_k127_9061882_4 response regulator K07684 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006145 287.0
BYD1_k127_9061882_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000326 237.0
BYD1_k127_9061882_6 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000003558 237.0
BYD1_k127_9061882_8 - - - - 0.000000000000005589 76.0
BYD1_k127_9116919_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 0.0 1108.0
BYD1_k127_9116919_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1101.0
BYD1_k127_9116919_10 Part of a membrane complex involved in electron transport K03614 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 427.0
BYD1_k127_9116919_11 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 341.0
BYD1_k127_9116919_12 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008357 336.0
BYD1_k127_9116919_13 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009739 329.0
BYD1_k127_9116919_14 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 315.0
BYD1_k127_9116919_15 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 308.0
BYD1_k127_9116919_16 Part of a membrane complex involved in electron transport K03613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003555 287.0
BYD1_k127_9116919_17 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007185 272.0
BYD1_k127_9116919_18 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000001958 253.0
BYD1_k127_9116919_19 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002493 246.0
BYD1_k127_9116919_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0 1075.0
BYD1_k127_9116919_20 Part of a membrane complex involved in electron transport K03612 - - 0.000000000000000000000000000000000000000000000000000000000000000001683 246.0
BYD1_k127_9116919_21 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000000000004702 209.0
BYD1_k127_9116919_22 G T U mismatch-specific DNA glycosylase - - - 0.000000000000000000000000000000000000000000000000000000000008171 211.0
BYD1_k127_9116919_23 NLP P60 protein - - - 0.00000000000000000000000000000000000000000000000001572 184.0
BYD1_k127_9116919_24 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000000000000006758 182.0
BYD1_k127_9116919_25 SapC - - - 0.00000000000000000000000000000000000000000000000899 183.0
BYD1_k127_9116919_26 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000000000001549 100.0
BYD1_k127_9116919_3 Hsp90 protein K04079 - - 0.0 1049.0
BYD1_k127_9116919_4 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 2.977e-288 895.0
BYD1_k127_9116919_5 Part of a membrane complex involved in electron transport K03615 - - 2.593e-221 699.0
BYD1_k127_9116919_6 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 571.0
BYD1_k127_9116919_7 NMT1/THI5 like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 551.0
BYD1_k127_9116919_8 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 505.0
BYD1_k127_9116919_9 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 472.0
BYD1_k127_9128773_0 carbohydrate binding - - - 0.0 2100.0
BYD1_k127_9128773_1 Diguanylate cyclase - - - 0.0 1210.0
BYD1_k127_9128773_10 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003266 265.0
BYD1_k127_9128773_11 Prolyl oligopeptidase family K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000045 258.0
BYD1_k127_9128773_12 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004598 244.0
BYD1_k127_9128773_13 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000004973 243.0
BYD1_k127_9128773_14 Periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000000000000001109 157.0
BYD1_k127_9128773_15 Evidence 4 Homologs of previously reported genes of K09700 - - 0.0000000000000000000000000000000002769 133.0
BYD1_k127_9128773_16 Belongs to the UPF0337 (CsbD) family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000214 120.0
BYD1_k127_9128773_18 ribosome binding K05594 - - 0.0000000000000000000426 94.0
BYD1_k127_9128773_19 Protein of unknown function (DUF3309) - - - 0.00000000000000001384 87.0
BYD1_k127_9128773_2 PFAM AsmA family protein K07289,K07290 - - 3.255e-287 894.0
BYD1_k127_9128773_3 cytochrome C peroxidase - - - 1.031e-241 752.0
BYD1_k127_9128773_4 SMART AAA ATPase K02450 - - 4.88e-227 717.0
BYD1_k127_9128773_5 ribonuclease BN K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 366.0
BYD1_k127_9128773_6 crp fnr family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 347.0
BYD1_k127_9128773_7 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 357.0
BYD1_k127_9128773_8 Crp-like helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009951 311.0
BYD1_k127_9128773_9 NAD(P)H-dependent FMN reductase K19784 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005864 300.0
BYD1_k127_9184777_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0 1031.0
BYD1_k127_9184777_1 signal-transduction protein containing cAMP-binding and CBS domains K07216 - - 0.0 1016.0
BYD1_k127_9184777_10 Diguanylate cyclase K21023 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 396.0
BYD1_k127_9184777_11 Voltage-dependent anion channel K03304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 366.0
BYD1_k127_9184777_12 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 313.0
BYD1_k127_9184777_13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 297.0
BYD1_k127_9184777_14 RNA polymerase sigma factor K03087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 295.0
BYD1_k127_9184777_15 response regulator K03413 - - 0.0000000000000000000000000000000000000000000000000000000000001931 214.0
BYD1_k127_9184777_16 Cytochrome C oxidase, cbb3-type, subunit III K08738 - - 0.000000000000000000000000000000007636 130.0
BYD1_k127_9184777_17 SMART PAS domain containing protein - - - 0.000000000000147 81.0
BYD1_k127_9184777_2 carboxylase K01965 - 6.4.1.3 5e-324 1002.0
BYD1_k127_9184777_3 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 5.824e-299 919.0
BYD1_k127_9184777_4 Protein of unknown function, DUF255 K06888 - - 3.105e-226 719.0
BYD1_k127_9184777_5 Aldehyde dehydrogenase family K00128 - 1.2.1.3 3.497e-197 631.0
BYD1_k127_9184777_6 amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004912 533.0
BYD1_k127_9184777_7 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 513.0
BYD1_k127_9184777_8 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005791 464.0
BYD1_k127_9184777_9 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 427.0
BYD1_k127_9197682_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1236.0
BYD1_k127_9197682_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 3.964e-292 904.0
BYD1_k127_9197682_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 283.0
BYD1_k127_9197682_3 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000000002393 237.0
BYD1_k127_9197682_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000001409 85.0
BYD1_k127_9322097_0 The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein K02588 - 1.18.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 404.0
BYD1_k127_9322097_1 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) K05951 - 2.4.2.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005432 374.0
BYD1_k127_9322325_0 Cation transporter/ATPase, N-terminus K01539 - 3.6.3.9 0.0 1260.0
BYD1_k127_9322325_1 Bacterial protein of unknown function (DUF853) K06915 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 544.0
BYD1_k127_9322325_2 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 424.0
BYD1_k127_9322325_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007157 357.0
BYD1_k127_9322325_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000002549 66.0
BYD1_k127_9387398_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. K02584 - - 7.072e-227 711.0
BYD1_k127_9387398_1 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 612.0
BYD1_k127_9387398_10 PFAM Chemotaxis methyl-accepting receptor, signalling K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000146 236.0
BYD1_k127_9387398_11 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000000000000000000000000000000000000000000000648 201.0
BYD1_k127_9387398_12 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000002482 196.0
BYD1_k127_9387398_13 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000207 192.0
BYD1_k127_9387398_14 spore germination K03605,K04656,K08315 - 3.4.23.51 0.000000000000000003153 91.0
BYD1_k127_9387398_2 Methyl-accepting chemotaxis protein (MCP) signaling domain K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 612.0
BYD1_k127_9387398_3 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000581 545.0
BYD1_k127_9387398_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 522.0
BYD1_k127_9387398_5 Histidine kinase K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 515.0
BYD1_k127_9387398_6 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 541.0
BYD1_k127_9387398_7 NADH ubiquinone oxidoreductase 20 kDa subunit K06282 - 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 415.0
BYD1_k127_9387398_8 response regulator K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007102 375.0
BYD1_k127_9387398_9 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002374 262.0
BYD1_k127_9408002_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005569 581.0
BYD1_k127_9408002_1 Domain of unknown function (DUF3391) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 458.0
BYD1_k127_9408002_2 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 429.0
BYD1_k127_9408002_3 ABC-3 protein K02075 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000556 354.0
BYD1_k127_9408002_4 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 314.0
BYD1_k127_9432487_0 Major Facilitator Superfamily K08177 - - 1.349e-306 945.0
BYD1_k127_9432487_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 4.611e-280 868.0
BYD1_k127_9432487_2 DNA polymerase K02347 - - 2.305e-259 810.0
BYD1_k127_9432487_3 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 580.0
BYD1_k127_9432487_4 ABC transporter K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005579 519.0
BYD1_k127_9432487_5 Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 451.0
BYD1_k127_9432487_6 Histidine kinase K20975 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 462.0
BYD1_k127_9432487_7 May be involved in recombination K03554 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004317 384.0
BYD1_k127_9432487_8 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000263 246.0
BYD1_k127_9432487_9 - - - - 0.00000002245 57.0
BYD1_k127_9515950_0 Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily K03615 - - 6.134e-235 745.0
BYD1_k127_9515950_1 Part of a membrane complex involved in electron transport K03614 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 567.0
BYD1_k127_9515950_2 Part of a membrane complex involved in electron transport K03613 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 364.0
BYD1_k127_9515950_3 Part of a membrane complex involved in electron transport K03617 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 313.0
BYD1_k127_9515950_4 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001978 282.0
BYD1_k127_9515950_5 Positive regulator of sigma(E), RseC/MucC K03803 - - 0.000000000000000000000000000000000000004335 152.0
BYD1_k127_961218_0 protein conserved in bacteria K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 629.0
BYD1_k127_961218_1 TIGRFAM decaheme c-type cytochrome, DmsE family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 458.0
BYD1_k127_961218_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004556 472.0
BYD1_k127_961218_3 Tar ligand binding domain homologue K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 331.0
BYD1_k127_961218_4 Outer membrane protein, OMP85 family K07278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 323.0
BYD1_k127_961218_5 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 300.0
BYD1_k127_961218_6 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000395 285.0
BYD1_k127_961218_7 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000003788 243.0
BYD1_k127_961218_8 Cytochrome c K08738 - - 0.00000000000000000000000000000000000000000009659 162.0
BYD1_k127_961218_9 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000000000000002286 119.0
BYD1_k127_9654971_0 Sodium:solute symporter family K14393 - - 3.193e-319 994.0
BYD1_k127_9654971_1 PFAM Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase - - - 2.883e-316 983.0
BYD1_k127_9654971_10 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000001549 222.0
BYD1_k127_9654971_11 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000001133 220.0
BYD1_k127_9654971_12 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.0000000000000000000000000000000000000000000005656 173.0
BYD1_k127_9654971_13 Transcriptional regulatory protein, C terminal K07666 - - 0.00000000000000000000000000000000000000000000499 172.0
BYD1_k127_9654971_14 Protein of unknown function, DUF485 - - - 0.000000000000000000000000000000000007645 139.0
BYD1_k127_9654971_15 - - - - 0.00000000000000000000000000000000002921 136.0
BYD1_k127_9654971_16 Domain of unknown function (DUF4212) - - - 0.0000000000000000000000000000000000549 138.0
BYD1_k127_9654971_17 amino acid transport K02030 - - 0.00000000000000002202 92.0
BYD1_k127_9654971_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 5.216e-284 884.0
BYD1_k127_9654971_3 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 595.0
BYD1_k127_9654971_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 588.0
BYD1_k127_9654971_5 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 538.0
BYD1_k127_9654971_6 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008976 487.0
BYD1_k127_9654971_7 Fructosamine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000863 300.0
BYD1_k127_9654971_8 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 303.0
BYD1_k127_9654971_9 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 292.0
BYD1_k127_9693670_0 PD-(D/E)XK nuclease superfamily - - - 0.0 1042.0
BYD1_k127_9693670_1 RecB family exonuclease K01144 - 3.1.11.5 2.509e-221 724.0
BYD1_k127_9693670_2 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009758 449.0
BYD1_k127_9693670_3 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 317.0
BYD1_k127_9693670_4 PFAM Transcriptional regulator, histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008087 273.0
BYD1_k127_9693670_5 response regulator K02485 - - 0.000000000000000000000000000000000000000000000000000000000002013 213.0
BYD1_k127_9693670_6 PAS fold - - - 0.000000000000000000000000000000000000000000004316 173.0
BYD1_k127_9856546_0 COG1982 Arginine lysine ornithine decarboxylases K01584 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 603.0
BYD1_k127_9856546_1 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 374.0
BYD1_k127_9856546_2 Glutaredoxin - - - 0.00000000000000001361 94.0
BYD1_k127_9953632_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates - - - 2.21e-298 925.0
BYD1_k127_9953632_1 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 GO:0000302,GO:0001505,GO:0003674,GO:0003824,GO:0004601,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016661,GO:0016684,GO:0017144,GO:0034641,GO:0042133,GO:0042135,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0044237,GO:0044248,GO:0044270,GO:0046209,GO:0046210,GO:0046677,GO:0050418,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748,GO:2001057 1.7.99.1 6.437e-291 900.0
BYD1_k127_9953632_10 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000005656 228.0
BYD1_k127_9953632_11 Chemoreceptor zinc-binding domain - - - 0.000000000000000000000000000000000000000000000000001697 201.0
BYD1_k127_9953632_12 COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.00000000000000000000000000000000000000000000000001267 184.0
BYD1_k127_9953632_14 COG2104 Sulfur transfer protein involved in thiamine biosynthesis K03154 - - 0.00000000000000000003304 91.0
BYD1_k127_9953632_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - - 1.978e-226 719.0
BYD1_k127_9953632_3 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 533.0
BYD1_k127_9953632_4 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 511.0
BYD1_k127_9953632_5 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009835 451.0
BYD1_k127_9953632_6 Oxidoreductase FAD-binding domain K16161 GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0008150,GO:0008152,GO:0009987,GO:0015049,GO:0015050,GO:0015947,GO:0016491,GO:0016705,GO:0016709,GO:0032991,GO:0043446,GO:0044237,GO:0055114,GO:0071704,GO:1902494 1.14.13.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 413.0
BYD1_k127_9953632_7 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 345.0
BYD1_k127_9953632_8 PFAM Pyruvate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006001 269.0
BYD1_k127_9953632_9 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000004851 242.0
BYD1_k127_9974676_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 8.321e-259 809.0
BYD1_k127_9974676_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 607.0
BYD1_k127_9974676_11 His Kinase A (phosphoacceptor) domain K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 319.0
BYD1_k127_9974676_12 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 294.0
BYD1_k127_9974676_14 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003258 277.0
BYD1_k127_9974676_15 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008287 270.0
BYD1_k127_9974676_16 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001082 256.0
BYD1_k127_9974676_17 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001851 252.0
BYD1_k127_9974676_18 Predicted metal-dependent hydrolase K07044 - - 0.000000000000000000000000000000000000000000000000000000000000000000003219 246.0
BYD1_k127_9974676_19 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000000000000000000000005538 222.0
BYD1_k127_9974676_2 COG0618 Exopolyphosphatase-related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 539.0
BYD1_k127_9974676_20 periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000000000000000000000000000000000000004883 225.0
BYD1_k127_9974676_21 Cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000008296 214.0
BYD1_k127_9974676_22 - - - - 0.00000000000000000000000000000000000000000000000000000000001874 219.0
BYD1_k127_9974676_24 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000003773 168.0
BYD1_k127_9974676_25 Domain of unknown function (DUF1924) - - - 0.0000000000000000000000000000000000000000008244 161.0
BYD1_k127_9974676_26 cell adhesion involved in biofilm formation K20276 - - 0.0000000000000000000000000000000000000002296 162.0
BYD1_k127_9974676_27 HIRAN - - - 0.00000000000000000000000000000000000031 143.0
BYD1_k127_9974676_28 Dihaem cytochrome c - - - 0.00000000000000000000000000000000004426 143.0
BYD1_k127_9974676_29 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000004378 136.0
BYD1_k127_9974676_3 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006958 525.0
BYD1_k127_9974676_30 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.0000000000000000000000000008549 114.0
BYD1_k127_9974676_31 1-phosphatidylinositol-4-phosphate 5-kinase activity K14972 - - 0.00000000000000000000000007456 121.0
BYD1_k127_9974676_32 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000938 100.0
BYD1_k127_9974676_33 nuclease activity K07460 - - 0.0000000000000003832 91.0
BYD1_k127_9974676_34 - - - - 0.000000000000001234 78.0
BYD1_k127_9974676_35 - - - - 0.00000000002441 73.0
BYD1_k127_9974676_36 High potential iron-sulfur protein - - - 0.00001132 58.0
BYD1_k127_9974676_37 - - - - 0.0005687 47.0
BYD1_k127_9974676_4 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 522.0
BYD1_k127_9974676_5 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 511.0
BYD1_k127_9974676_6 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 482.0
BYD1_k127_9974676_7 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008423 418.0
BYD1_k127_9974676_8 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007483 397.0
BYD1_k127_9974676_9 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009388 331.0
BYD1_k127_9978550_0 Sulfide dehydrogenase K17218,K17229 - 1.8.2.3,1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 439.0
BYD1_k127_9978550_1 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000401 121.0