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Overview

ID MAG00108
Name BYD3_bin.18
Sample SMP0003
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Burkholderiaceae
Genus Hydrogenophaga
Species Hydrogenophaga taeniospiralis
Assembly information
Completeness (%) 71.15
Contamination (%) 1.67
GC content (%) 67.0
N50 (bp) 4,882
Genome size (bp) 3,064,913

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3399

Gene name Description KEGG GOs EC E-value Score Sequence
BYD3_k127_1009695_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 2.379e-198 621.0
BYD3_k127_1009695_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 415.0
BYD3_k127_1009695_2 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 GO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009507,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019953,GO:0022414,GO:0030154,GO:0030170,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0036094,GO:0040007,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0048037,GO:0048046,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050662,GO:0050896,GO:0051704,GO:0060560,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 348.0
BYD3_k127_1009695_3 PFAM NUDIX hydrolase K03426 - 3.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006765 282.0
BYD3_k127_1009695_4 Belongs to the sulfur carrier protein TusA family K04085 - - 0.000000000000000000000000000001772 126.0
BYD3_k127_1016583_0 Glycosyl hydrolase family 65, N-terminal domain K15923 - 3.2.1.51 0.0 1091.0
BYD3_k127_1016583_1 MgtC family K07507 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007726 282.0
BYD3_k127_1016583_2 Putative heavy-metal chelation - - - 0.0000000000000000000000000000000000000000000000000000000000000000005755 237.0
BYD3_k127_1016583_3 Protein of unknown function (DUF1566) - - - 0.00000000000000000000000000000000000001097 162.0
BYD3_k127_1016583_4 Peptidase family U32 K08303 - - 0.00000000000000001235 82.0
BYD3_k127_1017192_0 TonB dependent receptor K02014 - - 0.0 1198.0
BYD3_k127_1017192_1 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 482.0
BYD3_k127_1017192_2 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008789 382.0
BYD3_k127_1017192_3 PGAP1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000176 252.0
BYD3_k127_1017192_4 Domain of unknown function (DUF4154) - - - 0.00000000000000000000000000000000000000000000000000000000000000003372 244.0
BYD3_k127_1021043_0 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 4.586e-261 812.0
BYD3_k127_1021043_1 COG0714 MoxR-like ATPases K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 434.0
BYD3_k127_1021043_2 Cytochrome c K02305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 381.0
BYD3_k127_1021043_3 PFAM von Willebrand factor type A K02448 - - 0.000000000000000000000000000000000000000000000000000000000000000001166 237.0
BYD3_k127_1021043_4 transcriptional regulator, ModE family K02019 - - 0.0000000000000000000000001515 109.0
BYD3_k127_1026128_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 339.0
BYD3_k127_1026128_1 Member of a two-component regulatory system K07644 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 345.0
BYD3_k127_1026128_2 PFAM thioesterase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000353 250.0
BYD3_k127_1026128_3 Domain of unknown function (DUF4148) - - - 0.0000000000000000000009341 99.0
BYD3_k127_1032578_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5.767e-304 941.0
BYD3_k127_1032578_1 Bacterial protein of unknown function (DUF898) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 334.0
BYD3_k127_1032578_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions - - - 0.00000000000000000000000000000000004051 139.0
BYD3_k127_1032578_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000001175 132.0
BYD3_k127_1032578_4 - - - - 0.00000000000000000000000000292 115.0
BYD3_k127_1032578_5 Peptidase family M48 - - - 0.000000000000000000002643 96.0
BYD3_k127_1035461_0 Chemotaxis sensory transducer K03406 - - 4.788e-202 643.0
BYD3_k127_1035461_1 Tetrapyrrole (Corrin/Porphyrin) Methylases K05936 - 2.1.1.133,2.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 461.0
BYD3_k127_1035461_2 CbiX K03795 - 4.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 427.0
BYD3_k127_1035461_3 PFAM Alpha beta hydrolase fold-3 domain protein K01066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 413.0
BYD3_k127_1035461_4 Amino acid amide ABC transporter substrate-binding protein, HAAT family - - - 0.0000000000000000003214 96.0
BYD3_k127_1052411_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 2.05e-233 734.0
BYD3_k127_1052411_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 450.0
BYD3_k127_1052411_2 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 387.0
BYD3_k127_1052411_3 Belongs to the DnaA family K10763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008153 336.0
BYD3_k127_1052411_4 HAD-superfamily hydrolase, subfamily IB, PSPase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 314.0
BYD3_k127_1052411_5 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006632 250.0
BYD3_k127_1052411_6 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000000000000009077 193.0
BYD3_k127_1052411_7 AIR synthase related protein domain protein K01933 - 6.3.3.1 0.0002263 53.0
BYD3_k127_1058341_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1071.0
BYD3_k127_1058341_1 UPF0114 protein - - - 0.0000000000000000000000000000000000007778 143.0
BYD3_k127_1059092_0 RIO1 family K07178 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006862 471.0
BYD3_k127_1059092_1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000682 244.0
BYD3_k127_1059092_2 Transcriptional regulator - - - 0.00000000002511 64.0
BYD3_k127_1059862_0 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 440.0
BYD3_k127_1059862_1 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005404 261.0
BYD3_k127_1059862_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000001896 189.0
BYD3_k127_1059862_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000002342 82.0
BYD3_k127_1072070_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1334.0
BYD3_k127_1072070_1 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 541.0
BYD3_k127_1072070_2 PFAM N-acetylmuramoyl-L-alanine amidase family 2 K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 295.0
BYD3_k127_1086628_0 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 312.0
BYD3_k127_1086628_1 - - - - 0.00000000000000000000000006103 115.0
BYD3_k127_1099937_0 Protein of unknown function (DUF1348) K09958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003728 277.0
BYD3_k127_1099937_1 Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide K01725 - 4.2.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000005016 259.0
BYD3_k127_1099937_2 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000001164 176.0
BYD3_k127_1099937_3 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049,K15578 - - 0.00000000000000000000000000000007675 124.0
BYD3_k127_1099937_4 SpoVT / AbrB like domain - - - 0.0000000000000000000004307 98.0
BYD3_k127_1101635_0 NADH flavin oxidoreductase NADH oxidase K10680 GO:0000003,GO:0000302,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009607,GO:0009620,GO:0009694,GO:0009695,GO:0009791,GO:0009908,GO:0009987,GO:0010035,GO:0010193,GO:0010817,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016629,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0042221,GO:0042445,GO:0042446,GO:0042493,GO:0042579,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046677,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0055114,GO:0061458,GO:0065007,GO:0065008,GO:0071704,GO:0072330,GO:0090567,GO:0099402,GO:1901576,GO:1901700 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 599.0
BYD3_k127_1101635_1 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 310.0
BYD3_k127_1101635_2 Thermostable hemolysin - - - 0.000000000000000000000000000000000000000000000000000000000002441 219.0
BYD3_k127_1101635_3 TIGRFAM death-on-curing family protein K07341 - - 0.0000000000000000000000000000000000000000000000003791 179.0
BYD3_k127_1101635_4 Protein of unknown function (DUF454) K09790 - - 0.0000000000000000000000000000000000002769 151.0
BYD3_k127_1101635_5 SpoVT / AbrB like domain - - - 0.000000000000000000000000000000000001722 138.0
BYD3_k127_1101635_6 Invasion gene expression up-regulator, SirB - - - 0.00000000000000000000000000000000003131 143.0
BYD3_k127_1101635_7 protein, possibly involved in aromatic compounds catabolism K02614 - - 0.0000000000000009243 79.0
BYD3_k127_1111609_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008663 532.0
BYD3_k127_1111609_1 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004097 280.0
BYD3_k127_1111609_2 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000001616 190.0
BYD3_k127_1130205_0 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 581.0
BYD3_k127_1130205_1 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 538.0
BYD3_k127_1130205_2 PFAM PTS system fructose subfamily IIA component K02821 - 2.7.1.194 0.0000000000000000000000000000000000000000000000000000000000086 231.0
BYD3_k127_1130205_3 - - - - 0.00000000000000000000000000000004391 143.0
BYD3_k127_1130205_4 TIGRFAM phosphocarrier, HPr family K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000002555 122.0
BYD3_k127_1130205_5 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00001857 47.0
BYD3_k127_1148243_0 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 494.0
BYD3_k127_1148243_1 PFAM Type II secretion system protein E K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008126 382.0
BYD3_k127_1148243_2 PFAM aminotransferase, class I and II K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000008302 241.0
BYD3_k127_1152318_0 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 584.0
BYD3_k127_1152318_1 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 532.0
BYD3_k127_1152318_2 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005378 401.0
BYD3_k127_1152318_3 NnrU protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001666 244.0
BYD3_k127_1163385_0 two component, sigma54 specific, transcriptional regulator, Fis family K10126 - - 1.977e-220 691.0
BYD3_k127_1163385_1 PFAM ATP-binding region, ATPase domain protein K10125 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 357.0
BYD3_k127_1166787_0 oxidoreductase FAD NAD(P)-binding domain protein K00523 - 1.17.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 571.0
BYD3_k127_1166787_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 451.0
BYD3_k127_1166787_2 Nad-dependent epimerase dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005053 434.0
BYD3_k127_1166787_3 Electron transport protein SCO1 SenC K07152 - - 0.0000000000000000000000000000000000000000000000001808 177.0
BYD3_k127_1166787_5 antiporter K07301 - - 0.000000006023 57.0
BYD3_k127_1180350_0 Periplasmic binding proteins and sugar binding domain of LacI family K02058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009593 509.0
BYD3_k127_1180350_1 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008038 471.0
BYD3_k127_1180350_2 Oxidoreductase family, NAD-binding Rossmann fold K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 367.0
BYD3_k127_1180350_3 Helix-turn-helix domain, rpiR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 335.0
BYD3_k127_1180350_4 ABC transporter K02056 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000001091 197.0
BYD3_k127_1184947_0 TIGRFAM sulfate ABC transporter, periplasmic sulfate-binding protein K02048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 572.0
BYD3_k127_1184947_1 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 566.0
BYD3_k127_1184947_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000000000000000000000000000000000003747 177.0
BYD3_k127_1184947_3 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.00000000000000000000000000000000001274 145.0
BYD3_k127_1184947_4 polar amino acid ABC transporter, inner membrane subunit K02029,K10023 - - 0.00000000000000000000000000000000005888 134.0
BYD3_k127_1188000_0 Transport of potassium into the cell K03549 - - 0.0 1077.0
BYD3_k127_1188000_1 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 326.0
BYD3_k127_1196144_0 Nad-dependent epimerase dehydratase K15856,K22252 - 1.1.1.135,1.1.1.281 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 366.0
BYD3_k127_1196144_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 331.0
BYD3_k127_1196144_2 Subtilase family - - - 0.000005564 56.0
BYD3_k127_1201388_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007273 426.0
BYD3_k127_1201388_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 404.0
BYD3_k127_1201388_2 PrpF protein K16514 - 5.3.2.8 0.0000000000000000000004966 96.0
BYD3_k127_1214627_0 Aldehyde dehydrogenase family K13877,K14519 - 1.2.1.26,1.2.1.4 8.814e-216 686.0
BYD3_k127_1214627_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000003544 237.0
BYD3_k127_1214627_2 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000000000000000000000000000000000000000000000000000001429 201.0
BYD3_k127_1214627_3 regulatory protein GntR HTH K05799 - - 0.0000000000000000000000000000000000000000000000000001266 187.0
BYD3_k127_1222049_0 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002575 410.0
BYD3_k127_1222049_1 - - - - 0.0000000000000000000000000000000000000002413 159.0
BYD3_k127_1222049_2 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000005486 115.0
BYD3_k127_1222049_3 PFAM Acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000002225 55.0
BYD3_k127_1222049_4 - - - - 0.00002986 56.0
BYD3_k127_1226831_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 1.839e-228 718.0
BYD3_k127_1226831_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 599.0
BYD3_k127_1226831_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006713 467.0
BYD3_k127_1226831_3 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000000000000000000000000000166 147.0
BYD3_k127_1226831_4 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000000000001493 136.0
BYD3_k127_1226831_5 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000001738 85.0
BYD3_k127_1228822_0 Nucleoside H+ symporter K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008313 550.0
BYD3_k127_1228822_1 PFAM Rhomboid family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191 487.0
BYD3_k127_1228822_2 helix_turn_helix isocitrate lyase regulation K02624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007035 364.0
BYD3_k127_1228822_3 competence protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 371.0
BYD3_k127_1228822_4 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 306.0
BYD3_k127_1228822_5 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000004222 96.0
BYD3_k127_1251810_0 Major facilitator superfamily - - - 7.898e-211 667.0
BYD3_k127_1251810_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 300.0
BYD3_k127_1251810_2 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003974 278.0
BYD3_k127_1251810_3 PFAM Dual specificity protein phosphatase K14165 - 3.1.3.16,3.1.3.48 0.000000000000000000000000000000000000000000000000000000000000000008203 232.0
BYD3_k127_1251810_4 Conserved hypothetical ATP binding protein K06945 - - 0.00000000000000000000000000000000000000000000000009803 183.0
BYD3_k127_1251810_5 - - - - 0.00000000000000000000000000000000000000000001948 180.0
BYD3_k127_1251810_6 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000473 140.0
BYD3_k127_1254566_0 SPFH domain-Band 7 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 351.0
BYD3_k127_1254566_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000106 192.0
BYD3_k127_1254566_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000008989 171.0
BYD3_k127_1254566_3 PFAM Secreted repeat of - - - 0.00000000000000000000000000000008902 131.0
BYD3_k127_1263127_0 Belongs to the inositol monophosphatase superfamily K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009405 460.0
BYD3_k127_1263127_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 349.0
BYD3_k127_1263127_2 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000001452 196.0
BYD3_k127_1263615_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138,K18303 - - 0.0 1264.0
BYD3_k127_1263615_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family - - - 1.18e-246 769.0
BYD3_k127_1263615_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 542.0
BYD3_k127_1263615_3 regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 342.0
BYD3_k127_1263615_4 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000001791 132.0
BYD3_k127_1264308_0 PFAM amidohydrolase K18456 - 3.5.4.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004809 402.0
BYD3_k127_1264308_1 EamA-like transporter family K15269 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007141 248.0
BYD3_k127_1264308_2 COG1522 Transcriptional regulators K03719 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009744 241.0
BYD3_k127_1264308_3 - - - - 0.00000000000004212 76.0
BYD3_k127_1279125_0 CO dehydrogenase flavoprotein domain protein K13481 - 1.17.1.4 6.559e-203 646.0
BYD3_k127_1279125_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 501.0
BYD3_k127_1279125_2 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K13482 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007217 308.0
BYD3_k127_1280095_0 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 469.0
BYD3_k127_1280095_1 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 281.0
BYD3_k127_1280095_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001471 279.0
BYD3_k127_1280095_3 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000414 150.0
BYD3_k127_12816_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009415 615.0
BYD3_k127_12816_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003821 563.0
BYD3_k127_12816_2 histidine kinase A domain protein K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 525.0
BYD3_k127_12816_3 TIGRFAM phosphate ABC transporter, inner membrane subunit PstA K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 492.0
BYD3_k127_12816_4 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 469.0
BYD3_k127_12816_5 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 470.0
BYD3_k127_12816_6 TIGRFAM phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 407.0
BYD3_k127_12816_7 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008158 327.0
BYD3_k127_1305669_0 PFAM extracellular solute-binding protein family 1 K02055 - - 2.886e-197 619.0
BYD3_k127_1305669_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 555.0
BYD3_k127_1305669_2 binding-protein-dependent transport systems inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 498.0
BYD3_k127_1305669_3 binding-protein-dependent transport systems inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 424.0
BYD3_k127_1305669_4 2OG-Fe dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008638 369.0
BYD3_k127_1305669_5 Predicted integral membrane protein (DUF2189) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 317.0
BYD3_k127_1305669_6 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000003135 208.0
BYD3_k127_1305669_7 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000496 178.0
BYD3_k127_1305669_8 PFAM Hemerythrin HHE cation binding domain protein - - - 0.000000000000000000000000000000000000003567 153.0
BYD3_k127_131845_0 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 3.325e-222 694.0
BYD3_k127_131845_1 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006139,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009108,GO:0009117,GO:0009165,GO:0009308,GO:0009310,GO:0009435,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019441,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0020037,GO:0022607,GO:0034641,GO:0034654,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043648,GO:0043650,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0046906,GO:0048037,GO:0051186,GO:0051188,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 359.0
BYD3_k127_131845_2 Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation K07130 GO:0003674,GO:0003824,GO:0004061,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043167,GO:0043169,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 343.0
BYD3_k127_131845_3 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000009363 229.0
BYD3_k127_1318576_0 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001734 278.0
BYD3_k127_1318576_1 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009213 268.0
BYD3_k127_1318576_2 AMP-binding enzyme K01895 - 6.2.1.1 0.00000000000000000002147 90.0
BYD3_k127_1318576_3 Belongs to the ompA family K03286 - - 0.00000000002862 76.0
BYD3_k127_1324498_0 Elongator protein 3, MiaB family, Radical SAM - - - 1.72e-304 942.0
BYD3_k127_1324498_1 Proteobacterial lipase chaperone protein - - - 0.00000000000000000000000000000000000000000000000000005448 198.0
BYD3_k127_133604_0 Chromate resistance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005878 426.0
BYD3_k127_133604_1 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001328 281.0
BYD3_k127_133604_2 LTXXQ motif family protein - - - 0.00000000006862 70.0
BYD3_k127_1354114_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 509.0
BYD3_k127_1354114_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004857 408.0
BYD3_k127_1354114_2 Transglycosylase SLT domain K03194 - - 0.00000000000000000000000000000000000000000000000000000000002405 215.0
BYD3_k127_1354566_0 Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides K00364 - 1.7.1.7 4.959e-202 634.0
BYD3_k127_1354566_1 Carboxylesterase family K01432 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 399.0
BYD3_k127_1354566_2 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008882 271.0
BYD3_k127_1354566_3 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.000000000000000000000000000419 115.0
BYD3_k127_1361878_0 N-acylglucosamine 2-epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789 589.0
BYD3_k127_1361878_1 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 487.0
BYD3_k127_1361878_2 Protein of unknown function (DUF455) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009986 342.0
BYD3_k127_1361878_3 HWE histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655 340.0
BYD3_k127_1361878_4 transferase hexapeptide - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009433 302.0
BYD3_k127_1361878_5 AAA domain - - - 0.0000000000000000000006712 98.0
BYD3_k127_1363347_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 2.824e-197 617.0
BYD3_k127_1363347_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 518.0
BYD3_k127_1363347_2 histidine kinase HAMP region domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 436.0
BYD3_k127_1363347_3 Two component transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002864 371.0
BYD3_k127_1363347_4 amp-dependent synthetase and ligase K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 346.0
BYD3_k127_1363347_5 - - - - 0.000000000000000000000000000000000000000000508 176.0
BYD3_k127_1363347_6 Zinc-finger domain - - - 0.000000000000000000000000000000003085 131.0
BYD3_k127_1363347_7 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.000000000000000000000000004875 124.0
BYD3_k127_1368942_0 TOBE domain K02019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 343.0
BYD3_k127_1368942_1 Dinitrogenase iron-molybdenum cofactor - - - 0.000000000000000000000000000000000000000000000000000000000000000003588 227.0
BYD3_k127_1368942_2 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000002304 209.0
BYD3_k127_1368942_3 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000000004388 162.0
BYD3_k127_1368942_4 Small multidrug resistance protein K03297 - - 0.00000000000000000000000000000000000000008806 154.0
BYD3_k127_1368942_5 SIR2-like domain - - - 0.00000000002812 64.0
BYD3_k127_1374842_0 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 501.0
BYD3_k127_1374842_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003216 280.0
BYD3_k127_1374842_2 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000154 261.0
BYD3_k127_1374842_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000000000000000000000005557 244.0
BYD3_k127_1376439_0 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 392.0
BYD3_k127_1376439_1 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 335.0
BYD3_k127_1378332_0 Type IV secretory system Conjugative DNA transfer K03205 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001632 291.0
BYD3_k127_1379463_0 SMART Rhodanese domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008559 599.0
BYD3_k127_1379463_1 Aminotransferase class I and II K10915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 486.0
BYD3_k127_1379463_2 Polyphosphate kinase 2 (PPK2) K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 426.0
BYD3_k127_1379463_3 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 343.0
BYD3_k127_1379463_4 Metal-sensitive transcriptional repressor K21600 - - 0.0000000000000000000000000004573 122.0
BYD3_k127_1387208_0 PFAM peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003493 501.0
BYD3_k127_1387208_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 288.0
BYD3_k127_1387208_2 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 283.0
BYD3_k127_1387208_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009241 243.0
BYD3_k127_1387208_4 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000007415 243.0
BYD3_k127_1387208_5 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008128 237.0
BYD3_k127_1387208_6 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000000000000000000002586 202.0
BYD3_k127_1387208_7 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.000000001675 63.0
BYD3_k127_1396317_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 1.744e-203 634.0
BYD3_k127_1396317_1 PFAM AFG1-family ATPase K06916 - - 5.019e-194 609.0
BYD3_k127_1396317_2 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 408.0
BYD3_k127_1396317_3 Helicase c2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 336.0
BYD3_k127_1415048_0 Tryptophan halogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 588.0
BYD3_k127_1415048_1 Glycosyltransferase like family 2 K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 418.0
BYD3_k127_1415048_2 MltA-interacting protein MipA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 398.0
BYD3_k127_1415048_3 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 338.0
BYD3_k127_1422003_0 Bacterial regulatory protein, Fis family K10126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 534.0
BYD3_k127_1422003_1 Integral membrane sensor signal transduction histidine kinase K10125 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 441.0
BYD3_k127_1422003_2 NMT1-like family K07080 - - 0.000000000000000000000002352 119.0
BYD3_k127_1426792_0 of the alpha beta superfamily K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 347.0
BYD3_k127_1426792_1 MAPEG family - - - 0.00000000000000000000000005737 120.0
BYD3_k127_1426792_2 - - - - 0.000000000000000000001888 97.0
BYD3_k127_1426792_3 Glyoxalase-like domain K01759 - 4.4.1.5 0.000000000000000000002035 94.0
BYD3_k127_1432893_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 3.537e-219 686.0
BYD3_k127_1432893_1 PFAM ATP-binding region, ATPase domain protein K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 548.0
BYD3_k127_1432893_2 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 319.0
BYD3_k127_1432893_3 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000006193 182.0
BYD3_k127_1432893_4 - K06950 - - 0.000000000000000003937 89.0
BYD3_k127_1436441_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 300.0
BYD3_k127_1436441_1 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000000000000000105 156.0
BYD3_k127_1436441_2 Belongs to the UPF0125 (RnfH) family K03154,K09801 - - 0.000000000000000000000000004672 113.0
BYD3_k127_1436441_3 Cyclase dehydrase - - - 0.0000000002329 61.0
BYD3_k127_1468072_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 1.052e-296 920.0
BYD3_k127_1468072_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 3.803e-207 646.0
BYD3_k127_1468072_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000000000000000000000000000003313 212.0
BYD3_k127_1468072_3 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000000000000000000704 132.0
BYD3_k127_1472686_0 ABC transporter K02028,K10004 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 391.0
BYD3_k127_1472686_1 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K10002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 336.0
BYD3_k127_1472686_2 Amino acid ABC transporter substrate-binding protein K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 291.0
BYD3_k127_1472686_3 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K10003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000218 257.0
BYD3_k127_1472686_4 EamA-like transporter family K15269 - - 0.000000000000000000001488 95.0
BYD3_k127_1487736_0 PFAM Pyrrolo-quinoline quinone K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000171 218.0
BYD3_k127_1487736_1 cytochrome C K08738 - - 0.000000000000000000000000003112 113.0
BYD3_k127_149344_0 Signal transduction histidine kinase K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 558.0
BYD3_k127_149344_1 response regulator K07715 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 397.0
BYD3_k127_149344_2 - - - - 0.000000000000000000000000000001874 133.0
BYD3_k127_1493574_0 PFAM DNA photolyase, FAD-binding K01669 - 4.1.99.3 1.604e-194 615.0
BYD3_k127_1493574_1 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008892 307.0
BYD3_k127_1493574_2 phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000007952 234.0
BYD3_k127_1493574_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000000000000000006868 216.0
BYD3_k127_1493574_4 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000001744 196.0
BYD3_k127_1505178_0 Putative zinc-binding metallo-peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 454.0
BYD3_k127_1505178_1 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 341.0
BYD3_k127_1505178_2 Histidine kinase K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 337.0
BYD3_k127_1505178_3 PFAM Hemerythrin HHE cation binding domain protein - - - 0.0000000000000000000000000000000000000003726 154.0
BYD3_k127_1505178_6 PFAM Lipocalin family protein K03098 - - 0.0000000002707 67.0
BYD3_k127_1505178_7 PFAM Short-chain dehydrogenase reductase SDR K00059,K00076 - 1.1.1.100,1.1.1.159 0.0000001353 59.0
BYD3_k127_152770_0 PFAM aminotransferase, class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000692 584.0
BYD3_k127_152770_1 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 328.0
BYD3_k127_152770_2 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007932 297.0
BYD3_k127_152770_3 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000454 213.0
BYD3_k127_152770_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000124 221.0
BYD3_k127_152770_5 Putative quorum-sensing-regulated virulence factor K09954 - - 0.000000000000000000000000000004895 132.0
BYD3_k127_152770_6 3'-5' exonuclease - - - 0.00000000000000000000000006812 107.0
BYD3_k127_152842_0 luxR family - - - 0.000000000000002198 90.0
BYD3_k127_1532231_0 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 5.742e-252 788.0
BYD3_k127_1532231_1 - - - - 2.177e-221 694.0
BYD3_k127_1557586_0 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 387.0
BYD3_k127_1557586_1 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000008576 240.0
BYD3_k127_1570115_0 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 387.0
BYD3_k127_1570115_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008646 248.0
BYD3_k127_1570115_2 - - - - 0.0000000000000000000000000000000000000000007455 162.0
BYD3_k127_1570115_3 Belongs to the NifD NifK NifE NifN family K02587 - - 0.00000000000005654 72.0
BYD3_k127_1579429_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0 1040.0
BYD3_k127_1579429_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 8.961e-213 680.0
BYD3_k127_1579429_10 CNP1-like family - - - 0.00000000000000000000000000005978 124.0
BYD3_k127_1579429_11 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.000000000000000002958 84.0
BYD3_k127_1579429_12 - - - - 0.00000000001364 68.0
BYD3_k127_1579429_2 Belongs to the ABC transporter superfamily K05816,K10111,K10112 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 565.0
BYD3_k127_1579429_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 544.0
BYD3_k127_1579429_4 PFAM AAA ATPase central domain protein K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 513.0
BYD3_k127_1579429_5 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005922 367.0
BYD3_k127_1579429_6 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 362.0
BYD3_k127_1579429_7 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 324.0
BYD3_k127_1579429_8 PFAM Lytic transglycosylase catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 294.0
BYD3_k127_1579429_9 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000000000000000000000001061 202.0
BYD3_k127_158949_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0 1060.0
BYD3_k127_158949_1 Domain of unknown function (DUF1850) - - - 0.0000000000000000000000000000000000000000002383 182.0
BYD3_k127_158949_2 Auxin Efflux Carrier K07088 - - 0.00000000001643 72.0
BYD3_k127_1604896_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006471 498.0
BYD3_k127_1604896_1 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 467.0
BYD3_k127_1608790_0 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 300.0
BYD3_k127_1608790_1 COG0671 Membrane-associated phospholipid phosphatase - - - 0.000000000000000000000000000000000000000000003478 182.0
BYD3_k127_1635814_0 Male sterility protein - - - 0.0 1060.0
BYD3_k127_1635814_1 PFAM poly granule associated family protein - - - 0.0000000000000000000000000000000000000000000000000000009237 200.0
BYD3_k127_1642998_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.0 1030.0
BYD3_k127_1642998_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005553 585.0
BYD3_k127_1642998_2 Adenylate cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 529.0
BYD3_k127_1642998_3 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008035 362.0
BYD3_k127_1642998_4 PFAM Forkhead-associated protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 305.0
BYD3_k127_1642998_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000008174 175.0
BYD3_k127_1652607_0 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007732 271.0
BYD3_k127_1652607_1 Cyclase dehydrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003888 239.0
BYD3_k127_1652607_2 PFAM Secreted repeat of - - - 0.000000000000000000000000000000000000000000000000000002464 194.0
BYD3_k127_1652607_3 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000000005296 190.0
BYD3_k127_1652607_4 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00007901 46.0
BYD3_k127_1660678_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 5.255e-242 754.0
BYD3_k127_1660678_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006728 546.0
BYD3_k127_1660678_2 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 507.0
BYD3_k127_1660678_3 Cell wall formation K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 481.0
BYD3_k127_1663554_0 Yip1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 416.0
BYD3_k127_1663554_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 349.0
BYD3_k127_1663554_2 PFAM Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001909 285.0
BYD3_k127_1663554_3 PFAM Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001306 265.0
BYD3_k127_1663554_4 Transcriptional regulator, MarR family with acetyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005529 250.0
BYD3_k127_1663554_5 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000004075 252.0
BYD3_k127_1663554_6 - - - - 0.0000000000000000000000000000000000000000000000000001247 187.0
BYD3_k127_1663554_7 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.0000000000000000000000000000000000001199 141.0
BYD3_k127_1663554_8 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0000000000001722 70.0
BYD3_k127_1665319_0 succinylglutamate desuccinylase K06987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 441.0
BYD3_k127_1665319_1 Ligated ion channel L-glutamate- and glycine-binding site K02030,K10013,K10014,K10022 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 338.0
BYD3_k127_1665319_2 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008325 304.0
BYD3_k127_1665319_3 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029,K10016,K10024 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006376 301.0
BYD3_k127_1682083_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 1.405e-229 713.0
BYD3_k127_1682083_1 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 488.0
BYD3_k127_1682083_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007274 371.0
BYD3_k127_1682083_3 - - - - 0.000000000000000000000000000000000000000000000000000004492 201.0
BYD3_k127_1682083_4 - - - - 0.00000000000000000000000000000000000001236 150.0
BYD3_k127_1690454_0 Domain of Unknown Function (DUF349) - - - 1.255e-315 990.0
BYD3_k127_1690454_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006118 570.0
BYD3_k127_1690454_2 Belongs to the MtfA family K09933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008458 310.0
BYD3_k127_1690454_3 PFAM Lytic transglycosylase catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 301.0
BYD3_k127_1690454_4 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.000000000000000000000000000000000000000006727 157.0
BYD3_k127_1694661_0 protein related to plant photosystem II stability assembly factor - - - 9.144e-201 629.0
BYD3_k127_1694661_1 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K00090 - 1.1.1.215,1.1.1.26,1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 513.0
BYD3_k127_1694661_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 422.0
BYD3_k127_1694661_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006644 276.0
BYD3_k127_1694661_4 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000001812 226.0
BYD3_k127_1694661_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000005519 220.0
BYD3_k127_1694661_6 ThiS family - - - 0.00000000000000000000000000000000001911 136.0
BYD3_k127_1694661_7 Domain of unknown function (DUF4148) - - - 0.0000000000000000000000000002391 122.0
BYD3_k127_1694661_8 KN motif and ankyrin repeat - GO:0001726,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005874,GO:0005886,GO:0005911,GO:0005912,GO:0005924,GO:0005927,GO:0006996,GO:0007010,GO:0007162,GO:0007275,GO:0007399,GO:0008013,GO:0008017,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010769,GO:0010771,GO:0010810,GO:0010812,GO:0010975,GO:0010977,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0023057,GO:0030029,GO:0030036,GO:0030054,GO:0030055,GO:0030056,GO:0030111,GO:0030154,GO:0030155,GO:0030177,GO:0030334,GO:0030336,GO:0030832,GO:0030833,GO:0030837,GO:0031252,GO:0031253,GO:0031256,GO:0031333,GO:0031344,GO:0031345,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032535,GO:0032587,GO:0032878,GO:0032879,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0034330,GO:0034331,GO:0035023,GO:0035024,GO:0035371,GO:0040012,GO:0040013,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043954,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045216,GO:0045217,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046578,GO:0046580,GO:0046626,GO:0046627,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051010,GO:0051056,GO:0051058,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051271,GO:0051493,GO:0051494,GO:0051960,GO:0051961,GO:0060284,GO:0060491,GO:0060828,GO:0061041,GO:0065007,GO:0065008,GO:0070161,GO:0071840,GO:0071944,GO:0080134,GO:0090066,GO:0090263,GO:0090303,GO:0098590,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120032,GO:0120033,GO:0120035,GO:0120038,GO:1900024,GO:1900025,GO:1900027,GO:1900028,GO:1900076,GO:1900077,GO:1902531,GO:1902532,GO:1902743,GO:1902744,GO:1902903,GO:1902904,GO:1903034,GO:1903036,GO:1990752,GO:2000026,GO:2000114,GO:2000145,GO:2000146,GO:2000392,GO:2000393 - 0.00007884 55.0
BYD3_k127_1700863_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 3.94e-255 791.0
BYD3_k127_1700863_1 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 368.0
BYD3_k127_1713702_0 PFAM PHB de-polymerase domain protein K05973 - 3.1.1.75 8.436e-235 732.0
BYD3_k127_1713702_1 PFAM aminotransferase, class I and II K00832 - 2.6.1.57 2.234e-229 714.0
BYD3_k127_1713702_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003605 353.0
BYD3_k127_1720002_0 fumarate reductase succinate dehydrogenase flavoprotein domain protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 346.0
BYD3_k127_1720002_1 fumarate reductase succinate dehydrogenase flavoprotein domain protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 332.0
BYD3_k127_1720002_2 PFAM regulatory protein, ArsR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005507 292.0
BYD3_k127_1720002_3 COG0840 Methyl-accepting chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000372 290.0
BYD3_k127_1720002_4 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.000000000000000000001602 95.0
BYD3_k127_1726603_0 FAD binding domain K05712 - 1.14.13.127 1.386e-207 653.0
BYD3_k127_1726603_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 357.0
BYD3_k127_1726603_2 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000001677 213.0
BYD3_k127_1735367_0 TonB-dependent receptor plug K16090 - - 8.432e-314 979.0
BYD3_k127_1735367_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000619 375.0
BYD3_k127_1735367_2 PKHD-type hydroxylase K07336 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 353.0
BYD3_k127_1735367_3 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03387 - - 0.00000000000000000000952 99.0
BYD3_k127_1735367_4 PFAM FMN-dependent alpha-hydroxy acid dehydrogenase K00101,K16422 - 1.1.2.3,1.1.3.46 0.0000000001517 72.0
BYD3_k127_1735367_5 Protein of unknown function DUF58 - - - 0.0000562 55.0
BYD3_k127_1754421_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 6.321e-194 610.0
BYD3_k127_1754421_1 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 511.0
BYD3_k127_1754421_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 401.0
BYD3_k127_1754421_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 394.0
BYD3_k127_1754421_4 type IV pilus biogenesis stability protein PilW K02656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 310.0
BYD3_k127_1754421_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 299.0
BYD3_k127_1754421_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000006049 259.0
BYD3_k127_1754421_7 Domain of unknown function (DUF4115) K15539 - - 0.000000000000000000000000000005914 130.0
BYD3_k127_175602_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 517.0
BYD3_k127_175602_1 Belongs to the flagella basal body rod proteins family K02396 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009166 498.0
BYD3_k127_175602_10 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.0000000000000000000000000000000000000000000000000000000000000001343 239.0
BYD3_k127_175602_11 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000000000000000000000000000000000000000000001007 220.0
BYD3_k127_175602_12 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00000000000000000000000000000000000000000000000000000007858 202.0
BYD3_k127_175602_13 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.000000000000000000000000000000000000000009268 159.0
BYD3_k127_175602_2 Flagellar basal body rod protein K02390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 466.0
BYD3_k127_175602_3 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 419.0
BYD3_k127_175602_4 Belongs to the flagella basal body rod proteins family K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006903 400.0
BYD3_k127_175602_5 TIGRFAM Flagellar hook-associated protein 3 K02397 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 360.0
BYD3_k127_175602_6 Flagellar basal body rod protein K02391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 330.0
BYD3_k127_175602_7 Flagellar rod assembly protein muramidase FlgJ K02395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 319.0
BYD3_k127_175602_8 PFAM Metal-dependent hydrolase HDOD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 297.0
BYD3_k127_175602_9 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000000009972 238.0
BYD3_k127_1767387_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 7.313e-239 744.0
BYD3_k127_1767387_1 helix-turn-helix- domain containing protein, AraC type K13529 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000002385 285.0
BYD3_k127_179266_0 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 597.0
BYD3_k127_179266_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004902 285.0
BYD3_k127_179266_2 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000000000000000000001564 191.0
BYD3_k127_179266_3 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000005731 150.0
BYD3_k127_1796800_0 PFAM Substrate-binding region of ABC-type glycine betaine transport system K02002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007438 442.0
BYD3_k127_1796800_1 Pfam Sulfatase K01133 - 3.1.6.6 0.00000000000000000000000000000000000000000000000000000000000000000000000009582 252.0
BYD3_k127_1796800_2 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000001905 175.0
BYD3_k127_1798925_0 TIGRFAM TonB family protein K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006095 368.0
BYD3_k127_1798925_1 PFAM Ribonuclease II K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 343.0
BYD3_k127_1798925_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000003301 98.0
BYD3_k127_1800094_0 amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 505.0
BYD3_k127_1800094_1 PFAM AMP-dependent synthetase and ligase K20034 - 6.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 380.0
BYD3_k127_180875_0 PQQ-like domain K00114 - 1.1.2.8 1.162e-249 776.0
BYD3_k127_180875_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 441.0
BYD3_k127_1811222_0 Iron-containing redox enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 381.0
BYD3_k127_1811222_1 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 294.0
BYD3_k127_1811222_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001278 250.0
BYD3_k127_1811222_3 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000001618 141.0
BYD3_k127_181127_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 480.0
BYD3_k127_181127_1 PFAM Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 435.0
BYD3_k127_181127_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 344.0
BYD3_k127_181127_3 Thioesterase superfamily K07107 - - 0.000000000000000000000000000000000000000000000000000000006465 204.0
BYD3_k127_1825161_0 Belongs to the transketolase family K00615 - 2.2.1.1 1.241e-311 961.0
BYD3_k127_1825161_1 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009509 376.0
BYD3_k127_1825161_2 Nucleotidyl transferase K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004234 347.0
BYD3_k127_1828453_0 DNA topoisomerase, type IA, central domain protein K03169 - 5.99.1.2 6.963e-276 855.0
BYD3_k127_1828453_1 PFAM nuclear protein SET K07117 - - 0.000000000000000000000000000000000000001418 151.0
BYD3_k127_1842993_0 helix_turn _helix lactose operon repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 391.0
BYD3_k127_1842993_1 Porin-like glycoporin RafY - - - 0.000000000000000000000000000000000000000000000000000000000000000000002575 245.0
BYD3_k127_1842993_2 SMART AAA ATPase K02003 - - 0.00003453 46.0
BYD3_k127_1845985_0 DNA (cytosine-5-)-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000003957 207.0
BYD3_k127_1845985_1 DNA primase - - - 0.000000000000000000000000000000000262 153.0
BYD3_k127_1845985_2 COG0553 Superfamily II DNA RNA helicases, SNF2 family - - - 0.00000000000000000000000000000000029 138.0
BYD3_k127_1845985_5 DNA RNA helicase, superfamily II K06919 - - 0.0000000000000002754 94.0
BYD3_k127_1845985_7 - - - - 0.0000003559 58.0
BYD3_k127_1849086_0 Protein of unknown function (DUF1298) - - - 7.783e-213 679.0
BYD3_k127_1849086_1 Putative aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005673 389.0
BYD3_k127_1849086_2 PFAM acyl-coA-binding protein, ACBP - - - 0.000000000000000000000000000000000000003053 151.0
BYD3_k127_1849086_3 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - 0.000000000000000000000000000000000000003699 148.0
BYD3_k127_1867694_0 RNA binding S1 domain protein K06959 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007695 430.0
BYD3_k127_1867694_1 signal transduction protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 320.0
BYD3_k127_1867694_2 Esterase of the alpha-beta hydrolase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007968 280.0
BYD3_k127_1867694_3 signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003608 273.0
BYD3_k127_1867694_4 Tripartite tricarboxylate transporter family receptor K07795 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006468 273.0
BYD3_k127_1867694_5 Tripartite tricarboxylate transporter family receptor K07795 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007688 269.0
BYD3_k127_1893077_0 ATPases associated with a variety of cellular activities K10441,K10562 - 3.6.3.17 3.292e-260 810.0
BYD3_k127_1893077_1 Branched-chain amino acid transport system / permease component K10561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 508.0
BYD3_k127_1893077_2 Branched-chain amino acid transport system / permease component K10560 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 515.0
BYD3_k127_1893077_3 Involved in the anomeric conversion of L-rhamnose K03534 - 5.1.3.32 0.000000000000000000000000000000000000721 141.0
BYD3_k127_1893077_4 Periplasmic binding proteins and sugar binding domain of LacI family K10559 - - 0.000000002524 57.0
BYD3_k127_191975_0 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000635 381.0
BYD3_k127_191975_1 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000014 237.0
BYD3_k127_1951643_0 glutamine synthetase K01915 - 6.3.1.2 4.34e-205 662.0
BYD3_k127_1951643_1 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 1.871e-202 632.0
BYD3_k127_1951643_2 PFAM FAD dependent oxidoreductase K07137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 500.0
BYD3_k127_1951643_3 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 462.0
BYD3_k127_1951643_4 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 403.0
BYD3_k127_1951643_5 PFAM regulatory protein, LysR K21645 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 351.0
BYD3_k127_1951643_6 Protein of unknown function (DUF3025) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 339.0
BYD3_k127_1951643_7 17 kDa surface antigen - - - 0.00000000000000000000000000000000000000003124 172.0
BYD3_k127_195229_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1395.0
BYD3_k127_195229_1 SMART phosphoesterase PHP domain protein K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 456.0
BYD3_k127_195229_2 PFAM aminoacyl-tRNA synthetase class Ib K01867 GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009681 437.0
BYD3_k127_195229_3 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 367.0
BYD3_k127_195229_4 Permeases of the drug metabolite transporter K15270 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 378.0
BYD3_k127_195229_5 Belongs to the SUA5 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 347.0
BYD3_k127_195229_6 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007778 328.0
BYD3_k127_1953080_0 cheY-homologous receiver domain K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 558.0
BYD3_k127_1953080_1 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000549 420.0
BYD3_k127_1953080_10 Nickel/cobalt transporter regulator - - - 0.00000000000000000000000001714 121.0
BYD3_k127_1953080_11 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.0000000002181 63.0
BYD3_k127_1953080_2 Thioesterase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006864 293.0
BYD3_k127_1953080_3 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000212 283.0
BYD3_k127_1953080_4 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000002221 269.0
BYD3_k127_1953080_5 Thioredoxin-like domain K03805 - - 0.0000000000000000000000000000000000000000000000000000000000000000005998 233.0
BYD3_k127_1953080_6 Tellurite resistance protein TerB - - - 0.000000000000000000000000000000000000000000000000001072 191.0
BYD3_k127_1953080_7 Domain of unknown function (DUF427) - - - 0.000000000000000000000000000000000000000000000000115 182.0
BYD3_k127_1953080_8 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000008289 181.0
BYD3_k127_1953080_9 PFAM OmpA MotB domain protein - - - 0.000000000000000000000000000000004994 139.0
BYD3_k127_1957939_0 Secretin and TonB N terminus short domain K02453 - - 1.151e-206 661.0
BYD3_k127_1957939_1 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000000000000000000000000000006528 200.0
BYD3_k127_1957939_2 Type II secretory pathway, pseudopilin - - - 0.00000000000000000000000000000000000000001254 160.0
BYD3_k127_1957939_3 Type II secretion system protein G K02456 - - 0.000000000000000000000000000000000000004002 152.0
BYD3_k127_1961987_0 Patatin-like phospholipase K07001 - - 6.459e-222 711.0
BYD3_k127_1961987_1 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 420.0
BYD3_k127_1961987_2 PFAM regulatory protein LacI K02529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 417.0
BYD3_k127_1961987_3 Belongs to the xylose isomerase family K01805 - 5.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 373.0
BYD3_k127_1961987_4 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000001795 218.0
BYD3_k127_1973905_0 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004524 507.0
BYD3_k127_1973905_1 Short-chain dehydrogenase reductase SDR K00059,K03793 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.100,1.5.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 359.0
BYD3_k127_1973905_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000002503 230.0
BYD3_k127_1973905_3 Protein of unknown function (DUF2905) - - - 0.00000000000000000000000000356 113.0
BYD3_k127_1973905_4 PFAM Thioredoxin domain K03672 - 1.8.1.8 0.00002443 47.0
BYD3_k127_1976558_0 alcohol dehydrogenase K00043,K13954 - 1.1.1.1,1.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005012 534.0
BYD3_k127_1976558_1 PFAM Alpha beta hydrolase fold-3 domain protein K01066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 447.0
BYD3_k127_1976558_2 Thioesterase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 401.0
BYD3_k127_1976558_3 Transport and Golgi organisation 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007094 259.0
BYD3_k127_1976558_4 Belongs to the GcvT family K06980 - - 0.0000000002353 61.0
BYD3_k127_1977850_0 Belongs to the binding-protein-dependent transport system permease family K10553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 529.0
BYD3_k127_1977850_1 PFAM ABC transporter related K10554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 461.0
BYD3_k127_1977850_2 Belongs to the RbsD FucU family K02431 - 5.1.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000001022 258.0
BYD3_k127_1977850_3 PFAM ROK family protein - - - 0.0000000000000000007883 94.0
BYD3_k127_1979360_0 pfkB family carbohydrate kinase K03338 - 2.7.1.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003472 340.0
BYD3_k127_1979360_1 Thiamine pyrophosphate enzyme, central domain K03336 - 3.7.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 333.0
BYD3_k127_1990903_0 Protein of unknown function - - - 0.0 1304.0
BYD3_k127_1990903_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.89e-321 999.0
BYD3_k127_1990903_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 377.0
BYD3_k127_2005700_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 1.086e-247 772.0
BYD3_k127_2005700_1 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 2.283e-221 696.0
BYD3_k127_2005700_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 590.0
BYD3_k127_2005700_3 PFAM HhH-GPD family protein K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 353.0
BYD3_k127_2005700_4 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 329.0
BYD3_k127_2005700_5 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000001296 183.0
BYD3_k127_2016962_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.507e-225 709.0
BYD3_k127_2016962_1 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007807 482.0
BYD3_k127_2016962_2 - - - - 0.00000000000002418 80.0
BYD3_k127_2028701_0 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0 1054.0
BYD3_k127_2028701_1 Extracellular ligand-binding receptor K01999 - - 8.827e-206 646.0
BYD3_k127_2028701_2 AAA domain, putative AbiEii toxin, Type IV TA system K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 292.0
BYD3_k127_2028701_3 PFAM Glutathione S-transferase domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 301.0
BYD3_k127_2028701_4 transcriptional Regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000005886 202.0
BYD3_k127_2028701_5 Protein of Unknown function (DUF2784) - - - 0.0000000000000000000000000000000000000000000000000000008359 196.0
BYD3_k127_2028838_0 D-arabinono-1,4-lactone oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 579.0
BYD3_k127_2028838_1 Alanine racemase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 516.0
BYD3_k127_2035827_0 chemotaxis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009173 630.0
BYD3_k127_2035827_1 Carbamoyl-phosphate synthase L chain, ATP-binding K01965 - 6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 345.0
BYD3_k127_2035827_2 Part of a membrane complex involved in electron transport K03616 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 311.0
BYD3_k127_2035827_3 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 293.0
BYD3_k127_2035827_4 Ribosomal RNA adenine dimethylase K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000002879 102.0
BYD3_k127_2035827_5 - - - - 0.00002515 51.0
BYD3_k127_2037472_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 4.89e-220 689.0
BYD3_k127_2037472_1 CHASE4 domain - - - 0.000000008957 65.0
BYD3_k127_2044712_0 PFAM transglutaminase domain protein K22452 - 2.3.2.13 1.799e-276 870.0
BYD3_k127_2044712_1 PFAM ATPase associated with various cellular activities, AAA_3 K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 521.0
BYD3_k127_2044712_2 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 455.0
BYD3_k127_2044712_3 PFAM histone deacetylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003087 252.0
BYD3_k127_2049754_0 Peptidase family S49 K21511 - - 0.0000000000000000000001605 113.0
BYD3_k127_2049754_1 - - - - 0.0000006883 64.0
BYD3_k127_2049754_2 - - - - 0.000001209 61.0
BYD3_k127_2049754_3 Phage terminase large subunit (GpA) - - - 0.00003456 57.0
BYD3_k127_2049754_4 Phage-related minor tail protein - - - 0.0002189 56.0
BYD3_k127_2058070_0 PFAM ResB family protein K07399 - - 3.888e-310 966.0
BYD3_k127_2058070_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.457e-248 769.0
BYD3_k127_2058070_10 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000001419 123.0
BYD3_k127_2058070_2 Cytochrome C assembly protein - - - 3.144e-240 748.0
BYD3_k127_2058070_3 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 501.0
BYD3_k127_2058070_4 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 380.0
BYD3_k127_2058070_5 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006326 359.0
BYD3_k127_2058070_6 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 348.0
BYD3_k127_2058070_7 PFAM Cytochrome c, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 312.0
BYD3_k127_2058070_8 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001443 271.0
BYD3_k127_2058070_9 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000006441 234.0
BYD3_k127_2058611_0 Class II Aldolase and Adducin N-terminal domain - - - 0.0 1075.0
BYD3_k127_2058611_1 LysR substrate binding domain K21703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 440.0
BYD3_k127_2093510_0 ABC-type multidrug transport system ATPase and permease K06147 - - 4.811e-271 852.0
BYD3_k127_2093510_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008921 549.0
BYD3_k127_2093510_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 396.0
BYD3_k127_2097779_0 Major facilitator superfamily - - - 7.021e-210 664.0
BYD3_k127_2097779_1 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 574.0
BYD3_k127_2097779_2 PFAM RNA-binding S4 domain protein K04762 - - 0.0000000000000000000000000431 116.0
BYD3_k127_2097779_3 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000004776 77.0
BYD3_k127_2097779_4 PFAM RNA-binding S4 domain protein K04762 - - 0.000000000000135 72.0
BYD3_k127_210506_0 Belongs to the short-chain dehydrogenases reductases (SDR) family K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 460.0
BYD3_k127_210506_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 372.0
BYD3_k127_210506_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 353.0
BYD3_k127_2145288_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009455 582.0
BYD3_k127_2145288_1 Siderophore-interacting FAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002097 287.0
BYD3_k127_2145288_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000000000001607 177.0
BYD3_k127_2145288_3 PFAM AMP-dependent synthetase and ligase K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000111 169.0
BYD3_k127_2145288_4 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000003791 93.0
BYD3_k127_2154064_0 phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004653 474.0
BYD3_k127_2154064_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 460.0
BYD3_k127_2154064_2 GTP cyclohydrolase I K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006277 436.0
BYD3_k127_2154064_3 Endonuclease exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009673 377.0
BYD3_k127_2154064_4 membrane-associated Zn-dependent proteases 1 K16922 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 311.0
BYD3_k127_2154064_5 PFAM BLUF domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000363 241.0
BYD3_k127_2154064_6 - - - - 0.000000001674 60.0
BYD3_k127_2155553_0 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 451.0
BYD3_k127_2155553_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000973 349.0
BYD3_k127_2155553_2 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001027 274.0
BYD3_k127_2155553_3 Inclusion body protein - - - 0.00000000000000000000000000000000000000000000000000000000000002548 218.0
BYD3_k127_2211932_0 PFAM extracellular solute-binding protein family 1 K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 483.0
BYD3_k127_2211932_1 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009952 473.0
BYD3_k127_2211932_2 PFAM Patatin K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 351.0
BYD3_k127_2211932_3 TIGRFAM phasin family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003769 249.0
BYD3_k127_2211932_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000007021 64.0
BYD3_k127_2221547_0 Member of a two-component regulatory system K07644 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003688 483.0
BYD3_k127_2221547_1 PFAM response regulator receiver K07665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 384.0
BYD3_k127_2221547_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006356 328.0
BYD3_k127_2221547_3 PFAM multicopper oxidase type K22348 - 1.16.3.3 0.0000000000003174 70.0
BYD3_k127_2221547_4 Cyclic nucleotide-monophosphate binding domain K10914 - - 0.000003462 50.0
BYD3_k127_2224669_0 Belongs to the arginase family K12255 - 3.5.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 561.0
BYD3_k127_2224669_1 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 326.0
BYD3_k127_2224669_2 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000006453 129.0
BYD3_k127_2224669_3 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000000000007232 125.0
BYD3_k127_222872_0 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 - - 2.081e-301 942.0
BYD3_k127_222872_1 extracellular solute-binding protein, family 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 330.0
BYD3_k127_222872_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000001679 239.0
BYD3_k127_222872_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000006439 111.0
BYD3_k127_2257301_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 0.000000000000000000000000000000000000000000000000000000000000000000000000248 247.0
BYD3_k127_2257301_1 Thioesterase superfamily - - - 0.00000000000000000000000000000002905 130.0
BYD3_k127_2257301_2 Conserved TM helix - - - 0.00000001392 55.0
BYD3_k127_2281827_0 Belongs to the transketolase family K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 567.0
BYD3_k127_2281827_1 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 322.0
BYD3_k127_2281827_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000008888 122.0
BYD3_k127_2285236_0 solute-binding protein K10014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 460.0
BYD3_k127_2285236_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 435.0
BYD3_k127_2285236_2 esterase of the alpha beta K07002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 284.0
BYD3_k127_2285236_3 helix_turn_helix ASNC type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002137 261.0
BYD3_k127_2285236_4 TIGRFAM sulfate ABC transporter, periplasmic sulfate-binding protein K02048 - - 0.000000000000000002489 86.0
BYD3_k127_2290755_0 FtsX-like permease family K02004 - - 3.66e-305 958.0
BYD3_k127_2290755_1 Binding-protein-dependent transport system inner membrane component K02063 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 427.0
BYD3_k127_2290755_2 ABC transporter, substrate-binding protein, thiB family K02064 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 417.0
BYD3_k127_2290755_3 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 385.0
BYD3_k127_2290755_4 Methyltransferase type 12 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 299.0
BYD3_k127_2290755_5 SPW repeat - - - 0.000000000000000000000000000000000000000000007603 172.0
BYD3_k127_2290755_6 - - - - 0.00000000000000000000004688 100.0
BYD3_k127_2298009_0 ammonium transporter K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 516.0
BYD3_k127_2298009_1 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000004125 230.0
BYD3_k127_2298641_0 TonB-dependent receptor plug K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000292 627.0
BYD3_k127_2298641_1 Cobyrinic acid ac-diamide synthase K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 412.0
BYD3_k127_2298641_2 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 405.0
BYD3_k127_2298641_3 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001774 279.0
BYD3_k127_2298641_4 SWI complex, BAF60b domains - - - 0.00000000000000000000000000000000000000000000000001008 185.0
BYD3_k127_2298641_5 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000000218 132.0
BYD3_k127_2298641_6 - - - - 0.0000000000000000006906 89.0
BYD3_k127_2298641_7 Adenylate cyclase - - - 0.00000004005 59.0
BYD3_k127_2303138_0 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 8.44e-245 761.0
BYD3_k127_2303138_1 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 3.349e-229 728.0
BYD3_k127_2303138_10 - - - - 0.000000004788 59.0
BYD3_k127_2303138_2 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 562.0
BYD3_k127_2303138_3 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 466.0
BYD3_k127_2303138_4 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007969 430.0
BYD3_k127_2303138_5 PFAM oxidoreductase domain protein K00010,K18067 - 1.1.1.18,1.1.1.369,1.3.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 379.0
BYD3_k127_2303138_6 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007952 330.0
BYD3_k127_2303138_7 peptidase K06194 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 322.0
BYD3_k127_2303138_8 PFAM isocitrate isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009398 296.0
BYD3_k127_2303138_9 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000000000000004649 151.0
BYD3_k127_2334097_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 567.0
BYD3_k127_2334097_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 454.0
BYD3_k127_2334097_2 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.000000000000000000000000000000000000000001473 156.0
BYD3_k127_2348885_0 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006848 596.0
BYD3_k127_2348885_1 PFAM Substrate-binding region of ABC-type glycine betaine transport system K02002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 460.0
BYD3_k127_2348885_2 glycine betaine K02002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002836 441.0
BYD3_k127_2348885_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 323.0
BYD3_k127_2348885_4 PFAM 4-vinyl reductase, 4VR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 319.0
BYD3_k127_2348885_5 NADH flavin oxidoreductase NADH oxidase K00219,K00317,K21833 - 1.3.1.34,1.5.8.1,1.5.8.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000759 276.0
BYD3_k127_2348885_6 belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000004536 252.0
BYD3_k127_2354826_0 Heat shock 70 kDa protein K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 288.0
BYD3_k127_2354826_1 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002777 279.0
BYD3_k127_2354826_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000000000000007606 218.0
BYD3_k127_2354826_3 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000000003358 198.0
BYD3_k127_2354826_4 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000324 147.0
BYD3_k127_2359537_0 PFAM Isocitrate dehydrogenase NADP-dependent monomeric type K00031 - 1.1.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 545.0
BYD3_k127_2359537_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 496.0
BYD3_k127_2359537_10 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000001212 68.0
BYD3_k127_2359537_11 - - - - 0.00005061 52.0
BYD3_k127_2359537_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 398.0
BYD3_k127_2359537_3 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004755 383.0
BYD3_k127_2359537_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006602 369.0
BYD3_k127_2359537_5 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 372.0
BYD3_k127_2359537_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007755 325.0
BYD3_k127_2359537_7 Mota tolq exbb proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 316.0
BYD3_k127_2359537_8 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.000000000000000000000000000000000000000000000003285 184.0
BYD3_k127_2359537_9 Belongs to the UPF0434 family K09791 - - 0.0000000000000000000000000818 108.0
BYD3_k127_2365500_0 nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 413.0
BYD3_k127_2365500_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000001032 244.0
BYD3_k127_2365500_2 PFAM thioesterase superfamily protein K07107 - - 0.0000000000000000000000000000000000000000000000000000000000000000002426 236.0
BYD3_k127_2365500_3 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000002375 202.0
BYD3_k127_2365500_4 Histone deacetylase domain - - - 0.0000000000000000001528 90.0
BYD3_k127_237640_0 amine dehydrogenase activity - - - 0.0 1476.0
BYD3_k127_237640_1 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009159 497.0
BYD3_k127_237640_2 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.0000000000000000000000000004718 113.0
BYD3_k127_2393505_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.216e-233 727.0
BYD3_k127_2393505_1 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 545.0
BYD3_k127_2393505_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000446 231.0
BYD3_k127_2401644_0 SMART AAA ATPase K02450 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 526.0
BYD3_k127_2401644_1 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000000000000000000000000000003418 197.0
BYD3_k127_2401644_2 transport system, ATPase component K01990 - - 0.0000000000000000000000000001421 121.0
BYD3_k127_2401644_3 Type II secretion system protein B K02451 - - 0.000000000000000000000000005063 119.0
BYD3_k127_2436951_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 516.0
BYD3_k127_2436951_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008084 511.0
BYD3_k127_2436951_2 PFAM helix-turn-helix protein RpiR K19337 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 506.0
BYD3_k127_2461539_0 Belongs to the heme-copper respiratory oxidase family K04561 - 1.7.2.5 6.507e-262 821.0
BYD3_k127_2461539_1 CbbQ NirQ NorQ K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004964 403.0
BYD3_k127_2461539_2 helix_turn_helix, cAMP Regulatory protein K21563 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007604 313.0
BYD3_k127_2461539_3 Cytochrome c K02305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005323 257.0
BYD3_k127_2461539_4 Belongs to the UbiD family K03182 - 4.1.1.98 0.00000000000000000000000000000000000001853 144.0
BYD3_k127_2461539_5 4Fe-4S binding domain - - - 0.00000000000002379 76.0
BYD3_k127_2469550_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002673 518.0
BYD3_k127_2469550_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 482.0
BYD3_k127_2469550_10 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000000000000000021 203.0
BYD3_k127_2469550_11 PFAM cytochrome c - - - 0.0000000000000000000000000000000000000000000000000002033 192.0
BYD3_k127_2469550_12 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000000000000000000002868 184.0
BYD3_k127_2469550_13 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000000000002743 167.0
BYD3_k127_2469550_14 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000000000000000000001219 162.0
BYD3_k127_2469550_15 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000003501 145.0
BYD3_k127_2469550_16 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000000000001025 102.0
BYD3_k127_2469550_17 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.000000000001102 68.0
BYD3_k127_2469550_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 376.0
BYD3_k127_2469550_3 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 369.0
BYD3_k127_2469550_4 Redoxin domain protein K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 304.0
BYD3_k127_2469550_5 Cytochrome B561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001232 278.0
BYD3_k127_2469550_6 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009853 267.0
BYD3_k127_2469550_7 Redoxin domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000161 235.0
BYD3_k127_2469550_8 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000002743 216.0
BYD3_k127_2469550_9 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000000000000000000002033 206.0
BYD3_k127_2470497_0 PFAM Acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000715 514.0
BYD3_k127_2470497_1 PFAM HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 349.0
BYD3_k127_2470497_2 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000001354 149.0
BYD3_k127_2475382_0 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid K00130 - 1.2.1.8 1.335e-204 645.0
BYD3_k127_2475382_1 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate K00108 GO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0006113,GO:0006575,GO:0006577,GO:0006578,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008812,GO:0009058,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0019285,GO:0019695,GO:0031455,GO:0031456,GO:0034641,GO:0042133,GO:0042398,GO:0044237,GO:0044249,GO:0044271,GO:0050896,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 1.1.99.1 0.000000000000000000000000000000000000008704 147.0
BYD3_k127_2483167_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 5.809e-295 921.0
BYD3_k127_2483167_1 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 412.0
BYD3_k127_2483167_2 Cytochrome c K17223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 304.0
BYD3_k127_2487169_0 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000798 584.0
BYD3_k127_2487169_1 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004823 362.0
BYD3_k127_2489552_0 Protein of unknown function (DUF3570) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005439 348.0
BYD3_k127_2489552_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 297.0
BYD3_k127_2489552_2 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000001294 215.0
BYD3_k127_2489552_3 sister chromatid segregation - - - 0.0000000000000000000000006995 107.0
BYD3_k127_2489552_4 Domain of unknown function (DUF4266) - - - 0.0000000000000004405 79.0
BYD3_k127_2499395_0 Transcriptional regulator, LysR family K21703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 486.0
BYD3_k127_2499395_1 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 402.0
BYD3_k127_2499395_2 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 370.0
BYD3_k127_2499395_3 carbohydrate phosphatase activity K01086 - 3.1.3.11,3.1.3.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 311.0
BYD3_k127_2508536_0 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 443.0
BYD3_k127_2508536_1 PFAM ABC transporter related K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 385.0
BYD3_k127_2508536_2 PFAM Ornithine cyclodeaminase mu-crystallin K01750,K19743 - 1.5.1.1,4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 376.0
BYD3_k127_2508536_3 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000001623 166.0
BYD3_k127_2508536_4 PFAM Sulfatase K01130 - 3.1.6.1 0.000000000004115 67.0
BYD3_k127_2545781_0 Signal transduction response regulator, receiver K03415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005531 474.0
BYD3_k127_2545781_1 - - - - 0.000000000000000000000000000000000000000000000000001225 187.0
BYD3_k127_2545781_2 - - - - 0.00000000000000000000000000000000000000000000000003737 180.0
BYD3_k127_2566522_0 PFAM acyl-CoA dehydrogenase domain protein K20035 - - 7.895e-272 840.0
BYD3_k127_2566522_1 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 521.0
BYD3_k127_2566522_2 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 332.0
BYD3_k127_2579675_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1375.0
BYD3_k127_2579675_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 1.925e-237 738.0
BYD3_k127_2579675_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 365.0
BYD3_k127_2579675_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 334.0
BYD3_k127_2591775_0 PFAM extracellular solute-binding protein family 3 K02030,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007951 386.0
BYD3_k127_2591775_1 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895 356.0
BYD3_k127_2591775_2 PFAM Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain K21645 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 336.0
BYD3_k127_2591775_3 Phospholipase/Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007193 306.0
BYD3_k127_2591775_4 Asp/Glu/Hydantoin racemase K01779 - 5.1.1.13 0.000000000000000000000000000000000000000000000000000000002778 207.0
BYD3_k127_2591775_5 Transcriptional regulator K10914 - - 0.0000000000000000000000000000000000000000005604 167.0
BYD3_k127_2591775_6 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K02029,K10003 - - 0.0000000000000000000000000000000000000777 143.0
BYD3_k127_2591775_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000001243 124.0
BYD3_k127_2591775_8 SMART Transcription regulator LuxR, C-terminal - - - 0.00000002945 57.0
BYD3_k127_261681_0 Alginate lyase - - - 2.985e-243 777.0
BYD3_k127_261681_1 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005131 587.0
BYD3_k127_261681_2 Bacterial periplasmic substrate-binding proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 524.0
BYD3_k127_261681_3 PFAM ABC transporter related K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 427.0
BYD3_k127_261681_4 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001044 282.0
BYD3_k127_261681_5 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000005887 204.0
BYD3_k127_261681_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000001185 126.0
BYD3_k127_2620043_0 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 538.0
BYD3_k127_2620043_1 Fad dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 505.0
BYD3_k127_2620043_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 359.0
BYD3_k127_2620043_3 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.0000000000000000000000000000000000000000000000000000000000000007863 221.0
BYD3_k127_2620043_4 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000001349 154.0
BYD3_k127_2620043_5 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 0.0000000000000000000000000000000008315 132.0
BYD3_k127_2634794_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 365.0
BYD3_k127_2634794_1 PFAM regulatory protein, MerR - - - 0.00000000000000000000000000000000000000000000000000000000003156 209.0
BYD3_k127_2634794_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000000002035 185.0
BYD3_k127_2634794_3 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000003263 138.0
BYD3_k127_2634794_4 dehydrogenase - - - 0.0000000005126 59.0
BYD3_k127_2660070_0 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006175 324.0
BYD3_k127_2660070_1 Molecular chaperone. Has ATPase activity K04079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004077 298.0
BYD3_k127_2660070_2 PFAM Alcohol dehydrogenase zinc-binding domain protein K00001 - 1.1.1.1 0.0000000000000000000000000000000000000000000000004773 179.0
BYD3_k127_2669499_0 Protein of unknown function (DUF1631) - - - 1.729e-242 768.0
BYD3_k127_2669499_1 Peptidoglycan-binding LysM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 504.0
BYD3_k127_2669499_2 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009989 452.0
BYD3_k127_2669499_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000437 449.0
BYD3_k127_2669499_4 PFAM AzlC family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 319.0
BYD3_k127_2669499_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004542 269.0
BYD3_k127_2669499_6 Branched-chain amino acid transport - - - 0.00000000000000000000000000000000000000000000001211 173.0
BYD3_k127_2669499_7 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000002731 168.0
BYD3_k127_2676886_0 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 584.0
BYD3_k127_2676886_1 Mg2 transporter protein cora family protein K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 540.0
BYD3_k127_2676886_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 337.0
BYD3_k127_2677173_0 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008432 527.0
BYD3_k127_2677173_1 PFAM porin Gram-negative type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008981 271.0
BYD3_k127_2677173_2 PFAM Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000005762 75.0
BYD3_k127_2681420_0 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000099 503.0
BYD3_k127_2681420_1 Belongs to the aconitase IPM isomerase family K01682 - 4.2.1.3,4.2.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 498.0
BYD3_k127_2681420_2 Signal peptide protein - - - 0.0000000000000000000000000000000000001042 149.0
BYD3_k127_2684651_0 mannose-6-phosphate isomerase, type K16011 - 2.7.7.13,5.3.1.8 1.419e-229 723.0
BYD3_k127_2684651_1 ABC-2 type transporter K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 389.0
BYD3_k127_2684651_2 PFAM ABC transporter related K09691 - - 0.000000000000000000000000000000000000000000001108 169.0
BYD3_k127_2684651_3 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.000000000000000000000000000000000009442 136.0
BYD3_k127_2710795_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.05e-219 687.0
BYD3_k127_2710795_1 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 473.0
BYD3_k127_2710795_2 AMP-binding enzyme C-terminal domain K18661 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 399.0
BYD3_k127_2720690_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 414.0
BYD3_k127_2720690_1 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 349.0
BYD3_k127_2721383_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1114.0
BYD3_k127_2721383_1 PFAM ATP-binding region, ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 547.0
BYD3_k127_2721383_2 transcriptional regulator, Rrf2 family K13643 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 318.0
BYD3_k127_2721383_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001038 282.0
BYD3_k127_2721383_4 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000004211 187.0
BYD3_k127_2723411_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 464.0
BYD3_k127_2723411_1 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 464.0
BYD3_k127_2723411_2 TIGRFAM methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000023 286.0
BYD3_k127_2733548_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 563.0
BYD3_k127_2733548_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003325 241.0
BYD3_k127_2733548_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000000000000000000000000000000216 228.0
BYD3_k127_2733548_3 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000008699 154.0
BYD3_k127_2733548_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000000000000000001385 145.0
BYD3_k127_2744942_0 PFAM ATP-binding region, ATPase domain protein domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 429.0
BYD3_k127_2744942_1 Guanine deaminase K01487 - 3.5.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 302.0
BYD3_k127_2769917_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 9.66e-200 624.0
BYD3_k127_2769917_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004175 296.0
BYD3_k127_2769917_2 Transcriptional regulator K18939 - - 0.00000000000000000000000000000000000000000000000000000007883 201.0
BYD3_k127_2769917_3 Belongs to the transketolase family K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000004204 160.0
BYD3_k127_2773001_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004881 508.0
BYD3_k127_2773001_1 PFAM ABC transporter related K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005705 406.0
BYD3_k127_2773001_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004869 258.0
BYD3_k127_2773001_3 Thiol disulfide interchange protein K03673 - - 0.0000000000000000000000000000000000000000000000000000000002844 219.0
BYD3_k127_2773001_4 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.0000000000000000000000000000000000000000000000000000000004072 209.0
BYD3_k127_2773001_5 PFAM Sporulation domain protein - - - 0.0000000000000000000000000000000000000000000000000003109 194.0
BYD3_k127_2798262_0 AMP-binding enzyme - - - 1.766e-194 616.0
BYD3_k127_2798262_1 Bacterial lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 447.0
BYD3_k127_2798262_2 membrane - - - 0.0000000000000000000000000000000000000000000000000000000001567 211.0
BYD3_k127_2798262_3 FabA-like domain - - - 0.0000000000000000000000000000005833 127.0
BYD3_k127_2808788_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 6.664e-272 844.0
BYD3_k127_2808788_1 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004885 440.0
BYD3_k127_2808788_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.00000000000000000000000000000000000001182 146.0
BYD3_k127_2826813_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0 1258.0
BYD3_k127_2826813_1 Histidine kinase K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007356 352.0
BYD3_k127_2826813_2 - - - - 0.0000000000001817 79.0
BYD3_k127_2826813_3 cellulase activity - - - 0.000000008327 66.0
BYD3_k127_2851047_0 Sulfur oxidation protein SoxY K17226 - - 0.00000000000000000000000000000000000000000000000000000001647 201.0
BYD3_k127_2851047_1 Sulphur oxidation protein SoxZ K17227 - - 0.000000000000000000000000000000000001618 140.0
BYD3_k127_2851047_2 cytochrome C K08738 - - 0.000000000000000000000000000001313 123.0
BYD3_k127_2851047_3 cytochrome K08738 - - 0.000000000000000000000000000001591 122.0
BYD3_k127_2888971_0 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 7.934e-219 684.0
BYD3_k127_2888971_1 PFAM major facilitator superfamily MFS_1 K19577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 571.0
BYD3_k127_2888971_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 545.0
BYD3_k127_2888971_3 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 339.0
BYD3_k127_2888971_4 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003325 250.0
BYD3_k127_2888971_5 Lysine exporter protein (Lyse ygga) - - - 0.0000000000000000000000000000000000000000000000000000003319 201.0
BYD3_k127_2888971_6 Protein of unknown function (DUF3579) - - - 0.0000000000000000000000000000000000000000000000001027 180.0
BYD3_k127_2888971_7 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000000000004011 170.0
BYD3_k127_2888971_8 - - - - 0.000000000000000000000000000000000000313 147.0
BYD3_k127_2888971_9 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000004617 107.0
BYD3_k127_2924622_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 508.0
BYD3_k127_2924622_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 488.0
BYD3_k127_2924622_2 PFAM regulatory protein, LysR K07219 - - 0.00000000000000000000000007797 108.0
BYD3_k127_2926841_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 4.784e-199 624.0
BYD3_k127_2926841_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 412.0
BYD3_k127_2926841_2 Import inner membrane translocase, subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 363.0
BYD3_k127_2926841_3 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002419 243.0
BYD3_k127_2926841_4 protein conserved in bacteria K03690 - - 0.00000000000000000000000000000000000000000000000002482 188.0
BYD3_k127_2926841_5 FAD linked oxidase domain protein - - - 0.000000000000000000000008971 100.0
BYD3_k127_2936105_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K16898 - 3.6.4.12 1e-323 1019.0
BYD3_k127_2936523_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.576e-286 884.0
BYD3_k127_2936523_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 469.0
BYD3_k127_2936523_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 397.0
BYD3_k127_2936523_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000000000000000000000000000000000000000000000000000000000000886 227.0
BYD3_k127_2936523_4 TPM domain - - - 0.00000000000000000000000000000000000000000000000000000000003922 209.0
BYD3_k127_2936523_5 Cyclic nucleotide-binding domain - - - 0.000000000000000000000000000000000000001559 153.0
BYD3_k127_2936807_0 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 343.0
BYD3_k127_2936807_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006836 334.0
BYD3_k127_2936807_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004848 329.0
BYD3_k127_2936807_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000008163 218.0
BYD3_k127_2936807_4 PFAM Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000000001391 131.0
BYD3_k127_2936807_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.000000003884 57.0
BYD3_k127_2937991_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007003 475.0
BYD3_k127_2937991_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 401.0
BYD3_k127_2937991_10 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000004633 86.0
BYD3_k127_2937991_2 peptidase S1 and S6, chymotrypsin Hap K04691,K04772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003498 330.0
BYD3_k127_2937991_3 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000412 261.0
BYD3_k127_2937991_4 Histidine triad (Hit) protein K02503 - - 0.000000000000000000000000000000000000000000000000000000000000000000006252 234.0
BYD3_k127_2937991_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000000000000000000000000000000000000000000006369 225.0
BYD3_k127_2937991_6 phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.00000000000000000000000000000000000000000000000000000000001293 208.0
BYD3_k127_2937991_7 membrane - - - 0.00000000000000000000000000000000000000000000000000005535 190.0
BYD3_k127_2937991_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000000000000000006257 123.0
BYD3_k127_2937991_9 - - - - 0.00000000000000000000000000002103 126.0
BYD3_k127_2941048_0 PFAM MucB RseB family protein K03598 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 384.0
BYD3_k127_2941048_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000347 179.0
BYD3_k127_2941048_2 PFAM Anti sigma-E protein RseA family protein K03597 - - 0.0000000000000000000000000006298 123.0
BYD3_k127_2946538_0 luxR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000008753 250.0
BYD3_k127_2954013_0 Belongs to the xylose isomerase family K01805 - 5.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 592.0
BYD3_k127_2954013_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516 432.0
BYD3_k127_2954013_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 358.0
BYD3_k127_2954013_3 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000037 295.0
BYD3_k127_2954013_4 AraC family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000123 186.0
BYD3_k127_2963066_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 1.294e-194 614.0
BYD3_k127_2963066_1 Cytochrome c bacterial - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000534 376.0
BYD3_k127_2963066_10 Membrane bound YbgT-like protein K00424 - 1.10.3.14 0.000000000002866 66.0
BYD3_k127_2963066_2 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 327.0
BYD3_k127_2963066_3 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 309.0
BYD3_k127_2963066_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003489 293.0
BYD3_k127_2963066_5 COG2346 Truncated hemoglobins K06886 - - 0.00000000000000000000000000000000000000000001894 166.0
BYD3_k127_2963066_6 - - - - 0.00000000000000000000000005312 119.0
BYD3_k127_2963066_7 Cyd operon protein YbgE (Cyd_oper_YbgE) - - - 0.0000000000000000000000007581 109.0
BYD3_k127_2963066_8 PFAM DsrE DsrF-like family - - - 0.0000000000000000000002504 96.0
BYD3_k127_2963066_9 Domain of unknown function DUF302 - - - 0.000000000000000000009749 98.0
BYD3_k127_2977172_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1174.0
BYD3_k127_2977172_1 peptidase dimerisation domain protein - - - 2.486e-226 705.0
BYD3_k127_2977172_2 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 551.0
BYD3_k127_2977172_3 Receptor family ligand binding region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 456.0
BYD3_k127_2977172_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 351.0
BYD3_k127_2981373_0 Transporter associated domain K11105 - - 1.051e-223 703.0
BYD3_k127_2981373_1 MAPEG family - - - 0.0000000000000000000000000000000000000000000000003268 180.0
BYD3_k127_2981373_2 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00002502 56.0
BYD3_k127_2988728_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 2.573e-279 861.0
BYD3_k127_2988728_1 peptidase S1 and S6, chymotrypsin Hap K04691,K04772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 520.0
BYD3_k127_2988728_10 Protein of unknown function (DUF721) - - - 0.0000000000000001879 85.0
BYD3_k127_2988728_11 Protein of unknown function (DUF3149) - - - 0.00000003876 55.0
BYD3_k127_2988728_2 Glutathione S-transferase K03599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 405.0
BYD3_k127_2988728_3 cytochrome c1 K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 408.0
BYD3_k127_2988728_4 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 392.0
BYD3_k127_2988728_5 NIF3 (NGG1p interacting factor 3) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 368.0
BYD3_k127_2988728_6 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 332.0
BYD3_k127_2988728_7 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000000000000000000000000000004512 212.0
BYD3_k127_2988728_8 Starvation protein B K03600 - - 0.000000000000000000000000000000000000000000000000000003005 196.0
BYD3_k127_2988728_9 Peptidase M23B K08259 - 3.4.24.75 0.00000000000000000000000000004621 118.0
BYD3_k127_2995878_0 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 454.0
BYD3_k127_2995878_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 305.0
BYD3_k127_2997182_0 membrane-associated Zn-dependent proteases 1 K16922 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 501.0
BYD3_k127_2997182_1 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 487.0
BYD3_k127_2997182_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000002485 237.0
BYD3_k127_3006280_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 3.81e-214 675.0
BYD3_k127_3006280_1 - - - - 0.00001605 55.0
BYD3_k127_3006355_0 PFAM TRAP dicarboxylate transporter- DctP subunit K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 514.0
BYD3_k127_3006355_1 LysR family K03566 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000902 469.0
BYD3_k127_3006355_2 Short-chain dehydrogenase reductase (SDR) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 430.0
BYD3_k127_3006355_3 Transcriptional regulator, AbiEi antitoxin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002121 251.0
BYD3_k127_3013190_0 L-carnitine dehydratase bile acid-inducible protein F - - - 6.21e-197 619.0
BYD3_k127_3013190_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007229 537.0
BYD3_k127_3013190_2 Pyruvate carboxyltransferase K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 295.0
BYD3_k127_3013190_3 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009883 248.0
BYD3_k127_3013190_4 serine-type endopeptidase activity. It is involved in the biological process described with proteolysis K01312,K08668,K09622,K09640 GO:0002225,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002759,GO:0002760,GO:0002784,GO:0002786,GO:0002803,GO:0002831,GO:0002833,GO:0002920,GO:0002922,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0008544,GO:0009888,GO:0009987,GO:0012505,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022411,GO:0022617,GO:0030141,GO:0030198,GO:0031347,GO:0031349,GO:0031410,GO:0031982,GO:0032101,GO:0032103,GO:0032502,GO:0042599,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043900,GO:0043902,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0080134,GO:0097209,GO:0097708,GO:0099503,GO:0140096,GO:1900424,GO:1900426,GO:1901564 3.4.21.117,3.4.21.4 0.0000000004253 72.0
BYD3_k127_3023596_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 1.185e-203 638.0
BYD3_k127_3023596_1 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 387.0
BYD3_k127_3023596_2 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000000000000000007608 166.0
BYD3_k127_3023596_3 PFAM NLP P60 protein - - - 0.0000000000000000000000000000000000000000001063 160.0
BYD3_k127_3023596_4 - - - - 0.0000000000000000000000000003201 124.0
BYD3_k127_3023596_5 PFAM ABC-1 domain protein K03688 - - 0.0001315 44.0
BYD3_k127_3035951_0 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 3.103e-205 643.0
BYD3_k127_3035951_1 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 428.0
BYD3_k127_3035951_2 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 301.0
BYD3_k127_3036137_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 3.512e-252 783.0
BYD3_k127_3036137_1 ABC transporter substrate-binding protein K17321 - - 1.966e-211 658.0
BYD3_k127_3036137_10 binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000000000001691 215.0
BYD3_k127_3036137_11 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000000000000000003511 201.0
BYD3_k127_3036137_12 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000000000000000000000006196 187.0
BYD3_k127_3036137_13 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000000000000000000009144 173.0
BYD3_k127_3036137_14 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000000000001315 150.0
BYD3_k127_3036137_15 Ribosomal protein L30 K02907 - - 0.0000000000000000000000000004418 113.0
BYD3_k127_3036137_16 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000008361 74.0
BYD3_k127_3036137_2 FAD dependent oxidoreductase K00111 - 1.1.5.3 7.098e-206 653.0
BYD3_k127_3036137_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 332.0
BYD3_k127_3036137_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739 293.0
BYD3_k127_3036137_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 293.0
BYD3_k127_3036137_6 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005976 255.0
BYD3_k127_3036137_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000000000000000000001216 237.0
BYD3_k127_3036137_8 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000000000000002522 233.0
BYD3_k127_3036137_9 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000000000000000000000000000004512 235.0
BYD3_k127_3038972_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 0.0 1102.0
BYD3_k127_3038972_1 isochorismatase hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008711 319.0
BYD3_k127_3038972_2 PFAM NLP P60 protein K13695,K19303 - - 0.000000000000000000000000000000000000000000000000000000000000000000001146 244.0
BYD3_k127_3038972_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000002692 169.0
BYD3_k127_3042699_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 432.0
BYD3_k127_3042699_1 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 436.0
BYD3_k127_3042699_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004669 401.0
BYD3_k127_3042699_3 Histidine kinase internal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 396.0
BYD3_k127_3042699_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 397.0
BYD3_k127_3042699_5 2TM domain - - - 0.000000000000000000000000000000000001129 143.0
BYD3_k127_3042699_6 Protein of unknown function (DUF1439) - - - 0.0000000000000000000002446 110.0
BYD3_k127_3042699_7 2TM domain - - - 0.00000000008799 74.0
BYD3_k127_30460_0 siderophore receptor K02014 - - 9.009e-218 698.0
BYD3_k127_30460_1 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000000000000000000000000000000000000000000004074 164.0
BYD3_k127_30460_2 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000000000000000000000000000000000000000008496 154.0
BYD3_k127_3055610_0 Belongs to the arginase family K01476,K01480,K12255,K18459 - 3.5.3.1,3.5.3.11,3.5.3.17,3.5.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007821 515.0
BYD3_k127_3055610_1 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 421.0
BYD3_k127_3055610_2 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 403.0
BYD3_k127_3055610_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004011 243.0
BYD3_k127_3055610_4 LysE type translocator - - - 0.0000000000000000000000000000000000000000000000001385 184.0
BYD3_k127_3055610_5 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000002838 146.0
BYD3_k127_3055922_0 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003991 428.0
BYD3_k127_3055922_1 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000436 257.0
BYD3_k127_3055922_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.0000000000000000000000000000000000000000000000000002699 192.0
BYD3_k127_3060468_0 Dihydrodipicolinate synthetase family K21062 - 3.5.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003972 482.0
BYD3_k127_3060468_1 Belongs to the proline racemase family K12658 GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855,GO:0036361,GO:0047580,GO:0047661 5.1.1.8 0.000000000000000000000000000000000000000000000000004513 186.0
BYD3_k127_3060468_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000005059 161.0
BYD3_k127_3066901_0 Tail sheath protein K06907 - - 6.828e-261 812.0
BYD3_k127_3066901_1 T4-like virus tail tube protein gp19 - - - 0.0000000000000000000000000000000000000000000000000000004393 198.0
BYD3_k127_3066901_2 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.0000000002189 62.0
BYD3_k127_3076346_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K17050 - 1.7.5.1 0.0 2275.0
BYD3_k127_3076346_1 Nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 383.0
BYD3_k127_3090607_0 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis K03196 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 552.0
BYD3_k127_3090607_1 Type IV secretory pathway, VirB9 K03204 - - 0.0000000000000000000000000000000000000000000000000000000000000000000584 239.0
BYD3_k127_3090607_2 Bacterial conjugation TrbI-like protein K03195 - - 0.00000000000000000000000000000000000000000000000000000001423 215.0
BYD3_k127_3101577_0 PFAM PhoH family protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 537.0
BYD3_k127_3101577_1 pteridine-dependent deoxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000548 317.0
BYD3_k127_3101577_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008994 309.0
BYD3_k127_3101577_3 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005697 241.0
BYD3_k127_3101577_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000001157 181.0
BYD3_k127_311740_0 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 434.0
BYD3_k127_311740_1 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 428.0
BYD3_k127_311740_2 fad dependent oxidoreductase - - - 0.00000000002273 66.0
BYD3_k127_312141_0 General secretion pathway protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 544.0
BYD3_k127_312141_1 TIGRFAM general secretory pathway protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 296.0
BYD3_k127_312141_2 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000005403 75.0
BYD3_k127_3128992_0 peptidase U62, modulator of DNA gyrase K03568 - - 4.144e-269 834.0
BYD3_k127_3128992_1 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 2.453e-247 770.0
BYD3_k127_3128992_2 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 3.523e-209 657.0
BYD3_k127_3128992_3 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020,K08319 - 1.1.1.31,1.1.1.411 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005438 325.0
BYD3_k127_3128992_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000569 259.0
BYD3_k127_3128992_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000001986 217.0
BYD3_k127_3128992_7 - - - - 0.00000000000000000000000000000000000003308 149.0
BYD3_k127_3128992_8 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000003997 108.0
BYD3_k127_3169150_0 HPP family K07168 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 463.0
BYD3_k127_3169150_1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000006264 116.0
BYD3_k127_3170838_0 abc transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000009758 243.0
BYD3_k127_3170838_1 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000984 239.0
BYD3_k127_3170838_2 filamentation induced by cAMP protein Fic - - - 0.00000000000005198 73.0
BYD3_k127_3170838_3 Branched-chain amino acid transport system / permease component K01998 - - 0.00000001652 56.0
BYD3_k127_3181438_0 PFAM MscS Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005804 595.0
BYD3_k127_3181438_1 DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007027 563.0
BYD3_k127_3181438_2 PFAM Enoyl-CoA hydratase isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000268 231.0
BYD3_k127_3181438_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000005792 149.0
BYD3_k127_3192569_0 Tripartite tricarboxylate transporter TctA family K07793 - - 3.398e-287 886.0
BYD3_k127_3192569_1 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 434.0
BYD3_k127_3192569_2 TIGRFAM hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 415.0
BYD3_k127_3192569_3 PFAM Ankyrin K06867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001295 245.0
BYD3_k127_3192569_4 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000000000000000000000000000005576 208.0
BYD3_k127_3192569_5 PFAM Type IV pilus assembly PilZ K02676 - - 0.0000000000000000000000000000000000000000000000000000006666 196.0
BYD3_k127_3192569_6 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000006868 51.0
BYD3_k127_3202920_0 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 437.0
BYD3_k127_3202920_1 PFAM molybdopterin biosynthesis MoaE K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002992 275.0
BYD3_k127_3202920_2 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000000000000000000000004523 126.0
BYD3_k127_3202920_3 FR47-like protein - - - 0.0000000000000000000004997 100.0
BYD3_k127_3227117_0 SMP-30/Gluconolaconase/LRE-like region K14274 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 495.0
BYD3_k127_3227117_1 Short-chain dehydrogenase reductase sdr K22185 - 1.1.1.175 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 463.0
BYD3_k127_3227117_2 Aldose 1-epimerase K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000002922 170.0
BYD3_k127_3247149_0 Acyclic terpene utilisation family protein AtuA - - - 8.756e-239 745.0
BYD3_k127_3247149_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000434 201.0
BYD3_k127_3247149_2 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000001167 179.0
BYD3_k127_3247149_3 - - - - 0.0000000000000000000000000000000000000000000001308 185.0
BYD3_k127_3250486_0 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 410.0
BYD3_k127_3250486_1 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007684 252.0
BYD3_k127_3250486_2 TIGRFAM death-on-curing family protein K07341 - - 0.000000000000000000000000000000000000004576 147.0
BYD3_k127_3250486_3 Thioesterase superfamily - - - 0.0000000000000000000001335 103.0
BYD3_k127_3256299_0 Bacterial extracellular solute-binding protein K10232 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 588.0
BYD3_k127_3256299_1 Binding-protein-dependent transport system inner membrane component K10233 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 458.0
BYD3_k127_3256299_2 ABC transporter K10111,K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004167 426.0
BYD3_k127_3256299_3 ABC-type sugar transport system, permease component K10234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 412.0
BYD3_k127_3256299_4 helix_turn _helix lactose operon repressor - - - 0.000000000000000000000000000000000000000000001221 168.0
BYD3_k127_3259587_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 601.0
BYD3_k127_3259587_1 Transcriptional regulator K19338 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008563 467.0
BYD3_k127_3259587_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 407.0
BYD3_k127_3259587_3 Domain of unknown function (DUF1932) K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008024 385.0
BYD3_k127_3259587_4 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 315.0
BYD3_k127_3259587_5 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 325.0
BYD3_k127_3259587_6 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000004984 181.0
BYD3_k127_3259587_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000004348 158.0
BYD3_k127_3259587_8 PFAM amidohydrolase 2 K10220,K14333 - 4.1.1.46,4.2.1.83 0.0000000000000000000000007629 106.0
BYD3_k127_3267454_0 Conserved TM helix - - - 2.444e-208 661.0
BYD3_k127_3267454_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 4.726e-202 636.0
BYD3_k127_3267454_2 AAA ATPase, central domain protein - - - 0.0000000000000000000000000000000000000000000000000000004651 197.0
BYD3_k127_3268762_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 6.606e-292 899.0
BYD3_k127_3268762_1 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 456.0
BYD3_k127_3268762_2 PFAM Sporulation domain protein K03749 - - 0.00000000000000000000000000000000000000000000000000000001287 206.0
BYD3_k127_3268762_3 PFAM Colicin V production protein K03558 - - 0.00000000000000000000000000000000000000000000000000003992 192.0
BYD3_k127_3273392_0 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001301 256.0
BYD3_k127_3273392_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000002239 231.0
BYD3_k127_3273392_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000001313 184.0
BYD3_k127_3273392_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000006389 128.0
BYD3_k127_3273392_4 COG0671 Membrane-associated phospholipid phosphatase - - - 0.00000000000000000758 87.0
BYD3_k127_327786_0 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000003088 224.0
BYD3_k127_327786_1 EthD domain - - - 0.000000000000000000000000000000000000000004696 161.0
BYD3_k127_327786_2 threonine efflux protein - - - 0.0000000000000000000000000000000000000002337 151.0
BYD3_k127_327786_3 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000001264 78.0
BYD3_k127_3279675_0 Belongs to the UPF0061 (SELO) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 424.0
BYD3_k127_3279675_1 PFAM AMP-dependent synthetase and ligase K20034 - 6.2.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004295 284.0
BYD3_k127_3279675_2 Belongs to the UPF0061 (SELO) family - - - 0.0000000000000000000002196 99.0
BYD3_k127_3282451_0 4Fe-4S dicluster domain K21834 - - 1.913e-227 713.0
BYD3_k127_3282451_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 510.0
BYD3_k127_3282451_2 nitrate reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005638 329.0
BYD3_k127_3282451_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003572 281.0
BYD3_k127_3282451_4 A domain family that is part of the cupin metalloenzyme superfamily. - - - 0.000000000000000000000000000000000000000000000000000000004269 208.0
BYD3_k127_3282451_5 Acyltransferase family - - - 0.000000000000000000004032 106.0
BYD3_k127_3284481_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 1.449e-258 802.0
BYD3_k127_3284481_1 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000664 158.0
BYD3_k127_3284481_2 Trypsin-like peptidase domain - - - 0.0000000000000000000000000000563 125.0
BYD3_k127_3289809_0 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 388.0
BYD3_k127_3289809_1 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006217 267.0
BYD3_k127_3289809_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006178 271.0
BYD3_k127_3289809_3 peptidase M48, Ste24p - - - 0.0000000000000000000000000000000000000000002486 159.0
BYD3_k127_3289809_4 AMP-binding enzyme K01895 - 6.2.1.1 0.00008558 47.0
BYD3_k127_3299687_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs K05541 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009023 448.0
BYD3_k127_3299687_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 331.0
BYD3_k127_3299687_2 Pseudouridine synthase K06177 - 5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001655 276.0
BYD3_k127_3299687_3 PFAM pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 - - 0.000000000000000000000000000000000000000000000000004973 185.0
BYD3_k127_3299687_4 OmpA family - - - 0.0000000000000000000000000000000000000000005697 173.0
BYD3_k127_3299687_5 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000001161 116.0
BYD3_k127_3299687_6 FecR protein - - - 0.0000000000000000000000000001772 132.0
BYD3_k127_3299697_0 L-asparaginase II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004056 392.0
BYD3_k127_3299697_1 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000004223 236.0
BYD3_k127_3299697_2 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000000000000000000000000000000002196 213.0
BYD3_k127_3312779_0 PFAM aminotransferase, class I and II K05825 - - 3.431e-201 632.0
BYD3_k127_3312779_1 beta' subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 533.0
BYD3_k127_3312779_2 Phenazine biosynthesis protein phzf family K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 491.0
BYD3_k127_3312779_3 PFAM Phosphoglycerate mutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 342.0
BYD3_k127_3312779_4 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 363.0
BYD3_k127_3312779_5 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001075 281.0
BYD3_k127_3312779_6 PFAM glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001421 294.0
BYD3_k127_3312779_7 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000001939 167.0
BYD3_k127_3319527_0 phosphoglycerate mutase K15634 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006206 282.0
BYD3_k127_3319527_1 Histidine kinase A domain protein K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000147 247.0
BYD3_k127_3330581_0 Alcohol dehydrogenase GroES domain protein K08322 - 1.1.1.380 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 520.0
BYD3_k127_3330581_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 450.0
BYD3_k127_3330581_2 Alginate lyase - - - 0.000000000000000000000000000000000000000000000000000000629 197.0
BYD3_k127_3330581_3 PFAM PfkB domain protein K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000002204 176.0
BYD3_k127_3330581_4 - - - - 0.00000000000000000000000000000000000000009196 153.0
BYD3_k127_3330581_5 transcriptional regulator - - - 0.000000000000000000000000000000000000008277 157.0
BYD3_k127_3350471_0 Bacterial protein of unknown function (DUF853) K06915 - - 8.338e-246 768.0
BYD3_k127_3350471_1 Belongs to the GARS family K01945 - 6.3.4.13 7.312e-210 658.0
BYD3_k127_3350471_2 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 427.0
BYD3_k127_3352532_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K11711 - 2.7.13.3 9.015e-244 775.0
BYD3_k127_3352532_1 Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane K11103 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004891 476.0
BYD3_k127_3352532_2 Bacterial extracellular solute-binding protein, family 7 K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 434.0
BYD3_k127_3352532_3 PFAM Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007851 367.0
BYD3_k127_3352532_4 response regulator, receiver K11712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 351.0
BYD3_k127_3352532_5 Protein of unknown function (DUF1653) - - - 0.000000000000000000000001118 112.0
BYD3_k127_3352532_6 Oxidoreductase-like protein, N-terminal - - - 0.00000000000000004947 89.0
BYD3_k127_3364740_0 enoyl-CoA hydratase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019 482.0
BYD3_k127_3364740_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 358.0
BYD3_k127_3364740_2 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005603 288.0
BYD3_k127_3364740_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000004996 226.0
BYD3_k127_3364740_4 Protein of unknown function (DUF1161) - - - 0.0000000000000008213 82.0
BYD3_k127_3365576_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 509.0
BYD3_k127_3365576_1 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 457.0
BYD3_k127_3365576_2 Acetyltransferase (GNAT) family K03395 - 2.3.1.60 0.00000000000000000000000000000000000000000000000009262 182.0
BYD3_k127_3365576_3 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000000000000000000000000004671 167.0
BYD3_k127_3373283_0 type II secretion system protein E K02454,K02652,K12276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005062 438.0
BYD3_k127_3373283_1 PFAM Mandelate racemase muconate lactonizing K01684 - 4.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000007378 237.0
BYD3_k127_3373283_2 Type II secretion system (T2SS), protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000003148 213.0
BYD3_k127_3373283_3 Type II secretory pathway pseudopilin - - - 0.0000000000000000000000000000000001664 138.0
BYD3_k127_3373283_4 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000003835 82.0
BYD3_k127_337490_0 Phenylacetate-CoA oxygenase subunit PaaA K02609 - 1.14.13.149 5.744e-195 611.0
BYD3_k127_337490_1 oxidoreductase FAD NAD(P)-binding domain protein K02613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 554.0
BYD3_k127_337490_2 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 443.0
BYD3_k127_337490_3 Phenylacetic acid catabolic protein K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 374.0
BYD3_k127_337490_4 TIGRFAM phenylacetate-CoA oxygenase, PaaJ subunit K02612 - - 0.0000000000000000000000000000000000000000000000000000000000000002 233.0
BYD3_k127_337490_5 Phenylacetate-CoA oxygenase subunit PaaB K02610 - - 0.00000000000000000000000000000000000000000000000002672 185.0
BYD3_k127_337490_6 Cysteine-rich secretory protein family - - - 0.0000000000000000000000000000000000000000000000000469 184.0
BYD3_k127_337490_7 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.00000000000000000000245 93.0
BYD3_k127_338865_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 512.0
BYD3_k127_338865_1 regulator - - - 0.000000000000000000000000000000000000000000000000000000000007158 220.0
BYD3_k127_338865_2 Cobalamin synthesis protein cobW C-terminal domain - - - 0.000000000000000000007599 108.0
BYD3_k127_3389019_0 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 454.0
BYD3_k127_3389019_1 Glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005121 255.0
BYD3_k127_3389019_2 - - - - 0.0000000000000000000000000000000000000000000000003695 187.0
BYD3_k127_3389019_3 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000000000000000000000000000522 151.0
BYD3_k127_3389019_4 - - - - 0.00000000000000000000000000000000001222 141.0
BYD3_k127_3389019_5 - - - - 0.000000000000000000000146 103.0
BYD3_k127_3389019_6 PFAM Extracellular ligand-binding receptor - - - 0.0000000000000000002103 91.0
BYD3_k127_3389233_0 - - - - 0.0 1088.0
BYD3_k127_3389233_1 - - - - 4.457e-310 968.0
BYD3_k127_3389233_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 537.0
BYD3_k127_3389233_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004802 281.0
BYD3_k127_3389233_5 - - - - 0.00000000000000000001959 106.0
BYD3_k127_339274_0 gluconate 5-dehydrogenase K00034,K00046 - 1.1.1.47,1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000002 268.0
BYD3_k127_339274_1 7TMR-DISM extracellular 2 K20971 - - 0.000000000000000000000000000000000000000000000000006486 203.0
BYD3_k127_339274_2 CHASE domain - - - 0.0000000000000000000000000000000000006387 142.0
BYD3_k127_339274_3 Uncharacterized protein conserved in bacteria (DUF2236) - - - 0.00000000000000000000003934 102.0
BYD3_k127_3409611_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 1.484e-242 757.0
BYD3_k127_3409611_1 20S proteasome, A and B subunits K07395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 467.0
BYD3_k127_3428709_0 belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 1.099e-270 835.0
BYD3_k127_3428709_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006612 580.0
BYD3_k127_3428709_2 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000001483 146.0
BYD3_k127_3428709_3 PFAM Short-chain dehydrogenase reductase SDR K22185 - 1.1.1.175 0.000000000000000009972 82.0
BYD3_k127_3428709_4 F5/8 type C domain - - - 0.0000002262 64.0
BYD3_k127_3431122_0 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008186 554.0
BYD3_k127_3431122_1 helix-turn-helix- domain containing protein, AraC type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 325.0
BYD3_k127_3431122_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006086 306.0
BYD3_k127_3443187_0 Tellurite resistance protein TerB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 412.0
BYD3_k127_3443187_1 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 358.0
BYD3_k127_3443187_2 probably involved in intracellular septation K06190 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004959 258.0
BYD3_k127_3443187_3 PFAM glutamine synthetase catalytic region K01915,K09470 - 6.3.1.11,6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000006117 212.0
BYD3_k127_3443187_4 Eukaryotic-type carbonic anhydrase K01674 - 4.2.1.1 0.0000000000000000000000000000000000000193 151.0
BYD3_k127_3443187_5 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000000000000000009637 130.0
BYD3_k127_345642_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1370.0
BYD3_k127_345642_1 PFAM ATP-binding region, ATPase domain protein K11711 - 2.7.13.3 0.0 1165.0
BYD3_k127_345642_2 Two component transcriptional regulator, LuxR family K13041 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006854 267.0
BYD3_k127_346636_0 Protein of unknown function (DUF815) K06923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 509.0
BYD3_k127_346636_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 426.0
BYD3_k127_346636_2 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 389.0
BYD3_k127_346636_3 Type II secretion system K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 332.0
BYD3_k127_346636_4 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000000000000000007956 222.0
BYD3_k127_346636_5 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000001528 207.0
BYD3_k127_346636_6 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.00000000000000002872 89.0
BYD3_k127_346636_7 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000974 79.0
BYD3_k127_3486907_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007955 527.0
BYD3_k127_3486907_1 TIGRFAM Phosphoserine phosphatase SerB K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 387.0
BYD3_k127_3486907_2 Belongs to the DEAD box helicase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 374.0
BYD3_k127_3486907_3 Thioredoxin-like domain - - - 0.0000000000000000000000000000000000000000000000000000002432 205.0
BYD3_k127_3486907_4 PFAM translation initiation factor SUI1 K03113 - - 0.00000000000000000000000000000000000000000000000000005715 189.0
BYD3_k127_3486907_5 Domain of unknown function (DUF4405) - - - 0.0000000000000000000000000000008734 127.0
BYD3_k127_3486907_6 Sigma-70, region 4 K03088 - - 0.00000000000000000000008117 111.0
BYD3_k127_3486907_7 Protein of unknown function (DUF3106) - - - 0.00000000000000003398 88.0
BYD3_k127_3486907_8 - - - - 0.00000000000006134 78.0
BYD3_k127_350088_0 Oxidoreductase FAD-binding domain K00523,K14581 - 1.17.1.1,1.18.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005592 539.0
BYD3_k127_350088_1 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007568 504.0
BYD3_k127_350088_2 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001634 269.0
BYD3_k127_353605_0 Basic membrane lipoprotein K02058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 554.0
BYD3_k127_353605_1 Guanine deaminase K01487 - 3.5.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000807 447.0
BYD3_k127_353605_2 transcriptional regulator - - - 0.00000000000000000000000000000000002505 145.0
BYD3_k127_353605_3 - - - - 0.000000000000000000000000000007953 123.0
BYD3_k127_353605_4 - - - - 0.00000000000000000001389 104.0
BYD3_k127_3536843_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1209.0
BYD3_k127_3536843_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 495.0
BYD3_k127_3546958_0 TIGRFAM nitrogen regulation protein NR(I) K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 2.599e-258 803.0
BYD3_k127_3546958_1 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 604.0
BYD3_k127_3546958_2 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 436.0
BYD3_k127_3546958_3 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 0.0000000000000000000000000000000000000000000000001341 176.0
BYD3_k127_3546958_4 - - - - 0.0000000000000000000000000000000000000000000000001344 182.0
BYD3_k127_3546958_5 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000004778 136.0
BYD3_k127_3555795_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 580.0
BYD3_k127_3555795_1 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 371.0
BYD3_k127_3555795_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006817 268.0
BYD3_k127_3555795_3 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000000003602 199.0
BYD3_k127_3556642_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007021 469.0
BYD3_k127_3556642_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 327.0
BYD3_k127_3573662_0 Transmembrane secretion effector - - - 6.274e-242 752.0
BYD3_k127_3573662_1 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 451.0
BYD3_k127_3573662_2 Signal transducing histidine kinase, homodimeric K03407 GO:0003674,GO:0005488,GO:0005515,GO:0019904 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 441.0
BYD3_k127_3573662_3 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 340.0
BYD3_k127_3573662_4 response regulator, receiver K03413 - - 0.00000000000000000000000000000000000000000000000000000000000001934 217.0
BYD3_k127_3573662_5 - - - - 0.00000000000000000000000000000000000003554 162.0
BYD3_k127_3582857_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0 1012.0
BYD3_k127_3582857_1 Bacterial regulatory proteins, crp family K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002412 363.0
BYD3_k127_3582857_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000002629 195.0
BYD3_k127_3620644_0 Secretin and TonB N terminus short domain K16088 - - 4.544e-273 861.0
BYD3_k127_3620644_1 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 322.0
BYD3_k127_3633764_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 2.149e-245 761.0
BYD3_k127_3633764_1 PAS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 527.0
BYD3_k127_3633764_2 NmrA-like family K19267 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 328.0
BYD3_k127_3633764_3 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000001522 206.0
BYD3_k127_3633764_4 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000000000003762 169.0
BYD3_k127_3633764_5 Universal stress protein family - - - 0.000000000000000001425 88.0
BYD3_k127_3638489_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 6.145e-308 955.0
BYD3_k127_3638489_1 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007193 489.0
BYD3_k127_3638489_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 437.0
BYD3_k127_3638489_3 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 GO:0000166,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003999,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0012505,GO:0016192,GO:0016208,GO:0016740,GO:0016757,GO:0016763,GO:0017076,GO:0018130,GO:0019438,GO:0030141,GO:0030554,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0034641,GO:0034654,GO:0034774,GO:0036094,GO:0036230,GO:0042119,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046483,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008172 331.0
BYD3_k127_3638489_4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001652 277.0
BYD3_k127_3638489_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001831 282.0
BYD3_k127_3638489_6 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000000000000000000000000000000000000002234 210.0
BYD3_k127_3638489_7 PFAM Cyclic nucleotide-binding - - - 0.000000000000000000000000000000000000000000000000000000003922 203.0
BYD3_k127_3638489_8 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000001931 191.0
BYD3_k127_3638489_9 - - - - 0.00000000000000000001747 100.0
BYD3_k127_3644330_0 Methyltransferase domain K19620 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 593.0
BYD3_k127_3644330_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 486.0
BYD3_k127_3644330_2 His Kinase A (phosphoacceptor) domain K02482,K19621,K19661 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 480.0
BYD3_k127_3644330_3 His Kinase A (phosphoacceptor) domain K19622 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008507 428.0
BYD3_k127_3644330_4 response regulator K19623 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 359.0
BYD3_k127_3644330_5 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000267 277.0
BYD3_k127_3644330_6 PFAM OsmC family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001471 250.0
BYD3_k127_3644330_7 PFAM regulatory protein, MarR - - - 0.0000000000000000000000000000000000000000000000000000000000006823 213.0
BYD3_k127_3644330_8 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000907 169.0
BYD3_k127_3653370_0 TIGRFAM penicillin-binding protein, 1A family K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 404.0
BYD3_k127_3653370_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003755 269.0
BYD3_k127_3653370_2 Protein of unknown function (DUF3309) - - - 0.0000000000000000000396 92.0
BYD3_k127_3653370_3 aconitate hydratase K01681 - 4.2.1.3 0.0000000000000001272 81.0
BYD3_k127_3657329_0 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 4.358e-208 654.0
BYD3_k127_3657329_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000001096 136.0
BYD3_k127_3665266_0 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 551.0
BYD3_k127_3665266_1 Sugar (and other) transporter K19577 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003363 548.0
BYD3_k127_3665266_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007888 437.0
BYD3_k127_3665266_3 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006607 407.0
BYD3_k127_3665266_4 Response regulator receiver modulated diguanylate cyclase phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 332.0
BYD3_k127_3665266_5 PTS IIA-like nitrogen-regulatory protein PtsN K02806 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008964 264.0
BYD3_k127_3665266_6 Sigma 54 modulation protein / S30EA ribosomal protein K05808 - - 0.000000000000000000000000000000000000000000000000000003919 192.0
BYD3_k127_3667439_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008662 410.0
BYD3_k127_3667439_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 372.0
BYD3_k127_3687488_0 FAD dependent oxidoreductase K00111 - 1.1.5.3 1.705e-303 939.0
BYD3_k127_3687488_1 Belongs to the FGGY kinase family K00880 - 2.7.1.53 1.389e-227 713.0
BYD3_k127_3687488_2 UTRA K03710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 450.0
BYD3_k127_3687488_3 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000000000000000000000000000003936 214.0
BYD3_k127_3688134_0 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 0.0 1074.0
BYD3_k127_3688134_1 Cytochrome c K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004482 532.0
BYD3_k127_3688134_2 PFAM response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003944 342.0
BYD3_k127_3688134_3 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 286.0
BYD3_k127_3688134_4 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000002059 224.0
BYD3_k127_3688134_5 lipoprotein involved in nitrous oxide reduction - - - 0.00000002063 67.0
BYD3_k127_3688134_6 - - - - 0.00000004283 54.0
BYD3_k127_3703450_0 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 1.239e-207 647.0
BYD3_k127_3703450_1 Outer membrane usher protein K07347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 494.0
BYD3_k127_3703450_2 Pili and flagellar-assembly chaperone, PapD N-terminal domain K07346 - - 0.000000000000000000000000000000000000003843 155.0
BYD3_k127_3703450_3 PFAM Spore coat protein U - - - 0.00000000000000000000000000000000058 136.0
BYD3_k127_3703450_4 Spore Coat Protein U domain - - - 0.000000000000000000000000004215 117.0
BYD3_k127_3703450_5 Cytochrome c - - - 0.000000000000000000000005691 102.0
BYD3_k127_3728419_0 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006545 593.0
BYD3_k127_3728419_1 Putative serine dehydratase domain K01753 - 4.3.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 446.0
BYD3_k127_3728419_2 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.0000000000000000000000000004962 113.0
BYD3_k127_3731931_0 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 563.0
BYD3_k127_3731931_1 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000000001684 220.0
BYD3_k127_3731931_2 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.00000000000000000000000000000000002362 134.0
BYD3_k127_3736477_0 PFAM cytochrome bd ubiquinol oxidase subunit I K00425 - 1.10.3.14 6.023e-219 687.0
BYD3_k127_3736477_1 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 607.0
BYD3_k127_3736477_2 cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008479 472.0
BYD3_k127_3736477_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 450.0
BYD3_k127_3736477_4 Belongs to the GbsR family - - - 0.000000000000000000000000000000000000000000000000000000001455 201.0
BYD3_k127_3741170_0 PFAM aminotransferase, class I and II K14267 - 2.6.1.17 3.216e-205 646.0
BYD3_k127_3741170_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009958 345.0
BYD3_k127_3741170_2 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 326.0
BYD3_k127_3785767_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 496.0
BYD3_k127_3785767_1 Reversible hydration of carbon dioxide K01673 GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0008150,GO:0008270,GO:0015976,GO:0016829,GO:0016835,GO:0016836,GO:0043167,GO:0043169,GO:0046872,GO:0046914 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 394.0
BYD3_k127_3785767_2 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005681 266.0
BYD3_k127_3785767_3 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000001307 124.0
BYD3_k127_3786311_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 1.072e-223 702.0
BYD3_k127_3786311_1 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 374.0
BYD3_k127_3790358_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009988 360.0
BYD3_k127_3790358_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006975 319.0
BYD3_k127_3790358_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 295.0
BYD3_k127_3790358_3 PFAM aminoacyl-tRNA synthetase class Ib K01867 GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 286.0
BYD3_k127_3791361_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 2.377e-315 978.0
BYD3_k127_3791361_1 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 3.493e-210 656.0
BYD3_k127_3791361_2 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 459.0
BYD3_k127_3791361_3 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 445.0
BYD3_k127_3791361_4 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 373.0
BYD3_k127_380516_0 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 474.0
BYD3_k127_380516_1 Tripartite ATP-independent periplasmic transporters, DctQ component K21394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 314.0
BYD3_k127_380516_2 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit K21393 - - 0.0007563 44.0
BYD3_k127_3853445_0 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005495 334.0
BYD3_k127_3853445_1 esterase of the alpha beta K07002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 285.0
BYD3_k127_3853445_2 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000003544 110.0
BYD3_k127_3859935_0 Belongs to the GcvT family K00302 - 1.5.3.1 4.582e-259 808.0
BYD3_k127_3859935_1 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009618 357.0
BYD3_k127_3859935_2 ErfK ybiS ycfS ynhG family protein - - - 0.000000000000000000000000000000000000000000000000002924 185.0
BYD3_k127_3859935_3 Sarcosine oxidase, gamma subunit family K00305 - 1.5.3.1 0.000000000000000000000000000000000004843 145.0
BYD3_k127_3859935_4 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000004345 61.0
BYD3_k127_3864474_0 AIR synthase related protein domain protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 484.0
BYD3_k127_3864474_1 TrbL/VirB6 plasmid conjugal transfer protein K03201 - - 0.00000000000002704 86.0
BYD3_k127_3874550_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein K05898 - 1.3.99.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 502.0
BYD3_k127_3874550_1 PFAM Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 422.0
BYD3_k127_3874550_2 NIPSNAP - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 377.0
BYD3_k127_3874550_3 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004933 317.0
BYD3_k127_3874550_4 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000001454 261.0
BYD3_k127_3874550_5 Gram-negative porin - - - 0.0000000000000000000000000000000000000000000005093 179.0
BYD3_k127_3874550_7 DnaJ molecular chaperone homology domain - - - 0.00000003261 65.0
BYD3_k127_3881406_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 2.18e-277 860.0
BYD3_k127_3881406_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 310.0
BYD3_k127_3881406_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000003624 133.0
BYD3_k127_3897462_0 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 3.497e-224 705.0
BYD3_k127_3897462_1 PrpF protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 509.0
BYD3_k127_3897462_2 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009882 471.0
BYD3_k127_3897462_3 HpcH/HpaI aldolase/citrate lyase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 377.0
BYD3_k127_3897462_4 PFAM fumarate lyase K01857 - 5.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000156 244.0
BYD3_k127_3905570_0 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 4.429e-248 773.0
BYD3_k127_3905570_1 PFAM Cyclic nucleotide-binding K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 411.0
BYD3_k127_3905570_2 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005815 376.0
BYD3_k127_3905570_3 Tfp pilus assembly protein FimV - - - 0.0000000000000000000001247 102.0
BYD3_k127_3905570_4 Aminoglycoside phosphotransferase - - - 0.00000000000000000000128 96.0
BYD3_k127_3914718_0 glutamine synthetase K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 593.0
BYD3_k127_3914718_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 571.0
BYD3_k127_3914718_2 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003739 462.0
BYD3_k127_3914718_3 fumarylacetoacetate (FAA) hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 394.0
BYD3_k127_3914718_4 Nudix hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 330.0
BYD3_k127_3914718_5 ferredoxin K04755 - - 0.00000000000000000000000001661 123.0
BYD3_k127_3919428_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 3.89e-205 643.0
BYD3_k127_3919428_1 Peptidase M23B K08259 - 3.4.24.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 357.0
BYD3_k127_3919794_0 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 381.0
BYD3_k127_3919794_1 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 319.0
BYD3_k127_3919794_2 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K01708,K16846 - 4.2.1.42,4.4.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 304.0
BYD3_k127_394030_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 6.618e-204 640.0
BYD3_k127_394030_1 Binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000000000000000000000000000000000007364 232.0
BYD3_k127_394030_2 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000000000000000000000000004066 226.0
BYD3_k127_394030_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.000000000000000000000000000000000000000000000000005317 181.0
BYD3_k127_394030_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000000000000000000000001004 173.0
BYD3_k127_394030_5 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.00000000000000000000000004454 109.0
BYD3_k127_3943137_0 COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 495.0
BYD3_k127_3943137_1 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 415.0
BYD3_k127_3943137_2 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007674 361.0
BYD3_k127_3943137_3 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005475 342.0
BYD3_k127_3943137_4 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 291.0
BYD3_k127_3943137_5 protein-(glutamine-N5) methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006753 285.0
BYD3_k127_3943137_6 Acyl-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008271 266.0
BYD3_k127_3943137_7 6-pyruvoyl tetrahydropterin synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000001228 223.0
BYD3_k127_3958353_0 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 448.0
BYD3_k127_3958353_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 375.0
BYD3_k127_3958353_2 Trypsin-like peptidase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001773 276.0
BYD3_k127_3958353_3 - - - - 0.00000000000000000000003456 107.0
BYD3_k127_3969897_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 557.0
BYD3_k127_3969897_1 Transcriptional regulator K05596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 462.0
BYD3_k127_3969897_2 Bacterial transcriptional regulator - - - 0.0000000000000000000000000000004352 122.0
BYD3_k127_3969897_3 Phosphate starvation-inducible protein, PSIF - - - 0.00000000000000000000000002676 124.0
BYD3_k127_3979147_0 ROK family - - - 8.639e-194 611.0
BYD3_k127_3979147_1 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 362.0
BYD3_k127_3979147_2 ATPases associated with a variety of cellular activities K02056,K10545 - 3.6.3.17 0.000000000000000000000000000000000000000000000000003106 181.0
BYD3_k127_398262_0 dehydrogenase, E1 component K00164 - 1.2.4.2 0.0 1230.0
BYD3_k127_398262_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 2.412e-195 617.0
BYD3_k127_3982994_0 Polysaccharide biosynthesis protein - - - 9.963e-289 899.0
BYD3_k127_3982994_1 Glycosyltransferase like family 2 - - - 1.652e-224 717.0
BYD3_k127_3982994_2 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007266 477.0
BYD3_k127_3982994_3 NAD(P)-dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004424 464.0
BYD3_k127_3982994_4 Nad-dependent epimerase dehydratase K00091,K01784 - 1.1.1.219,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 339.0
BYD3_k127_3982994_5 Sugar transferase K13012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 301.0
BYD3_k127_3982994_6 I - Lipid transport and metabolism - - - 0.0000000000000000000000000000000000000000000167 165.0
BYD3_k127_3982994_7 Acyltransferase - - - 0.000000000000000000000000000000000000583 153.0
BYD3_k127_3982994_8 - - - - 0.000000001216 71.0
BYD3_k127_4004200_0 Histidine kinase K07645,K07649 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 531.0
BYD3_k127_4004200_1 PFAM regulatory protein TetR K05501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 304.0
BYD3_k127_4004200_2 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009579 296.0
BYD3_k127_4028642_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008734 554.0
BYD3_k127_4028642_1 LrgB-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 301.0
BYD3_k127_4028642_2 Domain of unknown function (DUF3597) - - - 0.000000000000000000000000000000000000001524 152.0
BYD3_k127_4028642_3 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000000000003846 121.0
BYD3_k127_4028642_4 LrgA family K06518 - - 0.0000000000000000000000007891 109.0
BYD3_k127_4030150_0 Ornithine-acyl acyl carrier protein N-acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 426.0
BYD3_k127_4030150_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 386.0
BYD3_k127_4030150_2 SMART regulatory protein, ArsR K03892 - - 0.0000000000000000000000000000000000000002494 151.0
BYD3_k127_4073745_0 Belongs to the ClpA ClpB family K03694 - - 4.271e-292 900.0
BYD3_k127_4073745_1 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.000000000000000000000000000000000000000000000000003185 190.0
BYD3_k127_4073745_2 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 0.0000000000000000000000001991 105.0
BYD3_k127_4083940_0 Proposed nucleic acid binding domain - - - 0.0 2018.0
BYD3_k127_4083940_1 AAA domain (dynein-related subfamily) - - - 4.524e-202 634.0
BYD3_k127_4083940_2 endoribonuclease L-PSP - - - 0.000000803 51.0
BYD3_k127_4121047_0 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 541.0
BYD3_k127_4121047_1 regulatory protein GntR HTH - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 350.0
BYD3_k127_4121047_2 TIGRFAM Xanthine dehydrogenase accessory protein XdhC K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002832 348.0
BYD3_k127_4121047_3 PFAM Polysaccharide deacetylase K01452 - 3.5.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000002239 263.0
BYD3_k127_4121047_4 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.0000000000000000000000000000000000000000000000000000000002807 204.0
BYD3_k127_4121047_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000000000000000000000000000000000000000000000000006024 189.0
BYD3_k127_4121047_6 Sel1-like repeats. K07126 - - 0.00000000000000000002656 101.0
BYD3_k127_4138344_0 PFAM H transporting two-sector ATPase alpha beta subunit central region K02412 - 3.6.3.14 2.352e-217 683.0
BYD3_k127_4138344_1 The M ring may be actively involved in energy transduction K02409 - - 1.425e-205 654.0
BYD3_k127_4138344_2 flagellar motor switch protein K02416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 537.0
BYD3_k127_4138344_3 flagellar motor switch protein K02410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 497.0
BYD3_k127_4138344_4 Flagellar motor switch protein flin K02417,K03225 - - 0.00000000000000000000000000000000000000000000002967 177.0
BYD3_k127_4138344_5 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000000002305 163.0
BYD3_k127_4138344_6 flagellar assembly protein FliH K02411 - - 0.0000000000000000000000000000000000000001667 158.0
BYD3_k127_4138344_7 flagellar export protein FliJ K02413 - - 0.00000000000000000001057 97.0
BYD3_k127_4138344_8 flagellar biosynthesis protein, FliO K02418 - - 0.0000001106 56.0
BYD3_k127_4138344_9 Flagellar hook-length control K02414 - - 0.00005749 56.0
BYD3_k127_4140064_0 alanine symporter K03310 - - 6.747e-242 758.0
BYD3_k127_4140064_1 Cro/C1-type HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 447.0
BYD3_k127_4140064_2 Belongs to the asparaginase 1 family K01424 GO:0003674,GO:0003824,GO:0004067,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006530,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009066,GO:0009068,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0032787,GO:0033345,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:0072329,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 382.0
BYD3_k127_4140064_3 PFAM Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000007022 243.0
BYD3_k127_4140064_4 PFAM Response regulator receiver domain - - - 0.00000002945 55.0
BYD3_k127_4168460_0 surface antigen (D15) K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 551.0
BYD3_k127_4168460_1 VWA domain containing CoxE-like protein K09989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008958 331.0
BYD3_k127_4168460_2 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007651 313.0
BYD3_k127_4171160_0 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 606.0
BYD3_k127_4171160_1 Chemotaxis sensory transducer K03776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002525 499.0
BYD3_k127_4171160_2 Protein of unknown function (DUF1631) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008404 398.0
BYD3_k127_4171160_3 Psort location Cytoplasmic, score 8.96 K09941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003159 262.0
BYD3_k127_4171160_4 metal-binding protein - - - 0.00000000000000000000000000000000000000000000000000000001098 206.0
BYD3_k127_4171160_5 Protein of unknown function (DUF1223) - - - 0.000000000000000000000000000000000000000000000000000003575 201.0
BYD3_k127_4171160_6 PFAM Copper binding periplasmic protein CusF - - - 0.0000000000000000006022 93.0
BYD3_k127_4171160_7 - - - - 0.000003532 55.0
BYD3_k127_4171160_8 Cation efflux family - - - 0.0007427 42.0
BYD3_k127_4204772_0 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 521.0
BYD3_k127_4204772_1 ATPase activity K06027 - 3.6.4.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 336.0
BYD3_k127_4204772_2 Domain of unknown function (DUF4157) - - - 0.000000000000000000000000000000000000238 159.0
BYD3_k127_4204772_3 Domain of unknown function (DUF4157) - - - 0.0000000000448 71.0
BYD3_k127_4204772_4 - - - - 0.0000000003645 69.0
BYD3_k127_4221645_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 1.139e-253 786.0
BYD3_k127_4221645_1 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 399.0
BYD3_k127_4221645_2 phenylacetic acid degradation protein PaaD K02614 GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790 - 0.000000000000000000000000000000000000000000000000000000000000000001112 242.0
BYD3_k127_4221645_3 - - - - 0.00008505 48.0
BYD3_k127_42300_0 Glycoside-hydrolase family GH114 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 350.0
BYD3_k127_42300_1 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000507 335.0
BYD3_k127_42300_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000009713 127.0
BYD3_k127_4237183_0 Signal transduction histidine kinase - - - 2.372e-222 705.0
BYD3_k127_4237183_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 451.0
BYD3_k127_4237183_2 Domain of unknown function (DUF4390) - - - 0.0000000000000000000000000000000000000000000671 174.0
BYD3_k127_4244562_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 2.737e-260 806.0
BYD3_k127_4244562_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 1.766e-244 758.0
BYD3_k127_4244562_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 5.294e-243 758.0
BYD3_k127_4244562_3 synthesis repressor, PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007075 258.0
BYD3_k127_4248711_0 type II secretion system protein E K02283,K20527 - - 6.828e-227 708.0
BYD3_k127_4248711_1 AAA domain K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 319.0
BYD3_k127_4248711_2 Type II secretion system K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 322.0
BYD3_k127_4248711_3 Type II secretion system K12510 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000117 284.0
BYD3_k127_4248711_4 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000000000000000000000000000000007051 201.0
BYD3_k127_4248711_5 PFAM TadE family protein - - - 0.000000000000000000000000000567 123.0
BYD3_k127_4248711_6 Protein of unknown function (DUF3613) - - - 0.0002028 49.0
BYD3_k127_4254513_0 Topoisomerase DNA binding C4 zinc finger K07448 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 349.0
BYD3_k127_4254513_1 PFAM DTW domain containing protein K05812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 331.0
BYD3_k127_4254513_2 pyridoxamine 5'-phosphate oxidase-related K07006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 286.0
BYD3_k127_4254513_3 Activator of Hsp90 ATPase 1 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004429 243.0
BYD3_k127_4254513_4 COG3805 Aromatic ring-cleaving dioxygenase K10253 - - 0.00000000000000000000000000000000000000000000000000000002379 200.0
BYD3_k127_427319_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K09970 - - 1.331e-196 619.0
BYD3_k127_427319_1 extracellular solute-binding protein, family 3 K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 563.0
BYD3_k127_427319_2 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 355.0
BYD3_k127_427319_3 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002674 265.0
BYD3_k127_4280061_0 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000494 329.0
BYD3_k127_4280061_1 transcriptional regulator, Rrf2 family K13771 - - 0.0000000000000000000000000000000000000000000000000000001301 199.0
BYD3_k127_4291245_0 PFAM Glyoxalase bleomycin resistance protein dioxygenase K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 512.0
BYD3_k127_4291245_1 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 317.0
BYD3_k127_4291245_2 PFAM regulatory protein AsnC Lrp family K03719 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001097 270.0
BYD3_k127_4307108_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 2.813e-208 649.0
BYD3_k127_4307108_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 342.0
BYD3_k127_4307108_2 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000000000002928 132.0
BYD3_k127_431045_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 551.0
BYD3_k127_431045_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 480.0
BYD3_k127_431045_2 Thioesterase-like superfamily K01075 - 3.1.2.23 0.000000000000000000000000000000000000000000000000000000000000000000004223 236.0
BYD3_k127_4335902_0 NAD(P) transhydrogenase, alpha subunit K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 563.0
BYD3_k127_4335902_1 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002245 261.0
BYD3_k127_4335902_2 pyridoxamine 5-phosphate - - - 0.0000000000000000000000000000000000000000000000003091 181.0
BYD3_k127_4335902_3 Pfam:Pyridox_oxidase K01768 - 4.6.1.1 0.0000000000000000002932 96.0
BYD3_k127_4350727_0 PFAM Periplasmic binding protein LacI transcriptional regulator K10439,K10552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 544.0
BYD3_k127_4350727_1 pfkB family carbohydrate kinase K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000001877 191.0
BYD3_k127_4350727_2 Belongs to the binding-protein-dependent transport system permease family K10553 - - 0.0000000000000000099 85.0
BYD3_k127_435580_0 Belongs to the enoyl-CoA hydratase isomerase family K20036 - 4.2.1.155 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 355.0
BYD3_k127_435580_1 Thiolase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 345.0
BYD3_k127_4359890_0 Sulfate transporter antisigma-factor antagonist STAS K03321 - - 1.615e-236 741.0
BYD3_k127_4359890_1 Flp/Fap pilin component - - - 0.000000006253 60.0
BYD3_k127_4360699_0 Transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 2.495e-282 872.0
BYD3_k127_4360699_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008273 547.0
BYD3_k127_4360699_2 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 474.0
BYD3_k127_4360699_3 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006481 402.0
BYD3_k127_4360699_4 Tetracycline transcriptional repressor MAATS-type K03577 - - 0.000000000000000000000000000000000000000000000000000000000000000001929 234.0
BYD3_k127_439934_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 1.134e-203 640.0
BYD3_k127_439934_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 320.0
BYD3_k127_439934_2 TIGRFAM NADH-quinone oxidoreductase, chain G K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003629 273.0
BYD3_k127_439934_3 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001361 259.0
BYD3_k127_439934_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000000000001665 171.0
BYD3_k127_4403136_0 NAD-dependent epimerase dehydratase K18981 - 1.1.1.203 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007135 468.0
BYD3_k127_4403136_1 SMP-30/Gluconolaconase/LRE-like region K14274 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006442 411.0
BYD3_k127_4403136_2 TRAP dicarboxylate transporter K21395 - - 0.0000000000000341 85.0
BYD3_k127_4421316_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1101.0
BYD3_k127_4421316_1 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 375.0
BYD3_k127_4421316_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000003787 244.0
BYD3_k127_4421316_3 Belongs to the skp family K06142 - - 0.0000000000000000000000000000000000000000000000000000000000001074 217.0
BYD3_k127_4428532_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0 1023.0
BYD3_k127_4428532_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008198 395.0
BYD3_k127_4428532_2 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000008266 207.0
BYD3_k127_4428532_3 PFAM Cytochrome c, class I K08738 - - 0.00000000000000000000000000000000000004249 146.0
BYD3_k127_4428532_4 - - - - 0.000000000000000000000313 99.0
BYD3_k127_4436578_0 Two component regulator propeller K00936 - 2.7.13.3 1.529e-216 701.0
BYD3_k127_4436578_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 473.0
BYD3_k127_4443902_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 5.862e-195 623.0
BYD3_k127_4443902_1 COG0451 Nucleoside-diphosphate-sugar epimerases K08679,K17947 - 5.1.3.25,5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005525 418.0
BYD3_k127_4443902_2 Two component transcriptional regulator K02483,K07666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 297.0
BYD3_k127_4443902_3 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000258 208.0
BYD3_k127_4443902_4 PFAM ATP-binding region, ATPase domain protein K07645 - 2.7.13.3 0.0000000000000000000000000000003551 138.0
BYD3_k127_4443902_5 SNARE associated Golgi protein - - - 0.0000000000000000000000724 102.0
BYD3_k127_4452783_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 544.0
BYD3_k127_4452783_1 Auxin Efflux Carrier K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009248 436.0
BYD3_k127_4468239_0 Acetyl-coenzyme A transporter 1 K08218 - - 1.788e-211 669.0
BYD3_k127_4468239_1 peptidase M48, Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 304.0
BYD3_k127_4468239_2 AMP-binding enzyme C-terminal domain K00666,K16876 - 6.2.1.31 0.00000000000000000000002505 102.0
BYD3_k127_4468844_0 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 516.0
BYD3_k127_4468844_1 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000000000000000000000001291 215.0
BYD3_k127_4468844_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000001585 107.0
BYD3_k127_4477709_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 535.0
BYD3_k127_4477709_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 445.0
BYD3_k127_4477709_2 Signal transducing histidine kinase, homodimeric K03407 GO:0003674,GO:0005488,GO:0005515,GO:0019904 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 374.0
BYD3_k127_4477709_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004316 332.0
BYD3_k127_4497905_0 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 570.0
BYD3_k127_4497905_1 binding-protein-dependent transport systems inner membrane component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007876 524.0
BYD3_k127_4497905_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003293 396.0
BYD3_k127_4497905_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 318.0
BYD3_k127_4497905_4 - - - - 0.0000000001129 65.0
BYD3_k127_4505731_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007837 606.0
BYD3_k127_4505731_1 PFAM acyl-CoA dehydrogenase domain protein K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 541.0
BYD3_k127_4505731_2 PFAM thioesterase superfamily protein - - - 0.00000000000000000000000000000000000000000000000000003063 190.0
BYD3_k127_4505731_3 Domain of unknown function (DUF4399) - - - 0.0000000000000000000000000000000000000000008581 163.0
BYD3_k127_455030_0 Ni,Fe-hydrogenase I large subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 414.0
BYD3_k127_455030_1 [NiFe]-hydrogenase assembly, chaperone, HybE - - - 0.00000000000000000000000000000000000000000000000000000000001026 215.0
BYD3_k127_455030_2 Rubredoxin - - - 0.000000000000000000000000000000000000000388 153.0
BYD3_k127_455030_3 HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.0000000000000000000000000001487 114.0
BYD3_k127_455030_4 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009898,GO:0010467,GO:0016020,GO:0016151,GO:0019538,GO:0019897,GO:0019898,GO:0031234,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0051604,GO:0071704,GO:0071944,GO:0098552,GO:0098562,GO:1901564 - 0.0000000000000000000000000003684 117.0
BYD3_k127_4554677_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0 1021.0
BYD3_k127_4554677_1 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 614.0
BYD3_k127_4554677_2 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000002049 225.0
BYD3_k127_4554677_3 Domain of unknown function (DUF4212) - - - 0.00000000000000000000000000000000000000207 149.0
BYD3_k127_4554677_4 - - - - 0.0000000000000000000000000000004601 126.0
BYD3_k127_4573256_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 503.0
BYD3_k127_4573256_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001559 258.0
BYD3_k127_4573256_2 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000000000000000000000006684 196.0
BYD3_k127_4573256_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000005977 156.0
BYD3_k127_4573256_4 Chemoreceptor zinc-binding domain - - - 0.00000000000000001175 96.0
BYD3_k127_4589321_0 PFAM peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0 1497.0
BYD3_k127_4589321_1 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016043,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901135,GO:1901576 3.1.3.11 6.457e-201 627.0
BYD3_k127_4589321_2 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000000000000000000000000001529 207.0
BYD3_k127_4589321_3 Oxidative deamination of D-amino acids K00285 - 1.4.5.1 0.000000000000000002269 84.0
BYD3_k127_4589321_4 - - - - 0.00006513 47.0
BYD3_k127_4596432_0 Amidohydrolase K07046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009327 449.0
BYD3_k127_4596432_1 KR domain K18333 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 445.0
BYD3_k127_4596432_2 PFAM helix-turn-helix protein RpiR K19337 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008381 392.0
BYD3_k127_4596432_3 PFAM Mandelate racemase muconate lactonizing K18334 - 4.2.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 340.0
BYD3_k127_4596432_4 L-rhamnose mutarotase K03534 - 5.1.3.32 0.00000000000000000000000000000000000000000000000000001073 191.0
BYD3_k127_4598765_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 2.16e-231 725.0
BYD3_k127_4598765_1 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004591 539.0
BYD3_k127_4598765_2 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 447.0
BYD3_k127_4598765_3 Nudix hydrolase K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009223 279.0
BYD3_k127_4598765_4 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000000000000000000001303 174.0
BYD3_k127_4598765_5 Protein of unknown function (DUF2818) - - - 0.0000000000000000000000000000000001373 135.0
BYD3_k127_4609017_0 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 612.0
BYD3_k127_4609017_1 Endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 469.0
BYD3_k127_4609017_2 Histidine kinase K02484,K07645 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000003268 266.0
BYD3_k127_4609017_3 response regulator K02483,K07666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001294 248.0
BYD3_k127_4613465_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 2.889e-237 737.0
BYD3_k127_4613465_1 site-specific recombinase - - - 3.775e-233 744.0
BYD3_k127_4613465_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004912 415.0
BYD3_k127_4613465_3 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 390.0
BYD3_k127_4613465_4 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009 287.0
BYD3_k127_4613465_5 Chalcone isomerase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004624 274.0
BYD3_k127_4613465_6 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000003442 231.0
BYD3_k127_4613465_7 PFAM ApaG domain protein K06195 - - 0.000000000000000000000000000000000000000000000000000000000005379 212.0
BYD3_k127_4613465_8 Belongs to the CinA family K03743 - 3.5.1.42 0.00000000000000005126 87.0
BYD3_k127_4621415_0 Rieske 2Fe-2S K00499 - 1.14.15.7 3.205e-210 657.0
BYD3_k127_4621415_1 of the drug metabolite transporter (DMT) superfamily K15270 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009612 402.0
BYD3_k127_4621415_2 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 384.0
BYD3_k127_4621415_3 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000001429 161.0
BYD3_k127_4621415_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000000000000003675 108.0
BYD3_k127_4643742_0 Periplasmic binding protein domain K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008212 563.0
BYD3_k127_4643742_1 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 359.0
BYD3_k127_4643742_2 MlaD protein K06192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 353.0
BYD3_k127_4643742_3 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006042 250.0
BYD3_k127_4643742_4 ABC-type transport auxiliary lipoprotein component K09857 - - 0.0000000000000000000000000000000000000002474 156.0
BYD3_k127_4643742_5 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.00000000001017 64.0
BYD3_k127_4649893_0 Sigma-54 interaction domain K02481,K10126,K10941 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 1.357e-196 623.0
BYD3_k127_4649893_1 His Kinase A (phosphoacceptor) domain K10125 - 2.7.13.3 1.656e-196 632.0
BYD3_k127_4649893_2 PFAM ABC transporter K10004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 372.0
BYD3_k127_4649893_3 Tetracyclin repressor, C-terminal all-alpha domain - - - 0.0000000342 56.0
BYD3_k127_4650835_0 PFAM isocitrate isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 472.0
BYD3_k127_4650835_1 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 463.0
BYD3_k127_4650835_2 PFAM alpha beta hydrolase fold K01561 - 3.8.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 457.0
BYD3_k127_4650835_3 EamA-like transporter family - - - 0.000000000000000000006638 92.0
BYD3_k127_4654851_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 426.0
BYD3_k127_4654851_1 AraC family transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007731 302.0
BYD3_k127_4654851_2 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006752 307.0
BYD3_k127_4654851_4 Haloacid dehalogenase-like hydrolase K19270 - 3.1.3.23 0.000003686 51.0
BYD3_k127_4691134_0 AMP-binding enzyme K01897 - 6.2.1.3 2.191e-269 833.0
BYD3_k127_4691134_1 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004241 316.0
BYD3_k127_4691134_2 Choline/ethanolamine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 321.0
BYD3_k127_4691134_3 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000001721 129.0
BYD3_k127_4691134_4 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.000000000000000000636 85.0
BYD3_k127_4733328_0 homoserine kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000003843 220.0
BYD3_k127_4733328_1 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000002885 209.0
BYD3_k127_4733328_2 Helix-turn-helix domain protein - - - 0.000000000000000000000000000008856 124.0
BYD3_k127_474641_0 Belongs to the glutamate synthase family - - - 2.721e-250 781.0
BYD3_k127_474641_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000002116 175.0
BYD3_k127_474641_2 Bacteriophage replication gene A protein (GPA) - - - 0.0000000003779 60.0
BYD3_k127_4760993_0 SMART Nucleotide binding protein, PINc K07175 - - 4.972e-273 850.0
BYD3_k127_4760993_1 PFAM aminotransferase, class I and II K14260 - 2.6.1.2,2.6.1.66 1.877e-225 702.0
BYD3_k127_4760993_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 311.0
BYD3_k127_4760993_3 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000001644 167.0
BYD3_k127_4760993_4 Protein of unknown function (DUF498/DUF598) - - - 0.00000000000000000000000000000000000000003909 155.0
BYD3_k127_476929_0 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 419.0
BYD3_k127_476929_1 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000008711 126.0
BYD3_k127_476929_2 PFAM Multiple antibiotic resistance (MarC)-related K05595 - - 0.0000000000000000000000000006179 125.0
BYD3_k127_4779311_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 6.461e-245 767.0
BYD3_k127_4779311_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 6.579e-223 696.0
BYD3_k127_4779311_10 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000004977 211.0
BYD3_k127_4779311_11 Belongs to the BolA IbaG family - - - 0.00000000000000000000000000002381 133.0
BYD3_k127_4779311_12 STAS domain K07122 - - 0.00000000000000002745 85.0
BYD3_k127_4779311_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 571.0
BYD3_k127_4779311_3 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 471.0
BYD3_k127_4779311_4 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 436.0
BYD3_k127_4779311_5 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 416.0
BYD3_k127_4779311_6 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 395.0
BYD3_k127_4779311_7 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 365.0
BYD3_k127_4779311_8 toluene tolerance family protein K07323 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 287.0
BYD3_k127_4779311_9 PFAM VacJ family lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 289.0
BYD3_k127_4782296_0 TIGRFAM type I secretion outer membrane protein, TolC K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 547.0
BYD3_k127_4782296_1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase K02527 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 518.0
BYD3_k127_4782296_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 416.0
BYD3_k127_4782296_3 Glycosyl transferase family 2 K12984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000259 267.0
BYD3_k127_4782296_4 Methyltransferase type 11 K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000003372 190.0
BYD3_k127_4782296_5 O-Antigen ligase K02847 - - 0.0000000000000000000000000000000000000000000000003502 199.0
BYD3_k127_4782296_6 SMART Rhodanese domain protein - - - 0.0000000000000000000000000000000000001949 147.0
BYD3_k127_4782296_7 hydrolase of the alpha K07019 - - 0.0000001395 55.0
BYD3_k127_4802914_0 PFAM homocysteine S-methyltransferase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007494 612.0
BYD3_k127_4802914_1 FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 308.0
BYD3_k127_4802914_2 Cytochrome b5-like Heme/Steroid binding domain - - - 0.00000000000000000000000000000000000000003885 154.0
BYD3_k127_4835916_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1723.0
BYD3_k127_4835916_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004463 388.0
BYD3_k127_4835916_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 354.0
BYD3_k127_4835916_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 311.0
BYD3_k127_4835916_4 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000009057 197.0
BYD3_k127_4835916_5 Cytochrome c - - - 0.000000000000000000000000000000001935 138.0
BYD3_k127_4886774_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000002825 258.0
BYD3_k127_4886774_1 PFAM CBS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002717 254.0
BYD3_k127_4892701_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 9.325e-223 698.0
BYD3_k127_4892701_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 461.0
BYD3_k127_4892701_2 Tfp pilus assembly protein FimV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 468.0
BYD3_k127_4892701_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 312.0
BYD3_k127_4892701_4 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006481 256.0
BYD3_k127_4892701_5 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000008073 257.0
BYD3_k127_4892701_6 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000000000000000000006793 114.0
BYD3_k127_4896778_0 interspecies interaction between organisms - GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 547.0
BYD3_k127_4896778_1 PFAM type III secretion system inner membrane P protein K03226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006581 326.0
BYD3_k127_4896778_10 YopJ Serine/Threonine acetyltransferase K08598 - - 0.00000000000000000000000008029 121.0
BYD3_k127_4896778_11 TIGRFAM type III secretion protein, HrpO family K03227 - - 0.0000000000000000000000008651 116.0
BYD3_k127_4896778_12 - - - - 0.000000000000000000000002813 112.0
BYD3_k127_4896778_13 Regulator - - - 0.000000000000000000000004192 116.0
BYD3_k127_4896778_15 PFAM Major facilitator superfamily K02575 - - 0.00000000000000000000594 95.0
BYD3_k127_4896778_17 - - - - 0.000000004485 68.0
BYD3_k127_4896778_18 Transposase - - - 0.000001378 53.0
BYD3_k127_4896778_2 Type III Secretion K03228 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000783 299.0
BYD3_k127_4896778_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009571 303.0
BYD3_k127_4896778_4 TIGRFAM type III secretion protein, HrcV family K03230 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001279 247.0
BYD3_k127_4896778_5 Regulatory protein HrpB - GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0030260,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0044403,GO:0044409,GO:0044419,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0060255,GO:0065007,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000001267 261.0
BYD3_k127_4896778_6 Tir chaperone family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001017 236.0
BYD3_k127_4896778_8 TIGRFAM type III secretion system apparatus protein YscQ HrcQ K03225 - - 0.000000000000000000000000000000000000000006295 167.0
BYD3_k127_4896778_9 - - - - 0.0000000000000000000000000000000000000008235 168.0
BYD3_k127_4942676_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K11747 - - 5.199e-276 861.0
BYD3_k127_4942676_1 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 541.0
BYD3_k127_4942676_2 Glycogen debranching enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 384.0
BYD3_k127_4942676_3 response regulator, receiver - - - 0.000000000000004388 85.0
BYD3_k127_4946682_0 PFAM FAD linked oxidase domain protein K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 6.002e-285 880.0
BYD3_k127_4946682_1 Carbamoyl-phosphate synthase L chain, ATP-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 580.0
BYD3_k127_4946682_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004129 521.0
BYD3_k127_4946682_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 338.0
BYD3_k127_4946682_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000000000000000000000004945 216.0
BYD3_k127_4946682_5 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000002672 154.0
BYD3_k127_4946682_6 phosphorelay sensor kinase activity K03407,K10909,K12132 - 2.7.11.1,2.7.13.3 0.000000000000000000000000000000000001088 161.0
BYD3_k127_4946682_7 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.0000000000000000000000002097 105.0
BYD3_k127_496406_0 similarity to GP 3192745 - - - 1.107e-222 699.0
BYD3_k127_496406_1 Glutathione S-transferase - - - 0.000002831 53.0
BYD3_k127_4968739_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406,K03776,K05874 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 433.0
BYD3_k127_4968739_1 Drug resistance transporter Bcr CflA subfamily K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008208 402.0
BYD3_k127_4968739_2 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 330.0
BYD3_k127_4968739_3 Protein of unknown function (DUF2889) - - - 0.00000000006405 64.0
BYD3_k127_5013410_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 4.778e-249 771.0
BYD3_k127_5013410_1 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 349.0
BYD3_k127_5013410_2 CRS1_YhbY K07574 - - 0.000000000000000000000000000000000000000000000000000000000000008358 217.0
BYD3_k127_502343_0 RNA binding S1 domain protein K06959 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 565.0
BYD3_k127_502343_1 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007988 334.0
BYD3_k127_502343_2 PFAM ATP-binding region, ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002603 279.0
BYD3_k127_502343_3 - - - - 0.0000000004193 64.0
BYD3_k127_5026093_0 Transcriptional regulator, LysR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007622 400.0
BYD3_k127_5026093_1 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000002287 196.0
BYD3_k127_5026093_2 PFAM acyl-CoA dehydrogenase domain protein K00252 - 1.3.8.6 0.0000000000000000000000003546 119.0
BYD3_k127_5027236_0 Alginate lyase - - - 9.614e-298 934.0
BYD3_k127_5027236_1 Transcriptional regulator, LuxR family - - - 0.00000000000000002863 85.0
BYD3_k127_5027236_2 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000002612 64.0
BYD3_k127_503309_0 peptidase S45, penicillin amidase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 519.0
BYD3_k127_503309_1 AAA domain, putative AbiEii toxin, Type IV TA system K10017,K10025 - 3.6.3.21 0.0000000000000000000000000000000004018 131.0
BYD3_k127_503309_2 EF-hand, calcium binding motif - - - 0.0000000000000862 81.0
BYD3_k127_5048047_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 436.0
BYD3_k127_5048047_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000431 432.0
BYD3_k127_5048047_2 Bacterial regulatory proteins, luxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003109 323.0
BYD3_k127_5048047_3 Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000000003261 183.0
BYD3_k127_5060010_0 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K04090 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 454.0
BYD3_k127_5060010_1 PFAM regulatory protein AsnC Lrp family K03719 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001696 265.0
BYD3_k127_5060010_2 Chaperone - - - 0.0000000000000000000000000000000000000000000000000000000000001883 221.0
BYD3_k127_5060010_3 - - - - 0.000000000000000000000000000000000002888 147.0
BYD3_k127_5060010_4 - - - - 0.000000000000000000000002423 111.0
BYD3_k127_5060010_5 - - - - 0.0000000000000000000001326 106.0
BYD3_k127_506542_0 Extracellular liganD-binding receptor K01999 - - 2.122e-197 624.0
BYD3_k127_506542_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 2.442e-194 621.0
BYD3_k127_506542_2 Transcriptional regulator, LysR family K13634 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 507.0
BYD3_k127_506542_3 PFAM permease YjgP YjgQ family protein K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 507.0
BYD3_k127_506542_4 PFAM permease YjgP YjgQ family protein K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 415.0
BYD3_k127_506542_5 cobalamin (vitamin B12) biosynthesis CbiX K03795 - 4.99.1.3 0.00000000000000000000000000000000000008605 147.0
BYD3_k127_506542_6 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.00000000000000000000000000000005596 131.0
BYD3_k127_507482_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein K05898 - 1.3.99.4 2.365e-273 850.0
BYD3_k127_507482_1 Tripartite tricarboxylate transporter TctA family K07793 - - 6.239e-253 792.0
BYD3_k127_507482_2 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 504.0
BYD3_k127_507482_3 PFAM oxidoreductase domain protein K19181 - 1.1.1.292 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008578 440.0
BYD3_k127_507482_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 410.0
BYD3_k127_507482_5 Shikimate dehydrogenase substrate binding domain K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 385.0
BYD3_k127_507482_6 Tripartite tricarboxylate transporter TctB family K07794 - - 0.00000000000000000000000000000004969 131.0
BYD3_k127_5083652_1 D-alanyl-D-alanine carboxypeptidase K17733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005003 244.0
BYD3_k127_5084311_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 496.0
BYD3_k127_5084311_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008319 400.0
BYD3_k127_5084311_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005846 329.0
BYD3_k127_5084311_3 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000000000000000000000000000000000000000000001866 229.0
BYD3_k127_5092073_0 Pfam Sulfatase K01133 - 3.1.6.6 1.23e-197 621.0
BYD3_k127_5092073_1 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 403.0
BYD3_k127_5092073_2 TraB family K09973 - - 0.00000000000000000000000000000000000000000000000000000000000000002208 235.0
BYD3_k127_5092073_3 Hemerythrin-like metal-binding protein K07216 - - 0.000000000000000000000000000000000000000000000000000000000000002207 222.0
BYD3_k127_5092073_4 ParD-like antitoxin of type II bacterial toxin-antitoxin system - - - 0.00000000000002515 76.0
BYD3_k127_5110332_0 Benzoate-CoA ligase family K04110 - 6.2.1.25 3.548e-248 772.0
BYD3_k127_5110332_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009482 391.0
BYD3_k127_5110332_2 Receptor family ligand binding region - - - 0.00000000000000000000000000000000000000000000000000000000000000009967 244.0
BYD3_k127_5111788_0 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 1.804e-216 675.0
BYD3_k127_5111788_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 555.0
BYD3_k127_5111788_2 - - - - 0.000000000000000000000000000000003837 142.0
BYD3_k127_5111788_3 PFAM NifT FixU family protein K02593 - - 0.0000000000000000000000000000002503 123.0
BYD3_k127_5111788_4 SIR2-like domain - - - 0.00000000000000000000000000005864 116.0
BYD3_k127_5112162_0 Protein of unknown function (DUF1631) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 608.0
BYD3_k127_5112162_1 helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000000002315 82.0
BYD3_k127_5127070_0 ATP-binding region, ATPase domain protein K02487,K06596 - - 0.0 2009.0
BYD3_k127_5127070_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 9.771e-313 961.0
BYD3_k127_5127070_10 Flavinator of succinate dehydrogenase K09159 - - 0.000005329 52.0
BYD3_k127_5127070_2 PFAM chemotaxis sensory transducer K02660 - - 9.035e-311 969.0
BYD3_k127_5127070_3 PFAM aminotransferase class-III K01845 - 5.4.3.8 4.317e-241 749.0
BYD3_k127_5127070_4 PFAM Phosphomethylpyrimidine kinase type-1 K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 406.0
BYD3_k127_5127070_5 response regulator, receiver K02657 - - 0.00000000000000000000000000000000000000000000000000000000000000000004314 233.0
BYD3_k127_5127070_6 response regulator, receiver K02658 - - 0.00000000000000000000000000000000000000000000000000000000000007178 219.0
BYD3_k127_5127070_7 PFAM CheW domain protein K02659 - - 0.000000000000000000000000000000000000000000000001334 181.0
BYD3_k127_5127070_8 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.000000000000000000000000000000001713 129.0
BYD3_k127_5127070_9 PFAM DNA photolyase, FAD-binding K01669 - 4.1.99.3 0.0000000005209 61.0
BYD3_k127_5150199_0 Major facilitator superfamily K03446,K18926 - - 7.43e-218 686.0
BYD3_k127_5150199_1 PFAM Glutamine amidotransferase, class-II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 444.0
BYD3_k127_5150199_2 PFAM response regulator receiver K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 389.0
BYD3_k127_5150199_3 Small Multidrug Resistance protein K03297 - - 0.0000000000000000000000000000000000003716 152.0
BYD3_k127_5150199_4 - - - - 0.0000000000000000000000000000008392 127.0
BYD3_k127_516038_0 PFAM aminotransferase, class I and II - - - 6.717e-206 647.0
BYD3_k127_516038_1 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009235 279.0
BYD3_k127_5161604_0 Mota tolq exbb proton channel K03561,K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 366.0
BYD3_k127_5161604_1 PFAM thioesterase superfamily protein K07107 - - 0.000000000000000000000000000000000000000000000000000000005332 201.0
BYD3_k127_5161604_2 PFAM Tol-Pal system TolA K03646 - - 0.0000000000000000000000000000000000000000000000000000008302 204.0
BYD3_k127_5161604_3 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000000000000000002816 139.0
BYD3_k127_5161604_4 PAS fold - - - 0.00000001042 58.0
BYD3_k127_5174670_0 Peptidase family M41 - - - 1.035e-292 921.0
BYD3_k127_5174670_1 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 9.112e-249 772.0
BYD3_k127_5174670_2 TIGRFAM ATP-dependent helicase HrpA K03578 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 366.0
BYD3_k127_5186755_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 7.021e-242 774.0
BYD3_k127_5186755_1 ribonuclease, Rne Rng family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006989 510.0
BYD3_k127_5186755_2 OmpA-like transmembrane domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009548 300.0
BYD3_k127_5186755_3 Involved in the TonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000008216 227.0
BYD3_k127_5186755_4 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000001097 99.0
BYD3_k127_5195250_0 PFAM Xanthine uracil vitamin C permease K02824 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 471.0
BYD3_k127_5195250_1 - K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007032 298.0
BYD3_k127_5195250_2 PFAM thioesterase superfamily protein K19222 - 3.1.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000004607 246.0
BYD3_k127_5195250_3 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000426 146.0
BYD3_k127_5213857_0 Elements of external origin K07494 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 359.0
BYD3_k127_5213857_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004925 284.0
BYD3_k127_5213857_2 TIGRFAM Undecaprenyl-phosphate galactose phosphotransferase, WbaP K00996 - 2.7.8.6 0.0000000000000000000000000000000000000000000000000000000000009582 227.0
BYD3_k127_5243719_0 PFAM Dual specificity protein phosphatase K14165 - 3.1.3.16,3.1.3.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 356.0
BYD3_k127_5243719_1 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 306.0
BYD3_k127_5243719_2 PFAM regulatory protein AsnC Lrp family K03719 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001672 270.0
BYD3_k127_5243719_3 twitching motility protein K02669,K12203 - - 0.000000000000000000000000000000000000000000000000000000000001405 213.0
BYD3_k127_5243719_4 transcription factor binding - - - 0.000000000000000000000000000000000000000000000000000001047 195.0
BYD3_k127_5243719_5 Protein of unknown function (DUF3617) - - - 0.000000000000000000000000000000000000000000000002177 184.0
BYD3_k127_5243719_6 Oxidizes proline to glutamate for use as a carbon and nitrogen source K00249,K00294,K13821 - 1.2.1.88,1.3.8.7,1.5.5.2 0.00000000000000000000000000000000000000000000006793 171.0
BYD3_k127_5258411_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1656.0
BYD3_k127_5258411_1 Na Pi-cotransporter II-related protein K03324 - - 5.072e-255 798.0
BYD3_k127_5258411_2 PFAM aminotransferase class V - - - 2.466e-204 648.0
BYD3_k127_5258411_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002892 292.0
BYD3_k127_5258411_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000004139 224.0
BYD3_k127_5258411_5 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000001767 136.0
BYD3_k127_5258411_6 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000001106 110.0
BYD3_k127_5258411_7 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000008019 68.0
BYD3_k127_5269906_0 PFAM extracellular solute-binding protein family 1 K17315 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 612.0
BYD3_k127_5269906_1 TIGRFAM 3-oxoacid CoA-transferase, A subunit K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002134 430.0
BYD3_k127_5269906_2 3-oxoacid CoA-transferase, B subunit K01029 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006189 400.0
BYD3_k127_5269906_3 PFAM regulatory protein LuxR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007171 316.0
BYD3_k127_5269906_4 Uncharacterized protein family UPF0016 - - - 0.000000000001341 68.0
BYD3_k127_529111_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K12256 - 2.6.1.113 3.328e-265 822.0
BYD3_k127_529111_1 Required for the activity of the bacterial periplasmic transport system of putrescine K11073 - - 2.519e-207 651.0
BYD3_k127_529111_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 - - 4.574e-198 623.0
BYD3_k127_529111_3 PFAM binding-protein-dependent transport systems inner membrane component K11075 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 529.0
BYD3_k127_529111_4 glutamine synthetase K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000001618 179.0
BYD3_k127_5307977_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1232.0
BYD3_k127_5307977_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 400.0
BYD3_k127_5307977_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000725 342.0
BYD3_k127_5307977_3 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003656 275.0
BYD3_k127_5307977_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009154 258.0
BYD3_k127_5307977_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000000000000000006536 211.0
BYD3_k127_5307977_6 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000000000000000000000000000000000000000000456 195.0
BYD3_k127_5307977_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000003501 145.0
BYD3_k127_5331139_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 4.786e-203 637.0
BYD3_k127_5331139_1 PFAM GTP-binding signal recognition particle SRP54 G- domain K02404 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 527.0
BYD3_k127_5331139_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007041 373.0
BYD3_k127_5331139_3 - - - - 0.000000000002096 78.0
BYD3_k127_5354684_0 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 1.048e-280 874.0
BYD3_k127_5354684_1 Belongs to the thiolase family K00626 - 2.3.1.9 2.413e-224 698.0
BYD3_k127_5354684_10 helix_turn_helix, Lux Regulon - - - 0.0001843 46.0
BYD3_k127_5354684_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 482.0
BYD3_k127_5354684_3 TIGRFAM maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000513 339.0
BYD3_k127_5354684_4 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 323.0
BYD3_k127_5354684_5 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006938 298.0
BYD3_k127_5354684_6 YadA-like membrane anchor domain K21449 - - 0.000000000000000000000003733 117.0
BYD3_k127_5354684_7 Phosphopantetheine attachment site - - - 0.000000000000000000009675 93.0
BYD3_k127_5354684_8 - - - - 0.0000000000348 77.0
BYD3_k127_5367706_0 Alcohol dehydrogenase GroES-like domain K00148 - 1.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005359 455.0
BYD3_k127_5367706_1 Transglutaminase/protease-like homologues - - - 0.000000000001081 72.0
BYD3_k127_5389600_0 aminotransferase class I and II - - - 1.927e-247 786.0
BYD3_k127_5389600_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 522.0
BYD3_k127_5389600_2 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 351.0
BYD3_k127_5389600_3 Histidine kinase K20974 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007107 312.0
BYD3_k127_5389600_4 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000002257 132.0
BYD3_k127_5403360_0 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 5.061e-235 730.0
BYD3_k127_5403360_1 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000000000000000000000000000000009545 227.0
BYD3_k127_5406651_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.059e-301 937.0
BYD3_k127_5406651_1 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000001138 260.0
BYD3_k127_5407648_0 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007864 547.0
BYD3_k127_5407648_1 Transcriptional regulator, AraC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 491.0
BYD3_k127_5407648_2 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.000000000000000000000000000000000003816 147.0
BYD3_k127_5407648_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000005972 137.0
BYD3_k127_5428764_0 Major Facilitator Superfamily K08167 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 561.0
BYD3_k127_5428764_1 tRNA-splicing ligase RtcB K18148 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 315.0
BYD3_k127_5428764_2 ammonium transporter K03320,K06580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 299.0
BYD3_k127_5428764_3 chain release factor K02839 - - 0.0000000000000000000000000000000000000000000000000000000000000008423 235.0
BYD3_k127_5428764_4 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000003643 198.0
BYD3_k127_5502424_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 545.0
BYD3_k127_5502424_1 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 533.0
BYD3_k127_5502424_2 cytochrome oxidase assembly K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 484.0
BYD3_k127_5502424_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 423.0
BYD3_k127_5502424_4 PFAM Cytochrome c oxidase assembly protein CtaG Cox11 K02258 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003049 332.0
BYD3_k127_5502424_5 signal sequence binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 292.0
BYD3_k127_5502424_6 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000117 274.0
BYD3_k127_5502424_7 Protein of unknown function (DUF2909) - - - 0.00000000000000001102 92.0
BYD3_k127_5502424_8 Protein of unknown function (DUF2970) - - - 0.000000000000001553 85.0
BYD3_k127_5503841_0 PFAM NUDIX hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 325.0
BYD3_k127_5503841_1 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 313.0
BYD3_k127_5503841_2 4fe-4S ferredoxin, iron-sulfur binding domain protein K02572 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0044424,GO:0044464,GO:0050896 - 0.0000000000000000000001574 106.0
BYD3_k127_5503841_3 Domain of unknown function (DUF4143) K07133 - - 0.00001098 48.0
BYD3_k127_551106_0 Cysteine-rich domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 538.0
BYD3_k127_551106_1 Protein of unknown function (DUF3501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 343.0
BYD3_k127_551106_2 Belongs to the UPF0246 family K09861 - - 0.0000000000000000000000000003515 115.0
BYD3_k127_5513081_0 Belongs to the RuBisCO large chain family K01601 - 4.1.1.39 8.176e-298 915.0
BYD3_k127_5513081_1 CBS domain containing protein K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006098 574.0
BYD3_k127_5513081_2 Transcriptional regulator K21703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 476.0
BYD3_k127_5513081_3 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 390.0
BYD3_k127_5513081_4 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.000000000000000000000000000000000000000000000000000000000000006236 218.0
BYD3_k127_5513081_5 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.0000000000006812 72.0
BYD3_k127_5525465_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004981 609.0
BYD3_k127_5525465_1 Predicted metal-dependent hydrolase K07044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 413.0
BYD3_k127_5525465_2 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000001595 179.0
BYD3_k127_5525465_3 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000000000000000000000008474 145.0
BYD3_k127_5525465_4 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000002363 139.0
BYD3_k127_5525465_5 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000007858 91.0
BYD3_k127_5526645_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02504,K02652,K12276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 610.0
BYD3_k127_5526645_1 type II and III secretion system protein K02453,K12282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 413.0
BYD3_k127_5526645_2 General secretion pathway protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 367.0
BYD3_k127_5526645_3 SMART AAA ATPase K02450 - - 0.000000000000000000000000000000000000000000000000000000000000000002387 246.0
BYD3_k127_5526645_4 - - - - 0.0000000000000000000001696 115.0
BYD3_k127_5526645_6 general secretion pathway protein - - - 0.000000005198 66.0
BYD3_k127_5530478_0 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 607.0
BYD3_k127_5530478_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 584.0
BYD3_k127_5530478_2 Belongs to the IlvD Edd family K22186 - 4.2.1.82 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 331.0
BYD3_k127_5530478_3 FCD K05799 - - 0.0000000000000000000000000000000000000002535 151.0
BYD3_k127_5534875_0 glyoxalase bleomycin resistance protein dioxygenase K07032 - - 0.0000000000000000000000000000000000000000000000000000000000000002377 231.0
BYD3_k127_5534875_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.000000000000000000000000000000000000000000000000000000000000009809 222.0
BYD3_k127_5534875_2 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000000000000006269 216.0
BYD3_k127_5534875_3 glyoxalase III activity - - - 0.00000000000000000000000000000000000000000000003801 175.0
BYD3_k127_5534875_4 RNA polymerase sigma factor - - - 0.000000000000000000007243 93.0
BYD3_k127_5540945_0 Binding-protein-dependent transport system inner membrane component K12369 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 528.0
BYD3_k127_5540945_1 Belongs to the ABC transporter superfamily K12371 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 472.0
BYD3_k127_5540945_2 N-terminal TM domain of oligopeptide transport permease C K12370 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000084 421.0
BYD3_k127_5543069_0 Amino acid permease K03294,K16238 - - 1.557e-215 697.0
BYD3_k127_5543069_1 Transcriptional regulator K04033 - - 0.0000000000000000000000000000000000000000000000000000000008699 216.0
BYD3_k127_5559922_0 Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system K01990,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003322 531.0
BYD3_k127_5559922_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 417.0
BYD3_k127_5559922_2 Transport permease protein K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 412.0
BYD3_k127_5559922_3 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000386 415.0
BYD3_k127_5562891_0 Phosphate acetyl butaryl transferase K00029 - 1.1.1.40 0.0 1337.0
BYD3_k127_5562891_1 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 1.948e-264 843.0
BYD3_k127_5562891_10 PFAM Barstar (barnase inhibitor) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 297.0
BYD3_k127_5562891_11 Iron-storage protein K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 288.0
BYD3_k127_5562891_12 guanine-specific ribonuclease N1 and T1 K01167 - 3.1.27.3 0.0000000000000000000000000000000000000000001909 164.0
BYD3_k127_5562891_13 PFAM BFD domain protein 2Fe-2S -binding domain protein K02192 - - 0.00000000000000000000000009036 115.0
BYD3_k127_5562891_14 Uncharacterized protein conserved in bacteria (DUF2325) - - - 0.00000000000001774 80.0
BYD3_k127_5562891_15 - - - - 0.00000000000004866 77.0
BYD3_k127_5562891_2 Peptidase M20 - - - 1.886e-228 709.0
BYD3_k127_5562891_3 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 591.0
BYD3_k127_5562891_4 PFAM Aminoglycoside phosphotransferase K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004968 550.0
BYD3_k127_5562891_5 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 477.0
BYD3_k127_5562891_6 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 451.0
BYD3_k127_5562891_7 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004667 415.0
BYD3_k127_5562891_8 Alpha beta hydrolase K01048 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 350.0
BYD3_k127_5562891_9 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 315.0
BYD3_k127_5569405_0 membrane - - - 4.026e-261 823.0
BYD3_k127_5569405_1 Class II aldolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 434.0
BYD3_k127_5569405_2 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 309.0
BYD3_k127_5569405_3 Cytochrome B561 K12262 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006657 273.0
BYD3_k127_5569405_4 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008467 258.0
BYD3_k127_5569405_5 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007385 249.0
BYD3_k127_5569405_6 Fe-S-cluster oxidoreductase K06940 - - 0.0000000000000000000000000000000000000005416 150.0
BYD3_k127_5569405_7 Protein of unknown function (DUF2892) - - - 0.000000000000000000007216 100.0
BYD3_k127_5589837_0 Belongs to the IlvD Edd family K13875 - 4.2.1.25 0.0 1056.0
BYD3_k127_5589837_1 Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and or methyl galactoside import. Responsible for energy coupling to the transport system K02056,K10441 - 3.6.3.17 3.045e-261 809.0
BYD3_k127_5589837_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 582.0
BYD3_k127_5589837_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 560.0
BYD3_k127_5629829_0 Ammonia monooxygenase K07120 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 445.0
BYD3_k127_5629829_1 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 357.0
BYD3_k127_5629829_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000001578 212.0
BYD3_k127_5629829_3 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000000005312 193.0
BYD3_k127_5629829_4 Protein of unknown function (DUF3567) - - - 0.000000000000000000000000000000000006651 139.0
BYD3_k127_5636075_0 Proton-conducting membrane transporter K12141 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0031224,GO:0033554,GO:0044425,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - 6.518e-231 733.0
BYD3_k127_5636075_1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 374.0
BYD3_k127_5636075_2 - K12140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 307.0
BYD3_k127_5636075_3 NADH dehydrogenase - - - 0.0000000000000000000000000234 110.0
BYD3_k127_5643879_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 7.422e-289 891.0
BYD3_k127_5643879_1 peptidase M48, Ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006178 389.0
BYD3_k127_5643879_2 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001003 256.0
BYD3_k127_5643879_3 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000001481 112.0
BYD3_k127_5663995_0 PspA/IM30 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002382 283.0
BYD3_k127_5663995_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000002366 239.0
BYD3_k127_5663995_2 Uncharacterized protein conserved in bacteria (DUF2170) K09980 - - 0.000000000000000000000000000000000000000000000000000000000004466 210.0
BYD3_k127_5663995_3 - - - - 0.0000000000000000000000000000000000004496 153.0
BYD3_k127_5663995_4 SPFH Band 7 PHB domain protein K07192 - - 0.00000000004198 72.0
BYD3_k127_5680699_0 Shikimate dehydrogenase substrate binding domain protein K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 436.0
BYD3_k127_5680699_1 Drug metabolite transporter - - - 0.0000000000000000000000000000000001857 136.0
BYD3_k127_5685603_0 TonB-dependent Receptor Plug K02014 - - 3.859e-208 670.0
BYD3_k127_5685603_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007005 602.0
BYD3_k127_5685603_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 373.0
BYD3_k127_5685603_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006771 284.0
BYD3_k127_5685603_4 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000117 194.0
BYD3_k127_5685603_5 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000004328 152.0
BYD3_k127_5685603_6 Domain of unknown function (DUF4154) - - - 0.00000000000000000000000000000506 128.0
BYD3_k127_5715461_0 amino acid K01999 - - 3.203e-218 683.0
BYD3_k127_5715461_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000002551 85.0
BYD3_k127_5719127_0 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 2.091e-211 669.0
BYD3_k127_5719127_1 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 469.0
BYD3_k127_5719127_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 347.0
BYD3_k127_5719127_3 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001066 278.0
BYD3_k127_5719127_4 PFAM TatD-related deoxyribonuclease K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000003232 240.0
BYD3_k127_5719127_5 response to heat K03668,K09914 - - 0.00000000000002289 84.0
BYD3_k127_5719846_0 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 615.0
BYD3_k127_5719846_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 450.0
BYD3_k127_5719846_2 Mo-molybdopterin cofactor biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007963 400.0
BYD3_k127_5719846_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005426 395.0
BYD3_k127_5719846_4 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008349 255.0
BYD3_k127_5719846_5 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001371 241.0
BYD3_k127_5719846_6 Catalyzes the synthesis of activated sulfate K00860 - 2.7.1.25 0.0000000000000000000000000000000000000000000000000000009467 205.0
BYD3_k127_5719846_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000001594 179.0
BYD3_k127_5748595_0 PFAM SpoVR family protein K06415 - - 7.064e-282 884.0
BYD3_k127_5748595_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 1.635e-243 756.0
BYD3_k127_5748595_2 Belongs to the UPF0229 family K09786 - - 4.474e-211 663.0
BYD3_k127_5748595_3 Methylmalonyl-CoA mutase large subunit K01847 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007447 420.0
BYD3_k127_5748595_4 regulatory protein GntR HTH - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003741 339.0
BYD3_k127_5748595_5 Dyp-type peroxidase family K07223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 331.0
BYD3_k127_5749747_0 PAAR repeat-containing protein - - - 0.00000000000000000000000000000007401 141.0
BYD3_k127_5749747_1 PFAM Acetyltransferase (GNAT) family K03823 - 2.3.1.183 0.0000000000000000000000000000003137 130.0
BYD3_k127_5749747_2 PFAM H transporting two-sector ATPase alpha beta subunit central region K03224 - 3.6.3.14 0.000000000000000000000000007609 113.0
BYD3_k127_5749747_3 FlhB HrpN YscU SpaS Family K02401 - - 0.00002868 47.0
BYD3_k127_5778279_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006866 309.0
BYD3_k127_5778279_1 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000000000000000000000000000000007094 208.0
BYD3_k127_5778279_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000003692 182.0
BYD3_k127_5783737_0 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 4.157e-207 655.0
BYD3_k127_5783737_1 Sodium/hydrogen exchanger family - - - 6.972e-198 631.0
BYD3_k127_5783737_2 ubiE/COQ5 methyltransferase family K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 406.0
BYD3_k127_5783737_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 401.0
BYD3_k127_5783737_4 Beta-ketoacyl synthase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008176 406.0
BYD3_k127_5783737_5 dehydratase - - - 0.000000000000000000000000000000000000000000000000002217 193.0
BYD3_k127_5783737_6 - - - - 0.0000000000000000000000000000000000000000000000004238 182.0
BYD3_k127_5783737_7 Glycosyltransferase like family 2 - - - 0.00000000000000000000000008892 106.0
BYD3_k127_5783737_8 Polysaccharide deacetylase - - - 0.00000000000000000000001711 100.0
BYD3_k127_5788563_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.001e-252 786.0
BYD3_k127_5788563_1 Type 12 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000003201 188.0
BYD3_k127_5788563_2 - - - - 0.00000000000000000000000000000001463 132.0
BYD3_k127_5788563_3 Signal transduction histidine kinase K07711 - 2.7.13.3 0.00005664 49.0
BYD3_k127_5792922_0 PrpF protein K16514 - 5.3.2.8 7.094e-246 764.0
BYD3_k127_5792922_1 PFAM fumarate lyase K01857 - 5.5.1.2 9.773e-223 692.0
BYD3_k127_5792922_2 Gram-negative porin - - - 0.0000000000000000000000000000000000000000000000000000000000000186 228.0
BYD3_k127_5837527_0 Belongs to the GMC oxidoreductase family - - - 1.586e-229 722.0
BYD3_k127_5837527_1 Aldehyde dehydrogenase family K00128 - 1.2.1.3 6.738e-226 707.0
BYD3_k127_5837527_2 Periplasmic binding protein K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 342.0
BYD3_k127_5837527_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003945 255.0
BYD3_k127_5837527_4 Branched-chain amino acid transport system / permease component - - - 0.00000000000005721 83.0
BYD3_k127_5837527_5 AraC-binding-like domain - - - 0.0000000000114 70.0
BYD3_k127_5844748_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 509.0
BYD3_k127_5844748_1 Periplasmic binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004201 500.0
BYD3_k127_5844748_2 Periplasmic binding protein K02016 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 498.0
BYD3_k127_5844748_3 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 363.0
BYD3_k127_5844748_4 pfkB family carbohydrate kinase K16370 - 2.7.1.11 0.00000000000000000000000000000000000000001881 168.0
BYD3_k127_5849295_0 benzoyl-CoA oxygenase K15512 - 1.14.13.208 4.864e-277 856.0
BYD3_k127_5849295_1 twitching motility protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 566.0
BYD3_k127_5849295_2 PFAM FAD linked oxidase domain protein K00102,K03777 - 1.1.2.4,1.1.5.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004578 532.0
BYD3_k127_5849295_3 PFAM cobalamin adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 312.0
BYD3_k127_5849295_4 - - - - 0.00000000000000000000004336 103.0
BYD3_k127_5849295_5 EF hand - - - 0.0000000006938 64.0
BYD3_k127_5854360_0 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 289.0
BYD3_k127_5854360_1 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.0000000000000000000000000000000000001034 154.0
BYD3_k127_5854360_2 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000001642 147.0
BYD3_k127_5879301_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17722 - 1.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009012 368.0
BYD3_k127_5879301_1 Transcriptional regulator K09017 - - 0.0000000000000000000000000000000000000000000000000000001006 198.0
BYD3_k127_5887125_0 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 409.0
BYD3_k127_5887125_1 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.0000000000000000000000000000000000000000000000000000000001218 207.0
BYD3_k127_5887125_2 flagellar protein FliS K02422 - - 0.00000000000000000000000000000000000000002544 158.0
BYD3_k127_5887125_3 Flagellar protein FliT K02423 - - 0.00000000000000000000000000111 118.0
BYD3_k127_5888304_0 hydrolase of the alpha K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002246 252.0
BYD3_k127_5888304_1 PFAM LemA family protein K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000004645 231.0
BYD3_k127_5888304_2 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000001158 205.0
BYD3_k127_5891851_0 peptidase S45, penicillin amidase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 585.0
BYD3_k127_5891851_1 PFAM peptidase U61, LD-carboxypeptidase A K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 369.0
BYD3_k127_5891851_2 Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 348.0
BYD3_k127_5891851_3 - - - - 0.00000000000182 72.0
BYD3_k127_5903005_0 PFAM extracellular solute-binding protein family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005954 480.0
BYD3_k127_5903005_1 PFAM Orn DAP Arg decarboxylase 2 K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008223 430.0
BYD3_k127_5903005_2 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000796 312.0
BYD3_k127_5903005_3 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000002105 185.0
BYD3_k127_591481_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 9.799e-265 822.0
BYD3_k127_591481_1 PFAM AAA ATPase central domain protein K07478 - - 1.818e-240 754.0
BYD3_k127_591481_10 PFAM Hemerythrin HHE cation binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000142 212.0
BYD3_k127_591481_11 membrane - - - 0.000000000000000000000000000000000000000000000000006549 186.0
BYD3_k127_591481_12 Mg(2 ) transporter K07507 - - 0.0000000000000000000000000000000000000000000003104 172.0
BYD3_k127_591481_13 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000003428 168.0
BYD3_k127_591481_14 7TMR-DISM extracellular 2 K20971 - - 0.00000000000000000000000000000000000000000001665 183.0
BYD3_k127_591481_15 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.0000000000000000000000000000000000000000001628 174.0
BYD3_k127_591481_16 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000000000001638 146.0
BYD3_k127_591481_17 BON domain K04065 - - 0.00000000000000000000000000000000007634 136.0
BYD3_k127_591481_18 - - - - 0.000000000000000000000000000000003882 129.0
BYD3_k127_591481_2 Response regulator receiver - - - 1.158e-209 664.0
BYD3_k127_591481_20 Histidine kinase K02030 - - 0.000000000000006194 77.0
BYD3_k127_591481_21 - - - - 0.0000000003906 71.0
BYD3_k127_591481_3 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 531.0
BYD3_k127_591481_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 482.0
BYD3_k127_591481_5 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 476.0
BYD3_k127_591481_6 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 456.0
BYD3_k127_591481_7 PFAM ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 397.0
BYD3_k127_591481_8 CRP FNR family - - - 0.000000000000000000000000000000000000000000000000000000000000000008195 235.0
BYD3_k127_591481_9 Domain of unknown function (DUF2383) - - - 0.0000000000000000000000000000000000000000000000000000000007969 206.0
BYD3_k127_5915532_0 negative regulation of translational initiation - - - 0.000000000000000000000000000000000000000000000000000000005622 202.0
BYD3_k127_5915532_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000001509 141.0
BYD3_k127_5915532_2 Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity K14540 - - 0.000000000000000000000000000000000004723 147.0
BYD3_k127_5915532_3 Ferredoxin - - - 0.000000000000000000000000002791 115.0
BYD3_k127_5922891_0 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007996 487.0
BYD3_k127_5922891_1 UTRA K03710 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 386.0
BYD3_k127_5922891_2 EamA-like transporter family K11939 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 370.0
BYD3_k127_5922891_3 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 366.0
BYD3_k127_5922891_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009073 351.0
BYD3_k127_5922891_5 DSBA oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000001293 225.0
BYD3_k127_5922891_6 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000002269 174.0
BYD3_k127_5922891_7 sequence-specific DNA binding K07726 - - 0.0000000000000000000000000000000000001155 142.0
BYD3_k127_5933620_0 Domain of unknown function (DUF4010) - - - 6.586e-223 696.0
BYD3_k127_5933620_1 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 568.0
BYD3_k127_5933620_2 PFAM multicopper oxidase type K04753,K08100,K14588 - 1.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007202 326.0
BYD3_k127_5933620_3 - - - - 0.000000000000000000000000000000000000000000000000000000000002327 214.0
BYD3_k127_5933620_4 Protein of unknown function (DUF2789) - - - 0.00000000000000000000000000000000000000183 148.0
BYD3_k127_5933620_5 Cyclic nucleotide-binding domain - - - 0.000000000000000000000000000000000004803 144.0
BYD3_k127_5952039_0 PFAM ABC transporter related K12541 - - 1.344e-242 791.0
BYD3_k127_5952039_1 PFAM sigma-54 factor interaction domain-containing protein - - - 2.485e-203 643.0
BYD3_k127_5952039_2 PFAM Mur ligase middle domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004186 620.0
BYD3_k127_5952039_3 TIGRFAM type I secretion membrane fusion protein, HlyD family K12542,K16300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 554.0
BYD3_k127_5952039_4 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 393.0
BYD3_k127_5952039_5 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 309.0
BYD3_k127_5952039_6 Belongs to the ompA family K03640 - - 0.00000000000000000000000005958 108.0
BYD3_k127_5952039_7 PFAM TadE family protein - - - 0.00000000000000000000000006106 112.0
BYD3_k127_5954307_0 PFAM Type II secretion system protein E K02670 - - 2.764e-213 666.0
BYD3_k127_5954307_1 PFAM Type II secretion system protein E K02669,K12203 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 387.0
BYD3_k127_5982442_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 2.203e-206 651.0
BYD3_k127_5982442_1 PFAM FAD dependent oxidoreductase K06955 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004618 475.0
BYD3_k127_5982442_10 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000667 280.0
BYD3_k127_5982442_11 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000000000000000000001917 211.0
BYD3_k127_5982442_12 Phosphopantetheine attachment site K02078 - - 0.0000000000000000000000000000004559 124.0
BYD3_k127_5982442_13 Phosphopantetheine attachment site K02078 - - 0.00000000000000000002013 95.0
BYD3_k127_5982442_2 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 421.0
BYD3_k127_5982442_3 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 411.0
BYD3_k127_5982442_4 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 387.0
BYD3_k127_5982442_5 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003205 374.0
BYD3_k127_5982442_6 PFAM Pseudouridine synthase K06177 - 5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 373.0
BYD3_k127_5982442_7 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 362.0
BYD3_k127_5982442_8 Protein of unknown function, DUF599 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 354.0
BYD3_k127_5982442_9 Flavodoxin domain K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009431 312.0
BYD3_k127_6007082_0 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005808 589.0
BYD3_k127_6007082_1 Glutathione S-transferase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008969 383.0
BYD3_k127_6007082_2 NIPSNAP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007779 283.0
BYD3_k127_6007082_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000008359 217.0
BYD3_k127_6007082_4 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000005266 191.0
BYD3_k127_6007082_5 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000003479 189.0
BYD3_k127_6007082_6 Cupin domain - - - 0.000000000000000000000000007213 114.0
BYD3_k127_6049632_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 3.188e-249 779.0
BYD3_k127_6049632_1 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 236.0
BYD3_k127_6049632_2 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000000000000004975 212.0
BYD3_k127_6049632_3 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000000000000000000000000005011 166.0
BYD3_k127_6067131_0 GrpB protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003082 262.0
BYD3_k127_6067131_1 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000167 237.0
BYD3_k127_6067131_2 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000003923 228.0
BYD3_k127_6067131_3 Putative thioesterase (yiiD_Cterm) - - - 0.00000000000000000000000000002967 125.0
BYD3_k127_6075914_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 6.942e-284 883.0
BYD3_k127_6075914_1 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 366.0
BYD3_k127_6075914_2 - - - - 0.00000000000000000000000000000000000000000000000000000007785 203.0
BYD3_k127_6100765_0 HsdM N-terminal domain K03427 - 2.1.1.72 1.779e-209 659.0
BYD3_k127_6100765_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 404.0
BYD3_k127_6125345_0 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003404 463.0
BYD3_k127_6125345_1 Transcriptional regulator K03717 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 397.0
BYD3_k127_6125345_2 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 370.0
BYD3_k127_6125345_3 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 307.0
BYD3_k127_6125345_4 transcriptional regulators containing the CopG Arc MetJ DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000003622 192.0
BYD3_k127_6125345_5 Domain of unknown function (DUF1508) K09946 - - 0.000000000000000000000000000000000000000003389 159.0
BYD3_k127_6125345_6 Protein of unknown function (DUF3445) K22342 - 1.14.13.238 0.000000000000000000000000000000001694 141.0
BYD3_k127_6125345_7 Esterase PHB depolymerase - - - 0.0000000001559 68.0
BYD3_k127_6125345_8 cytochrome K17230 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000003744 58.0
BYD3_k127_61317_0 Major facilitator superfamily K07552,K18552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006967 482.0
BYD3_k127_61317_1 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 424.0
BYD3_k127_61317_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007092 402.0
BYD3_k127_61317_3 Secretion protein K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009107 253.0
BYD3_k127_61317_4 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000006768 104.0
BYD3_k127_6149355_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 513.0
BYD3_k127_6149355_1 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 358.0
BYD3_k127_6149355_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 339.0
BYD3_k127_6176877_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 2.166e-260 805.0
BYD3_k127_6176877_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007357 586.0
BYD3_k127_6182015_0 FAD binding domain K20940 - 1.14.13.218 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005475 578.0
BYD3_k127_6182015_1 PFAM cyclase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 538.0
BYD3_k127_6182015_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 476.0
BYD3_k127_6182015_3 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005979 422.0
BYD3_k127_6182015_4 PFAM Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001718 222.0
BYD3_k127_6182015_5 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000001778 220.0
BYD3_k127_6182015_6 Rieske [2Fe-2S] domain - - - 0.000000000000000000000000000000000000704 155.0
BYD3_k127_6182020_0 Prolyl oligopeptidase family - - - 3.531e-196 615.0
BYD3_k127_6182020_1 universal stress protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003127 285.0
BYD3_k127_6216700_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 505.0
BYD3_k127_6216700_1 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 436.0
BYD3_k127_6216700_2 Short-chain dehydrogenase reductase sdr K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 410.0
BYD3_k127_6216700_3 PFAM Cyclic nucleotide-binding - - - 0.000000003151 59.0
BYD3_k127_6216700_4 PrpF protein - - - 0.00001274 51.0
BYD3_k127_62182_0 Bacterial protein of unknown function (DUF839) K07093 - - 1.307e-307 963.0
BYD3_k127_62182_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 345.0
BYD3_k127_62182_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001134 261.0
BYD3_k127_6236567_0 - K03220 - - 0.000000000000000000000000000000000000000000000000000000000001011 221.0
BYD3_k127_6236567_1 TIGRFAM type III secretion outer membrane pore, YscC HrcC family K03219,K22504 - - 0.00000000000000000000000000000000000000000000004134 175.0
BYD3_k127_6236567_2 TIGRFAM type III secretion apparatus lipoprotein, YscJ HrcJ family K03222 - - 0.00000000000000000000000000000000000000000000008498 172.0
BYD3_k127_6236567_4 type III secretion protein HrpB1 HrpK K18373 - - 0.00000000000000000000000006133 113.0
BYD3_k127_6246557_0 PFAM AMP-dependent synthetase and ligase K18661 - - 1.77e-253 795.0
BYD3_k127_6246557_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 327.0
BYD3_k127_6246557_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000003748 132.0
BYD3_k127_6246772_0 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005748 520.0
BYD3_k127_6246772_1 Two component transcriptional regulator K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004621 325.0
BYD3_k127_6246772_2 Male sterility protein - - - 0.000000000000000000000000000000005154 128.0
BYD3_k127_6255193_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0 1098.0
BYD3_k127_6266264_0 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000416 250.0
BYD3_k127_6266264_1 Belongs to the aldehyde dehydrogenase family K00141 - 1.2.1.28 0.00000000000000000000000000000000000000000000000000000001276 197.0
BYD3_k127_6266264_2 - - - - 0.00000000000000000000000000000000000003109 165.0
BYD3_k127_6266264_3 Flagellar basal body rod protein - - - 0.0004566 43.0
BYD3_k127_6273894_0 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 495.0
BYD3_k127_6273894_1 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 334.0
BYD3_k127_6273894_2 Winged helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003586 282.0
BYD3_k127_6273894_3 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000001658 231.0
BYD3_k127_6279192_0 DEAD_2 K10844 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 441.0
BYD3_k127_6279192_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000007417 229.0
BYD3_k127_6279696_0 May be involved in the transport of PQQ or its precursor to the periplasm K06136 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 495.0
BYD3_k127_6279696_1 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 - 1.3.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 440.0
BYD3_k127_6279696_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006936 353.0
BYD3_k127_6279696_3 PFAM alpha beta hydrolase fold K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 349.0
BYD3_k127_6279696_4 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue and excising these residues from the peptide K06135 - - 0.00004647 53.0
BYD3_k127_6288156_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1064.0
BYD3_k127_6336234_0 FAD dependent oxidoreductase K06954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 586.0
BYD3_k127_6336234_1 Protein of unknown function (DUF1365) K09701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 355.0
BYD3_k127_6336234_2 Cyclopropane-fatty-acyl-phospholipid synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000005203 252.0
BYD3_k127_6336234_3 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000000000000000000000000000003275 164.0
BYD3_k127_6338507_0 Glycosyl hydrolases family 2, sugar binding domain K01190 - 3.2.1.23 0.0 1154.0
BYD3_k127_6338507_1 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 490.0
BYD3_k127_6338507_2 probably responsible for the translocation of the substrate across the membrane K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 424.0
BYD3_k127_6338507_3 TOBE domain - - - 0.00000000000000000000000000002628 117.0
BYD3_k127_6338507_4 Bacterial extracellular solute-binding protein K10188 - - 0.00000000000003507 72.0
BYD3_k127_6340568_0 Cobalamin synthesis protein P47K - - - 3.511e-194 610.0
BYD3_k127_6340568_1 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 306.0
BYD3_k127_6340568_2 Tfp pilus assembly protein FimV - - - 0.0000000000000000000000000000003266 128.0
BYD3_k127_6340568_3 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000001213 73.0
BYD3_k127_6359548_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 1.07e-245 764.0
BYD3_k127_6359548_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006187 576.0
BYD3_k127_6359548_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 385.0
BYD3_k127_6359548_3 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000000000000000000000000009739 157.0
BYD3_k127_6379874_0 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 2.003e-221 696.0
BYD3_k127_6379874_1 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 472.0
BYD3_k127_6379874_2 Oxidoreductase NAD-binding domain K00528,K02641,K15511 - 1.14.13.208,1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006405 458.0
BYD3_k127_6379874_3 Peptidase C26 K01658,K07010 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007436 301.0
BYD3_k127_6379874_4 Protein of unknown function (DUF3305) - - - 0.000000000000000000000000000000000000000000000000000000000001742 217.0
BYD3_k127_6379874_5 Protein of unknown function (DUF3306) - - - 0.000000000000000000000000000001521 135.0
BYD3_k127_6389976_0 Molecular chaperone. Has ATPase activity K04079 - - 0.0000000000000000000000000001647 114.0
BYD3_k127_6389976_1 lysyltransferase activity K07027 - - 0.000000000000000000009697 104.0
BYD3_k127_6389976_2 2OG-Fe(II) oxygenase superfamily - - - 0.0003362 49.0
BYD3_k127_6394484_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 586.0
BYD3_k127_6394484_1 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 472.0
BYD3_k127_6394484_2 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005455 391.0
BYD3_k127_6394484_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 329.0
BYD3_k127_6394484_4 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 319.0
BYD3_k127_6394484_5 Methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000000000000000000000003475 245.0
BYD3_k127_6394484_6 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000000001919 236.0
BYD3_k127_6394484_7 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000006263 173.0
BYD3_k127_6394484_8 Outer membrane lipoprotein K02494 - - 0.000000000000000000000000000000000008808 142.0
BYD3_k127_6411918_0 Amidase K02433 - 6.3.5.6,6.3.5.7 4.581e-247 770.0
BYD3_k127_6411918_1 amino acid ABC transporter K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004349 290.0
BYD3_k127_6411918_2 PFAM Extracellular solute-binding protein, family 3 K10001 - - 0.00000000000000000000000000001305 123.0
BYD3_k127_6451470_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 1.837e-226 707.0
BYD3_k127_6451470_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 447.0
BYD3_k127_6451470_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000005825 128.0
BYD3_k127_6452268_0 Mammalian cell entry related domain protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 411.0
BYD3_k127_6452268_1 6-phosphogluconate dehydrogenase, NAD-binding K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000001454 249.0
BYD3_k127_6452268_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000005011 236.0
BYD3_k127_6452268_3 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000001104 222.0
BYD3_k127_6452268_4 - - - - 0.000001863 58.0
BYD3_k127_6465902_0 PFAM Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 475.0
BYD3_k127_6465902_1 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 382.0
BYD3_k127_6465902_2 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005411 324.0
BYD3_k127_6465902_3 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006152,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016053,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019439,GO:0019510,GO:0019752,GO:0030554,GO:0031667,GO:0033353,GO:0034641,GO:0034655,GO:0034656,GO:0036094,GO:0036293,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046700,GO:0048037,GO:0048511,GO:0048512,GO:0050662,GO:0050667,GO:0050896,GO:0051186,GO:0051187,GO:0051287,GO:0055086,GO:0070482,GO:0071268,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097458,GO:0098604,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901657,GO:1901658 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 302.0
BYD3_k127_6465902_4 PFAM OmpW family protein K07275 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007536 290.0
BYD3_k127_6465902_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000007669 139.0
BYD3_k127_6483151_0 PFAM Periplasmic binding protein LacI transcriptional regulator K10439,K10552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005519 574.0
BYD3_k127_6483151_1 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002781 263.0
BYD3_k127_6483151_2 Belongs to the binding-protein-dependent transport system permease family K02057,K10440,K10538 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001598 248.0
BYD3_k127_6483151_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000241 254.0
BYD3_k127_6499661_0 Amino acid amide ABC transporter substrate-binding protein, HAAT family K01999 - - 3.506e-261 810.0
BYD3_k127_6499661_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 7.579e-214 666.0
BYD3_k127_6499661_10 PFAM NADH flavin oxidoreductase NADH oxidase K00219,K09461 - 1.14.13.40,1.3.1.34 0.000000000000000000000003615 102.0
BYD3_k127_6499661_11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.0000001686 54.0
BYD3_k127_6499661_12 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.00001418 55.0
BYD3_k127_6499661_2 AMP-binding enzyme K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 612.0
BYD3_k127_6499661_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007104 559.0
BYD3_k127_6499661_4 PFAM ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 495.0
BYD3_k127_6499661_5 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008377 492.0
BYD3_k127_6499661_6 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 484.0
BYD3_k127_6499661_7 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000001299 138.0
BYD3_k127_6499661_8 - - - - 0.0000000000000000000000000000000000215 143.0
BYD3_k127_6499661_9 Domain of unknown function (DUF1840) - - - 0.000000000000000000000000000000001141 132.0
BYD3_k127_6503502_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1052.0
BYD3_k127_6503502_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 498.0
BYD3_k127_6503502_2 PFAM Phosphoglycerate mutase K08296 - - 0.0000000000000000000000000000000000000000000000000000000000000000002734 232.0
BYD3_k127_6503502_3 Prokaryotic N-terminal methylation motif K02672 - - 0.0000000000000000000000000000000000000000000000000005894 194.0
BYD3_k127_6503502_4 Transcriptional regulator K10914 - - 0.00000000000000000000000000000000000000005595 160.0
BYD3_k127_6503502_5 Type II transport protein GspH K08084 - - 0.0000000000000000000000000000000006894 139.0
BYD3_k127_6503502_6 pilus modification protein PilV K02671 - - 0.00000000000000000000003179 109.0
BYD3_k127_6512979_0 PFAM Rieske 2Fe-2S domain protein K03862,K18068 - 1.14.12.7,1.14.13.82 2.33e-203 638.0
BYD3_k127_6512979_1 oxidoreductase FAD NAD(P)-binding domain protein K03863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 449.0
BYD3_k127_6512979_2 AAA ATPase, central domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 428.0
BYD3_k127_6512979_3 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000000000000000005305 194.0
BYD3_k127_6535482_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 425.0
BYD3_k127_6535482_1 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006586 370.0
BYD3_k127_6535482_2 PFAM NUDIX hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 317.0
BYD3_k127_6535482_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000000000001267 210.0
BYD3_k127_6535482_4 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000004164 147.0
BYD3_k127_6535573_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 1.663e-316 972.0
BYD3_k127_6535573_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 6.499e-283 877.0
BYD3_k127_6535573_10 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000000000000000003138 237.0
BYD3_k127_6535573_11 Exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000005276 225.0
BYD3_k127_6535573_12 PFAM Type II secretion system protein I J K02458 - - 0.00000000000000000000000000000000001252 142.0
BYD3_k127_6535573_13 General secretion pathway protein H K02457 - - 0.00000000000000000000000000000001927 133.0
BYD3_k127_6535573_14 general secretion pathway protein K02452 - - 0.00000000000000000000003226 105.0
BYD3_k127_6535573_15 Prokaryotic N-terminal methylation motif K02459 - - 0.00000000000000000003235 95.0
BYD3_k127_6535573_2 Putative nucleotidyltransferase substrate binding domain K07182 - - 3.107e-251 793.0
BYD3_k127_6535573_3 PFAM fatty acid desaturase K00507 - 1.14.19.1 5.054e-200 630.0
BYD3_k127_6535573_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 599.0
BYD3_k127_6535573_5 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 341.0
BYD3_k127_6535573_6 PFAM OsmC family protein K07397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 287.0
BYD3_k127_6535573_7 PFAM porin Gram-negative type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002017 275.0
BYD3_k127_6535573_8 Gram-negative porin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003954 270.0
BYD3_k127_6535573_9 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000124 268.0
BYD3_k127_6539116_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 1.392e-206 644.0
BYD3_k127_6539116_1 Protein of unknown function (DUF808) K09781 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007037 387.0
BYD3_k127_6539116_2 TIR domain - - - 0.00000000000000000000000000000000000000000000000000001783 202.0
BYD3_k127_6541737_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 3.43e-210 664.0
BYD3_k127_6541737_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004193 386.0
BYD3_k127_6541737_2 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004853 355.0
BYD3_k127_6541737_3 PFAM regulatory protein AsnC Lrp family K03719 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006251 245.0
BYD3_k127_6541737_4 - - - - 0.0000000000000000000000000000000000000000000000000000000004972 221.0
BYD3_k127_6550848_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 2.435e-289 893.0
BYD3_k127_6550848_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007232 587.0
BYD3_k127_6550848_2 Transcriptional regulator, LysR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 462.0
BYD3_k127_6550848_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 432.0
BYD3_k127_6550848_4 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001822 266.0
BYD3_k127_6551635_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 348.0
BYD3_k127_6551635_1 Regulatory protein GntR HTH K11475 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004309 342.0
BYD3_k127_6551635_2 Methionine synthase K00549 - 2.1.1.14 0.00000000000000001238 84.0
BYD3_k127_6555117_0 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 4.033e-203 641.0
BYD3_k127_6555117_1 Transcriptional regulator K05596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 477.0
BYD3_k127_6555117_2 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007452 282.0
BYD3_k127_6555117_3 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000005126 191.0
BYD3_k127_6555117_4 Belongs to the universal stress protein A family - - - 0.00000000000000009257 79.0
BYD3_k127_6567110_0 Aldo/keto reductase family K19265 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 594.0
BYD3_k127_6567110_1 TIGRFAM methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 381.0
BYD3_k127_6578718_0 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 456.0
BYD3_k127_6578718_1 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 284.0
BYD3_k127_6578718_2 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004121 247.0
BYD3_k127_6578718_3 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.000000000000000004361 85.0
BYD3_k127_6579601_0 KR domain K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 424.0
BYD3_k127_6579601_1 regulatory protein GntR HTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 396.0
BYD3_k127_6579601_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 286.0
BYD3_k127_6579601_3 Transcriptional regulatory protein, C terminal K07663 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008895 263.0
BYD3_k127_6579601_4 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000003521 129.0
BYD3_k127_6579601_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07641 - 2.7.13.3 0.00000000000000000664 86.0
BYD3_k127_6591261_0 Two component transcriptional regulator K11329 - - 0.00000000000000000000000000000000000000000000000000000000000000003652 224.0
BYD3_k127_6591261_1 LTXXQ motif family protein - - - 0.00000000000000000000000000000000000000000000000000000000004568 210.0
BYD3_k127_6591261_2 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) K14189 - - 0.000000000000000000000000000000000000000001083 162.0
BYD3_k127_6609014_0 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697,K03692 - 2.4.1.15,2.4.1.213,2.4.1.347 3.813e-240 752.0
BYD3_k127_6609014_1 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006942 316.0
BYD3_k127_6609014_2 - - - - 0.000000000000000000000000006265 115.0
BYD3_k127_6609014_3 PFAM Glycoside hydrolase 15-related - - - 0.0000000000000001651 78.0
BYD3_k127_6614252_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005964 440.0
BYD3_k127_6614252_1 Belongs to the DEAD box helicase family K05591 GO:0000339,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0016070,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0060255,GO:0065007,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 3.6.4.13 0.00000000000000000000000000000000000000000000001795 171.0
BYD3_k127_6629020_0 PFAM binding-protein-dependent transport systems inner membrane component K10228 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 507.0
BYD3_k127_6629020_1 PFAM binding-protein-dependent transport systems inner membrane component K10229,K17323 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008831 485.0
BYD3_k127_6629020_2 Belongs to the ABC transporter superfamily K10111 - - 0.0000000000000000000000000000000000000000000000000000004424 210.0
BYD3_k127_6631998_0 Tripartite ATP-independent periplasmic transporter, DctM component K03299 - - 1.992e-263 826.0
BYD3_k127_6631998_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 2.577e-195 616.0
BYD3_k127_6631998_2 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 392.0
BYD3_k127_6631998_3 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004021 254.0
BYD3_k127_6644016_0 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 515.0
BYD3_k127_6644016_1 tRNA rRNA methyltransferase, SpoU K03437 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007613 254.0
BYD3_k127_6654860_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.0 2509.0
BYD3_k127_6654860_1 His Kinase A (phosphoacceptor) domain - - - 5.236e-232 732.0
BYD3_k127_6654860_11 - - - - 0.0003 49.0
BYD3_k127_6654860_2 cheY-homologous receiver domain K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 366.0
BYD3_k127_6654860_3 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 295.0
BYD3_k127_6654860_4 Beta/gamma crystallins - - - 0.0000000000000000000000000000000000000000000000001182 185.0
BYD3_k127_6654860_5 BON domain - - - 0.0000000000000000000000000000001377 130.0
BYD3_k127_6654860_7 Bacterial protein of unknown function (DUF898) - - - 0.0000000000000004412 79.0
BYD3_k127_6654860_8 - - - - 0.00000000000002895 78.0
BYD3_k127_6654860_9 - - - - 0.0000000000007395 78.0
BYD3_k127_6682930_0 The type iv (conjugal dna-protein transfer) secretory pathway (ivsp) family go 0030255 go 0015449 K03201 - - 0.00000000000000000001778 106.0
BYD3_k127_6682930_1 multivesicular body membrane disassembly - - - 0.000000000000003238 83.0
BYD3_k127_6689114_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 1.878e-255 790.0
BYD3_k127_6689114_1 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003174 531.0
BYD3_k127_6689114_2 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000000000000000007273 159.0
BYD3_k127_6689114_3 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.000000000000000000000000000000000000995 138.0
BYD3_k127_6689114_4 AAA domain - - - 0.00000000000000000000000000002168 127.0
BYD3_k127_6689114_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.000000000000000000000000000136 117.0
BYD3_k127_6739850_0 Putative amidoligase enzyme (DUF2126) - - - 1.239e-317 985.0
BYD3_k127_6739850_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000006335 117.0
BYD3_k127_6742380_0 PFAM extracellular solute-binding protein family 1 K17315 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004487 433.0
BYD3_k127_6742380_1 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 363.0
BYD3_k127_6742380_2 PFAM Thioredoxin domain K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000154 247.0
BYD3_k127_675131_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005105 481.0
BYD3_k127_675131_1 Type III secretion exporter K02401 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007246 402.0
BYD3_k127_6753967_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.438e-251 777.0
BYD3_k127_6753967_1 COG1072 Panthothenate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003829 254.0
BYD3_k127_6753967_2 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000008134 229.0
BYD3_k127_6753967_3 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000005989 211.0
BYD3_k127_6753967_4 - - - - 0.0000000000000000000000000000000000006106 161.0
BYD3_k127_676327_0 Serine threonine protein kinase - - - 7.194e-201 628.0
BYD3_k127_676327_1 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 430.0
BYD3_k127_676327_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000007929 224.0
BYD3_k127_676327_3 domain protein - - - 0.000000000000000000000001782 106.0
BYD3_k127_6784549_0 dehydrogenase, E1 component K00164 - 1.2.4.2 1.258e-207 648.0
BYD3_k127_678579_0 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 1.717e-214 671.0
BYD3_k127_678579_1 Four helix bundle sensory module for signal transduction K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 375.0
BYD3_k127_678579_2 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 321.0
BYD3_k127_678579_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007053 281.0
BYD3_k127_678579_4 PFAM RNP-1 like RNA-binding protein - - - 0.000000000000000000000000000000000000000000000000000000389 197.0
BYD3_k127_6807967_0 PFAM Dual specificity protein phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000695 544.0
BYD3_k127_6807967_1 PFAM phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 526.0
BYD3_k127_6807967_2 Uncharacterized protein conserved in bacteria (DUF2145) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 357.0
BYD3_k127_6807967_3 PFAM phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005223 310.0
BYD3_k127_6807967_4 PFAM YiaAB two helix domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002554 245.0
BYD3_k127_6807967_5 - - - - 0.0000000000000000000000000000000000000005671 153.0
BYD3_k127_6807967_6 - - - - 0.000000000000000009827 96.0
BYD3_k127_6807967_7 Membrane - - - 0.00000000000000005561 83.0
BYD3_k127_6841096_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 4.944e-263 812.0
BYD3_k127_6841096_1 pilus assembly protein FimV K08086 - - 1.52e-225 729.0
BYD3_k127_6841096_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009219 503.0
BYD3_k127_6841096_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 421.0
BYD3_k127_6841096_4 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 295.0
BYD3_k127_6844725_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 487.0
BYD3_k127_6844725_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 353.0
BYD3_k127_6844725_2 NIPSNAP family containing protein - - - 0.00000000000000000000000000000000000000000000000000000464 194.0
BYD3_k127_6844725_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000000000000008491 171.0
BYD3_k127_6844725_4 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000000000000001876 134.0
BYD3_k127_6846475_0 COG0744 Membrane carboxypeptidase (penicillin-binding protein) - - - 0.0 1349.0
BYD3_k127_6846475_1 TIGRFAM Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 475.0
BYD3_k127_6846475_2 NMT1-like family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 405.0
BYD3_k127_6846475_3 Protein of unknown function (DUF1439) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004749 242.0
BYD3_k127_6846475_4 Phospholipase D. Active site motifs. K06132 - - 0.000000000000000000000000000000000000000000000000000000000000005791 235.0
BYD3_k127_6846475_5 Protein of unknown function (DUF3297) - - - 0.00000000000000000000000000000000000001715 146.0
BYD3_k127_6846475_6 - - - - 0.00000000000000000000000000000009117 146.0
BYD3_k127_6846475_7 Belongs to the DEAD box helicase family K05591 GO:0000339,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0016070,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0060255,GO:0065007,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 3.6.4.13 0.0000000000000000000002238 96.0
BYD3_k127_6858193_0 Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and or methyl galactoside import. Responsible for energy coupling to the transport system K10441 - 3.6.3.17 7.692e-205 639.0
BYD3_k127_6858193_1 Belongs to the binding-protein-dependent transport system permease family K02057,K10440,K10538 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 569.0
BYD3_k127_6860585_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 4.774e-195 619.0
BYD3_k127_6860585_1 Catalase K03781 GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0006972,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009628,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0043167,GO:0043169,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070887,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1990748 1.11.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 470.0
BYD3_k127_6860585_2 Belongs to the catalase family K03781 - 1.11.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005377 471.0
BYD3_k127_6860585_3 Domain of unknown function (DUF4142) K08995 - - 0.0000000000000000000000000000000000007132 145.0
BYD3_k127_686098_0 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009163 320.0
BYD3_k127_686098_1 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009154 310.0
BYD3_k127_686098_2 - - - - 0.00000000000000000000000000000008219 140.0
BYD3_k127_686098_3 Prokaryotic N-terminal methylation motif - - - 0.0001454 46.0
BYD3_k127_6864221_0 ABC transporter K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 344.0
BYD3_k127_6864221_1 PFAM ABC-2 type transporter K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 301.0
BYD3_k127_6864221_2 PFAM regulatory protein, MarR - - - 0.00000000000000000000000000000000000000000000000009345 181.0
BYD3_k127_6864221_3 Protein of unknown function (DUF3096) - - - 0.000000000000976 71.0
BYD3_k127_6864221_4 FAD binding domain K00480,K22270 - 1.14.13.1,1.14.13.24 0.000000001448 60.0
BYD3_k127_6864221_5 RND efflux system, outer membrane lipoprotein K18903 - - 0.0001746 44.0
BYD3_k127_6878944_0 PFAM UBA THIF-type NAD FAD binding protein K21029 - 2.7.7.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000437 384.0
BYD3_k127_6878944_1 Uncharacterised 5xTM membrane BCR, YitT family COG1284 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001384 266.0
BYD3_k127_6878944_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000005011 243.0
BYD3_k127_6878944_3 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.00000000000000000000000000000000000000000003336 169.0
BYD3_k127_6882284_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1202.0
BYD3_k127_6882284_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 324.0
BYD3_k127_6882284_2 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000000000000000000002145 191.0
BYD3_k127_6882284_3 Bacterial regulatory proteins, tetR family - - - 0.0000000387 59.0
BYD3_k127_6910336_0 Hydrolases of the alpha beta superfamily K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 585.0
BYD3_k127_6910336_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 546.0
BYD3_k127_6910336_2 amine oxidase K00466 - 1.13.12.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007927 316.0
BYD3_k127_6910336_3 Lysine exporter protein (Lyse ygga) K06895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 297.0
BYD3_k127_6910336_4 sulfurtransferase activity - - - 0.000000000000000000000000000000000000000000000000001784 188.0
BYD3_k127_6910336_5 Transcriptional regulator K04033 - - 0.000000000004158 66.0
BYD3_k127_6912354_0 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007165 352.0
BYD3_k127_6912354_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 344.0
BYD3_k127_6912354_2 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000051 278.0
BYD3_k127_6912354_3 SnoaL-like domain K01822 - 5.3.3.1 0.0000000000000000000000000000000000000000000000000000004236 197.0
BYD3_k127_6915330_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 478.0
BYD3_k127_6915330_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 447.0
BYD3_k127_6915330_2 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 405.0
BYD3_k127_6933808_0 Amino acid permease - - - 1.367e-198 629.0
BYD3_k127_6933808_1 helix_turn_helix, arabinose operon control protein K04033 - - 0.0000000000000000000000000000000000000000000000000000000000001986 226.0
BYD3_k127_6939853_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003219 552.0
BYD3_k127_6939853_1 Transcriptional regulator, Crp Fnr family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004337 346.0
BYD3_k127_6941052_0 PFAM glycosyl transferase family 2 K03669 - - 2.045e-319 992.0
BYD3_k127_6941052_1 Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) K03670 - - 1.47e-224 707.0
BYD3_k127_6941052_2 response regulator K07715 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004529 471.0
BYD3_k127_6960583_0 Winged helix DNA-binding domain K09927 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006426 465.0
BYD3_k127_6960583_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 420.0
BYD3_k127_6960583_2 PFAM monooxygenase FAD-binding K00480 - 1.14.13.1 0.000000000000000000000000000009929 119.0
BYD3_k127_6960583_3 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006139,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009108,GO:0009117,GO:0009165,GO:0009308,GO:0009310,GO:0009435,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019441,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0020037,GO:0022607,GO:0034641,GO:0034654,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043648,GO:0043650,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0046906,GO:0048037,GO:0051186,GO:0051188,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606 1.13.11.11 0.00000000000000002451 81.0
BYD3_k127_6960583_4 - - - - 0.0000000000001637 75.0
BYD3_k127_6969285_0 PFAM Type II secretion system protein E K02454,K02652 - - 1.15e-300 931.0
BYD3_k127_6969285_1 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002915 381.0
BYD3_k127_6969285_2 PFAM TatD-related deoxyribonuclease K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002016 263.0
BYD3_k127_6969285_3 G T U mismatch-specific DNA glycosylase K03649 - 3.2.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000001471 243.0
BYD3_k127_6969285_4 PFAM Cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000003228 145.0
BYD3_k127_6971738_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1222.0
BYD3_k127_6971738_1 PFAM isocitrate lyase and phosphorylmutase K01637 - 4.1.3.1 1.528e-226 702.0
BYD3_k127_6971738_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 336.0
BYD3_k127_69821_0 C4-dicarboxylate transporter malic acid transport protein K03304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 340.0
BYD3_k127_69821_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006411 265.0
BYD3_k127_69821_2 Protein of unknown function (DUF2892) - - - 0.000000000000000000000000000002037 121.0
BYD3_k127_69821_3 Metal-sensitive transcriptional repressor - - - 0.000000000006871 74.0
BYD3_k127_6984498_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1106.0
BYD3_k127_6984498_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 359.0
BYD3_k127_7010614_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 5.58e-295 911.0
BYD3_k127_7010614_1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 4.947e-222 690.0
BYD3_k127_7010614_10 VanZ like family - - - 0.00000000000000000000000000000000002293 140.0
BYD3_k127_7010614_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000955 607.0
BYD3_k127_7010614_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 452.0
BYD3_k127_7010614_4 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 429.0
BYD3_k127_7010614_5 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 425.0
BYD3_k127_7010614_6 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008902 403.0
BYD3_k127_7010614_7 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005659 332.0
BYD3_k127_7010614_8 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000004856 239.0
BYD3_k127_7010614_9 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000000000000002123 216.0
BYD3_k127_7014304_0 A predicted alpha-helical domain with a conserved ER motif. - - - 0.0 1025.0
BYD3_k127_7014304_1 Bacterial transglutaminase-like N-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 359.0
BYD3_k127_7014304_2 Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity K14540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 351.0
BYD3_k127_7014304_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000003136 216.0
BYD3_k127_7014304_4 Putative amidoligase enzyme (DUF2126) - - - 0.0000000000000000000000000000000000000000000005924 166.0
BYD3_k127_706160_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 1.905e-204 638.0
BYD3_k127_706160_1 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 386.0
BYD3_k127_706160_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 308.0
BYD3_k127_706160_3 Glycosyl transferase, family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000001702 244.0
BYD3_k127_706160_4 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000001683 226.0
BYD3_k127_706160_5 group 2 family protein - - - 0.0000000000000000000000000000000000000000000001039 182.0
BYD3_k127_706160_6 lysyltransferase activity K07027 - - 0.000000000000000000000000000000131 136.0
BYD3_k127_7070790_0 Required for the activity of the bacterial periplasmic transport system of putrescine K11073 - - 3.108e-277 861.0
BYD3_k127_7070790_1 Belongs to the UPF0276 family K09930 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005302 580.0
BYD3_k127_7070790_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 536.0
BYD3_k127_7070790_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005432 350.0
BYD3_k127_7070790_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002924 269.0
BYD3_k127_7070790_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002381 252.0
BYD3_k127_7070790_6 phage shock protein A, PspA K03969 - - 0.00000000000000000000000000000000000000000000000000000000000000003615 235.0
BYD3_k127_7070790_7 - - - - 0.00000000000000000000000000000000000000002543 162.0
BYD3_k127_7070790_8 - - - - 0.000000000000000000000005133 104.0
BYD3_k127_7075651_0 Cytochrome P450 - - - 2.704e-205 666.0
BYD3_k127_7075651_1 helix_turn_helix gluconate operon transcriptional repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 459.0
BYD3_k127_7075651_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006026 284.0
BYD3_k127_7093858_0 Belongs to the glycosyl hydrolase 31 family - - - 0.0 1198.0
BYD3_k127_7093858_1 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 440.0
BYD3_k127_7093858_2 Type II/IV secretion system protein K02454 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007648 347.0
BYD3_k127_7093858_3 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000006856 208.0
BYD3_k127_713484_0 Proton-conducting membrane transporter - - - 0.0 1089.0
BYD3_k127_713484_1 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 529.0
BYD3_k127_713484_2 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003812 360.0
BYD3_k127_713484_3 Proton-conducting membrane transporter K12141 - - 0.00000000000000000000000000000000000000000000000000000000000395 211.0
BYD3_k127_7150148_0 SMART helix-turn-helix- domain containing protein, AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 459.0
BYD3_k127_7150148_1 isochorismatase hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 289.0
BYD3_k127_7150148_2 NAD(P)H-binding - - - 0.00000000000000000000001967 101.0
BYD3_k127_7152195_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01584 - 4.1.1.19 0.0 1405.0
BYD3_k127_7152195_1 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008321 407.0
BYD3_k127_7152195_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005372 280.0
BYD3_k127_7152195_3 Protein of unknown function (DUF465) K09794 - - 0.0000000000000000000000001235 108.0
BYD3_k127_7159577_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit K03299 - - 1.213e-260 816.0
BYD3_k127_7159577_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 538.0
BYD3_k127_7159577_11 - - - - 0.0001627 53.0
BYD3_k127_7159577_2 SMART transcription factor jumonji jmjC K18850 - 1.14.11.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 514.0
BYD3_k127_7159577_3 Nlpbdapx family lipoprotein K07287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 511.0
BYD3_k127_7159577_4 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009092 373.0
BYD3_k127_7159577_5 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001619 268.0
BYD3_k127_7159577_6 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004747 269.0
BYD3_k127_7159577_7 Peptidylprolyl isomerase K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000002093 264.0
BYD3_k127_7159577_8 - - - - 0.00000000000000000000000000000000000000000000000000009704 193.0
BYD3_k127_7159577_9 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - 0.000000000000000000000000005088 112.0
BYD3_k127_7187226_0 fad dependent oxidoreductase K00303 - 1.5.3.1 1.491e-218 684.0
BYD3_k127_7187226_1 BFD domain protein 2Fe-2S -binding domain protein K10815 - 1.4.99.5 5.664e-213 672.0
BYD3_k127_7187226_2 PFAM type III effector Hrp-dependent outers K21948 - 2.7.1.217 3.665e-198 627.0
BYD3_k127_7187226_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 476.0
BYD3_k127_7187226_4 Protein of unknown function (DUF861) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 456.0
BYD3_k127_7187226_5 Class II aldolase K01628,K22130 - 4.1.1.104,4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 385.0
BYD3_k127_7187226_6 Asp Glu Hydantoin racemase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003543 334.0
BYD3_k127_7187226_7 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000121 258.0
BYD3_k127_7187226_8 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000004861 122.0
BYD3_k127_7190681_0 PFAM acyl-CoA dehydrogenase domain protein K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000736 314.0
BYD3_k127_7190681_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 282.0
BYD3_k127_7190681_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000606 269.0
BYD3_k127_7190681_3 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000000009288 232.0
BYD3_k127_7190681_4 GtrA-like protein - - - 0.0000000000000000000000000000000000000000008752 168.0
BYD3_k127_7199926_0 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000891 258.0
BYD3_k127_7199926_1 Predicted integral membrane protein (DUF2282) - - - 0.000000000000000000000000000000000000008392 148.0
BYD3_k127_7199926_2 - - - - 0.0000000000000000009543 91.0
BYD3_k127_7199926_3 - - - - 0.00002726 49.0
BYD3_k127_7207558_0 Divalent cation transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002181 443.0
BYD3_k127_7207558_1 histidine kinase dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 448.0
BYD3_k127_7207558_2 ABC transporter, transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009234 325.0
BYD3_k127_7207558_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006143 257.0
BYD3_k127_7207558_4 Transcriptional regulator crp fnr family K01420 - - 0.00000000000000000000000000000000000000000000000000000000007436 214.0
BYD3_k127_7207558_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000009651 158.0
BYD3_k127_7207558_6 AMP binding - - - 0.0000000000000000000000000000000007151 136.0
BYD3_k127_7214066_0 Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 353.0
BYD3_k127_7214066_1 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009438 280.0
BYD3_k127_7214066_2 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009982 273.0
BYD3_k127_7214066_3 PFAM MaoC domain protein dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008321 256.0
BYD3_k127_7214066_4 Phosphoribosyl transferase domain - - - 0.00000000000005198 73.0
BYD3_k127_7223529_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1630.0
BYD3_k127_7223529_1 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 408.0
BYD3_k127_7223529_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 317.0
BYD3_k127_7223529_3 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005837 301.0
BYD3_k127_7223529_4 HaD-superfamily hydrolase, subfamily ia, variant 3 K22292 - 3.1.3.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 305.0
BYD3_k127_7223529_5 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 282.0
BYD3_k127_7223529_6 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000000000000000000000000000000000000000000000002444 213.0
BYD3_k127_7226074_0 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007051 414.0
BYD3_k127_7226074_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 346.0
BYD3_k127_7226074_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 311.0
BYD3_k127_7234313_0 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 306.0
BYD3_k127_7234313_1 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002905 267.0
BYD3_k127_7234313_2 gag-polyprotein putative aspartyl protease K06985 - - 0.000000000000000000000000000000000000000000000000000000000000000000008283 241.0
BYD3_k127_7234313_3 endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000003332 174.0
BYD3_k127_7234313_4 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000007785 104.0
BYD3_k127_7234527_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 479.0
BYD3_k127_7234527_1 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 341.0
BYD3_k127_7234527_2 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 302.0
BYD3_k127_7234527_3 - - - - 0.0000000000000000000000000000000000000000000000000002692 190.0
BYD3_k127_7234527_4 Lactonase, 7-bladed beta-propeller - - - 0.00000536 57.0
BYD3_k127_7237169_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.064e-221 692.0
BYD3_k127_7237169_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 463.0
BYD3_k127_7237169_2 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 385.0
BYD3_k127_7237169_3 peptidase S49 K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 363.0
BYD3_k127_7237169_4 PFAM Rieske 2Fe-2S domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000001186 218.0
BYD3_k127_7237169_5 H-NS histone family K03746 - - 0.000000000000000000000000000002963 123.0
BYD3_k127_7237280_0 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 489.0
BYD3_k127_7237280_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005917 476.0
BYD3_k127_7237280_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000000001455 176.0
BYD3_k127_7237280_3 racemase activity, acting on amino acids and derivatives - - - 0.0000000000000000000000003802 106.0
BYD3_k127_7237280_4 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000000000000000000007733 106.0
BYD3_k127_7241246_0 ABC transporter K10548 - 3.6.3.17 1.87e-289 894.0
BYD3_k127_7241246_1 Belongs to the binding-protein-dependent transport system permease family K10547 - - 3.055e-213 667.0
BYD3_k127_7241246_2 Periplasmic binding protein domain K10543,K10546 - - 8.475e-208 649.0
BYD3_k127_7241246_3 Periplasmic binding protein LacI transcriptional regulator K02058,K10439 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 323.0
BYD3_k127_7257641_0 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 508.0
BYD3_k127_7257641_1 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 490.0
BYD3_k127_7257641_2 PFAM major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 341.0
BYD3_k127_7257641_3 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001425 301.0
BYD3_k127_7257641_4 Class ii aldolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000005355 234.0
BYD3_k127_7263761_0 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 376.0
BYD3_k127_7263761_1 peptidase S49 K04773 - - 0.0000001547 53.0
BYD3_k127_729291_0 Ompa motb domain protein - - - 1.35e-304 980.0
BYD3_k127_729291_1 Domain of unknown function DUF11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007793 389.0
BYD3_k127_729291_2 Putative Ig domain - - - 0.0000000000000000000000000000000000000000000001588 192.0
BYD3_k127_730605_0 PBP superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009728 460.0
BYD3_k127_730605_1 PFAM Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K00122 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 362.0
BYD3_k127_730605_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122 - 1.17.1.9 0.00000000000000000000000000000000000000004399 159.0
BYD3_k127_7316901_0 Glycosyl transferase, family 2 K12984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 451.0
BYD3_k127_7316901_1 Polysaccharide pyruvyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 337.0
BYD3_k127_7316901_2 glycosyl transferase group 1 K03208 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 309.0
BYD3_k127_7316901_3 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001354 250.0
BYD3_k127_7316901_4 Bacterial transferase hexapeptide (six repeats) K03818 - - 0.00000000000000000000000000000000000000000000000000003662 195.0
BYD3_k127_7316901_5 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000008203 142.0
BYD3_k127_7316901_6 Acyltransferase family - - - 0.000000000000000000000000000001044 138.0
BYD3_k127_732062_0 6-phosphogluconate dehydrogenase, NAD-binding K00020,K00042 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006834 501.0
BYD3_k127_732062_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002087 278.0
BYD3_k127_732062_2 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000721 271.0
BYD3_k127_732062_3 SMART Transport-associated and nodulation region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002102 248.0
BYD3_k127_732062_4 Belongs to the UPF0102 family K07460 - - 0.000000000000000000000000000000000000000000002065 175.0
BYD3_k127_732062_5 PFAM Type II secretion system protein E K02670 - - 0.000000000003005 66.0
BYD3_k127_7338004_0 PFAM Major facilitator superfamily K02575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006462 605.0
BYD3_k127_7338004_1 Nitrate ABC transporter inner membrane subunit K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 476.0
BYD3_k127_7338004_2 TIGRFAM nitrate ABC transporter, ATPase subunits C and D K02049,K15578 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 466.0
BYD3_k127_7338004_3 NMT1-like family K02051,K15576,K22067 - - 0.0000000000000000000000000000000000000000000000000004657 184.0
BYD3_k127_733911_0 PhoD-like phosphatase K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 420.0
BYD3_k127_733911_1 Single-strand binding protein family - - - 0.000000000000000000000000000000000000000000001669 168.0
BYD3_k127_733911_2 - - - - 0.0000000001534 61.0
BYD3_k127_7381662_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1229.0
BYD3_k127_7381662_1 Participates in both transcription termination and antitermination K02600 - - 1.514e-272 844.0
BYD3_k127_7381662_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002405 273.0
BYD3_k127_7381662_3 Predicted integral membrane protein (DUF2189) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004705 274.0
BYD3_k127_7381662_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000002378 164.0
BYD3_k127_7381662_5 Belongs to the ABC transporter superfamily K02031,K02032,K13896 - - 0.000000000000000000000000000000000001352 139.0
BYD3_k127_7381662_6 Protein of unknown function (DUF2788) - - - 0.0000000000000000000000000884 113.0
BYD3_k127_7415213_0 ATPases associated with a variety of cellular activities K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 430.0
BYD3_k127_7415213_1 Oxidoreductase FAD-binding domain K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009282 381.0
BYD3_k127_7415213_2 Conserved hypothetical protein 698 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 320.0
BYD3_k127_7415213_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000001935 177.0
BYD3_k127_7415213_4 Protein of unknown function (DUF971) - - - 0.000000000000000001179 89.0
BYD3_k127_7415213_5 Acetyltransferase (GNAT) domain - - - 0.0000000003452 63.0
BYD3_k127_742533_0 ErfK YbiS YcfS YnhG - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007753 464.0
BYD3_k127_742533_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006175 305.0
BYD3_k127_742533_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001875 272.0
BYD3_k127_742533_3 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004466 273.0
BYD3_k127_742533_4 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000000000000003204 225.0
BYD3_k127_7445194_0 Belongs to the NifD NifK NifE NifN family K02587 - - 6.224e-295 908.0
BYD3_k127_7445194_1 Belongs to the NifD NifK NifE NifN family K02592 - - 2.06e-263 815.0
BYD3_k127_7445194_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 359.0
BYD3_k127_7445194_3 Nitrogen fixation protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003634 292.0
BYD3_k127_7445194_4 Nitrogen fixation protein NifX K02596 - - 0.0000000000000000000000000000000000000000000000000000000000000000004532 230.0
BYD3_k127_7445194_5 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000005553 209.0
BYD3_k127_7445194_6 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000261 201.0
BYD3_k127_7445194_7 PFAM NifQ family protein K15790 - - 0.0000000000000000000000000000000000000000000000000000009774 198.0
BYD3_k127_7445194_8 conserved small protein containing a coiled-coil domain - - - 0.00000000000000000000001088 104.0
BYD3_k127_7445194_9 helix-turn-helix- domain containing protein, AraC type K13529 - 3.2.2.21 0.0000000000000000000001019 100.0
BYD3_k127_7446084_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 408.0
BYD3_k127_7446084_1 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 351.0
BYD3_k127_7446084_2 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006248 341.0
BYD3_k127_7450906_0 Fumarylacetoacetate (Faa) hydrolase K16171 - 3.7.1.2 1.183e-198 623.0
BYD3_k127_7450906_1 PFAM Extracellular ligand-binding receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 522.0
BYD3_k127_7481297_0 Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain K00101 - 1.1.2.3 5.709e-208 653.0
BYD3_k127_7481297_1 - - - - 0.000000000000000000000000000000000000000000000000001632 192.0
BYD3_k127_7481297_2 Anti-sigma-K factor rskA - - - 0.000000000000002138 80.0
BYD3_k127_7484290_0 alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 436.0
BYD3_k127_7484290_1 Sodium hydrogen exchanger - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 422.0
BYD3_k127_7484290_2 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 402.0
BYD3_k127_7484290_3 AraC family transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005448 251.0
BYD3_k127_7484290_4 FR47-like protein - - - 0.000000000000000000000000002388 112.0
BYD3_k127_7503677_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 455.0
BYD3_k127_7503677_1 tRNA rRNA methyltransferase, SpoU K03437 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007147 354.0
BYD3_k127_7503677_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 293.0
BYD3_k127_7512598_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009216 546.0
BYD3_k127_7512598_1 PFAM FAD linked oxidase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004029 407.0
BYD3_k127_7512598_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 344.0
BYD3_k127_7512598_3 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 304.0
BYD3_k127_7512598_4 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000002544 194.0
BYD3_k127_7512598_5 Peptidase family M48 - - - 0.000000000000000006494 95.0
BYD3_k127_7533039_0 Pfam:Pyridox_oxidase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009918 560.0
BYD3_k127_7533039_1 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 374.0
BYD3_k127_7533039_2 PFAM cytochrome B561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006522 266.0
BYD3_k127_7533039_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001088 234.0
BYD3_k127_7533039_4 RF-1 domain K15034 - - 0.00000000000000000000000000000000000000000000000001775 183.0
BYD3_k127_7533039_5 Peptidase propeptide and YPEB domain - - - 0.00000000000000000000000000000000004778 136.0
BYD3_k127_7533924_0 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 1.614e-215 681.0
BYD3_k127_7533924_1 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001865 284.0
BYD3_k127_7533924_2 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.0000000000000000000000000000002338 130.0
BYD3_k127_7533924_3 nitroreductase - - - 0.00000000000000000000000000003396 119.0
BYD3_k127_7533924_4 - - - - 0.00000000000000000001479 98.0
BYD3_k127_7539619_0 TIGRFAM exopolysaccharide transport protein family K16554,K16692 - - 1.179e-206 669.0
BYD3_k127_7539619_1 capsular polysaccharide biosynthesis protein K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 312.0
BYD3_k127_7539619_2 Glycosyl transferase 4-like domain K03208 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000337 253.0
BYD3_k127_7539619_3 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000000000000000000000000000002844 232.0
BYD3_k127_7539619_4 DnaJ molecular chaperone homology domain - - - 0.00000001981 64.0
BYD3_k127_7539619_5 Membrane-bound lytic murein transglycosylase K08304 - - 0.000002438 49.0
BYD3_k127_7557030_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 568.0
BYD3_k127_7557030_1 Type III secretion exporter K02401,K03229 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 366.0
BYD3_k127_7557030_2 - - - - 0.000000000000000000000000000000000000000000000000000000000001578 229.0
BYD3_k127_7561309_0 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit B K10945 - - 3.839e-264 814.0
BYD3_k127_7561309_1 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit A K10944 GO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0016491,GO:0055114 1.14.18.3,1.14.99.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 587.0
BYD3_k127_7567251_0 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 3.008e-249 782.0
BYD3_k127_7567251_1 Bacterial protein of unknown function (Gcw_chp) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 356.0
BYD3_k127_7567251_2 Aldolase K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000000000000001084 246.0
BYD3_k127_7567251_3 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.00008235 46.0
BYD3_k127_7568213_0 Peptidase U32 K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 447.0
BYD3_k127_7568213_1 Protein of unknown function (DUF1624) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 344.0
BYD3_k127_7568213_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 308.0
BYD3_k127_7568213_3 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002029 242.0
BYD3_k127_757606_0 Mota tolq exbb proton channel K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 453.0
BYD3_k127_757606_1 PFAM OmpA MotB domain protein K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 374.0
BYD3_k127_757606_2 Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P) K03414 - - 0.00000000000000000000000000000000000000000000000000000000000000000006998 242.0
BYD3_k127_757606_3 response regulator, receiver K03413 - - 0.000000000000000000000000000000000000000000000000000000000000002242 221.0
BYD3_k127_7579899_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000001814 213.0
BYD3_k127_7579899_1 - - - - 0.00000000000000000000000000000000000000000000000000000001502 204.0
BYD3_k127_7579899_2 EF hand - - - 0.0000000000000007687 85.0
BYD3_k127_7579899_4 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.0000001686 54.0
BYD3_k127_7593704_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 497.0
BYD3_k127_7593704_1 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000004816 251.0
BYD3_k127_7595967_0 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 397.0
BYD3_k127_7595967_1 NapC/NirT cytochrome c family, N-terminal region K02569 - - 0.0000000000000000000000000000000000000000000000000000003283 199.0
BYD3_k127_7595967_2 Cytochrome c K08738 - - 0.00000000000000000000000000001646 126.0
BYD3_k127_7595967_3 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.00000000000000000000000001387 113.0
BYD3_k127_7595967_4 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.00000000000000003267 90.0
BYD3_k127_7596682_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 387.0
BYD3_k127_7596682_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 340.0
BYD3_k127_7596682_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002039 255.0
BYD3_k127_7596682_3 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000000000000000000000000000000000000000000000000001483 196.0
BYD3_k127_7596682_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000621 106.0
BYD3_k127_7610950_0 Belongs to the heat shock protein 70 family K04045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 433.0
BYD3_k127_7610950_1 Belongs to the GbsR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001614 250.0
BYD3_k127_7610950_2 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000713 139.0
BYD3_k127_7620996_0 FtsX-like permease family K02004 - - 0.0 1056.0
BYD3_k127_7620996_1 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 404.0
BYD3_k127_7620996_2 HlyD family secretion protein K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 413.0
BYD3_k127_7620996_3 Crp-like helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 353.0
BYD3_k127_7620996_4 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 297.0
BYD3_k127_7620996_5 SelR domain K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000003081 267.0
BYD3_k127_7620996_6 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000000000000000000000002693 126.0
BYD3_k127_7627214_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 9.778e-245 758.0
BYD3_k127_7627214_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 530.0
BYD3_k127_7627214_10 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000002441 58.0
BYD3_k127_7627214_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002118 516.0
BYD3_k127_7627214_3 malonyl CoA-acyl carrier protein transacylase K00645,K15355 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000827 502.0
BYD3_k127_7627214_4 Short-chain dehydrogenase reductase sdr K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 410.0
BYD3_k127_7627214_5 Uroporphyrin-iii c tetrapyrrole (Corrin porphyrin) methyltransferase K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 320.0
BYD3_k127_7627214_6 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 305.0
BYD3_k127_7627214_7 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000000000000000000000000179 172.0
BYD3_k127_7627214_8 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000000004763 146.0
BYD3_k127_7627214_9 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000000000000000000001377 128.0
BYD3_k127_7656462_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 419.0
BYD3_k127_7656462_1 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000001962 183.0
BYD3_k127_7656462_2 5-oxoprolinase K01469 - 3.5.2.9 0.000000000000000000007858 91.0
BYD3_k127_7657078_0 AraC family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 332.0
BYD3_k127_7657078_1 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000001182 226.0
BYD3_k127_7657078_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000005531 198.0
BYD3_k127_7657078_3 - - - - 0.00000000000004331 72.0
BYD3_k127_7657078_4 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.000006434 48.0
BYD3_k127_7661057_0 Belongs to the glycosyl hydrolase 32 family K01193 - 3.2.1.26 1.176e-259 802.0
BYD3_k127_7661057_1 Alcohol dehydrogenase GroES-like domain K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000008689 244.0
BYD3_k127_7662152_0 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005464 441.0
BYD3_k127_7662152_1 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 0.0000000000000000000000000000000000000000000000000003931 196.0
BYD3_k127_7662152_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000002051 117.0
BYD3_k127_7678853_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261 - 1.4.1.2,1.4.1.3 1.064e-245 763.0
BYD3_k127_7678853_1 Belongs to the DEAD box helicase family - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 1.829e-210 665.0
BYD3_k127_7678853_2 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 469.0
BYD3_k127_7678853_3 Bacterial extracellular solute-binding proteins, family 5 Middle K12368 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007535 463.0
BYD3_k127_7681764_0 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 484.0
BYD3_k127_7681764_1 Bacterial virulence protein (VirJ) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 470.0
BYD3_k127_76982_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 0.0 1107.0
BYD3_k127_76982_1 Thiamine pyrophosphate enzyme, central domain K01652 GO:0000166,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 310.0
BYD3_k127_76982_2 PFAM RDD domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009591 261.0
BYD3_k127_76982_3 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.0000000000000000000000000000000000000000000000000000000001666 206.0
BYD3_k127_76982_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000001374 158.0
BYD3_k127_76982_5 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000008327 146.0
BYD3_k127_7713012_0 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 2.597e-214 675.0
BYD3_k127_7713012_1 Two component transcriptional regulator, winged K02483,K07666,K07774 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 417.0
BYD3_k127_7713012_2 DNA topoisomerase, type IA, central domain protein K03169 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000009703 204.0
BYD3_k127_7732310_0 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005747 566.0
BYD3_k127_7732310_1 PFAM VanZ family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 431.0
BYD3_k127_7732310_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 293.0
BYD3_k127_7732310_3 hydrolase of the alpha beta superfamily K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006816 296.0
BYD3_k127_7732310_4 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008324 248.0
BYD3_k127_7732310_5 PFAM conserved K08973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003337 244.0
BYD3_k127_7732310_6 Response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000642 210.0
BYD3_k127_7732310_7 Ferredoxin - - - 0.0000000000000000000000000000000000000000000000000000001486 195.0
BYD3_k127_7732310_8 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0000000000000000000000000000000000000000002721 158.0
BYD3_k127_7732310_9 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.00000000000000000000001008 102.0
BYD3_k127_7742008_0 Glycosyl transferase family 21 - - - 6.266e-199 633.0
BYD3_k127_7742008_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006967 529.0
BYD3_k127_7742008_10 PFAM Hemerythrin HHE cation binding domain protein - - - 0.00000000000000000002547 98.0
BYD3_k127_7742008_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 494.0
BYD3_k127_7742008_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 378.0
BYD3_k127_7742008_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008681 321.0
BYD3_k127_7742008_5 OmpA-like transmembrane domain K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 319.0
BYD3_k127_7742008_6 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 304.0
BYD3_k127_7742008_7 - - - - 0.0000000000000000000000000000000000000000000000000000001434 209.0
BYD3_k127_7742008_8 - - - - 0.0000000000000000000000000000000000000000000000000000002757 215.0
BYD3_k127_7742008_9 polysaccharide deacetylase - - - 0.000000000000000000000000000001118 139.0
BYD3_k127_77529_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 1.523e-201 632.0
BYD3_k127_77529_1 Auxin Efflux Carrier K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 461.0
BYD3_k127_77529_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000001073 191.0
BYD3_k127_77529_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000001698 154.0
BYD3_k127_7788501_0 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 338.0
BYD3_k127_7788501_1 RNA-metabolising metallo-beta-lactamase K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 323.0
BYD3_k127_7788501_2 gamma-glutamyltransferase K00681 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004462 271.0
BYD3_k127_7788501_3 phenylacetate-CoA ligase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001025 253.0
BYD3_k127_779469_0 Auxin Efflux Carrier K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007735 347.0
BYD3_k127_779469_1 PFAM GCN5-related N-acetyltransferase K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 287.0
BYD3_k127_779469_2 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001434 280.0
BYD3_k127_779469_3 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007917 263.0
BYD3_k127_779469_4 Protein of unknown function (DUF3299) K09950 - - 0.00000000000000000000000000000000000000000000000000000002834 207.0
BYD3_k127_779469_5 TM2 domain - - - 0.000000000000000000000000000000000000000000000000003122 192.0
BYD3_k127_779469_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000000000000001922 136.0
BYD3_k127_779469_7 - - - - 0.00000000000000000000000001641 109.0
BYD3_k127_7805875_0 Mota tolq exbb proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006967 340.0
BYD3_k127_7805875_1 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000000000000000000000000000003954 198.0
BYD3_k127_7805875_2 TIGRFAM TonB family protein K03832 - - 0.0000000000000000000000000000000000000004671 151.0
BYD3_k127_7819333_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000608 424.0
BYD3_k127_7819333_1 Transcriptional regulator, GntR family K03710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 383.0
BYD3_k127_7819333_2 PFAM succinate dehydrogenase cytochrome b subunit K00241 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009817 242.0
BYD3_k127_7819333_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000003432 235.0
BYD3_k127_7819333_4 TIGRFAM Succinate dehydrogenase, hydrophobic membrane anchor K00242 - - 0.0000000000000000000000000000000000000000000000000000000003544 204.0
BYD3_k127_7843058_0 Belongs to the ClpA ClpB family K03694 - - 0.0000000000000000000000000000000000000000000000000000000000313 206.0
BYD3_k127_7843058_1 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000000000000000000000001248 173.0
BYD3_k127_7843058_2 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000002137 175.0
BYD3_k127_7844246_0 binding-protein-dependent transport systems inner membrane component K02011 - - 0.0 1089.0
BYD3_k127_7844246_1 extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 595.0
BYD3_k127_7844246_10 Tripartite tricarboxylate transporter TctA family K07793 - - 0.000000000000007136 74.0
BYD3_k127_7844246_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 510.0
BYD3_k127_7844246_3 Belongs to the ABC transporter superfamily K02010,K02052 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005681 501.0
BYD3_k127_7844246_4 Belongs to the ABC transporter superfamily K02010,K02052 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005099 314.0
BYD3_k127_7844246_5 Transcriptional regulatory protein, C terminal K07774 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009887 252.0
BYD3_k127_7844246_6 Histidine kinase K07649 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000003494 239.0
BYD3_k127_7844246_7 HaD-superfamily hydrolase, subfamily ia, variant 3 K07025,K20866 - 3.1.3.10 0.00000000000000000000000000000000000000000000000000000000000008156 219.0
BYD3_k127_7844246_8 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.00000000000000000000000000000000000000000000000000000204 205.0
BYD3_k127_7844246_9 PFAM porin Gram-negative type - - - 0.0000000000000000000000000000000000000000000000006909 187.0
BYD3_k127_784741_0 PFAM cytochrome c biogenesis protein, transmembrane region K04084,K08344 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002673 269.0
BYD3_k127_784741_1 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000001628 200.0
BYD3_k127_784741_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000006375 182.0
BYD3_k127_784741_3 Domain of unknown function (DUF4287) - - - 0.0000000000000000000000000356 110.0
BYD3_k127_784741_4 - - - - 0.0000000000000000001745 91.0
BYD3_k127_784741_5 - - - - 0.0006291 42.0
BYD3_k127_7852216_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 377.0
BYD3_k127_7852216_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 361.0
BYD3_k127_7852216_2 PFAM Squalene phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000006078 169.0
BYD3_k127_7857856_0 Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 293.0
BYD3_k127_7857856_1 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.000000000000000000000000000000000000000000000000000001196 194.0
BYD3_k127_7857856_2 Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02403 - - 0.0000000000000000000000000000000000000000000008336 172.0
BYD3_k127_7858956_0 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 466.0
BYD3_k127_7858956_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 366.0
BYD3_k127_7858956_2 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004703 261.0
BYD3_k127_7858956_3 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000005252 186.0
BYD3_k127_7858956_4 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000002188 164.0
BYD3_k127_7858956_5 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000005988 125.0
BYD3_k127_7859282_0 GTP-binding protein TypA K06207 - - 1.616e-248 768.0
BYD3_k127_7859282_1 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003626 509.0
BYD3_k127_7859282_2 GTP-binding protein TypA K06207 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 376.0
BYD3_k127_7859282_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 370.0
BYD3_k127_7859282_4 transmembrane transcriptional - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 310.0
BYD3_k127_7859282_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000003739 100.0
BYD3_k127_7874028_0 PFAM acyl-CoA dehydrogenase domain protein - - - 2.609e-199 638.0
BYD3_k127_7874028_1 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 482.0
BYD3_k127_7874028_2 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 395.0
BYD3_k127_7877084_0 Male sterility protein K08678 - 4.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 570.0
BYD3_k127_7877084_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 428.0
BYD3_k127_7877084_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 361.0
BYD3_k127_7877084_3 Transcriptional regulator K03566 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004037 320.0
BYD3_k127_7877084_4 PFAM Band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000619 253.0
BYD3_k127_7877084_5 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000004598 260.0
BYD3_k127_7877084_6 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000006514 201.0
BYD3_k127_7877084_7 Glycosyl transferase family 2 - - - 0.00000000000000000000402 98.0
BYD3_k127_7877084_8 GtrA-like protein - - - 0.00000000000003068 84.0
BYD3_k127_7877084_9 Recombinase zinc beta ribbon domain - - - 0.00000009365 57.0
BYD3_k127_7888822_0 PFAM ABC transporter related K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 396.0
BYD3_k127_7888822_1 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007047 390.0
BYD3_k127_7888822_2 Domain of unknown function (DUF1989) K09967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007604 294.0
BYD3_k127_7888822_3 - - - - 0.000008911 52.0
BYD3_k127_7896364_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 2.738e-262 820.0
BYD3_k127_7896364_1 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 3.754e-201 632.0
BYD3_k127_7896364_2 TIGRFAM methionine aminopeptidase, type I K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 463.0
BYD3_k127_7909141_0 Ring hydroxylating alpha subunit (catalytic domain) K00479 - - 4.61e-226 719.0
BYD3_k127_7909141_1 TIGRFAM glycine betaine L-proline ABC transporter, ATPase subunit K02000 - 3.6.3.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008615 533.0
BYD3_k127_7909141_2 oxidoreductase FAD NAD(P)-binding domain protein K05916,K07006,K21832 - 1.14.12.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 516.0
BYD3_k127_7909141_3 PFAM helix-turn-helix- domain containing protein, AraC type K21826 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 492.0
BYD3_k127_7909141_4 Binding-protein-dependent transport system inner membrane component K02001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 374.0
BYD3_k127_7909141_5 formaldehyde dehydrogenase K00148 - 1.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 336.0
BYD3_k127_7909141_6 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000572 251.0
BYD3_k127_7918817_0 ATP-binding region ATPase domain protein, histidine kinase A domain protein - - - 0.0 1285.0
BYD3_k127_7918817_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1028.0
BYD3_k127_7918817_2 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000003802 186.0
BYD3_k127_7918817_3 - - - - 0.0000000000000000000441 94.0
BYD3_k127_7918817_4 Exonuclease K02342 - 2.7.7.7 0.00000000000001068 78.0
BYD3_k127_7921745_0 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009635 572.0
BYD3_k127_7921745_1 Tfp pilus assembly protein FimV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000332 259.0
BYD3_k127_7932741_0 Pfam:HipA_N K07154 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 479.0
BYD3_k127_7932741_1 Outer Membrane Lipoprotein - GO:0008150,GO:0043900,GO:0050789,GO:0050794,GO:0065007,GO:1900190 - 0.0000000000000000000000000000000000000000000000000002125 189.0
BYD3_k127_7932741_2 transcriptional regulators - - - 0.000000000000000000000000000000000687 139.0
BYD3_k127_7932741_3 transcriptional regulators - - - 0.0001442 49.0
BYD3_k127_7959751_0 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000969 409.0
BYD3_k127_7959751_1 PFAM HI0933 family protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 334.0
BYD3_k127_7959751_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009946 312.0
BYD3_k127_7959751_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000248 61.0
BYD3_k127_7978154_0 - - - - 1.738e-257 812.0
BYD3_k127_7978154_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 305.0
BYD3_k127_7978154_2 Killing trait - - - 0.00000000000000000000000000000000000000003174 158.0
BYD3_k127_7978154_3 Killing trait - - - 0.00000000000000000000000000000000000000007233 152.0
BYD3_k127_7978154_4 Killing trait - - - 0.000000000000000000000000000000000000007935 146.0
BYD3_k127_7978154_5 - - - - 0.0000000000000000000000000000000000005303 142.0
BYD3_k127_7978154_6 Killing trait - - - 0.000000000000000000000000000000000000746 141.0
BYD3_k127_7978154_7 Killing trait - - - 0.000000000000000000000000006937 119.0
BYD3_k127_7978154_8 Killing trait - - - 0.00000000000001726 75.0
BYD3_k127_7979452_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0 1129.0
BYD3_k127_7979452_1 Protocatechuate 4,5-dioxygenase K04101 - 1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302 343.0
BYD3_k127_7979452_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000002624 229.0
BYD3_k127_7980448_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 6.709e-318 981.0
BYD3_k127_7980448_1 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 481.0
BYD3_k127_7980448_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 349.0
BYD3_k127_7980448_3 - - - - 0.00000000000000000000000000000000000002592 147.0
BYD3_k127_7980448_4 Domain of unknown function (DUF4212) - - - 0.000000000000000000000000000000000001358 142.0
BYD3_k127_7980448_5 Protein of unknown function, DUF485 - - - 0.0002845 44.0
BYD3_k127_8002052_0 PFAM CobN magnesium chelatase K02230 - 6.6.1.2 0.0 1176.0
BYD3_k127_8002052_1 Biopolymer transport - - - 0.000000000000000000000000000000000000000000000000000002128 217.0
BYD3_k127_8009529_0 E1-E2 ATPase K17686 - 3.6.3.54 0.0 1211.0
BYD3_k127_8009529_1 MreB/Mbl protein K04046 - - 8.82e-212 673.0
BYD3_k127_8009529_2 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 558.0
BYD3_k127_8009529_3 Aldose 1-epimerase K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 317.0
BYD3_k127_8009529_4 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K14160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 304.0
BYD3_k127_8009529_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006432 278.0
BYD3_k127_8009529_6 - - - - 0.0000000000000000000000000000000000000002364 158.0
BYD3_k127_80288_0 Type II/IV secretion system protein K02283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 604.0
BYD3_k127_80288_1 Pilus formation protein N terminal region K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 438.0
BYD3_k127_80288_10 TadE-like protein - - - 0.000000000000000000000000000007738 125.0
BYD3_k127_80288_11 TadE-like protein - - - 0.0000000000000000000000000002202 126.0
BYD3_k127_80288_12 Type IV leader peptidase family K02278 - 3.4.23.43 0.00000000000000000000003491 108.0
BYD3_k127_80288_13 - - - - 0.000000000000001544 87.0
BYD3_k127_80288_14 PFAM Flp Fap pilin component K02651 - - 0.000000000001625 69.0
BYD3_k127_80288_15 COG0457 FOG TPR repeat - - - 0.00000257 60.0
BYD3_k127_80288_2 AAA ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 421.0
BYD3_k127_80288_3 Type II secretion system (T2SS), protein F K12511 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006837 328.0
BYD3_k127_80288_4 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005322 301.0
BYD3_k127_80288_5 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001622 291.0
BYD3_k127_80288_6 pilus assembly protein K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007022 278.0
BYD3_k127_80288_7 Pilus assembly protein CpaB K02279 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007403 271.0
BYD3_k127_80288_8 Sel1 domain protein repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000009246 240.0
BYD3_k127_80288_9 Domain of unknown function (DUF4384) - - - 0.00000000000000000000000000000000000000000000000000000000003081 212.0
BYD3_k127_803583_0 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 503.0
BYD3_k127_803583_1 RNA ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000738 286.0
BYD3_k127_803583_2 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.0000000000000000000000000001342 114.0
BYD3_k127_8046701_0 PFAM Exonuclease, RNase T and DNA polymerase III K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004074 297.0
BYD3_k127_8046701_1 Alkylphosphonate utilization operon protein K06193 - - 0.00000000000000000000000000000000000000000000000000000000004855 207.0
BYD3_k127_8046701_2 PFAM NLP P60 protein - - - 0.0000000000000000000000000000000000000000000003564 169.0
BYD3_k127_8051200_0 osmosensitive K channel K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 300.0
BYD3_k127_8051200_1 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 291.0
BYD3_k127_8051200_2 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000622 172.0
BYD3_k127_8088137_0 Cytochrome c oxidase subunit K00376 - 1.7.2.4 0.0 1166.0
BYD3_k127_8088137_1 PFAM FMN-binding domain protein K19339 - - 0.0 1094.0
BYD3_k127_8088137_2 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000389 584.0
BYD3_k127_8088137_3 - - - - 0.000000000000000000000000000000000000000000000000003479 189.0
BYD3_k127_8088137_4 - - - - 0.000001723 55.0
BYD3_k127_8096768_0 heavy metal translocating P-type ATPase K01533 - 3.6.3.4 2.207e-307 961.0
BYD3_k127_8096768_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 3.017e-279 863.0
BYD3_k127_8096768_10 - - - - 0.000000000000000000000000000000000000000001434 158.0
BYD3_k127_8096768_11 PFAM AMP-dependent synthetase and ligase K18661 - - 0.000000000000000006205 83.0
BYD3_k127_8096768_12 PFAM Cbb3-type cytochrome oxidase component K00407 - - 0.000000000000002895 76.0
BYD3_k127_8096768_13 TIGRFAM cytochrome oxidase maturation protein, cbb3-type - - - 0.00000000000003191 74.0
BYD3_k127_8096768_14 FixH K09926 - - 0.00000000000009752 75.0
BYD3_k127_8096768_2 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 2.549e-239 749.0
BYD3_k127_8096768_3 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 1.217e-223 702.0
BYD3_k127_8096768_4 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 455.0
BYD3_k127_8096768_5 Transcriptional regulator crp fnr family K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 390.0
BYD3_k127_8096768_6 cytochrome c oxidase, cbb3-type, subunit II K00405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 346.0
BYD3_k127_8096768_7 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 304.0
BYD3_k127_8096768_8 PFAM isocitrate lyase and phosphorylmutase K01637 - 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001577 270.0
BYD3_k127_8096768_9 Universal stress protein - - - 0.00000000000000000000000000000000000000000000000000000000000652 211.0
BYD3_k127_8104162_0 peptidase U62, modulator of DNA gyrase K03592 - - 8.404e-231 725.0
BYD3_k127_8104162_1 Molybdenum cofactor synthesis domain K03831 - 2.7.7.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001878 339.0
BYD3_k127_8104162_2 Belongs to the UPF0307 family K09889 - - 0.00000000000000000000000000000000000000000000000000000000000000000001044 240.0
BYD3_k127_8104162_3 - - - - 0.000000000000000004747 91.0
BYD3_k127_8104162_4 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000003972 74.0
BYD3_k127_8104162_5 HupE UreJ protein K03192 - - 0.000001204 51.0
BYD3_k127_813621_0 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006129 540.0
BYD3_k127_813621_1 regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001686 280.0
BYD3_k127_813621_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005632 248.0
BYD3_k127_813621_3 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000003881 134.0
BYD3_k127_8147378_0 I - Lipid transport and metabolism - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 370.0
BYD3_k127_8147378_1 competence protein COMEC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000515 362.0
BYD3_k127_8153074_0 Proton-conducting membrane transporter - - - 2.267e-221 703.0
BYD3_k127_8153074_1 Na H antiporter, MnhB K05566 - - 0.00000000000000000000000000000000000000000000000000000000000000007059 232.0
BYD3_k127_8153074_2 Na H antiporter, MnhB K05566 - - 0.000000000000000000000000000000000000000000000000000000000000002242 221.0
BYD3_k127_8153074_3 Proton-conducting membrane transporter - - - 0.0000000000000000000000000000000000000000000000000000000000003771 217.0
BYD3_k127_8153074_4 COG1863 Multisubunit Na H antiporter MnhE subunit K05569 - - 0.00000000000000000000000000000000000000000000000000000000005184 208.0
BYD3_k127_8153074_5 COG1006 Multisubunit Na H antiporter, MnhC subunit K05567 - - 0.00000000000000000000000000000000000000002797 163.0
BYD3_k127_8153074_6 monovalent cation:proton antiporter activity K05571 - - 0.00000000000000000000000000000000000002809 145.0
BYD3_k127_8153074_7 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000000003088 129.0
BYD3_k127_8173122_0 glutamine synthetase K01915 - 6.3.1.2 4.892e-220 688.0
BYD3_k127_8173122_1 FAD binding domain K09471 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 606.0
BYD3_k127_8173122_10 Protein of unknown function (DUF1697) - - - 0.00000000000000000000000000000000000000000000000000000000000000000007086 235.0
BYD3_k127_8173122_11 Two component transcriptional regulator, LuxR family - - - 0.0000000000000000000000000000000000000000000000008364 181.0
BYD3_k127_8173122_2 Beta/Gamma crystallin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009121 528.0
BYD3_k127_8173122_3 Belongs to the arginase family K01480,K12255 - 3.5.3.11,3.5.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 518.0
BYD3_k127_8173122_4 aminotransferase class I and II K00375 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 507.0
BYD3_k127_8173122_5 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 499.0
BYD3_k127_8173122_6 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006194 460.0
BYD3_k127_8173122_7 Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 371.0
BYD3_k127_8173122_8 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000431 317.0
BYD3_k127_8173122_9 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001033 271.0
BYD3_k127_8182126_0 Chloride channel - - - 2.383e-194 619.0
BYD3_k127_8182126_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002759 275.0
BYD3_k127_8182126_2 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000004818 252.0
BYD3_k127_8182126_3 - - - - 0.0000000000000000000000000000000000000000006442 170.0
BYD3_k127_8182126_4 - - - - 0.0000000001046 63.0
BYD3_k127_8182126_5 Predicted metal-dependent hydrolase K07044 - - 0.00000002594 57.0
BYD3_k127_820677_0 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 523.0
BYD3_k127_820677_1 PFAM NnrS family protein K07234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008428 485.0
BYD3_k127_820677_2 Exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 402.0
BYD3_k127_820677_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000002562 209.0
BYD3_k127_820677_4 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000005846 145.0
BYD3_k127_8207139_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 2.619e-194 614.0
BYD3_k127_8207139_1 Predicted permease K07089 - - 8.968e-194 608.0
BYD3_k127_8207139_2 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 481.0
BYD3_k127_8207139_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 342.0
BYD3_k127_8207139_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 337.0
BYD3_k127_8207139_5 RNA polymerase sigma K03088 - - 0.000000000000000000000000000000000000000000000000000000000008062 213.0
BYD3_k127_8207139_6 Redoxin - - - 0.0000000000000000000000000000000000000000003794 166.0
BYD3_k127_8207139_7 redox-active disulfide protein 2 - - - 0.000000000000000000000000000000000001081 139.0
BYD3_k127_8207139_8 COG1393 Arsenate reductase and related proteins, glutaredoxin family K00537 - 1.20.4.1 0.0000000000000000000000000000000009934 131.0
BYD3_k127_8207946_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 1.271e-296 915.0
BYD3_k127_8207946_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 451.0
BYD3_k127_8207946_2 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 427.0
BYD3_k127_8207946_3 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 317.0
BYD3_k127_8207946_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000001271 168.0
BYD3_k127_8212134_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 469.0
BYD3_k127_8212134_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000591 298.0
BYD3_k127_8212134_2 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000000000000000264 209.0
BYD3_k127_8217528_0 ammonium transporter K03320,K06580 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 514.0
BYD3_k127_8217528_1 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 337.0
BYD3_k127_8217528_2 PFAM Hemerythrin HHE cation binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000008386 235.0
BYD3_k127_8217528_3 argininosuccinate lyase K01755 - 4.3.2.1 0.0000000000000000003554 87.0
BYD3_k127_8220198_0 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009892 529.0
BYD3_k127_8220198_1 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 501.0
BYD3_k127_8220198_2 Short-chain dehydrogenase reductase sdr K00019,K07535 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.30 0.0000000000000000000000000000000000003113 146.0
BYD3_k127_8281086_0 - - - - 0.00000000000000000000000000000000000000000006077 169.0
BYD3_k127_8281086_1 Belongs to the mannose-6-phosphate isomerase type 2 family K00971,K16011 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.7.7.13,5.3.1.8 0.00000000000000000000000000003833 118.0
BYD3_k127_8281086_2 Fic/DOC family - - - 0.00000000000000000000766 100.0
BYD3_k127_829557_0 Exonuclease K02342 - 2.7.7.7 8.046e-291 904.0
BYD3_k127_8299520_0 helix_turn_helix, arabinose operon control protein K02508 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 394.0
BYD3_k127_8299520_1 SnoaL-like domain K06893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001345 248.0
BYD3_k127_8299520_2 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000008382 229.0
BYD3_k127_8299520_3 helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000002057 72.0
BYD3_k127_8299520_4 Putative zinc-finger - - - 0.00000000000004175 73.0
BYD3_k127_8314883_0 formate hydrogenlyase subunit 3 multisubunit Na H antiporter, MnhD subunit K05568,K12137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 522.0
BYD3_k127_8314883_1 Putative serine dehydratase domain K01753 - 4.3.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 301.0
BYD3_k127_8314883_2 endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001083 245.0
BYD3_k127_8314883_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000001392 209.0
BYD3_k127_8314883_4 - - - - 0.000000000000000000000000000000000000000000000000000002061 198.0
BYD3_k127_8321497_0 Strictosidine synthase K10440 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 491.0
BYD3_k127_8321497_1 PFAM monooxygenase FAD-binding K05712 - 1.14.13.127 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000696 459.0
BYD3_k127_8321497_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000155 271.0
BYD3_k127_8321497_3 Protein of unknown function (DUF2783) - - - 0.000000000000000000008631 93.0
BYD3_k127_8363963_0 PFAM tRNA synthetase, class II (G, H, P and S) K01892 - 6.1.1.21 9.517e-205 644.0
BYD3_k127_8363963_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000586 420.0
BYD3_k127_8363963_2 Tetratricopeptide repeat-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001462 277.0
BYD3_k127_8408729_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1002.0
BYD3_k127_8408729_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K00836,K07250 - 2.6.1.19,2.6.1.22,2.6.1.76 2.144e-228 713.0
BYD3_k127_8408729_2 helix_turn_helix gluconate operon transcriptional repressor - - - 1.071e-218 687.0
BYD3_k127_8408729_3 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 311.0
BYD3_k127_842903_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions - - - 3.876e-229 716.0
BYD3_k127_842903_1 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 303.0
BYD3_k127_842903_2 Dienelactone hydrolase K07100 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001513 250.0
BYD3_k127_842903_3 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000001625 249.0
BYD3_k127_842903_4 PFAM Alcohol dehydrogenase K13953 - 1.1.1.1 0.0000000000000000000000000000000001449 133.0
BYD3_k127_843213_0 formate dehydrogenase, alpha subunit K00123,K22015 - 1.17.1.9,1.17.99.7 0.0 1162.0
BYD3_k127_843213_1 PFAM Extracellular ligand-binding receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008248 486.0
BYD3_k127_843213_2 Universal stress protein - - - 0.000000000000000000000000000000000000000000000000000003041 195.0
BYD3_k127_8439782_0 Belongs to the glutaminase family K01425 - 3.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000007446 256.0
BYD3_k127_8439782_1 Bacterial protein of unknown function (DUF924) - - - 0.000000000000000000000000000000000000000000000000000000000000000000003259 245.0
BYD3_k127_8450824_0 Prokaryotic cytochrome b561 K12262 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001546 246.0
BYD3_k127_8450824_1 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000009456 220.0
BYD3_k127_8450824_2 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000001265 162.0
BYD3_k127_8450824_3 phosphatase K19302 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0042221,GO:0044464,GO:0046677,GO:0050380,GO:0050896,GO:0071944 3.6.1.27 0.0000000000000000000000004136 113.0
BYD3_k127_8463732_0 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 445.0
BYD3_k127_8463732_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138,K18303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008789 327.0
BYD3_k127_8463732_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003475 263.0
BYD3_k127_8463732_3 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000429 250.0
BYD3_k127_8463732_4 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000008318 160.0
BYD3_k127_8463732_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138,K18303 - - 0.000000000000000000000000000000000003652 137.0
BYD3_k127_8463732_6 - - - - 0.000000000000000000000000000000003855 138.0
BYD3_k127_8463732_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000007003 83.0
BYD3_k127_8466414_0 PFAM NAD dependent epimerase dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004988 501.0
BYD3_k127_8466414_1 PFAM Uncharacterised protein family (UPF0153) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002467 249.0
BYD3_k127_8466414_2 Putative regulatory protein - - - 0.000000000000000000000000000000001069 130.0
BYD3_k127_8466414_3 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000001804 61.0
BYD3_k127_8471205_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 577.0
BYD3_k127_8471205_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 361.0
BYD3_k127_8471205_2 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000000000002981 155.0
BYD3_k127_8475432_0 Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and or methyl galactoside import. Responsible for energy coupling to the transport system K10441 - 3.6.3.17 2.048e-276 863.0
BYD3_k127_8475432_1 PFAM Mandelate racemase muconate lactonizing K18334 - 4.2.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 586.0
BYD3_k127_8475432_2 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 568.0
BYD3_k127_8475432_3 PFAM fumarylacetoacetate (FAA) hydrolase K16856,K18336 - 4.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 556.0
BYD3_k127_8475432_4 PFAM periplasmic binding protein LacI transcriptional regulator K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009828 550.0
BYD3_k127_8475432_5 Bacterial transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000874 442.0
BYD3_k127_8475432_6 PFAM Short-chain dehydrogenase reductase SDR K18335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 430.0
BYD3_k127_8476431_0 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000006236 218.0
BYD3_k127_8490666_0 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K05934,K13541 - 2.1.1.131,3.7.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008764 558.0
BYD3_k127_8490666_1 Probable cobalt transporter subunit (CbtA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 398.0
BYD3_k127_8490666_2 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000001962 217.0
BYD3_k127_8490666_3 Protein of unknown function (DUF1304) K08987 - - 0.0000000000000000000000000000001972 126.0
BYD3_k127_8490666_5 Cobalamin synthesis G C-terminus K02189 - 3.7.1.12 0.0000000000008881 68.0
BYD3_k127_8532790_0 PFAM extracellular solute-binding protein family 1 K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 554.0
BYD3_k127_8532790_1 PFAM binding-protein-dependent transport systems inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 492.0
BYD3_k127_8532790_2 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 462.0
BYD3_k127_8543083_0 PFAM peptidase M3A and M3B, thimet oligopeptidase F K01414 - 3.4.24.70 0.0 1090.0
BYD3_k127_8543083_1 PFAM Glutaredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000004131 241.0
BYD3_k127_8543083_2 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000001381 153.0
BYD3_k127_8543083_3 CRS1_YhbY K07574 - - 0.00000000000000000000000000003269 117.0
BYD3_k127_8552617_0 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 395.0
BYD3_k127_8552617_1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 288.0
BYD3_k127_8552617_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000005881 83.0
BYD3_k127_8562645_0 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 514.0
BYD3_k127_8562645_1 phosphonate ABC transporter, inner membrane subunit K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 447.0
BYD3_k127_8562645_2 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 361.0
BYD3_k127_8562645_3 Amidohydrolase family K06162 - 3.6.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009634 364.0
BYD3_k127_8562645_4 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 319.0
BYD3_k127_8562645_5 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004385 307.0
BYD3_k127_8562645_6 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004817 308.0
BYD3_k127_8562645_7 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009383 314.0
BYD3_k127_8562645_8 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 293.0
BYD3_k127_8588595_0 Tannase and feruloyl esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 416.0
BYD3_k127_8588595_1 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 322.0
BYD3_k127_8588595_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000007241 212.0
BYD3_k127_8657978_0 glutamate--cysteine ligase K01919 - 6.3.2.2 9.561e-239 743.0
BYD3_k127_8657978_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000388 220.0
BYD3_k127_8662215_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 5.644e-218 679.0
BYD3_k127_8662215_1 Type IV pili methyl-accepting chemotaxis transducer N-term - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 344.0
BYD3_k127_8662215_2 nitrite sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein K00362,K05297 - 1.18.1.1,1.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000111 263.0
BYD3_k127_8662215_3 TIGRFAM nitrite reductase NAD(P)H , small subunit K00363 - 1.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000001262 233.0
BYD3_k127_8678304_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008672 477.0
BYD3_k127_8678304_1 gntR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001753 246.0
BYD3_k127_8678304_2 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.000000000000000000000000000000000000000000000000000005763 194.0
BYD3_k127_8684841_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 1e-323 997.0
BYD3_k127_8684841_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.867e-262 812.0
BYD3_k127_8684841_10 cheY-homologous receiver domain - - - 0.0001823 50.0
BYD3_k127_8684841_2 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 566.0
BYD3_k127_8684841_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009661 548.0
BYD3_k127_8684841_4 PFAM Patatin K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 462.0
BYD3_k127_8684841_5 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 364.0
BYD3_k127_8684841_6 Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively K01243 - 3.2.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 323.0
BYD3_k127_8684841_7 Dihydrodipicolinate reductase, C-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000881 224.0
BYD3_k127_8684841_8 HDOD domain - - - 0.000000000000000000000000000000000000000003296 166.0
BYD3_k127_8684841_9 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000159 133.0
BYD3_k127_874195_0 transcriptional regulator, Rrf2 family K13771 - - 0.0000000000000000000000000000000000000000000000000000889 192.0
BYD3_k127_874195_1 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000001428 173.0
BYD3_k127_874195_2 - - - - 0.00000000000000000000000000000000000002195 149.0
BYD3_k127_874195_3 PFAM thiamineS protein - - - 0.00000000000000000000000002767 108.0
BYD3_k127_87597_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 514.0
BYD3_k127_87597_1 Belongs to the CarB family K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 422.0
BYD3_k127_87597_2 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008208 402.0
BYD3_k127_87597_3 Two component transcriptional regulator, LuxR family K13041 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 365.0
BYD3_k127_87597_4 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 347.0
BYD3_k127_87597_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000557 276.0
BYD3_k127_87597_6 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000002192 268.0
BYD3_k127_87597_7 Domain of unknown function (DUF4149) - - - 0.0000000000000000000000000000000000006853 145.0
BYD3_k127_87597_8 PFAM ATP-binding region, ATPase domain protein - - - 0.0000000000003019 70.0
BYD3_k127_8763316_0 PAS domain K13924 - 2.1.1.80,3.1.1.61 4.695e-300 942.0
BYD3_k127_8763316_1 PFAM AMP-dependent synthetase and ligase K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 497.0
BYD3_k127_8763316_2 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009378 452.0
BYD3_k127_8763316_3 SMART HTH transcriptional regulator, Crp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001651 249.0
BYD3_k127_8763316_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K00575 - 2.1.1.80 0.000000000000119 81.0
BYD3_k127_8764717_0 SCO1/SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000001609 239.0
BYD3_k127_8764717_1 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000000000000000000000000001055 168.0
BYD3_k127_8764717_2 - Catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - 0.00000000000951 76.0
BYD3_k127_8764717_3 Protein of unknown function (DUF2946) - - - 0.0000000003111 64.0
BYD3_k127_8781929_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 5.024e-223 696.0
BYD3_k127_8786901_0 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 451.0
BYD3_k127_8786901_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 436.0
BYD3_k127_8786901_2 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005908 288.0
BYD3_k127_8786901_3 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000005084 242.0
BYD3_k127_8786901_4 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000000000000000000000000101 203.0
BYD3_k127_8788180_0 COG2346, Truncated hemoglobins K06886,K07006 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009185 297.0
BYD3_k127_8788180_1 transcription factor binding - - - 0.0000000000000000000000000000000000000000000000000000000000005455 214.0
BYD3_k127_8788180_2 PFAM Dual specificity protein phosphatase K14165 - 3.1.3.16,3.1.3.48 0.000000000000000000000000000000000000000000000000000000002463 207.0
BYD3_k127_8788180_3 Roadblock/LC7 domain K07131 - - 0.0000000000000000000000000000004823 132.0
BYD3_k127_8800531_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 408.0
BYD3_k127_8800531_1 Methionine synthase K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 316.0
BYD3_k127_8825618_0 PFAM Ornithine cyclodeaminase mu-crystallin K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006896 539.0
BYD3_k127_8825618_1 Belongs to the arginase family K01476,K01480,K12255,K18459 - 3.5.3.1,3.5.3.11,3.5.3.17,3.5.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 511.0
BYD3_k127_8825618_2 PFAM glucose-methanol-choline oxidoreductase K00108 - 1.1.99.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 471.0
BYD3_k127_8825618_3 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 450.0
BYD3_k127_8825618_4 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 404.0
BYD3_k127_8825618_5 PFAM ABC transporter related K02028,K09972 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004623 411.0
BYD3_k127_8825618_6 Belongs to the bacterial solute-binding protein 3 family K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 402.0
BYD3_k127_8825618_7 helix_turn_helix ASNC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001781 247.0
BYD3_k127_8833854_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 511.0
BYD3_k127_8833854_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 304.0
BYD3_k127_8858941_0 Histidine kinase internal region K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 449.0
BYD3_k127_8858941_1 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 350.0
BYD3_k127_8858941_2 PFAM response regulator receiver K08083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006999 325.0
BYD3_k127_8858941_3 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.0000000000000000000000000000007144 121.0
BYD3_k127_8888409_0 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 3.189e-226 716.0
BYD3_k127_8888409_1 Endonuclease exonuclease phosphatase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003278 289.0
BYD3_k127_8888409_2 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000008507 235.0
BYD3_k127_889909_0 Nif-specific regulatory protein K02584 - - 1.742e-269 844.0
BYD3_k127_889909_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 6.022e-231 724.0
BYD3_k127_889909_2 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001753 252.0
BYD3_k127_889909_3 Required for insertion of 4Fe-4S clusters K15724 - - 0.00000000000000000000000000000000000000000000000000000009852 204.0
BYD3_k127_889909_4 AraC-binding-like domain - - - 0.00000000000000000000000000000000002711 143.0
BYD3_k127_8902448_0 CHAT domain - - - 0.0 1570.0
BYD3_k127_8902448_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03387 - - 0.00000000000000000000000003997 108.0
BYD3_k127_890418_0 Belongs to the ParA family K03609 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 486.0
BYD3_k127_890418_1 LysR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 400.0
BYD3_k127_890418_2 Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization K03610 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 298.0
BYD3_k127_890418_3 PFAM UbiA prenyltransferase K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004017 272.0
BYD3_k127_890418_4 SnoaL-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000002124 223.0
BYD3_k127_890418_5 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.000000000000000000000000000000000000000000003877 168.0
BYD3_k127_890418_6 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.00000000000000000000000000000000000001082 153.0
BYD3_k127_8905088_0 PFAM extracellular solute-binding protein family 1 K02027,K10227 - - 3.353e-269 831.0
BYD3_k127_8905088_1 PFAM PfkB domain protein K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004897 366.0
BYD3_k127_8905088_2 PFAM binding-protein-dependent transport systems inner membrane component K10228 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006634 249.0
BYD3_k127_8905088_3 TIGRFAM Carbohydrate kinase, thermoresistant glucokinase K00851 - 2.7.1.12 0.00000000000000000000000000000000000000000000000000000000000000001508 227.0
BYD3_k127_8905088_4 Alcohol dehydrogenase zinc-binding domain protein K00098 - 1.1.1.264 0.0000000000000002657 79.0
BYD3_k127_8915309_0 PFAM Tannase and feruloyl esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000762 511.0
BYD3_k127_8915309_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 498.0
BYD3_k127_8915309_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009856 287.0
BYD3_k127_8915309_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003824 256.0
BYD3_k127_8915309_4 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.00000000000000000000000000000000000000000000000000000000000004056 222.0
BYD3_k127_8915309_5 Belongs to the transcriptional regulatory Fis family K03557 - - 0.0000000000000000000000000005924 119.0
BYD3_k127_8915309_6 Transcriptional Regulator, AraC family - - - 0.000000000004935 76.0
BYD3_k127_8936442_0 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 513.0
BYD3_k127_8936442_1 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009151 447.0
BYD3_k127_8936442_2 PFAM acyl-CoA dehydrogenase domain protein K20035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 320.0
BYD3_k127_8936442_3 PFAM Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 319.0
BYD3_k127_8939102_0 PFAM acyl-CoA dehydrogenase domain protein K00248 - 1.3.8.1 0.0 1041.0
BYD3_k127_8939102_1 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000094 418.0
BYD3_k127_8939102_2 PFAM helix-turn-helix- domain containing protein, AraC type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 359.0
BYD3_k127_8939102_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000004765 212.0
BYD3_k127_8939102_4 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000003948 85.0
BYD3_k127_8942944_0 Extracellular solute-binding protein K17321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 390.0
BYD3_k127_8942944_1 binding-protein-dependent transport systems inner membrane component K17323 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009524 379.0
BYD3_k127_8942944_2 Predicted small integral membrane protein (DUF2160) - - - 0.00000000000000000000000000000000000000000000000003333 181.0
BYD3_k127_8963668_0 Putative Ig domain - - - 8.531e-277 883.0
BYD3_k127_8963668_1 Oxidoreductase K03863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000634 377.0
BYD3_k127_8963668_10 Alanine racemase, N-terminal domain - - - 0.0000000000000001941 78.0
BYD3_k127_8963668_2 cytochrome p450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 306.0
BYD3_k127_8963668_3 Phage Tail Collar Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008477 286.0
BYD3_k127_8963668_4 Microcystin-dependent protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007538 281.0
BYD3_k127_8963668_5 Microcystin-dependent protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002978 257.0
BYD3_k127_8963668_6 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000001452 202.0
BYD3_k127_8963668_7 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000003347 188.0
BYD3_k127_8963668_8 - - - - 0.00000000000000000000000000000007937 131.0
BYD3_k127_8963668_9 SCP-2 sterol transfer family - - - 0.00000000000000000002657 95.0
BYD3_k127_8973781_0 PFAM Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 404.0
BYD3_k127_8973781_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 344.0
BYD3_k127_8973781_2 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000002064 193.0
BYD3_k127_8973781_3 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000173 172.0
BYD3_k127_8992585_0 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004096 571.0
BYD3_k127_8992585_1 AraC-like ligand binding domain - - - 0.000000000000000000000000359 115.0
BYD3_k127_8992585_2 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000001109 88.0
BYD3_k127_9004460_0 PFAM TrkA-N domain protein K03499 - - 7.205e-247 769.0
BYD3_k127_9004460_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 8.102e-213 671.0
BYD3_k127_9004460_2 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 575.0
BYD3_k127_9004460_3 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004568 539.0
BYD3_k127_9009238_0 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 610.0
BYD3_k127_9009238_1 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 363.0
BYD3_k127_9009238_2 Zinc iron permease K16267 - - 0.0000000000000000000000000000000000000000000362 162.0
BYD3_k127_9021939_0 TIGRFAM penicillin-binding protein, 1A family K05366 - 2.4.1.129,3.4.16.4 0.0 1111.0
BYD3_k127_9021939_1 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 586.0
BYD3_k127_9021939_2 Belongs to the frataxin family K06202 - - 0.0000000000000000000000000000000000000000000000609 171.0
BYD3_k127_9021939_3 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000003899 48.0
BYD3_k127_9042857_0 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 498.0
BYD3_k127_9042857_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000003677 220.0
BYD3_k127_9042857_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000000000000000000000000000000007525 217.0
BYD3_k127_906865_0 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 519.0
BYD3_k127_906865_1 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 426.0
BYD3_k127_906865_2 Protein-disulfide isomerase K07396 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 285.0
BYD3_k127_906865_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000002083 165.0
BYD3_k127_906865_4 - - - - 0.00000000000000000000000000002571 119.0
BYD3_k127_906865_5 Xylose isomerase - - - 0.000000000000000000000001821 102.0
BYD3_k127_944708_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 8.475e-208 649.0
BYD3_k127_944708_1 prohibitin homologues - - - 3.328e-203 637.0
BYD3_k127_948953_0 PFAM regulatory protein LysR K14657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006929 358.0
BYD3_k127_948953_1 ErfK ybiS ycfS ynhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000004078 228.0
BYD3_k127_948953_2 Protein of unknown function (DUF1302) - - - 0.000000000000000000000000000000000000000001439 162.0
BYD3_k127_948953_3 - - - - 0.000000000000000000000000000000000000000001747 172.0
BYD3_k127_948953_4 glutathione transferase activity - - - 0.00000000000000000001515 95.0
BYD3_k127_954781_0 FtsX-like permease family K02004 - - 5.11e-288 897.0
BYD3_k127_954781_1 TIGRFAM Formate dehydrogenase, gamma subunit K00127 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 558.0
BYD3_k127_954781_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 409.0
BYD3_k127_954781_3 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 362.0
BYD3_k127_954781_4 4Fe-4S binding domain K00124,K07307 - - 0.00000000000000000000000001562 108.0
BYD3_k127_954781_5 - - - - 0.000000000000000000114 93.0
BYD3_k127_954781_6 - - - - 0.0000000002854 70.0
BYD3_k127_972226_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003728 539.0
BYD3_k127_972226_1 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 382.0
BYD3_k127_972226_2 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004486 301.0
BYD3_k127_972226_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000001777 220.0
BYD3_k127_976296_0 histidine kinase HAMP region domain protein K07638 - 2.7.13.3 1.524e-196 625.0
BYD3_k127_976296_1 Two component transcriptional regulator, winged helix family K02483,K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 431.0
BYD3_k127_976296_2 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003991 421.0
BYD3_k127_976296_3 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 293.0
BYD3_k127_976296_4 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000002252 253.0
BYD3_k127_976296_5 Protein of unknown function (DUF541) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005143 256.0
BYD3_k127_976296_6 hydrolase of the alpha K07019 - - 0.0000002452 61.0
BYD3_k127_980805_0 UTRA K02043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009497 354.0
BYD3_k127_980805_1 Hexapeptide repeat of succinyl-transferase K00661 - 2.3.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 329.0
BYD3_k127_980805_2 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 316.0
BYD3_k127_980805_3 Protein of unknown function (DUF1045) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001692 269.0
BYD3_k127_980805_4 Phosphonate C-P lyase system protein PhnG K06166 - 2.7.8.37 0.000000000000000000000000000000000000000000000000000000000000000006691 229.0
BYD3_k127_980805_5 Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP) K00758,K05774 - 2.4.2.4,2.7.4.23 0.000000000000000000000000000000000000000000000000000000007412 206.0
BYD3_k127_980805_6 - - - - 0.0000000000000000001321 94.0
BYD3_k127_982331_0 Lytic transglycosylase catalytic K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 609.0
BYD3_k127_982331_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K18306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003822 426.0
BYD3_k127_982331_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138,K18307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 373.0
BYD3_k127_982331_3 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 366.0
BYD3_k127_982331_4 PFAM Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004765 351.0
BYD3_k127_982331_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000008056 258.0
BYD3_k127_982331_6 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000004435 227.0
BYD3_k127_987133_0 ATPase associated with various cellular activities, AAA_3 K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 554.0
BYD3_k127_987133_1 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 492.0
BYD3_k127_987133_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 446.0
BYD3_k127_987133_3 PFAM monooxygenase FAD-binding K00480,K22270 - 1.14.13.1,1.14.13.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 391.0
BYD3_k127_987133_4 peptidase S1 and S6, chymotrypsin Hap - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 353.0
BYD3_k127_987133_5 aconitate hydratase K01681 - 4.2.1.3 0.00000000000003324 72.0
BYD3_k127_987228_0 Flavocytochrome c sulphide dehydrogenase, flavin-binding K05301,K17218 - 1.8.2.1,1.8.5.4 2.756e-213 675.0
BYD3_k127_987228_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000001864 176.0
BYD3_k127_987228_2 cytochrome - - - 0.000000000000000000000000000001561 123.0
BYD3_k127_987228_3 DNA-binding transcription factor activity - - - 0.000000000000000008809 83.0
BYD3_k127_997041_0 PFAM Lytic transglycosylase catalytic K08309 - - 2.126e-246 778.0
BYD3_k127_997041_1 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 4.559e-196 624.0
BYD3_k127_997041_10 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 321.0
BYD3_k127_997041_11 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002293 273.0
BYD3_k127_997041_12 NIPSNAP - - - 0.000000000000000000000000000000000000000000000000000000002168 200.0
BYD3_k127_997041_13 Metal-sensitive transcriptional repressor - - - 0.0000000000000000000000000000116 122.0
BYD3_k127_997041_14 TfoX N-terminal domain K07343 - - 0.00000000000000000000000000008007 121.0
BYD3_k127_997041_15 Protein of unknown function (DUF2917) - - - 0.0000000000000000000000005074 111.0
BYD3_k127_997041_2 Transcriptional regulator K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009047 463.0
BYD3_k127_997041_3 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 432.0
BYD3_k127_997041_4 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004584 390.0
BYD3_k127_997041_5 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 349.0
BYD3_k127_997041_6 permeases of the drug metabolite transporter (Dmt) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 344.0
BYD3_k127_997041_7 PFAM regulatory protein TetR K09017 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 325.0
BYD3_k127_997041_8 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009486 314.0
BYD3_k127_997041_9 phenazine biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 309.0
BYD3_k127_997144_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 9.543e-204 643.0
BYD3_k127_997144_1 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000002537 207.0
BYD3_k127_997144_2 Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations K01241 - 3.2.2.4 0.0000000000000000000000000009967 112.0
BYD3_k127_997144_3 Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations K01241 - 3.2.2.4 0.00000000000000000000000004288 121.0