Overview

ID MAG00173
Name BYDH2_bin.3
Sample SMP0005
Taxonomy
Kingdom Bacteria
Phylum Patescibacteriota
Class Patescibacteriia
Order UBA11705
Family UBA11705
Genus
Species
Assembly information
Completeness (%) 87.88
Contamination (%) 2.64
GC content (%) 48.0
N50 (bp) 6,335
Genome size (bp) 1,031,816

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes757

Gene name Description KEGG GOs EC E-value Score Sequence
BYDH2_k127_10018665_0 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000007249 140.0
BYDH2_k127_10018665_1 Associated with various cellular activities - - - 0.0000000000000000000000000004449 132.0
BYDH2_k127_10047632_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1015.0
BYDH2_k127_10047632_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000004863 197.0
BYDH2_k127_10047632_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000008599 186.0
BYDH2_k127_10047632_3 SWI complex, BAF60b domains - - - 0.000000000000000000000000002242 113.0
BYDH2_k127_10089355_0 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000004701 163.0
BYDH2_k127_10089355_1 DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.0000000000000000000000000000000000002532 154.0
BYDH2_k127_10089355_2 Fibronectin type III domain - - - 0.0000000000000000000000004477 118.0
BYDH2_k127_10117692_0 SMC proteins Flexible Hinge Domain K03529 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000000001439 200.0
BYDH2_k127_10189033_0 Zn-dependent hydrolases of the - - - 0.0000000000000000000000000000001822 131.0
BYDH2_k127_10189033_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000000000000002044 122.0
BYDH2_k127_10247207_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 2.379e-221 694.0
BYDH2_k127_10247207_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 2.201e-204 647.0
BYDH2_k127_10247207_10 PFAM Colicin V production protein K03558 - - 0.0000001529 59.0
BYDH2_k127_10247207_11 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.00002705 49.0
BYDH2_k127_10247207_12 - - - - 0.0001318 46.0
BYDH2_k127_10247207_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000001715 226.0
BYDH2_k127_10247207_3 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000004241 222.0
BYDH2_k127_10247207_4 TIGRFAM hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000004265 180.0
BYDH2_k127_10247207_5 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000001951 170.0
BYDH2_k127_10247207_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000008699 106.0
BYDH2_k127_10247207_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000008224 93.0
BYDH2_k127_10247207_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000002194 72.0
BYDH2_k127_10247207_9 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000949 75.0
BYDH2_k127_1024844_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000001152 216.0
BYDH2_k127_1024844_1 Protein of unknown function (DUF4012) - - - 0.00000000000000000000000003779 126.0
BYDH2_k127_1024844_2 Conserved repeat domain - - - 0.000002163 59.0
BYDH2_k127_1024844_3 - - - - 0.0001966 52.0
BYDH2_k127_10333865_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008846 569.0
BYDH2_k127_10343196_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 389.0
BYDH2_k127_10343196_1 transport system, permease component K01992 - - 0.00000000000000000000000000000000000002317 154.0
BYDH2_k127_10343196_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000006207 151.0
BYDH2_k127_10343196_3 Domain of unknown function (DUF378) K09779 - - 0.0000000000000001418 83.0
BYDH2_k127_10343196_4 lipid kinase activity - - - 0.0000000000001455 82.0
BYDH2_k127_10343196_5 domain, Protein - - - 0.0000000000003034 83.0
BYDH2_k127_10343196_6 protein kinase activity - - - 0.00000000001098 73.0
BYDH2_k127_10343196_8 protein kinase activity - - - 0.0002141 51.0
BYDH2_k127_10354924_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 3.124e-288 912.0
BYDH2_k127_10354924_1 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000000000000000000000000000000005925 215.0
BYDH2_k127_10354924_2 Ham1 family - - - 0.000000000000000000000000000000000006431 143.0
BYDH2_k127_10354924_3 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000003369 130.0
BYDH2_k127_10354924_4 YibE F family protein - - - 0.0000000001372 70.0
BYDH2_k127_10354924_5 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.0000004717 55.0
BYDH2_k127_10354924_6 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0003237 50.0
BYDH2_k127_10387312_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 1.794e-252 786.0
BYDH2_k127_10422857_0 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000003723 227.0
BYDH2_k127_10440485_0 Fumarylacetoacetate hydrolase K01555 GO:0003674,GO:0003824,GO:0004334,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016787,GO:0016822,GO:0016823,GO:0017144,GO:0019439,GO:0019752,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000053 278.0
BYDH2_k127_10440485_1 histidyl-tRNA synthetase - - - 0.0000000000000000000000000000000000000000000001013 177.0
BYDH2_k127_10449338_0 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000007913 209.0
BYDH2_k127_10449338_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000001046 190.0
BYDH2_k127_10449338_2 Divergent PAP2 family K09775 - - 0.000000000000000000002493 99.0
BYDH2_k127_10449338_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000001086 50.0
BYDH2_k127_10511965_0 homoserine kinase activity K02204,K13059 - 2.7.1.162,2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 351.0
BYDH2_k127_10511965_1 PFAM Methionine sulfoxide reductase B K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000003094 194.0
BYDH2_k127_10511965_2 auxin-activated signaling pathway K00101,K07088,K13936 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.1.2.3 0.00000000000000000000000000000000000000000038 169.0
BYDH2_k127_10511965_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000004086 127.0
BYDH2_k127_10511965_4 ECF sigma factor K03088 - - 0.000000000000000000000003781 108.0
BYDH2_k127_10534979_0 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0006355,GO:0006508,GO:0006515,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 300.0
BYDH2_k127_10534979_1 YmdB-like protein K02029,K02030,K09769 GO:0003674,GO:0003824,GO:0004112,GO:0004113,GO:0008081,GO:0016787,GO:0016788,GO:0042578 - 0.00000000000000000000000000000000000000000000000000000000000003977 224.0
BYDH2_k127_10534979_2 PFAM VanW family protein - - - 0.000000000000000000000000000000000000000000000000000001067 214.0
BYDH2_k127_10534979_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000001354 83.0
BYDH2_k127_10534979_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000001389 80.0
BYDH2_k127_10534979_5 Protein of unknown function (DUF3006) - - - 0.000001783 52.0
BYDH2_k127_1055683_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007317 519.0
BYDH2_k127_1055683_1 Membrane K06384 - - 0.00000005849 64.0
BYDH2_k127_10595930_0 Magnesium chelatase, subunit ChlI C-terminal K06400,K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005723 292.0
BYDH2_k127_10595930_1 Flavoprotein - - - 0.000000000000000000000003112 105.0
BYDH2_k127_10595930_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000102 75.0
BYDH2_k127_10595930_3 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression K06204 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000037 61.0
BYDH2_k127_10618838_0 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 309.0
BYDH2_k127_10618838_1 Glycosyl transferase family 1 - - - 0.0000000000000000000000000000000000000000000000003847 186.0
BYDH2_k127_10618838_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000006476 175.0
BYDH2_k127_10618838_3 PFAM Creatininase K01470 - 3.5.2.10 0.00000000000004151 75.0
BYDH2_k127_10618838_4 Tetratricopeptide repeat - - - 0.0002084 52.0
BYDH2_k127_10719925_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007288 273.0
BYDH2_k127_10719925_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000006966 172.0
BYDH2_k127_10721188_0 Type IV secretory pathway, VirB4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 365.0
BYDH2_k127_10721188_1 ComF family K02242 - - 0.000000000000000000000000000001559 129.0
BYDH2_k127_10721188_2 multi-organism process - - - 0.000000000003404 76.0
BYDH2_k127_10782508_0 PFAM GatB Yqey domain protein K09117 - - 0.000000000000000000000003655 108.0
BYDH2_k127_10782508_1 PFAM IPT TIG domain - - - 0.0000000001378 77.0
BYDH2_k127_10782508_2 - - - - 0.00004182 59.0
BYDH2_k127_10783623_0 ABC transporter transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 396.0
BYDH2_k127_10800285_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 355.0
BYDH2_k127_11046136_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000001656 153.0
BYDH2_k127_11046136_1 Involved in formation and maintenance of cell shape K03570 - - 0.00000005125 57.0
BYDH2_k127_11056234_0 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000002579 182.0
BYDH2_k127_11056234_1 phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000001847 181.0
BYDH2_k127_11056234_2 - - - - 0.00000000000000000000000000000000029 138.0
BYDH2_k127_11056234_3 Domain of unknown function (DUF4173) - - - 0.00000000000000000000001887 115.0
BYDH2_k127_11062361_0 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000003496 246.0
BYDH2_k127_11070025_0 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 341.0
BYDH2_k127_11070025_1 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.0003385 50.0
BYDH2_k127_11090002_0 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000002433 187.0
BYDH2_k127_11090002_1 HD domain - - - 0.0000000000000000000000000000001363 124.0
BYDH2_k127_11090002_2 Acetyltransferase, gnat family - - - 0.000000000138 69.0
BYDH2_k127_11090002_3 PFAM ABC transporter related K01990 - - 0.000000001617 61.0
BYDH2_k127_11097800_0 Transmembrane protein 43 - - - 0.0000000000000000000000000000000000000000000000000000000000000000009985 244.0
BYDH2_k127_11097800_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000001121 234.0
BYDH2_k127_11097800_2 L-threonylcarbamoyladenylate synthase K07566 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000008411 213.0
BYDH2_k127_11097800_3 tyrosine recombinase XerC K03733,K04763 - - 0.000000000000000000000000000000000000000000000008702 184.0
BYDH2_k127_11097800_4 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000007977 115.0
BYDH2_k127_11097800_5 endonuclease containing a URI domain K07461 - - 0.0000000000000000000000006241 112.0
BYDH2_k127_11097800_6 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000002493 99.0
BYDH2_k127_11097800_7 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000001877 95.0
BYDH2_k127_11097800_8 Belongs to the UPF0235 family K09131 - - 0.00000001525 60.0
BYDH2_k127_11097800_9 23S rRNA-intervening sequence protein K13010 - 2.6.1.102 0.0000007867 57.0
BYDH2_k127_11181662_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 5.308e-250 792.0
BYDH2_k127_11255545_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 428.0
BYDH2_k127_11255545_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000002292 137.0
BYDH2_k127_11296726_0 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000003441 259.0
BYDH2_k127_11296726_1 TIGRFAM autotransporter-associated beta strand repeat protein - - - 0.00000000000000000000000000000000000006111 155.0
BYDH2_k127_11296726_2 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.0000000000000000000000000000000004332 135.0
BYDH2_k127_11296726_3 CDP-alcohol phosphatidyltransferase K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000002177 72.0
BYDH2_k127_11329153_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 493.0
BYDH2_k127_11329153_1 Iron/manganese superoxide dismutases, alpha-hairpin domain K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000004046 230.0
BYDH2_k127_11329153_2 PFAM Peptidase M23 K21471 - - 0.00000000000000000000000008346 122.0
BYDH2_k127_1269496_0 PFAM ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 343.0
BYDH2_k127_1269496_1 tRNA synthetases class II (D, K and N) K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008641 276.0
BYDH2_k127_1269496_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000002129 119.0
BYDH2_k127_1269496_3 transport system permease component K01992 - - 0.000000000000000003485 94.0
BYDH2_k127_1269496_4 transport system, permease component K01992 - - 0.000000000003611 77.0
BYDH2_k127_1269496_5 Psort location Cytoplasmic, score - - - 0.00000065 51.0
BYDH2_k127_1269496_6 DUF218 domain - - - 0.0005631 49.0
BYDH2_k127_127175_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.293e-215 693.0
BYDH2_k127_1307212_0 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000008604 200.0
BYDH2_k127_1370990_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000001223 234.0
BYDH2_k127_1370990_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000001466 199.0
BYDH2_k127_1370990_2 Extradiol ring-cleavage dioxygenase, class III K06990,K09141 - - 0.0000000000000000000000000000000000000000006234 167.0
BYDH2_k127_1370990_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000007954 130.0
BYDH2_k127_1370990_4 maturation of the outermost layer of the spore K06322 - - 0.00001003 50.0
BYDH2_k127_1378724_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003644 270.0
BYDH2_k127_1378724_1 HIT domain - - - 0.0000000000000000000000000000000000000004424 154.0
BYDH2_k127_1378724_2 Thioredoxin - - - 0.0000000000000000000000000000000000004065 150.0
BYDH2_k127_1378724_3 Vitamin K epoxide reductase family - - - 0.0000000000000001683 87.0
BYDH2_k127_1378724_5 - - - - 0.00006289 46.0
BYDH2_k127_1493130_0 phosphoenolpyruvate synthase K01007 - 2.7.9.2 1.291e-255 811.0
BYDH2_k127_1493130_1 Amino acid permease - - - 0.000000000000000000001093 104.0
BYDH2_k127_1493130_2 Belongs to the pyruvate kinase family K00873 GO:0001871,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006116,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0030246,GO:0030247,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:2001065 2.7.1.40 0.0000000000000000002486 92.0
BYDH2_k127_1495299_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 533.0
BYDH2_k127_1509774_0 Heavy metal transport detoxification protein K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003477 284.0
BYDH2_k127_1570011_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 311.0
BYDH2_k127_1570011_1 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000003047 92.0
BYDH2_k127_1570011_2 chlorophyll binding - - - 0.00000000000001651 81.0
BYDH2_k127_1570011_3 Diacylglycerol kinase K00901 - 2.7.1.107 0.00000000001368 70.0
BYDH2_k127_1570011_4 Metallo-peptidase family M12B Reprolysin-like - - - 0.0006795 51.0
BYDH2_k127_1597356_0 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 312.0
BYDH2_k127_1597356_1 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000001667 83.0
BYDH2_k127_1597356_2 Homologues of snake disintegrins - - - 0.000000003884 69.0
BYDH2_k127_1597356_3 - - - - 0.000172 49.0
BYDH2_k127_1597356_4 - - - - 0.0003354 48.0
BYDH2_k127_1632162_0 Glycosyl Hydrolase Family 88 - - - 0.000000000000003107 89.0
BYDH2_k127_1710727_0 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000008359 217.0
BYDH2_k127_1710727_1 N-acetylmuramoyl-L-alanine amidase - - - 0.000000000000000000000000000000000000000000000000000000000007206 216.0
BYDH2_k127_1710727_2 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000002423 76.0
BYDH2_k127_1710727_3 Belongs to the UPF0109 family K06960 - - 0.0000000000004481 74.0
BYDH2_k127_1710727_4 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000001773 60.0
BYDH2_k127_1710727_5 lipoprotein receptor-related protein - - - 0.00002743 57.0
BYDH2_k127_1744944_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005565 335.0
BYDH2_k127_1820265_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009472 609.0
BYDH2_k127_1820265_1 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001111 252.0
BYDH2_k127_1820265_2 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000168 209.0
BYDH2_k127_1820265_3 Polymer-forming cytoskeletal - - - 0.0000000002437 69.0
BYDH2_k127_1852372_0 PFAM glycoside hydrolase, family 3 domain protein K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 578.0
BYDH2_k127_1852372_1 phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000002173 191.0
BYDH2_k127_1852372_2 Ham1 family - - - 0.0000000000000000000000000000000000000000000003438 173.0
BYDH2_k127_1852372_3 PFAM Cupin domain K05916 - 1.14.12.17 0.00000000000000000000429 97.0
BYDH2_k127_1852372_4 - - - - 0.00000000000000001931 83.0
BYDH2_k127_1852372_5 Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. K15383 - - 0.0000000003685 64.0
BYDH2_k127_1852372_6 Domain of unknown function (DU1801) - - - 0.0000000005405 62.0
BYDH2_k127_1852372_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis - - - 0.000000008143 64.0
BYDH2_k127_1852372_8 - - - - 0.00000003559 65.0
BYDH2_k127_1886947_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 401.0
BYDH2_k127_1886947_1 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009716 309.0
BYDH2_k127_1886947_2 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000003746 182.0
BYDH2_k127_1947754_0 Catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 299.0
BYDH2_k127_1947754_1 Ribosomal protein L33 K02913 - - 0.000000003253 59.0
BYDH2_k127_1957423_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006668 448.0
BYDH2_k127_1957423_1 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000001262 56.0
BYDH2_k127_1957423_2 Ami_3 K01448 - 3.5.1.28 0.00001345 52.0
BYDH2_k127_2045337_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008053 487.0
BYDH2_k127_2045337_1 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.00000000000000000000000000000000000000000000000000000002796 206.0
BYDH2_k127_2045337_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000004983 198.0
BYDH2_k127_2045337_3 WG containing repeat - - - 0.0000000000000000000000000003002 128.0
BYDH2_k127_2045337_4 WG containing repeat - - - 0.00000000008991 74.0
BYDH2_k127_2045337_6 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000009267 57.0
BYDH2_k127_2136729_0 PFAM Glycosyl K12994 - 2.4.1.349 0.0000000000000000000000000000000000000000000003835 181.0
BYDH2_k127_2136729_1 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000004019 142.0
BYDH2_k127_2282174_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000005264 235.0
BYDH2_k127_2282174_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000008306 223.0
BYDH2_k127_2282174_10 dephospho-CoA kinase activity - - - 0.000004417 56.0
BYDH2_k127_2282174_11 Fic/DOC family - - - 0.00002173 54.0
BYDH2_k127_2282174_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000003486 194.0
BYDH2_k127_2282174_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.00000000000000000000000000000000000000000000000000009065 189.0
BYDH2_k127_2282174_4 dUTP diphosphatase activity K01520,K13038 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0051259,GO:0051260,GO:0055086,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23,4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000006667 155.0
BYDH2_k127_2282174_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000001034 149.0
BYDH2_k127_2282174_6 Dihydrofolate reductase K00287 - 1.5.1.3 0.00000000000000000000000000000000001197 143.0
BYDH2_k127_2282174_7 glyoxalase bleomycin resistance protein dioxygenase K08234 - - 0.00000000000000000000000000000000002158 138.0
BYDH2_k127_2282174_8 Involved in septum formation K06287 GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0030428,GO:0032506,GO:0044085,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0090529,GO:1902410,GO:1903047 - 0.0000000000000000000000116 108.0
BYDH2_k127_2282174_9 PFAM Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000496 74.0
BYDH2_k127_2345390_0 glucosamine-1-phosphate N-acetyltransferase activity K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000001285 145.0
BYDH2_k127_2345390_1 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.00002435 51.0
BYDH2_k127_2345390_2 Archease protein family (MTH1598/TM1083) - - - 0.0002533 49.0
BYDH2_k127_2403104_0 Belongs to the DEAD box helicase family K05592,K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005941 445.0
BYDH2_k127_2403104_1 Metal-dependent hydrolase K07043 - - 0.00000000000000000000000001029 119.0
BYDH2_k127_2403104_2 thiamin-triphosphatase activity K05307 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0017144,GO:0019637,GO:0034641,GO:0042357,GO:0042723,GO:0043167,GO:0043169,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050333,GO:0051186,GO:0071704,GO:0072527,GO:1901360,GO:1901564 3.6.1.28 0.0000000000000000008581 94.0
BYDH2_k127_2403104_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000741 74.0
BYDH2_k127_2403104_5 Ceramide hydroxylase involved in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids. Hydroxylates the very long chain fatty acid of ceramides at C2 and C3 K19703 GO:0000170,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016491,GO:0019637,GO:0019752,GO:0030148,GO:0031224,GO:0031984,GO:0032787,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0055114,GO:0071704,GO:0080132,GO:0098827,GO:1901135,GO:1901564,GO:1901566,GO:1901576,GO:1903509 1.14.18.6 0.00000002334 61.0
BYDH2_k127_2405778_0 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000001125 207.0
BYDH2_k127_2405778_1 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000003704 53.0
BYDH2_k127_2444901_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000007093 176.0
BYDH2_k127_2444901_1 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000001845 115.0
BYDH2_k127_2444901_2 Protein of unknown function (DUF1003) - - - 0.0000000000000000000001166 100.0
BYDH2_k127_2456571_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000003386 206.0
BYDH2_k127_2456571_1 PFAM NAD-dependent epimerase dehydratase K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000001097 184.0
BYDH2_k127_2456571_2 Glycosyl transferase family group 2 - - - 0.0000000000000000000000000000000000001656 154.0
BYDH2_k127_2456571_3 Uncharacterized conserved protein (DUF2304) K09153 - - 0.000000000006645 70.0
BYDH2_k127_2513242_0 COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02243,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007267 344.0
BYDH2_k127_2513242_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000137 261.0
BYDH2_k127_2513242_2 methyltransferase - - - 0.0000000000000000000000005963 113.0
BYDH2_k127_2564225_0 nucleoside triphosphate catabolic process K01776,K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66,5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000007509 220.0
BYDH2_k127_2564225_1 PFAM YibE F-like protein - - - 0.00000000000000000000000000000000000000000000000002162 190.0
BYDH2_k127_2564225_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.00000000000000000000000000000000002644 153.0
BYDH2_k127_2564225_3 protein conserved in bacteria - - - 0.00000000000000000000006085 99.0
BYDH2_k127_2590178_0 Cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 408.0
BYDH2_k127_2590178_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000001487 124.0
BYDH2_k127_2590178_2 CorA-like Mg2+ transporter protein K03284 - - 0.0000000000000000000000000003316 125.0
BYDH2_k127_2590178_3 23S rRNA-intervening sequence protein - - - 0.0000000005308 65.0
BYDH2_k127_2713837_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 556.0
BYDH2_k127_2713837_2 plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K01802,K07533 - 5.2.1.8 0.00000007276 63.0
BYDH2_k127_2802971_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000461 257.0
BYDH2_k127_2802971_1 PFAM sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001126 255.0
BYDH2_k127_2802971_3 Carboxypeptidase regulatory-like domain - - - 0.0002895 52.0
BYDH2_k127_2824759_0 Transketolase, pyrimidine binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006138 355.0
BYDH2_k127_2824759_1 PFAM Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003023 314.0
BYDH2_k127_2824759_2 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000001528 178.0
BYDH2_k127_2824759_3 PfkB family K00874 - 2.7.1.45 0.000000000004346 77.0
BYDH2_k127_2824759_4 Thioredoxin - - - 0.0000003469 58.0
BYDH2_k127_2951576_0 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 321.0
BYDH2_k127_2951576_1 Psort location CytoplasmicMembrane, score K03217 - - 0.000000000000000000000000000000005707 138.0
BYDH2_k127_2955868_0 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000001323 173.0
BYDH2_k127_3013415_0 Belongs to the N(4) N(6)-methyltransferase family K00571,K07319 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 316.0
BYDH2_k127_3013415_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000004888 220.0
BYDH2_k127_3013415_2 Translin-associated protein X - - - 0.00000000000000000000008388 105.0
BYDH2_k127_3013415_3 PFAM Nucleotidyl transferase K00971 - 2.7.7.13 0.00000000001647 65.0
BYDH2_k127_3048414_0 Anticodon binding domain K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007618 358.0
BYDH2_k127_3048414_1 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000004056 267.0
BYDH2_k127_3048414_2 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives - - - 0.000393 48.0
BYDH2_k127_3093171_0 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007389 261.0
BYDH2_k127_3093171_1 collagenase K08303 - - 0.0000000000000000000000000000006083 125.0
BYDH2_k127_3093171_2 Transposase IS200 like - - - 0.00000000000000000000005198 106.0
BYDH2_k127_3093171_3 4Fe-4S single cluster domain of Ferredoxin I K05337 - - 0.00000000000000007291 82.0
BYDH2_k127_3093171_4 - - - - 0.00000000599 60.0
BYDH2_k127_3093171_5 4Fe-4S single cluster domain of Ferredoxin I K05337 - - 0.00000002085 59.0
BYDH2_k127_3117372_0 phenylalanyl-tRNA synthetase (beta subunit) K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008442 387.0
BYDH2_k127_3124568_0 AI-2E family transporter K03548 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.00000000000000000000000000000000000001199 152.0
BYDH2_k127_3124568_1 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.000000000000000000000006937 115.0
BYDH2_k127_3124568_2 biosynthesis protein - - - 0.00008225 54.0
BYDH2_k127_3158231_0 C-terminal, D2-small domain, of ClpB protein K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 443.0
BYDH2_k127_3170901_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0000166,GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005488,GO:0006082,GO:0006103,GO:0006520,GO:0006536,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0022607,GO:0034214,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070401,GO:0070402,GO:0070403,GO:0070404,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901605 1.4.1.2,1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 415.0
BYDH2_k127_3170901_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384,K03387 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000002809 252.0
BYDH2_k127_3170901_2 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000001645 123.0
BYDH2_k127_3170901_3 BRO family, N-terminal domain - - - 0.0000000000000005161 83.0
BYDH2_k127_3331021_0 chlorophyll binding K08651 - 3.4.21.66 0.00005013 57.0
BYDH2_k127_3419938_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 3.287e-225 718.0
BYDH2_k127_3419938_1 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000002575 205.0
BYDH2_k127_3419938_2 Thioredoxin - - - 0.0000000000000000000000000006005 123.0
BYDH2_k127_3419938_3 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.0002427 46.0
BYDH2_k127_3443175_0 PFAM malic protein domain protein K00027 - 1.1.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 409.0
BYDH2_k127_3443175_1 - - - - 0.000000000000000000000000000000000000000000000000001627 186.0
BYDH2_k127_3443175_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis - - - 0.0000000000000000000000000000000000002792 142.0
BYDH2_k127_3443175_5 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000001037 62.0
BYDH2_k127_3443175_6 heat shock protein DnaJ - - - 0.0000003475 65.0
BYDH2_k127_3443175_7 Immunoglobulin-like domain of bacterial spore germination - - - 0.0000003993 60.0
BYDH2_k127_3443175_8 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.00007285 51.0
BYDH2_k127_3452848_0 GIY-YIG catalytic domain K07461 - - 0.00000000000000000000000001813 111.0
BYDH2_k127_3452848_1 Endonuclease I - - - 0.000000004856 70.0
BYDH2_k127_3452848_2 regulator of chromosome condensation, RCC1 - - - 0.000001015 61.0
BYDH2_k127_3452848_3 Lamin Tail Domain - - - 0.00000123 62.0
BYDH2_k127_3452848_4 Transposase IS200 like K07491 - - 0.0008198 50.0
BYDH2_k127_349700_0 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000001582 229.0
BYDH2_k127_3569836_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 604.0
BYDH2_k127_3569836_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000001359 114.0
BYDH2_k127_3569836_2 tRNA nucleotidyltransferase poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000001083 108.0
BYDH2_k127_3569836_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000008984 96.0
BYDH2_k127_3719806_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 300.0
BYDH2_k127_3719806_1 A G-specific K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001339 271.0
BYDH2_k127_3719806_2 AhpC/TSA family K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000004539 255.0
BYDH2_k127_3719806_3 FAD-binding domain - - - 0.00000000000000000006662 98.0
BYDH2_k127_3719806_4 Transcriptional regulator, TrmB - - - 0.00000000004319 73.0
BYDH2_k127_3759075_0 Heavy metal transport detoxification protein K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 467.0
BYDH2_k127_3766476_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 528.0
BYDH2_k127_379159_0 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009337 300.0
BYDH2_k127_379159_1 MFS_1 like family K08153 - - 0.0000000000000000000000000000000000000000000000001126 192.0
BYDH2_k127_379159_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000007914 144.0
BYDH2_k127_379159_3 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000593 134.0
BYDH2_k127_379159_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000001809 109.0
BYDH2_k127_379159_5 lipolytic protein G-D-S-L family - - - 0.0000000009929 74.0
BYDH2_k127_379159_6 - - - - 0.000001469 53.0
BYDH2_k127_379159_7 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000003373 51.0
BYDH2_k127_379159_8 - - - - 0.000008442 61.0
BYDH2_k127_379159_9 cellulose 1,4-beta-cellobiosidase activity - - - 0.000131 57.0
BYDH2_k127_4053925_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 383.0
BYDH2_k127_4053925_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000001199 245.0
BYDH2_k127_4053925_2 SMART PDZ DHR GLGF domain protein K11749 - - 0.00000000000000000000000000000000000000000000000000000000007136 220.0
BYDH2_k127_4053925_3 Protein of unknown function (DUF3048) C-terminal domain - - - 0.000000000000000000000000000000000000000000000000001586 199.0
BYDH2_k127_4053925_4 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.0000000000000000000000000000000000000001407 162.0
BYDH2_k127_4053925_5 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000001852 115.0
BYDH2_k127_4053925_6 Binds the 23S rRNA K02909 - - 0.000000000000000000004979 95.0
BYDH2_k127_4053925_7 Protein of unknown function (DUF3298) - - - 0.00000000000000008775 91.0
BYDH2_k127_4062679_0 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009835 330.0
BYDH2_k127_4062679_1 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007089 282.0
BYDH2_k127_4062679_2 Polysaccharide biosynthesis protein K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000002905 222.0
BYDH2_k127_4077473_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 473.0
BYDH2_k127_408248_0 Penicillin-binding Protein dimerisation domain K03587,K08384 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 359.0
BYDH2_k127_408248_1 SPFH domain-Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000224 249.0
BYDH2_k127_408248_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.0000000000007309 70.0
BYDH2_k127_408248_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000001197 68.0
BYDH2_k127_4087128_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001124 270.0
BYDH2_k127_4087128_1 COG1404 Subtilisin-like serine proteases K14645 GO:0005575,GO:0005576 - 0.0000000000000000000000000000000000000000000000000003978 201.0
BYDH2_k127_4113165_0 Cysteine desulfurase K09014 - - 5.338e-228 715.0
BYDH2_k127_4113165_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045 477.0
BYDH2_k127_4113165_10 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000000001238 162.0
BYDH2_k127_4113165_11 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000008973 152.0
BYDH2_k127_4113165_12 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000009608 148.0
BYDH2_k127_4113165_13 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000005923 144.0
BYDH2_k127_4113165_14 NifU-like N terminal domain K04488 - - 0.000000000000000000000000000000000941 136.0
BYDH2_k127_4113165_15 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000001373 129.0
BYDH2_k127_4113165_16 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000002905 130.0
BYDH2_k127_4113165_17 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000009839 127.0
BYDH2_k127_4113165_18 Multi-copper polyphenol oxidoreductase laccase K05810 GO:0003674,GO:0005488,GO:0005507,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.000000000000000000000000000002961 129.0
BYDH2_k127_4113165_19 Iron-sulfur cluster assembly protein - - - 0.000000000000000000000000000003549 122.0
BYDH2_k127_4113165_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004548 350.0
BYDH2_k127_4113165_20 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000001646 121.0
BYDH2_k127_4113165_21 TIGRFAM autotransporter-associated beta strand repeat protein - - - 0.0000000000000000000000000006582 129.0
BYDH2_k127_4113165_22 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.000000000000000000000000009076 125.0
BYDH2_k127_4113165_23 Universal bacterial protein YeaZ K14742 - - 0.000000001167 65.0
BYDH2_k127_4113165_24 Transcriptional regulator - - - 0.000001428 58.0
BYDH2_k127_4113165_25 protein serine/threonine phosphatase activity - - - 0.000008574 59.0
BYDH2_k127_4113165_26 VIT family - - - 0.00008546 51.0
BYDH2_k127_4113165_3 Part of SUF system involved in inserting iron-sulfur clusters into proteins K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001252 278.0
BYDH2_k127_4113165_4 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000867 271.0
BYDH2_k127_4113165_5 glycosyl transferase group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000000000000000000000000000000003947 241.0
BYDH2_k127_4113165_6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000001176 221.0
BYDH2_k127_4113165_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000006229 216.0
BYDH2_k127_4113165_8 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000945 201.0
BYDH2_k127_4113165_9 TIGRFAM FeS assembly protein SufD K09015 - - 0.000000000000000000000000000000000000000000000000007053 197.0
BYDH2_k127_4130804_0 undecaprenyl-phosphate glucose phosphotransferase activity K03606,K07011 - - 0.000000000000000000000000000000000000000000007382 174.0
BYDH2_k127_4130804_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000002924 115.0
BYDH2_k127_4130804_2 Glycosyl transferases group 1 - - - 0.00000000000004392 76.0
BYDH2_k127_4248459_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.341e-251 790.0
BYDH2_k127_4259952_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 486.0
BYDH2_k127_4259952_1 Associated with various cellular activities K04748,K09882 - 6.6.1.2 0.0000000000000001539 89.0
BYDH2_k127_4259952_2 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.000000000000005374 87.0
BYDH2_k127_437135_0 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000001569 249.0
BYDH2_k127_437135_1 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000002386 69.0
BYDH2_k127_437135_2 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.0000000342 56.0
BYDH2_k127_437135_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0004643 48.0
BYDH2_k127_4378337_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005594 371.0
BYDH2_k127_4378337_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000005921 226.0
BYDH2_k127_4378337_3 Polymer-forming cytoskeletal - - - 0.0000000000004653 76.0
BYDH2_k127_4378337_4 - - - - 0.0000000254 68.0
BYDH2_k127_4430584_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 GO:0003674,GO:0003824,GO:0004151,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 305.0
BYDH2_k127_4430584_1 type II secretion system protein E K02454,K02652 - - 0.000000000000000000000000000000000000000000000002487 179.0
BYDH2_k127_4430584_2 GIY-YIG catalytic domain K07461 - - 0.000000000000000001093 89.0
BYDH2_k127_4430584_4 - - - - 0.000000004176 66.0
BYDH2_k127_4433516_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 408.0
BYDH2_k127_4433516_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000003135 73.0
BYDH2_k127_444677_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000008413 229.0
BYDH2_k127_444677_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000001374 82.0
BYDH2_k127_4546773_0 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000003751 212.0
BYDH2_k127_4546773_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000005932 179.0
BYDH2_k127_4546773_2 CYTH - - - 0.0000000000000001804 82.0
BYDH2_k127_4615316_0 Catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01893 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 511.0
BYDH2_k127_4615316_1 Responsible for synthesis of pseudouridine from uracil K06177,K06180 GO:0000027,GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000001404 173.0
BYDH2_k127_4615316_2 Poly A polymerase head domain K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000002985 124.0
BYDH2_k127_4615316_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000009021 124.0
BYDH2_k127_4618244_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 507.0
BYDH2_k127_4618244_1 DHH family K00974,K06881 GO:0008150,GO:0040007 2.7.7.72,3.1.13.3,3.1.3.7 0.00000007721 63.0
BYDH2_k127_4633116_0 M6 family metalloprotease domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000005031 254.0
BYDH2_k127_4633116_1 NUDIX domain K03574 - 3.6.1.55 0.000000000000000000000000000000000000003419 153.0
BYDH2_k127_4633116_2 histidine kinase HAMP region domain protein K03406 - - 0.00000000000004709 85.0
BYDH2_k127_4633116_3 PFAM Helix-turn-helix type 3 K07729 - - 0.00000000000005165 74.0
BYDH2_k127_4702519_0 PFAM glycosyl transferase, family 51 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 440.0
BYDH2_k127_4702519_1 Sugar-transfer associated ATP-grasp - - - 0.000000000000000000000000000000000000000000000000000000000000000002093 244.0
BYDH2_k127_4702519_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000005914 188.0
BYDH2_k127_4702519_3 NYN domain - - - 0.00000000000000000002849 97.0
BYDH2_k127_4702519_4 7 transmembrane helices usually fused to an inactive transglutaminase - - - 0.00000000000000000007025 100.0
BYDH2_k127_4702519_5 Prokaryotic glutathione synthetase, ATP-grasp domain K05844 - - 0.000000000000000002456 96.0
BYDH2_k127_4702519_6 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00003749 48.0
BYDH2_k127_4830470_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000001602 189.0
BYDH2_k127_4830470_1 ATPase or kinase K06925 GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000605 94.0
BYDH2_k127_4934777_0 von Willebrand factor type A domain - - - 0.0000000002954 73.0
BYDH2_k127_4992213_0 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000006931 248.0
BYDH2_k127_4992213_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000004051 173.0
BYDH2_k127_4992213_2 AAA domain - - - 0.00000000000000000000000000000000000001814 149.0
BYDH2_k127_5065254_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001131 282.0
BYDH2_k127_5065254_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.0000000000000000000000003597 116.0
BYDH2_k127_5124008_0 domain protein K02238 - - 0.000000000000000000000000000000000000000000000000000000003553 209.0
BYDH2_k127_5124008_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360 2.7.4.6 0.000000000000000000000000000000000000000000000001704 179.0
BYDH2_k127_5124008_2 Protein of unknown function (DUF3991) - - - 0.00001587 56.0
BYDH2_k127_5141982_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.000000000000000000000005415 115.0
BYDH2_k127_5141982_1 Belongs to the sulfur carrier protein TusA family - - - 0.00000009775 64.0
BYDH2_k127_514214_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 5.39e-213 678.0
BYDH2_k127_514214_1 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 409.0
BYDH2_k127_514214_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000001419 253.0
BYDH2_k127_5179851_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001858 281.0
BYDH2_k127_5179851_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000003214 228.0
BYDH2_k127_5270538_0 PFAM ketose-bisphosphate aldolase, class-II K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000008001 196.0
BYDH2_k127_5270538_1 Inositol monophosphatase family K01082 - 3.1.3.7 0.00000000000000000000000000000000000001959 154.0
BYDH2_k127_5270538_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000731 149.0
BYDH2_k127_5270538_3 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000003372 128.0
BYDH2_k127_5270538_4 Psort location Cytoplasmic, score K01783 - 5.1.3.1 0.0000000000000000000000000000004335 131.0
BYDH2_k127_5270538_5 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000000001481 108.0
BYDH2_k127_5270538_6 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000001551 58.0
BYDH2_k127_5386075_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 451.0
BYDH2_k127_5386075_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 332.0
BYDH2_k127_5386075_2 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000005304 221.0
BYDH2_k127_5386075_3 PFAM CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.00000000000004113 72.0
BYDH2_k127_551828_0 PFAM ribonuclease H K03469,K06864 - 3.1.26.4 0.00000000000000000000000000000000000002223 148.0
BYDH2_k127_551828_1 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000008333 119.0
BYDH2_k127_5534194_0 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000004843 173.0
BYDH2_k127_5534194_1 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000002319 171.0
BYDH2_k127_5534194_2 Domain of unknown function (DUF4342) - - - 0.00000000000000002815 83.0
BYDH2_k127_5534194_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000001449 66.0
BYDH2_k127_5534194_5 - - - - 0.0000000008812 59.0
BYDH2_k127_5612465_0 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K00556,K03218,K03437,K15333 GO:0001510,GO:0002128,GO:0002938,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008757,GO:0009020,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360 2.1.1.185,2.1.1.34 0.000000000000000000000000000000000000001189 154.0
BYDH2_k127_5612465_1 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000000000000000000002233 169.0
BYDH2_k127_5612465_2 - - - - 0.0000000000000000000000000009255 122.0
BYDH2_k127_5612465_3 - - - - 0.0000001827 59.0
BYDH2_k127_5612465_4 domain, Protein - - - 0.0000007123 63.0
BYDH2_k127_5612465_5 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000001436 53.0
BYDH2_k127_5735013_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000001053 234.0
BYDH2_k127_5735013_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000001627 224.0
BYDH2_k127_5799523_0 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000003769 137.0
BYDH2_k127_5799523_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000003294 115.0
BYDH2_k127_5799523_2 Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and or cell division K08304 GO:0000270,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016787,GO:0016798,GO:0019867,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0042597,GO:0043170,GO:0044425,GO:0044459,GO:0044462,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.0000004005 51.0
BYDH2_k127_5803366_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 475.0
BYDH2_k127_5803366_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007155 417.0
BYDH2_k127_5803366_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 321.0
BYDH2_k127_5803366_3 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K01921,K03589 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032505,GO:0032506,GO:0042802,GO:0043093,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 6.3.2.4 0.00000001274 65.0
BYDH2_k127_5813635_0 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000000004927 75.0
BYDH2_k127_5813635_1 diguanylate cyclase - - - 0.00000000944 67.0
BYDH2_k127_5813635_2 Protein phosphatase 2C K01090,K20074 - 3.1.3.16 0.00001634 57.0
BYDH2_k127_5849591_0 VanW like protein K18346 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004346 253.0
BYDH2_k127_5849591_1 DUF218 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001113 227.0
BYDH2_k127_5883608_0 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000001067 238.0
BYDH2_k127_5883608_1 transmembrane transporter activity K05820 - - 0.000000000000000000000000000000000000000000000000000000009319 216.0
BYDH2_k127_5887081_0 Large extracellular alpha-helical protein K06894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 471.0
BYDH2_k127_5887081_1 Memo-like protein K06990 - - 0.00000000000000000000000000002684 130.0
BYDH2_k127_5887648_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363 5.99.1.3 2.372e-224 711.0
BYDH2_k127_5920749_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 498.0
BYDH2_k127_5920749_1 - - - - 0.00000000000000000000000002141 112.0
BYDH2_k127_5920749_2 PFAM membrane protein of K08972 - - 0.00000000006121 64.0
BYDH2_k127_6024424_0 cysteine-tRNA ligase activity K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.00000000000000000000000000000000000000002258 159.0
BYDH2_k127_6024424_1 tRNA (guanine-N7-)-methyltransferase activity - - - 0.0000000000000000001564 95.0
BYDH2_k127_6024424_2 Mediates influx of magnesium ions K03284 - - 0.00000002547 60.0
BYDH2_k127_6092787_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000001124 184.0
BYDH2_k127_6092787_1 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000001626 156.0
BYDH2_k127_6092787_2 SdrD B-like domain - - - 0.000000000000000000000000000000000004633 154.0
BYDH2_k127_6092787_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000006138 68.0
BYDH2_k127_6130986_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000003762 163.0
BYDH2_k127_6130986_1 Cell wall formation K00075 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008762,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0055114,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 1.3.1.98 0.0000000000000000004768 90.0
BYDH2_k127_6204382_0 Predicted membrane protein (DUF2207) - - - 0.00000000000000000000000000000000000000000003995 176.0
BYDH2_k127_6232693_0 Pre-mRNA-splicing factor ATP-dependent RNA K12818 - 3.6.4.13 0.0000000000000000000000000000000000000000009942 178.0
BYDH2_k127_6252430_0 DEAD DEAH box helicase K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 615.0
BYDH2_k127_6252430_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 423.0
BYDH2_k127_6252430_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000004077 192.0
BYDH2_k127_6252430_3 - - - - 0.00000000000000000001267 93.0
BYDH2_k127_6297567_0 Protein of unknown function (DUF541) K09797 - - 0.00000000000000000000000000000000000000000000008516 177.0
BYDH2_k127_6297567_1 Ferric reductase like transmembrane component - - - 0.00000000000000000000000002976 114.0
BYDH2_k127_6321794_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 614.0
BYDH2_k127_6321794_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 534.0
BYDH2_k127_6321794_2 ig-like, plexins, transcription factors - - - 0.00000000000000000000000009331 126.0
BYDH2_k127_6321794_3 ribosomal protein - - - 0.0000000000000000000006078 100.0
BYDH2_k127_6321794_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000003551 70.0
BYDH2_k127_6321794_5 regulator of chromosome condensation, RCC1 K20276 - - 0.0000002345 65.0
BYDH2_k127_6321794_6 Type II transport protein GspH K08084 - - 0.00001668 54.0
BYDH2_k127_6321794_7 domain, Protein K09774 - - 0.00008395 53.0
BYDH2_k127_6321794_8 protein transport across the cell outer membrane K02246,K02457,K02672,K08084,K10926 - - 0.0005505 50.0
BYDH2_k127_6360744_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1264.0
BYDH2_k127_6360744_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 446.0
BYDH2_k127_6360744_3 GIY-YIG catalytic domain K07461 - - 0.00000000000000000000000000531 113.0
BYDH2_k127_6360744_5 - - - - 0.0008962 48.0
BYDH2_k127_6455880_0 TIGRFAM histone acetyltransferase, ELP3 family K07739 - 2.3.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001908 282.0
BYDH2_k127_6455880_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000002554 245.0
BYDH2_k127_6455880_2 Metal dependent phosphohydrolases with conserved 'HD' motif. K06950 - - 0.000000000000000000000000000000000000000000000000000000000000001484 224.0
BYDH2_k127_6455880_3 RIO1 family K07178 - 2.7.11.1 0.0000000000000000000000000000003144 132.0
BYDH2_k127_6455880_4 Nudix hydrolase K03574 - 3.6.1.55 0.000000000000000000000000000001541 125.0
BYDH2_k127_6455880_5 Nacht domain - - - 0.0000000109 66.0
BYDH2_k127_6467163_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.0000000000000000431 91.0
BYDH2_k127_6551055_0 Beta-Casp domain K07576,K07577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 435.0
BYDH2_k127_6551055_1 O-antigen - - - 0.0000000002184 73.0
BYDH2_k127_6551055_2 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K20866 - 3.1.3.10 0.0001684 50.0
BYDH2_k127_6672409_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 333.0
BYDH2_k127_6672409_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 308.0
BYDH2_k127_6672409_2 signaling protein consisting of a modified GGDEF domain and a DHH domain - - - 0.0008117 51.0
BYDH2_k127_6720074_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 411.0
BYDH2_k127_6720074_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 300.0
BYDH2_k127_6720074_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004051 259.0
BYDH2_k127_6720074_3 efflux transmembrane transporter activity K02004,K05685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002721 254.0
BYDH2_k127_6720074_4 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000001658 224.0
BYDH2_k127_6720074_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000003066 132.0
BYDH2_k127_6767842_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005311 338.0
BYDH2_k127_6767842_1 ATPase activity - - - 0.000000000000000000000000000000000000000000000000000000000003565 228.0
BYDH2_k127_6767842_2 Belongs to the UPF0102 family K07460 - - 0.0000000000000000001002 94.0
BYDH2_k127_6767842_3 TM2 domain - - - 0.0000000000107 69.0
BYDH2_k127_6799746_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 325.0
BYDH2_k127_6799746_1 Belongs to the ATCase OTCase family K00608,K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002936 278.0
BYDH2_k127_6799746_2 Ribosomal protein S1 K02945 - - 0.00000000000000000000000000000000000000000000000000000000005226 220.0
BYDH2_k127_6810858_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000000000000000000000000000000000000000001377 198.0
BYDH2_k127_6810858_1 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000004114 146.0
BYDH2_k127_6810858_2 serine threonine protein kinase - - - 0.00000000000000000000009838 107.0
BYDH2_k127_6824646_0 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000006256 238.0
BYDH2_k127_6824646_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000001669 156.0
BYDH2_k127_6891228_0 Domain of unknown function DUF11 - - - 0.000000001398 72.0
BYDH2_k127_6891228_1 Domain of unknown function DUF11 - - - 0.00002449 58.0
BYDH2_k127_6974960_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 7.681e-260 817.0
BYDH2_k127_6974960_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006562 282.0
BYDH2_k127_7003094_0 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K00057 - 1.1.1.94 0.0000000000000000000000003077 116.0
BYDH2_k127_700401_0 Large extracellular alpha-helical protein K06894 - - 0.00000000000000000000000000000000000000000000000000000000000000000002702 256.0
BYDH2_k127_700401_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000001172 108.0
BYDH2_k127_7041265_0 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter MnhD K12137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 519.0
BYDH2_k127_7041265_1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007306 455.0
BYDH2_k127_7041265_2 plastoquinone (Complex I) K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 364.0
BYDH2_k127_7041265_3 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001457 278.0
BYDH2_k127_7041265_4 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000003797 97.0
BYDH2_k127_7041265_5 Polysaccharide biosynthesis C-terminal domain - - - 0.0000000000000002714 92.0
BYDH2_k127_7041265_6 Hydrogenase 4 membrane K12140 - - 0.000007813 55.0
BYDH2_k127_7082425_0 Bacterial DNA polymerase III alpha subunit K02337 - 2.7.7.7 6.049e-260 837.0
BYDH2_k127_7082425_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008681 321.0
BYDH2_k127_7082425_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000005583 158.0
BYDH2_k127_7095195_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009088 318.0
BYDH2_k127_7095195_1 HAD hydrolase, family IB - - - 0.000000000000000000000038 108.0
BYDH2_k127_7184544_0 HI0933 family K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000002123 243.0
BYDH2_k127_7348766_0 Elongation factor G C-terminus K06207 GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 1.059e-256 803.0
BYDH2_k127_7348766_1 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003429 299.0
BYDH2_k127_7348766_2 phosphotransferase activity, for other substituted phosphate groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004687 266.0
BYDH2_k127_7348766_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000001325 196.0
BYDH2_k127_7348766_4 Belongs to the Fur family K09825 - - 0.00000000000000000000001055 105.0
BYDH2_k127_7348766_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000006892 99.0
BYDH2_k127_7348766_6 Belongs to the peptidase S51 family K05995 - 3.4.13.21 0.00000000000003141 80.0
BYDH2_k127_7348766_7 Tfp pilus assembly protein FimV - - - 0.0000001497 63.0
BYDH2_k127_7369732_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009971 339.0
BYDH2_k127_7369732_1 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000003547 167.0
BYDH2_k127_7369732_2 cell envelope-related transcriptional attenuator - - - 0.00000000000000000000000000000000000000004597 169.0
BYDH2_k127_7416468_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000004311 151.0
BYDH2_k127_7573187_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002435 263.0
BYDH2_k127_7573187_1 Glycosyltransferase like family 2 K07011 - - 0.0000000000000000000000000000000000000000000000000005515 194.0
BYDH2_k127_7573187_2 Transmembrane amino acid transporter protein - - - 0.000002907 56.0
BYDH2_k127_7603190_0 Phosphoglycerate mutase family - - - 0.000000000000000000006029 101.0
BYDH2_k127_7603190_1 leucine-rich repeat-containing protein typical subtype K13730 - - 0.00000001546 68.0
BYDH2_k127_7603190_2 cell adhesion involved in biofilm formation - - - 0.0005645 53.0
BYDH2_k127_7652941_0 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000005187 221.0
BYDH2_k127_7685304_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000008406 268.0
BYDH2_k127_7685304_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000003155 216.0
BYDH2_k127_7712491_0 Beta propeller domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 445.0
BYDH2_k127_7712491_1 histone acetyltransferase, ELP3 family K07739 - 2.3.1.48 0.000000000000000000000000000000000000000000006241 173.0
BYDH2_k127_7712491_2 Methyltransferase domain K10770 - 2.1.1.229 0.00000000000001068 83.0
BYDH2_k127_7712491_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000002343 51.0
BYDH2_k127_7712491_4 NlpC/P60 family - - - 0.0002472 53.0
BYDH2_k127_7728076_0 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000007369 198.0
BYDH2_k127_7728076_1 Protein conserved in bacteria - - - 0.0000000000000000000000000000000002866 153.0
BYDH2_k127_7728076_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000001333 120.0
BYDH2_k127_7728076_3 Zeta toxin - - - 0.0000000000000008377 92.0
BYDH2_k127_7728076_4 Phosphotransferase enzyme family - - - 0.00000000000001001 85.0
BYDH2_k127_7728076_6 Peptidase, M23 K08307 - - 0.000002021 58.0
BYDH2_k127_7728076_7 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00002536 53.0
BYDH2_k127_7728076_8 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.1,3.5.4.33 0.00008775 46.0
BYDH2_k127_7738303_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 4.033e-226 722.0
BYDH2_k127_7738303_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000005853 78.0
BYDH2_k127_780370_0 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005112 455.0
BYDH2_k127_780370_1 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000614 104.0
BYDH2_k127_780370_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000004181 98.0
BYDH2_k127_7881037_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 457.0
BYDH2_k127_7881037_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000003805 164.0
BYDH2_k127_7881037_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000009973 51.0
BYDH2_k127_7881037_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000002317 53.0
BYDH2_k127_7928749_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 460.0
BYDH2_k127_7928749_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 424.0
BYDH2_k127_7928749_2 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030145,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0043937,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046537,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0050789,GO:0050793,GO:0051186,GO:0051188,GO:0055086,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000936 338.0
BYDH2_k127_7928749_3 Belongs to the phosphoglycerate kinase family K00927 GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000002118 276.0
BYDH2_k127_7928749_4 Protein of unknown function (DUF541) K09807 - - 0.000000000000000000000001358 113.0
BYDH2_k127_7932852_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002038 290.0
BYDH2_k127_7948119_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001936 232.0
BYDH2_k127_7948119_1 CYTH - - - 0.0000000000000000000000000000000000000000000000000000000000000003373 224.0
BYDH2_k127_7948119_2 AAA domain K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000001124 187.0
BYDH2_k127_7948119_3 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000004813 147.0
BYDH2_k127_7948119_4 Mazg nucleotide pyrophosphohydrolase - - - 0.00000002369 57.0
BYDH2_k127_7948119_5 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0003329 49.0
BYDH2_k127_7950794_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000524 239.0
BYDH2_k127_7950794_1 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000001035 172.0
BYDH2_k127_7950794_2 ATPase activity - - - 0.00000000001221 78.0
BYDH2_k127_7993889_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 358.0
BYDH2_k127_8096554_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 298.0
BYDH2_k127_8096554_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07291 - 2.7.8.34 0.000000000000000000000000000000000000000000000000000000000000000009674 234.0
BYDH2_k127_8096554_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356,K03503 - 3.4.21.88 0.00000000000000000000000000000000000000000000000003718 185.0
BYDH2_k127_8096554_3 GDP-mannose mannosyl hydrolase activity - - - 0.00000000000000000000000000000000000000009454 155.0
BYDH2_k127_8096554_4 NUDIX domain K03574 - 3.6.1.55 0.000000002258 64.0
BYDH2_k127_8096554_5 - - - - 0.0000000347 58.0
BYDH2_k127_8115720_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000003476 227.0
BYDH2_k127_8115720_1 ferric reductase - - - 0.000000000000000000000000000000000000000000000000000000004974 208.0
BYDH2_k127_8115720_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0000000000000000000000000000000000000000000000000000006733 200.0
BYDH2_k127_8115720_3 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000002747 170.0
BYDH2_k127_8115720_4 PFAM NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000001118 133.0
BYDH2_k127_8115720_5 - - - - 0.0000000000000000000000000000002112 135.0
BYDH2_k127_8115720_6 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000001245 66.0
BYDH2_k127_8115720_7 Psort location Cytoplasmic, score - - - 0.00000536 57.0
BYDH2_k127_8115720_8 - - - - 0.00005131 46.0
BYDH2_k127_8124891_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000005044 235.0
BYDH2_k127_8124891_1 Glycosyl transferase 4-like - - - 0.0000000000000000000000000000000000000001037 161.0
BYDH2_k127_8124891_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000002043 105.0
BYDH2_k127_8206812_0 tRNA synthetase class II core domain (G, H, P, S and T) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000922 203.0
BYDH2_k127_8221319_1 PFAM zinc iron permease K16267 - - 0.00000000000000000000000000000000000000000000000000001276 197.0
BYDH2_k127_8221319_2 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000001441 134.0
BYDH2_k127_8259533_1 Glycosyl transferase family 1 - - - 0.00000000000002518 75.0
BYDH2_k127_827585_0 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000421 95.0
BYDH2_k127_827585_1 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000003189 60.0
BYDH2_k127_827585_2 CHASE - - - 0.00000008465 64.0
BYDH2_k127_8292811_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 331.0
BYDH2_k127_8292811_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000003607 70.0
BYDH2_k127_8292811_2 - - - - 0.0001063 47.0
BYDH2_k127_8294490_0 - - - - 0.0000000000004046 78.0
BYDH2_k127_8300008_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1233.0
BYDH2_k127_8300008_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 606.0
BYDH2_k127_8300008_3 Putative RNA methylase family UPF0020 - - - 0.0000000000000000000000000003396 128.0
BYDH2_k127_8300008_4 Calcineurin-like phosphoesterase - - - 0.000000000000000000005859 103.0
BYDH2_k127_8309476_0 Glutamine amidotransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004437 284.0
BYDH2_k127_8309476_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000001219 186.0
BYDH2_k127_8309476_2 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000001363 148.0
BYDH2_k127_8309476_3 RNA methylase - - - 0.00000000000000000005974 97.0
BYDH2_k127_8340834_0 pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for K15987 - 3.6.1.1 1.013e-267 837.0
BYDH2_k127_8340834_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744 366.0
BYDH2_k127_8340834_2 structural constituent of ribosome K02911 GO:0003674,GO:0003735,GO:0005198 - 0.00000000001582 67.0
BYDH2_k127_8340834_3 DNA polymerase alpha chain like domain K07053 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004532,GO:0004534,GO:0004536,GO:0004540,GO:0005488,GO:0006139,GO:0006259,GO:0006521,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008252,GO:0008409,GO:0009987,GO:0010565,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016895,GO:0016896,GO:0019222,GO:0030145,GO:0031323,GO:0033238,GO:0034641,GO:0035312,GO:0042578,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090357,GO:0090501,GO:0090503,GO:0140097,GO:0140098,GO:1901360 3.1.3.97 0.00005459 55.0
BYDH2_k127_8402679_0 adenylosuccinate lyase K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009093 464.0
BYDH2_k127_8402679_1 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000005822 255.0
BYDH2_k127_8402679_2 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000397 209.0
BYDH2_k127_8402679_3 Stage II sporulation protein K06381 - - 0.00000000000000002227 96.0
BYDH2_k127_8418035_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001839 267.0
BYDH2_k127_8418035_1 transcriptional K02483,K07672 GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0098771 - 0.00000000000002671 77.0
BYDH2_k127_8418035_2 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000001438 50.0
BYDH2_k127_8486480_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000005009 269.0
BYDH2_k127_8486480_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000004811 127.0
BYDH2_k127_8486480_2 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000002048 74.0
BYDH2_k127_8488091_0 Glycosyltransferase like family 2 K07011 - - 0.0000000000000000000000000000000000000000000005166 177.0
BYDH2_k127_8488091_1 Protein of unknown function (DUF4012) - - - 0.000000000000000000000000000000000000003617 167.0
BYDH2_k127_8488091_2 DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.000000000000000000000002427 104.0
BYDH2_k127_8488091_3 PFAM Glycosyl transferase family 2 - - - 0.0003561 48.0
BYDH2_k127_8589827_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009352 440.0
BYDH2_k127_8589827_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 373.0
BYDH2_k127_8589827_2 Diguanylate cyclase - - - 0.0000000000000005279 89.0
BYDH2_k127_8589827_3 Bacterial PH domain - - - 0.00000051 59.0
BYDH2_k127_8601036_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 2.212e-298 929.0
BYDH2_k127_8601036_1 GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 599.0
BYDH2_k127_8601036_10 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000084 165.0
BYDH2_k127_8601036_11 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000009647 167.0
BYDH2_k127_8601036_12 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000002097 165.0
BYDH2_k127_8601036_13 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000001711 148.0
BYDH2_k127_8601036_14 metallopeptidase activity K06402 - - 0.0000000000000000000000000000000000000401 151.0
BYDH2_k127_8601036_15 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000008001 145.0
BYDH2_k127_8601036_16 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000002024 143.0
BYDH2_k127_8601036_17 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000002686 135.0
BYDH2_k127_8601036_18 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000002968 130.0
BYDH2_k127_8601036_19 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000001137 123.0
BYDH2_k127_8601036_2 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 411.0
BYDH2_k127_8601036_20 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0008150,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000236 120.0
BYDH2_k127_8601036_21 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000002377 108.0
BYDH2_k127_8601036_22 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000427 100.0
BYDH2_k127_8601036_23 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000008557 92.0
BYDH2_k127_8601036_24 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000001561 87.0
BYDH2_k127_8601036_25 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000003373 72.0
BYDH2_k127_8601036_26 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000132 49.0
BYDH2_k127_8601036_3 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 308.0
BYDH2_k127_8601036_4 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000002333 233.0
BYDH2_k127_8601036_5 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000003043 218.0
BYDH2_k127_8601036_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000002782 201.0
BYDH2_k127_8601036_7 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000002588 198.0
BYDH2_k127_8601036_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000007658 173.0
BYDH2_k127_8601036_9 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000004144 174.0
BYDH2_k127_8779623_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007263 297.0
BYDH2_k127_8779623_1 Nudix hydrolase K01515 - 3.6.1.13 0.000000000004222 74.0
BYDH2_k127_9002489_0 anaphase-promoting complex binding K12132 - 2.7.11.1 0.000003977 60.0
BYDH2_k127_9002489_1 cellulase activity - - - 0.000005327 61.0
BYDH2_k127_9108829_0 Cell shape determining protein, MreB Mrl family K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007267 331.0
BYDH2_k127_9108829_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000873 187.0
BYDH2_k127_9108829_2 Involved in formation and maintenance of cell shape K03570 - - 0.0001112 51.0
BYDH2_k127_9157648_0 COG0826 Collagenase and related K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006987 479.0
BYDH2_k127_9157648_1 phosphatidate phosphatase activity K03975,K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 397.0
BYDH2_k127_9157648_2 Dihydroorotate dehydrogenase K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001087 288.0
BYDH2_k127_9157648_3 rRNA (adenine-C2-)-methyltransferase activity K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000002583 207.0
BYDH2_k127_9157648_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000001883 147.0
BYDH2_k127_9157648_5 PFAM RNP-1 like RNA-binding protein - - - 0.000000000000000000000001906 105.0
BYDH2_k127_9157648_6 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K14415 - 2.7.9.2,6.5.1.3 0.00000000145 64.0
BYDH2_k127_9157648_7 Peptidase U61, LD-carboxypeptidase A K01297 - 3.4.17.13 0.000000002238 69.0
BYDH2_k127_916988_0 DEAH-box nuclear pre-mRNA splicing factor K12818 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 351.0
BYDH2_k127_916988_1 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000342 177.0
BYDH2_k127_916988_2 Belongs to the 'phage' integrase family - - - 0.000000000005249 72.0
BYDH2_k127_916988_3 Belongs to the LOG family - - - 0.000000004585 63.0
BYDH2_k127_916988_4 Binds directly to 16S ribosomal RNA K02968 - - 0.0000122 50.0
BYDH2_k127_916988_5 Pentapeptide repeats (9 copies) - - - 0.00001538 55.0
BYDH2_k127_9461282_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 589.0
BYDH2_k127_9461282_1 COG NOG15344 non supervised orthologous group - - - 0.0000000000000000000000000944 111.0
BYDH2_k127_9461282_10 COG NOG14600 non supervised orthologous group - - - 0.00009728 45.0
BYDH2_k127_9461282_2 COG NOG14600 non supervised orthologous group - - - 0.00000000000000000000000277 102.0
BYDH2_k127_9461282_3 ORF located using Blastx - - - 0.000000000000000000003466 95.0
BYDH2_k127_9461282_4 - - - - 0.00000000008138 63.0
BYDH2_k127_9461282_5 COG NOG15344 non supervised orthologous group - - - 0.000000005712 57.0
BYDH2_k127_9461282_6 - - - - 0.00000001073 60.0
BYDH2_k127_9461282_8 non supervised orthologous group - - - 0.00001304 49.0
BYDH2_k127_9549810_0 cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004742 261.0
BYDH2_k127_9549810_1 membrane protein, required for N-linked glycosylation K07151 - 2.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000006442 259.0
BYDH2_k127_9549810_2 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000003003 116.0
BYDH2_k127_9549810_3 TspO/MBR family K05770 - - 0.000005778 50.0
BYDH2_k127_9679684_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 371.0
BYDH2_k127_9679684_1 TIGRFAM periplasmic serine protease, Do DeqQ family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000003197 238.0
BYDH2_k127_9679684_2 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000001387 225.0
BYDH2_k127_9679684_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000001069 220.0
BYDH2_k127_9697591_0 FtsK SpoIIIE family protein K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008542 504.0
BYDH2_k127_9697591_1 Helix-turn-helix domain - - - 0.00000000003292 73.0
BYDH2_k127_9735179_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000001363 199.0
BYDH2_k127_9772778_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 442.0
BYDH2_k127_9777716_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000498 187.0
BYDH2_k127_9777716_1 Peptidase, M16 K07263 - - 0.00000000000000006451 93.0
BYDH2_k127_9777716_2 3D domain protein - - - 0.0000000000006622 77.0
BYDH2_k127_97916_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 542.0
BYDH2_k127_97916_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002054 286.0
BYDH2_k127_97916_2 H( )-stimulated, divalent metal cation uptake system - - - 0.00000000000000000000000000000000000000000000000000000000000000000001324 252.0
BYDH2_k127_97916_3 - - - - 0.000002056 57.0
BYDH2_k127_9805654_0 Cation transporting ATPase, C-terminus K01531 - 3.6.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 609.0
BYDH2_k127_9805654_1 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000003255 243.0
BYDH2_k127_9805654_10 PolyA polymerase - - - 0.00001472 55.0
BYDH2_k127_9805654_11 ADP-ribosylglycohydrolase - - - 0.00008138 53.0
BYDH2_k127_9805654_2 PFAM SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000007439 239.0
BYDH2_k127_9805654_3 hydrolase K07025 GO:0003674,GO:0003824,GO:0003850,GO:0004346,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0044237,GO:0050308,GO:0050309 - 0.000000000000000000000000000005856 127.0
BYDH2_k127_9805654_4 AAA domain - GO:0000166,GO:0001882,GO:0001883,GO:0001894,GO:0001895,GO:0003674,GO:0005488,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008289,GO:0009314,GO:0009416,GO:0009628,GO:0009987,GO:0017076,GO:0019001,GO:0032386,GO:0032388,GO:0032501,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033157,GO:0035091,GO:0035639,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045494,GO:0048518,GO:0048871,GO:0050789,GO:0050896,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0051716,GO:0060249,GO:0060341,GO:0065007,GO:0065008,GO:0070201,GO:0070300,GO:0071214,GO:0071478,GO:0071482,GO:0090087,GO:0090316,GO:0097159,GO:0097367,GO:0104004,GO:1901265,GO:1901363,GO:1903827,GO:1903829,GO:1904951 - 0.00000000000000000000000000008755 123.0
BYDH2_k127_9805654_5 - - - - 0.0000000000000000000000000003337 117.0
BYDH2_k127_9805654_6 - - - - 0.000000000000000000000000002895 119.0
BYDH2_k127_9805654_7 SNARE associated Golgi protein - - - 0.0000000000000000000001988 104.0
BYDH2_k127_9805654_8 Leucine-rich repeats, typical (most populated) subfamily K19613 - - 0.00000000000000000007148 96.0
BYDH2_k127_9805654_9 - - - - 0.000000000000002375 81.0
BYDH2_k127_9849346_0 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.0000000000000000000000000000000000000000000000000000002706 198.0
BYDH2_k127_9849346_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000007886 81.0
BYDH2_k127_9849346_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis - - - 0.000006361 48.0
BYDH2_k127_991930_0 Methicillin resistance protein K05363,K11693 - 2.3.2.10,2.3.2.16 0.0000000000000000000000000000000000000000000000001697 189.0
BYDH2_k127_991930_1 Domain of unknown function (DUF4131) K02238 - - 0.00000000000000000000000000000000000000000000276 182.0
BYDH2_k127_991930_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000001775 139.0
BYDH2_k127_991930_3 Belongs to the LTA synthase family K01138,K19005 - 2.7.8.20 0.00000000000000000000000004362 125.0
BYDH2_k127_991930_4 Lanthionine synthetase C family protein - - - 0.00000000000000000000008857 106.0
BYDH2_k127_991930_5 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.000000000000000000006552 96.0
BYDH2_k127_991930_6 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000001079 82.0
BYDH2_k127_991930_7 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate - - - 0.0000002715 63.0
BYDH2_k127_9975494_0 Type II secretory pathway, component PulF K02653 GO:0002790,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008104,GO:0008150,GO:0009297,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0016020,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032940,GO:0033036,GO:0042886,GO:0043711,GO:0044085,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0098776 - 0.000000000000000000000000803 108.0
BYDH2_k127_9975494_1 Type II secretion system (T2SS), protein G K02456 - - 0.0002045 50.0
BYDH2_k127_9975494_2 general secretion pathway protein - - - 0.0003132 49.0
BYDH2_k127_9975494_3 general secretion pathway protein K02456,K02650 - - 0.0009458 48.0