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Overview

ID MAG00175
Name BYDH2_bin.7
Sample SMP0005
Taxonomy
Kingdom Bacteria
Phylum Patescibacteriota
Class Gracilibacteria
Order UM-FILTER-43-11
Family UM-FILTER-43-11
Genus FEN-1329
Species
Assembly information
Completeness (%) 77.59
Contamination (%) 2.57
GC content (%) 52.0
N50 (bp) 3,041
Genome size (bp) 918,531

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes736

Gene name Description KEGG GOs EC E-value Score Sequence
BYDH2_k127_10052373_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 348.0
BYDH2_k127_10052373_1 metalloendopeptidase activity - GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464 - 0.000000009225 57.0
BYDH2_k127_10057300_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 3.355e-198 639.0
BYDH2_k127_10057300_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0001871,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005623,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0019538,GO:0030246,GO:0030247,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065 - 0.00000000000000000000000000000000003603 141.0
BYDH2_k127_10057300_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000002494 124.0
BYDH2_k127_10057300_3 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031123,GO:0031124,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000003707 113.0
BYDH2_k127_10057300_4 Double zinc ribbon - - - 0.0000001105 59.0
BYDH2_k127_10067922_0 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 576.0
BYDH2_k127_10067922_1 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790 - 2.3.1.128 0.00000000008417 63.0
BYDH2_k127_10224387_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 304.0
BYDH2_k127_10224387_1 Psort location Cytoplasmic, score 9.97 - - - 0.0001255 52.0
BYDH2_k127_10242724_0 glycoside hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 320.0
BYDH2_k127_10291418_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000003748 252.0
BYDH2_k127_10291418_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000007589 121.0
BYDH2_k127_10322671_0 TIGRFAM flavoprotein, HI0933 family K07007 - - 0.0000000000000000000000000000000000000000000000000000007101 205.0
BYDH2_k127_10322671_1 RNHCP domain - - - 0.00000000000000000000000003724 111.0
BYDH2_k127_10425572_0 NUDIX domain K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004246 361.0
BYDH2_k127_10425572_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000007357 65.0
BYDH2_k127_10430412_0 RmlD substrate binding domain K12451 - - 0.0000000000000000000000000000000000000000000000000000008538 200.0
BYDH2_k127_10476812_0 PFAM peptidase M24 K01262,K01271 - 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000269 271.0
BYDH2_k127_10476812_1 PFAM Sulfatase - - - 0.00000000000000001155 91.0
BYDH2_k127_10501720_0 ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004271 261.0
BYDH2_k127_10501720_1 ATP-binding region, ATPase domain protein - - - 0.000002665 57.0
BYDH2_k127_10527107_0 Amidase - - - 0.00000000000000004328 94.0
BYDH2_k127_10586076_0 ECF sigma factor K03088 - - 0.0000000000000000000000000002291 121.0
BYDH2_k127_10586076_1 PFAM Glycosyl transferases group 1 - - - 0.000004927 49.0
BYDH2_k127_10586076_2 FecR protein - - - 0.0005008 51.0
BYDH2_k127_10618664_0 unfolded protein binding K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0018995,GO:0019219,GO:0019222,GO:0020003,GO:0022607,GO:0030430,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043531,GO:0043656,GO:0043657,GO:0043933,GO:0044085,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0065010,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 1.484e-243 768.0
BYDH2_k127_10618664_1 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000002193 206.0
BYDH2_k127_10618664_2 dna polymerase iii K10857 - - 0.00000000000000000000000000000000000000000000000000002899 196.0
BYDH2_k127_10618664_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000003406 78.0
BYDH2_k127_1063044_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000002344 207.0
BYDH2_k127_1063044_1 COG0451 Nucleoside-diphosphate-sugar epimerases K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000004592 179.0
BYDH2_k127_1063044_2 PFAM ketose-bisphosphate aldolase, class-II K01624 - 4.1.2.13 0.0000000000000000001014 89.0
BYDH2_k127_10686723_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.35 0.00000000000000000000000004316 117.0
BYDH2_k127_10686723_1 Glycosyl transferase family 2 - - - 0.00000000001407 75.0
BYDH2_k127_10686723_2 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.0002404 51.0
BYDH2_k127_1069262_0 AAA domain - - - 0.000000000000000000000002103 114.0
BYDH2_k127_10705234_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008014 294.0
BYDH2_k127_10705234_1 Component of SufB-SufC-SufD cysteine desulfurase K09015 GO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0050896,GO:0051186,GO:0071840 - 0.0000000000000002326 87.0
BYDH2_k127_10714985_0 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000001879 162.0
BYDH2_k127_10714985_1 ATP-grasp domain - - - 0.0000000007359 72.0
BYDH2_k127_10848484_0 Sugar-specific transcriptional regulator TrmB - - - 0.0000000001696 69.0
BYDH2_k127_10848484_1 Tellurite resistance protein TehB - - - 0.0002837 53.0
BYDH2_k127_10849240_0 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000001831 154.0
BYDH2_k127_10849240_1 Belongs to the methyltransferase superfamily K07444 - - 0.0000000000000000000000000000000000000404 147.0
BYDH2_k127_1090497_0 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0017148,GO:0019222,GO:0019538,GO:0022625,GO:0022626,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.00000000000000000000000000274 117.0
BYDH2_k127_1090497_1 Dihydroorotate dehydrogenase K00226 - 1.3.98.1 0.00000000000001386 74.0
BYDH2_k127_1090497_2 Transposase IS200 like K07491 - - 0.0000000003806 68.0
BYDH2_k127_10912356_0 Belongs to the transketolase family K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000004969 233.0
BYDH2_k127_10912356_1 Transaldolase/Fructose-6-phosphate aldolase K00616 - 2.2.1.2 0.000003172 49.0
BYDH2_k127_10925001_0 Elongation factor G C-terminus K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 615.0
BYDH2_k127_10934570_0 Belongs to the DNA glycosylase MPG family K03652 GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 0.000000000000001587 78.0
BYDH2_k127_11041891_0 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 319.0
BYDH2_k127_11041891_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000001129 274.0
BYDH2_k127_11041891_2 metallophosphoesterase K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006478 249.0
BYDH2_k127_11041891_3 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000171 160.0
BYDH2_k127_11041891_4 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000008904 115.0
BYDH2_k127_11041891_5 Uncharacterised protein family UPF0102 K07460 - - 0.00000000000000000005493 93.0
BYDH2_k127_11041891_6 PFAM phosphatidate cytidylyltransferase - - - 0.00000005729 62.0
BYDH2_k127_11041891_7 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00003359 47.0
BYDH2_k127_11109710_0 PHP domain K04486 - 3.1.3.15 0.00000000000003386 77.0
BYDH2_k127_11109710_1 PFAM PKD domain containing protein - - - 0.000000003988 68.0
BYDH2_k127_11153115_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005741 336.0
BYDH2_k127_11153115_1 zinc metalloprotease K11749 - - 0.00000000000000000001168 93.0
BYDH2_k127_11164630_0 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000005547 123.0
BYDH2_k127_11164630_1 - - - - 0.0000000000000000000007265 104.0
BYDH2_k127_11181313_0 Domain of unknown function (DUF4215) - - - 0.000000000000000001876 95.0
BYDH2_k127_11198607_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.404e-202 643.0
BYDH2_k127_11198607_1 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000003909 178.0
BYDH2_k127_11198607_2 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000001212 166.0
BYDH2_k127_11198607_3 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000002979 111.0
BYDH2_k127_11259390_0 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 341.0
BYDH2_k127_11260841_0 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005264 437.0
BYDH2_k127_11260841_1 bacterial (prokaryotic) histone like domain K05788 - - 0.0000000000000000000000000002416 115.0
BYDH2_k127_11289197_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 328.0
BYDH2_k127_11289197_1 TspO/MBR family K05770 - - 0.00000000000000000000000000000000000000000000001226 174.0
BYDH2_k127_11289197_2 Predicted membrane protein (DUF2177) - - - 0.00000000000000000000000000000000000000000005154 163.0
BYDH2_k127_11289197_3 SOUL heme-binding protein - - - 0.000000000000000000000000000000000000008679 153.0
BYDH2_k127_11289197_4 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000000000005932 89.0
BYDH2_k127_11289197_5 Membrane-flanked domain-containing protein - - - 0.0000147 54.0
BYDH2_k127_11289197_6 CDP-alcohol phosphatidyltransferase K00995,K08744 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.41,2.7.8.5 0.0001462 53.0
BYDH2_k127_1181439_0 Major Facilitator Superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 372.0
BYDH2_k127_1181439_1 lysine biosynthetic process via diaminopimelate K00928 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.4 0.0000000000000000000001206 110.0
BYDH2_k127_1181439_2 Belongs to the BI1 family K06890 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000009682 56.0
BYDH2_k127_1194722_0 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000001826 205.0
BYDH2_k127_1194722_1 Membrane protein insertase, YidC Oxa1 family K03217 - - 0.0000000000000000000000000003697 127.0
BYDH2_k127_1194722_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000403 104.0
BYDH2_k127_1194722_3 Putative single-stranded nucleic acids-binding domain K06346 - - 0.00000000000006224 78.0
BYDH2_k127_1194722_4 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000008057 58.0
BYDH2_k127_1194722_5 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000007732 52.0
BYDH2_k127_1194722_6 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0009133 46.0
BYDH2_k127_1199546_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005283 489.0
BYDH2_k127_1201579_0 Flavin containing amine oxidoreductase - - - 0.0000000000121 77.0
BYDH2_k127_1207361_0 - - - - 0.0000002405 54.0
BYDH2_k127_1224185_0 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000735 351.0
BYDH2_k127_1263129_0 ankyrin repeats K06867 - - 0.00000000000000000000002652 117.0
BYDH2_k127_1291069_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.853e-199 637.0
BYDH2_k127_1291069_1 Riboflavin synthase K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.0000000000000000000000000000000000000000000000000004192 190.0
BYDH2_k127_1291069_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000009729 155.0
BYDH2_k127_1291069_3 Belongs to the anti-sigma-factor antagonist family - - - 0.00009894 49.0
BYDH2_k127_135001_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001171 288.0
BYDH2_k127_135001_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00004291 52.0
BYDH2_k127_1372297_0 response regulator - - - 0.0000000000000000000000000000000000000000000000000000002165 202.0
BYDH2_k127_1372297_1 Histidine kinase - - - 0.000000000000000000000000000000000001938 155.0
BYDH2_k127_1384807_0 Belongs to the pyruvate kinase family K00873 GO:0003674,GO:0003824,GO:0004743,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000003527 268.0
BYDH2_k127_1384807_1 MafB19-like deaminase K01487 - 3.5.4.3 0.00001595 48.0
BYDH2_k127_1417003_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003203 286.0
BYDH2_k127_1450197_0 Penicillin-Binding Protein C-terminus Family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005429 291.0
BYDH2_k127_1450197_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0000000000000000000000001553 109.0
BYDH2_k127_1507070_0 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003883 333.0
BYDH2_k127_1511208_0 Represses a number of genes involved in the response to DNA damage (SOS response) K01356 - 3.4.21.88 0.0000000000000000000000000000000000001373 148.0
BYDH2_k127_1527242_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 8.97e-208 670.0
BYDH2_k127_1527242_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000001757 96.0
BYDH2_k127_1535554_0 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000341 162.0
BYDH2_k127_1535554_1 Tetratricopeptide repeat - - - 0.0007996 51.0
BYDH2_k127_1558863_0 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000005941 115.0
BYDH2_k127_1558863_1 Belongs to the peptidase S26 family - - - 0.000000006788 65.0
BYDH2_k127_1558863_2 WG containing repeat - - - 0.00000003053 67.0
BYDH2_k127_1558863_3 Bacterial PH domain K08981 - - 0.00005475 52.0
BYDH2_k127_1660101_0 metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000002405 87.0
BYDH2_k127_1677421_0 PFAM natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 432.0
BYDH2_k127_1677421_1 Catalyzes the conversion of dihydroorotate to orotate K00226,K00254,K02823,K17828 GO:0000166,GO:0003674,GO:0003824,GO:0004152,GO:0004158,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0010181,GO:0016020,GO:0016491,GO:0016627,GO:0016634,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0032553,GO:0034641,GO:0034654,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0048037,GO:0050662,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2,1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000002799 257.0
BYDH2_k127_1677421_2 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.00000000000000000000000000000000000000000000000000000000004374 214.0
BYDH2_k127_1677421_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000002598 109.0
BYDH2_k127_1689847_0 Citrate transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001118 252.0
BYDH2_k127_1689847_1 PFAM CBS domain K07182 - - 0.00000000808 63.0
BYDH2_k127_1696314_0 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003311 271.0
BYDH2_k127_1696314_1 TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2 - - - 0.000005703 54.0
BYDH2_k127_1703000_0 TIGRFAM DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000001074 171.0
BYDH2_k127_1703000_1 PFAM CBS domain - - - 0.00000000000000000000000000025 119.0
BYDH2_k127_1703000_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000001183 87.0
BYDH2_k127_1703000_3 TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2 - - - 0.00001318 55.0
BYDH2_k127_1703000_4 - - - - 0.00006446 47.0
BYDH2_k127_1730104_0 Belongs to the WrbA family K03809 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 345.0
BYDH2_k127_1730104_1 transferase activity, transferring glycosyl groups - - - 0.0001752 49.0
BYDH2_k127_1776381_0 Glycosyl transferases group 1 K12993 - - 0.000000000000000000000000000000000000000000000000000000000000000001734 239.0
BYDH2_k127_1794291_0 General secretory system II, protein E domain protein K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 351.0
BYDH2_k127_1794291_1 Glycosyl transferase, WecB TagA CpsF family K05946 - 2.4.1.187 0.0000000000000000000000000000000000000000000000000001964 196.0
BYDH2_k127_1794291_2 Type II secretion system (T2SS), protein F K02653 - - 0.0000000000000000000000000000000000000000000000004209 191.0
BYDH2_k127_1794291_3 N-acetylmuramoyl-L-alanine amidase - - - 0.000000000000000000000000000000000001849 161.0
BYDH2_k127_1794291_4 COG0500 SAM-dependent methyltransferases - - - 0.000000000000000000003856 103.0
BYDH2_k127_1794623_0 PFAM magnesium chelatase ChlI subunit K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 503.0
BYDH2_k127_1794623_1 PFAM beta-lactamase domain protein K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 446.0
BYDH2_k127_1794623_2 TIGRFAM Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 321.0
BYDH2_k127_1794623_3 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000419 131.0
BYDH2_k127_1794623_4 S23 ribosomal protein - - - 0.000000000000000000000000002371 115.0
BYDH2_k127_1794623_5 PFAM peptidase U32 K08303 - - 0.000000003447 65.0
BYDH2_k127_1844798_0 -O-antigen K02847 - - 0.00000000137 70.0
BYDH2_k127_1905464_0 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009856 434.0
BYDH2_k127_1905464_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000002726 173.0
BYDH2_k127_1905464_2 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000006434 48.0
BYDH2_k127_1951325_0 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000001831 208.0
BYDH2_k127_1951325_1 Sodium/calcium exchanger protein K07301 - - 0.00000000000000000002389 92.0
BYDH2_k127_1957843_0 Peptidase S24-like K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000004474 173.0
BYDH2_k127_1957843_1 DUF218 domain - GO:0003674,GO:0003824 - 0.00000005565 55.0
BYDH2_k127_196718_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 350.0
BYDH2_k127_196718_1 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000001832 256.0
BYDH2_k127_196718_10 GDP-mannose mannosyl hydrolase activity K01515,K03574,K13669,K19710 GO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0043750,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.7.53,3.6.1.13,3.6.1.55 0.00000000000000000000001569 105.0
BYDH2_k127_196718_11 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000003415 101.0
BYDH2_k127_196718_12 PFAM ribosomal protein L17 K02879 - - 0.0000000000000000006318 90.0
BYDH2_k127_196718_13 Belongs to the bacterial ribosomal protein bL36 family K02919 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000009711 65.0
BYDH2_k127_196718_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000001343 247.0
BYDH2_k127_196718_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000002335 186.0
BYDH2_k127_196718_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000003134 157.0
BYDH2_k127_196718_5 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000009963 156.0
BYDH2_k127_196718_6 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000426 146.0
BYDH2_k127_196718_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.0000000000000000000000000000000000006445 148.0
BYDH2_k127_196718_8 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000158 131.0
BYDH2_k127_196718_9 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000003352 106.0
BYDH2_k127_1981455_0 PFAM peptidylprolyl isomerase FKBP-type K03775 - 5.2.1.8 0.0000000000000000000000000000000000000000000000005606 181.0
BYDH2_k127_1981455_1 AI-2E family transporter - - - 0.0000000000000000000009118 95.0
BYDH2_k127_1981455_2 - - - - 0.0003834 46.0
BYDH2_k127_1998326_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 447.0
BYDH2_k127_201323_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.00008123 52.0
BYDH2_k127_2033113_0 IPT/TIG domain - - - 0.000001425 59.0
BYDH2_k127_2058209_0 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000522 108.0
BYDH2_k127_2058209_1 Polysaccharide pyruvyl transferase - - - 0.000003436 55.0
BYDH2_k127_2071972_0 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 332.0
BYDH2_k127_2071972_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000001371 134.0
BYDH2_k127_2127480_0 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000001104 206.0
BYDH2_k127_218809_0 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000024 157.0
BYDH2_k127_218809_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000002247 159.0
BYDH2_k127_218809_2 SNARE associated Golgi protein K19302 - 3.6.1.27 0.0000000000000000000000000001227 132.0
BYDH2_k127_218809_3 TIGRFAM arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000005394 89.0
BYDH2_k127_218809_4 S-layer homology domain - - - 0.0000000006096 66.0
BYDH2_k127_2199294_0 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000000000000000000000001472 187.0
BYDH2_k127_2199294_1 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000005341 153.0
BYDH2_k127_2350108_0 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K01227 - 3.2.1.96 0.0000000009415 69.0
BYDH2_k127_2368839_0 DNA polymerase K02337,K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008691 371.0
BYDH2_k127_2466005_0 SMART PUA domain containing protein K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 294.0
BYDH2_k127_2466005_1 - - - - 0.0000000000005299 80.0
BYDH2_k127_2466005_2 - - - - 0.00000000041 71.0
BYDH2_k127_2489193_0 thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.00000000000000000000000000000000000002052 149.0
BYDH2_k127_2489193_1 IPT/TIG domain - - - 0.000000000000000000000000003466 124.0
BYDH2_k127_2504244_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000002334 152.0
BYDH2_k127_2541409_0 Protein of unknown function (DUF4256) - - - 0.000000000000000000000000002862 119.0
BYDH2_k127_2541409_1 Histidine kinase - - - 0.00000006961 61.0
BYDH2_k127_25433_0 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000002744 180.0
BYDH2_k127_25433_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000008906 100.0
BYDH2_k127_2597276_0 Belongs to the DEAD box helicase family K05592,K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008432 469.0
BYDH2_k127_2597276_1 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 366.0
BYDH2_k127_2597276_2 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000009983 231.0
BYDH2_k127_2597276_3 Metal-sensitive transcriptional repressor K21600 - - 0.000000000003247 70.0
BYDH2_k127_2597276_4 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 0.000003571 52.0
BYDH2_k127_2597276_5 Heavy metal transport detoxification protein - - - 0.000009071 59.0
BYDH2_k127_2629070_0 PFAM Exonuclease, RNase T and DNA polymerase III K02342,K03722 - 2.7.7.7,3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 493.0
BYDH2_k127_2673888_0 Belongs to the 'phage' integrase family K04763 - - 0.000000000000000000000000000000000000000000000000007194 192.0
BYDH2_k127_2673888_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000000000000000000000000001421 125.0
BYDH2_k127_2673888_2 Smr domain - - - 0.000000000000001477 83.0
BYDH2_k127_2673888_3 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0000000000002306 78.0
BYDH2_k127_2679299_0 sulfurtransferase activity K00566 GO:0001510,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004808,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016782,GO:0016783,GO:0030488,GO:0032259,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 393.0
BYDH2_k127_2679299_1 to multidrug resistance ABC transporter ATP-binding protein K06147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 381.0
BYDH2_k127_2679299_2 Putative RNA methylase family UPF0020 - - - 0.00000000000000000000000003847 122.0
BYDH2_k127_2689381_0 FG-GAP repeat - - - 0.00000000000000000000008401 115.0
BYDH2_k127_2723906_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001865 284.0
BYDH2_k127_2723906_1 trisaccharide binding - - - 0.0000002148 59.0
BYDH2_k127_2751321_0 Type II secretion system (T2SS), protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000006328 221.0
BYDH2_k127_2761702_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 588.0
BYDH2_k127_2761702_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009449 397.0
BYDH2_k127_2761702_2 cellulose binding K01179,K01218 GO:0003674,GO:0005488,GO:0005515,GO:0042802 3.2.1.4,3.2.1.78 0.00000007107 65.0
BYDH2_k127_2780562_0 malic enzyme K00027 - 1.1.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009024 494.0
BYDH2_k127_2780562_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000217 209.0
BYDH2_k127_2780562_2 - - GO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009987,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019432,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576 - 0.0005076 46.0
BYDH2_k127_2827981_0 Peptidoglycan-binding LysM - - - 0.00000000000000000000000000000000000000000000004336 184.0
BYDH2_k127_2827981_1 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000008602 186.0
BYDH2_k127_2827981_2 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000001001 83.0
BYDH2_k127_2827981_3 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000003088 57.0
BYDH2_k127_2836688_0 Natural resistance-associated macrophage protein K03322 - - 1.552e-194 614.0
BYDH2_k127_2836688_1 methylamine metabolic process K03885,K15977 - 1.6.99.3 0.00000000000000000000000000000000003079 138.0
BYDH2_k127_2836688_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070930,GO:0071704,GO:1901564 - 0.0000000000000000000000000000000001207 137.0
BYDH2_k127_2836688_3 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000007627 136.0
BYDH2_k127_2836688_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.0000000000000844 74.0
BYDH2_k127_285325_0 NYN domain - - - 0.000000000000000000000000000000000000000000000000000005572 196.0
BYDH2_k127_285325_1 - - - - 0.0000000000002778 72.0
BYDH2_k127_2861259_0 Elongation factor P (EF-P) OB domain K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000008835 171.0
BYDH2_k127_2861259_1 Carbohydrate family 9 binding domain-like K01181 - 3.2.1.8 0.00000000000000000001525 108.0
BYDH2_k127_2861259_2 Chitobiase/beta-hexosaminidase C-terminal domain - - - 0.000000000007063 79.0
BYDH2_k127_2870013_0 ATPases associated with a variety of cellular activities K09817 - - 0.0000000000000000000000000000000000000000000000000000000000000000002807 236.0
BYDH2_k127_2870013_1 ABC-type Mn2 Zn2 transport K09816 - - 0.0000000000000000000000000000000000000000000000000000000000000001436 229.0
BYDH2_k127_2870013_2 Histidine kinase - - - 0.000000000000000000000000000000000002797 148.0
BYDH2_k127_2870013_3 Transcriptional regulatory protein, C terminal K07658 - - 0.0000000000000005999 83.0
BYDH2_k127_2870013_4 response regulator - - - 0.0000000000000006068 82.0
BYDH2_k127_2920920_0 Bacterial Ig-like domain (group 1) - - - 0.00000004715 65.0
BYDH2_k127_2920920_1 domain protein K01179,K12567,K20276 - 2.7.11.1,3.2.1.4 0.0006353 52.0
BYDH2_k127_2940795_0 Nudix (Nucleoside diphosphate linked moiety X)-type motif 1 K03574,K17816 GO:0000003,GO:0001669,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006259,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007154,GO:0007275,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008406,GO:0008413,GO:0008584,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022414,GO:0030141,GO:0030515,GO:0031090,GO:0031410,GO:0031668,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0036219,GO:0042221,GO:0042262,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044713,GO:0044714,GO:0045137,GO:0046060,GO:0046061,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046546,GO:0046661,GO:0046686,GO:0046700,GO:0047429,GO:0047693,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0055086,GO:0061458,GO:0070013,GO:0071496,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0090304,GO:0097159,GO:0097223,GO:0097708,GO:0099503,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.6.1.55,3.6.1.56 0.000000000000000000000000000000000000000000000000000000001382 205.0
BYDH2_k127_2940795_1 Domain of unknown function (DUF296) K06934 - - 0.0000000000000000000000000000000629 130.0
BYDH2_k127_2940795_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000007298 50.0
BYDH2_k127_2944282_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 387.0
BYDH2_k127_2944282_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 340.0
BYDH2_k127_2944282_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000185 273.0
BYDH2_k127_2944282_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000001425 169.0
BYDH2_k127_2944282_4 peptidase activity - - - 0.000000000002725 76.0
BYDH2_k127_300956_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007216 479.0
BYDH2_k127_3032658_0 Belongs to the methyltransferase superfamily K07444 - - 0.00000000000000000000000000000000000000000000000000000001815 201.0
BYDH2_k127_3032658_1 PFAM FecR protein - - - 0.0000124 56.0
BYDH2_k127_3039706_0 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 302.0
BYDH2_k127_3039706_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000003558 116.0
BYDH2_k127_3106522_0 COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02243,K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003346 248.0
BYDH2_k127_3106522_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000005443 227.0
BYDH2_k127_3106522_2 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000001207 147.0
BYDH2_k127_3249146_0 Insecticidal toxin complex - - - 0.00000000000000000000000000000000000000000000000000000000000000000002661 267.0
BYDH2_k127_3249146_1 Fibronectin type III domain - - - 0.00000000001763 79.0
BYDH2_k127_3256258_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000005328 123.0
BYDH2_k127_3256258_1 translation release factor activity K03462,K11428 GO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0015934,GO:0016020,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0070013,GO:0070126,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112 2.1.1.43,2.4.2.12 0.00000000000000000004977 94.0
BYDH2_k127_3324620_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000001445 243.0
BYDH2_k127_3324620_1 PFAM conserved K06966 - 3.2.2.10 0.000000000000976 71.0
BYDH2_k127_3335781_0 Transcriptional regulator, TrmB - - - 0.000000000000000007814 93.0
BYDH2_k127_3335781_1 - - - - 0.0000000000000001225 89.0
BYDH2_k127_336777_0 Domain of unknown function(DUF2779) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002736 284.0
BYDH2_k127_336777_1 MazG-like family - - - 0.000000000000000000000000000000638 124.0
BYDH2_k127_336777_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0016020,GO:0030312,GO:0032991,GO:0033554,GO:0040007,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071944,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.0000000000000000001282 90.0
BYDH2_k127_3387568_0 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000001019 228.0
BYDH2_k127_3387568_1 PFAM glycosyl transferase family 51 K05366,K21464 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000002502 195.0
BYDH2_k127_3398753_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004799 286.0
BYDH2_k127_3398753_1 PFAM periplasmic copper-binding - - - 0.0000000000002023 81.0
BYDH2_k127_3409059_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005492 389.0
BYDH2_k127_3411879_0 septum formation protein Maf K06287 GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0030428,GO:0032506,GO:0044085,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0090529,GO:1902410,GO:1903047 - 0.0000000000000000000000000000000000009018 146.0
BYDH2_k127_3411879_1 Belongs to the peptidase S41A family K03797 GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0009653,GO:0009987,GO:0016787,GO:0019538,GO:0023052,GO:0030154,GO:0030288,GO:0030313,GO:0030435,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043603,GO:0043900,GO:0043902,GO:0043934,GO:0044237,GO:0044238,GO:0044464,GO:0046983,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0140096,GO:1900190,GO:1900192,GO:1901564 3.4.21.102 0.0000000000000000000000004099 107.0
BYDH2_k127_3420431_0 Belongs to the ClpA ClpB family K03696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004849 365.0
BYDH2_k127_3421392_0 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.000000000000000000000000000000001291 145.0
BYDH2_k127_3421392_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000005761 87.0
BYDH2_k127_3507519_0 TIGRFAM Acetate-CoA ligase K01895 - 6.2.1.1 1.976e-231 732.0
BYDH2_k127_3507519_1 Domain of unknown function (DUF5122) beta-propeller - - - 0.00000000000000000000001871 115.0
BYDH2_k127_3507630_0 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 315.0
BYDH2_k127_3507630_1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.00002848 49.0
BYDH2_k127_3547561_0 Fibronectin type III domain protein - - - 0.0001 51.0
BYDH2_k127_3562908_0 guanyl-nucleotide exchange factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000005556 228.0
BYDH2_k127_3562908_1 Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR) - - - 0.00000000006514 76.0
BYDH2_k127_3731095_0 Ribosomal L27 protein K02899 - - 0.0000000000000000000000000065 114.0
BYDH2_k127_3774498_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006244 362.0
BYDH2_k127_3774498_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000003612 254.0
BYDH2_k127_3774498_2 Hsp20/alpha crystallin family K13993 - - 0.0000000000003409 76.0
BYDH2_k127_3845173_0 Protein of unknown function (DUF541) K09807 - - 0.000000000000000000000000000000000001195 149.0
BYDH2_k127_3880916_0 Sigma-54 interaction domain K03696 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004411 392.0
BYDH2_k127_3880916_1 PFAM tRNA rRNA methyltransferase (SpoU) - - - 0.0000000000000000000000000000000000000000004616 163.0
BYDH2_k127_3880916_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000001896 75.0
BYDH2_k127_3880916_3 HAT (Half-A-TPR) repeats - - - 0.000006774 55.0
BYDH2_k127_3880916_4 signal transduction histidine kinase K13587 - 2.7.13.3 0.00002414 53.0
BYDH2_k127_3905052_0 YibE/F-like protein - - - 0.00000000000000005002 91.0
BYDH2_k127_3928234_0 Glycogen debranching enzyme K05988 - 3.2.1.11 0.00000000000000000000000002919 120.0
BYDH2_k127_3932210_1 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000002943 53.0
BYDH2_k127_3959404_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 1.876e-243 781.0
BYDH2_k127_3959404_1 - - - - 0.00000000006302 72.0
BYDH2_k127_3963083_0 D5 N terminal like K06919 - - 0.0000000000000000000000000000000000000000000000000000000000000001129 241.0
BYDH2_k127_4002665_0 PFAM pentapeptide repeat protein - - - 0.0000000000000000000000000000000000002034 147.0
BYDH2_k127_4002665_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000145 69.0
BYDH2_k127_4005529_0 Stage II sporulation protein E K07315 - 3.1.3.3 0.0000000000000000000000000000000007811 145.0
BYDH2_k127_4005529_1 type II secretion system protein G K02456 - - 0.0007468 52.0
BYDH2_k127_4067913_0 S-layer homology domain - - - 0.000000000000000001712 103.0
BYDH2_k127_4067913_1 chlorophyll binding - - - 0.0000000006468 75.0
BYDH2_k127_4118537_0 Response regulator receiver - - - 0.000000000000000000000000000000000000001575 151.0
BYDH2_k127_4118537_1 AAA domain - - - 0.000000003826 63.0
BYDH2_k127_4178230_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1286.0
BYDH2_k127_4178230_1 PFAM ATP corrinoid adenosyltransferase BtuR CobO CobP K19221 - 2.5.1.17 0.000000000000000000000000000005457 127.0
BYDH2_k127_4178230_2 UPF0489 domain - - - 0.0000000000000000000000001702 111.0
BYDH2_k127_41883_0 ABC-2 type transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 531.0
BYDH2_k127_4199070_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 317.0
BYDH2_k127_4199070_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000002035 164.0
BYDH2_k127_4214490_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 565.0
BYDH2_k127_4230900_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 359.0
BYDH2_k127_4230900_1 Dienelactone hydrolase - - - 0.00000001028 58.0
BYDH2_k127_4230900_2 PFAM PRC-barrel domain - - - 0.00001081 55.0
BYDH2_k127_4269303_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008702 411.0
BYDH2_k127_428675_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 GO:0001505,GO:0003674,GO:0003824,GO:0004372,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006546,GO:0006563,GO:0006565,GO:0006730,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009070,GO:0009071,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019264,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042133,GO:0042135,GO:0042136,GO:0042737,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0065007,GO:0065008,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 524.0
BYDH2_k127_428675_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576 2.7.7.7 0.0000000001829 71.0
BYDH2_k127_4305295_0 Acetyl-CoA hydrolase transferase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 386.0
BYDH2_k127_4319323_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007215 246.0
BYDH2_k127_4319323_1 Cation transporter/ATPase, N-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000001254 226.0
BYDH2_k127_4342081_0 fructose-bisphosphate aldolase activity K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 421.0
BYDH2_k127_4342081_1 LemA family K03744 - - 0.0002209 47.0
BYDH2_k127_4402234_0 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000003064 88.0
BYDH2_k127_4402234_1 KH domain K06960 - - 0.0000000000023 71.0
BYDH2_k127_4402234_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000002615 54.0
BYDH2_k127_4402625_0 histone acetyltransferase, ELP3 family K07739 - 2.3.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007699 381.0
BYDH2_k127_4402625_1 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000001612 154.0
BYDH2_k127_4493159_0 Putative glycosyl hydrolase domain - - - 0.000000000000000000000000000000000000000000000003182 186.0
BYDH2_k127_4507052_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 365.0
BYDH2_k127_4507052_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000001406 199.0
BYDH2_k127_4537829_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 546.0
BYDH2_k127_4537829_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000001907 238.0
BYDH2_k127_4537829_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000001868 198.0
BYDH2_k127_4598011_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000001204 178.0
BYDH2_k127_4616239_0 DEAD DEAH box helicase K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 455.0
BYDH2_k127_4616239_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 343.0
BYDH2_k127_4616239_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.00000000000000000000000000001659 124.0
BYDH2_k127_4616239_3 ORF6N domain - - - 0.00000000000000000000000004442 111.0
BYDH2_k127_4616239_4 ORF6N domain - - - 0.0000000000002749 73.0
BYDH2_k127_4629599_0 Hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000008675 207.0
BYDH2_k127_4629599_1 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000006325 110.0
BYDH2_k127_4678496_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000317 204.0
BYDH2_k127_4692510_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000003698 77.0
BYDH2_k127_4748280_0 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.000000000000000000000000000000000000000002082 158.0
BYDH2_k127_4748280_1 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000003975 164.0
BYDH2_k127_4748280_2 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000006018 115.0
BYDH2_k127_4785299_0 helicase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 378.0
BYDH2_k127_4785299_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000003878 194.0
BYDH2_k127_4789302_0 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 418.0
BYDH2_k127_4789302_1 glucan 1,4-alpha-glucosidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000994 344.0
BYDH2_k127_4869839_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000834 259.0
BYDH2_k127_4869839_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000002499 215.0
BYDH2_k127_4869839_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.0000000000000008605 83.0
BYDH2_k127_4869839_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000002127 72.0
BYDH2_k127_4869839_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00001419 54.0
BYDH2_k127_4882367_0 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003327 278.0
BYDH2_k127_4945698_0 Belongs to the LDH MDH superfamily. LDH family K00016 - 1.1.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002454 276.0
BYDH2_k127_4945698_1 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000111 243.0
BYDH2_k127_4963035_0 peptidyl-prolyl cis-trans isomerase K03773 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005623,GO:0006457,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009279,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044462,GO:0044464,GO:0071704,GO:0071944,GO:0140096,GO:1901564 5.2.1.8 0.0003865 49.0
BYDH2_k127_4974595_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000006735 234.0
BYDH2_k127_4978931_0 Lytic transglycolase K03642 - - 0.000000000000000000000003741 114.0
BYDH2_k127_5013985_0 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000000000000111 103.0
BYDH2_k127_5013985_1 Polysaccharide biosynthesis protein - - - 0.000000000001554 75.0
BYDH2_k127_5013985_3 Protein of unknown function (DUF1361) - - - 0.00009549 48.0
BYDH2_k127_5023732_0 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000002677 178.0
BYDH2_k127_5023732_1 O-Antigen ligase K18814 - - 0.00000000004795 76.0
BYDH2_k127_5023732_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000006667 63.0
BYDH2_k127_5057567_0 DNA polymerase X family K02347,K04477 - - 0.000001407 53.0
BYDH2_k127_5058147_0 Alanine racemase, N-terminal domain - - - 0.000000000000000000000000000000000000000000002275 175.0
BYDH2_k127_5058147_1 pseudouridine synthase activity K06177,K06179,K06180 - 5.4.99.23,5.4.99.24,5.4.99.28,5.4.99.29 0.00000000000003027 75.0
BYDH2_k127_50686_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 399.0
BYDH2_k127_5129759_0 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000004707 162.0
BYDH2_k127_5129759_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.000000000000000000000000000001002 124.0
BYDH2_k127_5129759_2 membrane K03748 - - 0.00000000000000000000000000004198 124.0
BYDH2_k127_5129759_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000007203 75.0
BYDH2_k127_5175315_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000008992 186.0
BYDH2_k127_5175315_1 protein serine/threonine phosphatase activity - - - 0.0004464 51.0
BYDH2_k127_5249874_0 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000001062 214.0
BYDH2_k127_5259281_0 ATP-grasp domain K14755 - 6.3.2.11 0.0000000000000000000000000000005627 132.0
BYDH2_k127_5267201_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 290.0
BYDH2_k127_5267201_1 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000009354 153.0
BYDH2_k127_5299051_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000561 94.0
BYDH2_k127_5299051_1 Glycosyl transferase 4-like domain - - - 0.000000009053 58.0
BYDH2_k127_5355272_0 UV-endonuclease UvdE K13281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009467 246.0
BYDH2_k127_5355272_1 - - - - 0.00000000000000000000000000009824 124.0
BYDH2_k127_5359131_0 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.0000000000000000000000000000008739 124.0
BYDH2_k127_5359131_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000004639 81.0
BYDH2_k127_5359131_2 COG1651 Protein-disulfide isomerase K21990 - - 0.000000000000004235 85.0
BYDH2_k127_5359131_3 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919,K16924 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.00000002804 64.0
BYDH2_k127_5371548_0 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.00001372 57.0
BYDH2_k127_5384960_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000008489 83.0
BYDH2_k127_5388217_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 614.0
BYDH2_k127_5393873_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000001742 178.0
BYDH2_k127_5393873_1 diguanylate cyclase - - - 0.00000000000000004891 85.0
BYDH2_k127_5407858_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 373.0
BYDH2_k127_5407858_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000376 219.0
BYDH2_k127_5407858_2 PFAM O-antigen polymerase - - - 0.00000001114 68.0
BYDH2_k127_5433936_0 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000006327 145.0
BYDH2_k127_5433936_1 Domain of unknown function (DUF4131) K02238 - - 0.000000000008565 72.0
BYDH2_k127_5449770_0 S-layer homology domain - - - 0.0000000000000000002638 94.0
BYDH2_k127_5466840_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000841 532.0
BYDH2_k127_5484967_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1077.0
BYDH2_k127_5484967_1 helix_turn_helix, cAMP Regulatory protein K10914,K21563 - - 0.000003079 51.0
BYDH2_k127_5512943_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 1.687e-220 700.0
BYDH2_k127_5623552_0 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000005076 171.0
BYDH2_k127_5623552_1 SMART PDZ DHR GLGF domain protein K11749 - - 0.0000000000000000000000000007478 124.0
BYDH2_k127_5649171_0 Protein of unknown function (DUF4012) - - - 0.00000000000000000000000000000001054 142.0
BYDH2_k127_5722109_0 Transcriptional regulator, TrmB - - - 0.0000000000000000000015 104.0
BYDH2_k127_5722109_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000009972 87.0
BYDH2_k127_5749272_0 amine dehydrogenase activity - - - 0.0001622 51.0
BYDH2_k127_576049_0 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000003824 130.0
BYDH2_k127_576049_1 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000002888 105.0
BYDH2_k127_5826946_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 1.586e-196 630.0
BYDH2_k127_5826946_1 ABC transporter, permease protein K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007401 263.0
BYDH2_k127_5826946_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000001377 144.0
BYDH2_k127_5826946_3 Protein of unknown function (DUF559) K07458 - - 0.0000000000000000000000000000000000008296 146.0
BYDH2_k127_5826946_4 PFAM Hemerythrin HHE cation binding domain protein K07216 - - 0.0000000000000000003989 92.0
BYDH2_k127_590575_0 Sel1-like repeats. - - - 0.0000000000000000000000000000000000000000000008134 171.0
BYDH2_k127_5983130_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008112 404.0
BYDH2_k127_5983130_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000001087 233.0
BYDH2_k127_5985019_0 Membrane-associated protein - - - 0.00000000000000000000000000000000001072 142.0
BYDH2_k127_5985019_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000002911 121.0
BYDH2_k127_6037971_0 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003916 276.0
BYDH2_k127_6078268_0 PFAM ComEC Rec2-related protein K02238 - - 0.00000000000000000000000000000000000000000000000000005751 199.0
BYDH2_k127_6103600_0 Methicillin resistance protein K05363,K11693 - 2.3.2.10,2.3.2.16 0.00000000000000000000000000000000000000004495 165.0
BYDH2_k127_6103600_1 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000001125 132.0
BYDH2_k127_6103600_2 Phosphoribosylglycinamide formyltransferase K00601 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.1.2.2 0.000000007515 61.0
BYDH2_k127_6103600_3 PFAM Bile acid sodium symporter K03453 - - 0.0000004328 61.0
BYDH2_k127_6178795_0 PAP2 superfamily C-terminal - - - 0.00000000000000000000000000000000000000000001715 169.0
BYDH2_k127_6178795_1 - - - - 0.0000000000000000000001463 100.0
BYDH2_k127_6178795_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00001525 58.0
BYDH2_k127_6178795_3 - - - - 0.0002689 46.0
BYDH2_k127_6178795_4 PFAM GIY-YIG catalytic domain K07461 - - 0.000695 46.0
BYDH2_k127_618626_0 SMART zinc finger, CDGSH-type domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005805 249.0
BYDH2_k127_618626_1 SelR domain K07305,K12267 GO:0003674,GO:0003824,GO:0008113,GO:0008150,GO:0008152,GO:0009405,GO:0016491,GO:0016667,GO:0016671,GO:0044419,GO:0051704,GO:0055114 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000005038 228.0
BYDH2_k127_618626_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000006471 218.0
BYDH2_k127_6210392_0 translation elongation factor activity K02358,K15771 GO:0001666,GO:0001817,GO:0001819,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009274,GO:0009275,GO:0009628,GO:0009986,GO:0010035,GO:0010038,GO:0010039,GO:0010339,GO:0016020,GO:0019899,GO:0022610,GO:0030312,GO:0032677,GO:0032757,GO:0032879,GO:0032880,GO:0035375,GO:0035821,GO:0036293,GO:0040007,GO:0042221,GO:0044003,GO:0044068,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044426,GO:0044444,GO:0044462,GO:0044464,GO:0044650,GO:0044651,GO:0048518,GO:0048522,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051701,GO:0051704,GO:0051817,GO:0065007,GO:0070201,GO:0070482,GO:0071944,GO:0090087,GO:1903530,GO:1903532,GO:1904951,GO:2000482,GO:2000484 - 7.358e-201 632.0
BYDH2_k127_6210392_1 HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.0000000000000000000000000000000001219 141.0
BYDH2_k127_6210392_2 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000002701 131.0
BYDH2_k127_6210392_3 23S rRNA-intervening sequence protein - - - 0.000000001023 64.0
BYDH2_k127_6226484_0 Ergosterol biosynthesis ERG4/ERG24 family - - - 0.00000000000000000000000000000000000000000000000003757 187.0
BYDH2_k127_6248894_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 413.0
BYDH2_k127_6248894_1 Belongs to the dCTP deaminase family K01494 GO:0003674,GO:0003824,GO:0004170,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0019239,GO:0033973,GO:0047429 3.5.4.13 0.000000000000000000000000000000003664 132.0
BYDH2_k127_6318183_0 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000001386 74.0
BYDH2_k127_6318183_1 O-Antigen ligase - - - 0.00000000008173 74.0
BYDH2_k127_6318971_0 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000001101 164.0
BYDH2_k127_6318971_1 COG0477 Permeases of the major facilitator superfamily K08153 - - 0.0001126 50.0
BYDH2_k127_6325571_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000002919 238.0
BYDH2_k127_6325571_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000001206 137.0
BYDH2_k127_6407632_0 Tail protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467 299.0
BYDH2_k127_6407632_1 DNA circulation protein - - - 0.00000000000000003459 85.0
BYDH2_k127_6407632_2 Bacteriophage Mu Gp45 protein - - - 0.00000000000001533 76.0
BYDH2_k127_6442281_0 WLM domain K07043 - - 0.000000000000000000000000000000000000000002288 164.0
BYDH2_k127_6442281_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000003607 138.0
BYDH2_k127_6442281_2 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0010340,GO:0016053,GO:0016740,GO:0016741,GO:0016787,GO:0016788,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032259,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0052689,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.197 0.00000000000000001132 90.0
BYDH2_k127_6442281_3 Alpha/beta hydrolase family - - - 0.00002123 56.0
BYDH2_k127_6451349_0 PFAM Methyltransferase K00563 - 2.1.1.187 0.000000000000000000000000000000000000000000000000000000000000001285 228.0
BYDH2_k127_6451349_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.0000000000000001502 85.0
BYDH2_k127_6479723_0 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000003571 201.0
BYDH2_k127_6479723_1 Prokaryotic N-terminal methylation motif K02456 - - 0.0000005439 53.0
BYDH2_k127_6500667_0 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004548 350.0
BYDH2_k127_6514280_0 COG1225 Peroxiredoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000001775 183.0
BYDH2_k127_6514280_1 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000001023 111.0
BYDH2_k127_6514280_2 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.00000000000000000000001268 103.0
BYDH2_k127_6531809_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000512 164.0
BYDH2_k127_6531809_1 S23 ribosomal protein - - - 0.00000000000000000000000000005537 119.0
BYDH2_k127_6531809_2 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000003517 69.0
BYDH2_k127_65823_0 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006339 287.0
BYDH2_k127_65823_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000000000000131 192.0
BYDH2_k127_65823_2 Cysteine-rich secretory protein family - - - 0.0000000000000009079 91.0
BYDH2_k127_6640051_0 Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four- carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009223 496.0
BYDH2_k127_6640051_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002522 281.0
BYDH2_k127_6640051_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000001213 208.0
BYDH2_k127_6640051_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.00000000000000000000000000000000000000001134 158.0
BYDH2_k127_6640051_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000002415 78.0
BYDH2_k127_6654840_0 phage tail tape measure protein - - - 0.00000000000000000000000000000000000005461 155.0
BYDH2_k127_6729472_0 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000002699 250.0
BYDH2_k127_6729472_1 Ribosomal protein S1 K02945 - - 0.00000000000000000000000000000000000000000003254 170.0
BYDH2_k127_6857807_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001902 281.0
BYDH2_k127_6857807_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000003065 100.0
BYDH2_k127_6865722_0 beta-lactamase domain protein K02238 - - 0.000000000000000000000000000000000000000007042 164.0
BYDH2_k127_6865722_1 HAD-hyrolase-like - - - 0.000000000000746 80.0
BYDH2_k127_6865722_2 Belongs to the peptidase S8 family - - - 0.000002098 60.0
BYDH2_k127_6865722_3 Nucleotidyl transferase K00966 GO:0000032,GO:0003674,GO:0003824,GO:0004475,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006056,GO:0006057,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008905,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009272,GO:0009298,GO:0009653,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019538,GO:0019673,GO:0030154,GO:0030435,GO:0031506,GO:0032502,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042546,GO:0043170,GO:0043412,GO:0043413,GO:0043934,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0048646,GO:0048856,GO:0048869,GO:0051286,GO:0055086,GO:0070085,GO:0070568,GO:0070589,GO:0070590,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.13 0.00007403 48.0
BYDH2_k127_688185_0 Protein of unknown function (DUF4012) - - - 0.00000000000000000000000006193 124.0
BYDH2_k127_6900120_0 KR domain K00065 - 1.1.1.127 0.000000000000000000000000000000000000000000000000000000000002598 217.0
BYDH2_k127_6900120_1 base-excision repair K03575 - - 0.000000000000000000002109 96.0
BYDH2_k127_6900351_0 Sodium/calcium exchanger protein K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006644 260.0
BYDH2_k127_6900351_1 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.00000000000000000000000003842 123.0
BYDH2_k127_6938189_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 317.0
BYDH2_k127_7000383_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000002943 131.0
BYDH2_k127_7075774_0 Binds to the 23S rRNA K02939 - - 0.0000000000000000000265 95.0
BYDH2_k127_7075774_1 Abc transporter K02035 - - 0.00000000000000796 87.0
BYDH2_k127_7084576_0 alkylbase DNA N-glycosylase activity K03652 - 3.2.2.21 0.00000000000000000000000000000000002203 136.0
BYDH2_k127_709953_0 S-layer homology domain - - - 0.00000000000000003488 96.0
BYDH2_k127_709953_1 Anti-sigma factor N-terminus - - - 0.00000005579 66.0
BYDH2_k127_7113625_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 2.356e-280 885.0
BYDH2_k127_7113739_0 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000008494 220.0
BYDH2_k127_7113739_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000003747 209.0
BYDH2_k127_7113739_2 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000026 203.0
BYDH2_k127_7113739_3 Vitamin K epoxide reductase family - - - 0.0004157 50.0
BYDH2_k127_7113739_4 PurA ssDNA and RNA-binding protein - - - 0.0004734 47.0
BYDH2_k127_7152501_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 541.0
BYDH2_k127_7152501_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000005058 152.0
BYDH2_k127_7152501_2 Glycosyltransferase like family 2 - - - 0.00000000009253 65.0
BYDH2_k127_7160177_0 PhnA Zinc-Ribbon K06193 - - 0.00000000000000003182 89.0
BYDH2_k127_7160177_1 Rhodanese Homology Domain - - - 0.00001955 52.0
BYDH2_k127_7202125_0 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.0000000000000000000000000000006968 136.0
BYDH2_k127_7226409_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 353.0
BYDH2_k127_7226409_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 286.0
BYDH2_k127_7226409_2 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000001673 217.0
BYDH2_k127_7226409_3 SMART Metal-dependent phosphohydrolase, HD region K07023 - - 0.0000000000000000000051 102.0
BYDH2_k127_7226409_4 Ribosomal protein S6 K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0015935,GO:0016020,GO:0019843,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0071944,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000001626 83.0
BYDH2_k127_7226409_5 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000006255 74.0
BYDH2_k127_7226409_6 Domain of unknown function (DUF4340) - - - 0.0007884 49.0
BYDH2_k127_7285041_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000005702 117.0
BYDH2_k127_7285041_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - 0.00002191 47.0
BYDH2_k127_7309285_0 Cation transport ATPase (P-type) K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 597.0
BYDH2_k127_7309285_1 AI-2E family transporter - - - 0.0000000000000000000000000000000003615 145.0
BYDH2_k127_7309285_2 Belongs to the FtsK SpoIIIE SftA family K03466 - - 0.000004031 55.0
BYDH2_k127_7378979_0 TIGRFAM penicillin-binding protein, 1A family K05366 - 2.4.1.129,3.4.16.4 0.000000000000005817 88.0
BYDH2_k127_7378979_1 Belongs to the peptidase S8 family - - - 0.00000000001172 77.0
BYDH2_k127_7445534_0 Psort location Cytoplasmic, score 9.98 K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000001962 258.0
BYDH2_k127_7468975_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005154 371.0
BYDH2_k127_747192_0 - - - - 0.0000000000000000000000000002461 117.0
BYDH2_k127_747192_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000005479 114.0
BYDH2_k127_747192_2 Transcriptional regulator - - - 0.0000000002397 63.0
BYDH2_k127_7472595_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003412 374.0
BYDH2_k127_7472595_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 352.0
BYDH2_k127_7472595_2 Aspartate carbamoyltransferase K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009852 318.0
BYDH2_k127_7472595_3 Amidohydrolase - - - 0.0000000000000000000000000000865 129.0
BYDH2_k127_7491148_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 574.0
BYDH2_k127_7491148_1 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004734 282.0
BYDH2_k127_7491148_2 S-layer homology domain - - - 0.000001128 54.0
BYDH2_k127_7546135_0 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.0000000000000008186 84.0
BYDH2_k127_7548919_0 protein histidine kinase activity K01768,K02484,K07636,K10681,K10819,K18350,K20487 - 2.7.13.3,4.6.1.1 0.0000000000000000000000000000000000000000002964 171.0
BYDH2_k127_7548919_1 response regulator - - - 0.00000000000000000001138 97.0
BYDH2_k127_7548919_2 GAF domain - - - 0.00000000000003796 75.0
BYDH2_k127_7548919_3 Histidine kinase - - - 0.00001081 55.0
BYDH2_k127_7549881_0 COG0451 Nucleoside-diphosphate-sugar epimerases K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000003901 166.0
BYDH2_k127_7581672_0 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.00000000000000000000000000000005871 137.0
BYDH2_k127_7581672_1 CYTH domain K05873 - 4.6.1.1 0.0000000000000000000000009477 107.0
BYDH2_k127_7585644_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000002883 188.0
BYDH2_k127_7585644_1 PFAM von Willebrand factor type A domain K07114 - - 0.00000000000000000000000000000000000000001101 177.0
BYDH2_k127_7585644_2 Fibronectin type III domain - - - 0.00003015 56.0
BYDH2_k127_7585644_3 PFAM sugar transferase - - - 0.00003386 56.0
BYDH2_k127_7585655_0 DJ-1/PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000006229 126.0
BYDH2_k127_7611035_0 Penicillin-binding Protein dimerisation domain K03587,K08384 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 322.0
BYDH2_k127_7675825_0 tRNA nucleotidyltransferase poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 366.0
BYDH2_k127_7675825_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000006602 190.0
BYDH2_k127_7675825_2 protein secretion by the type IV secretion system - - - 0.0001246 53.0
BYDH2_k127_7679154_0 Acid phosphatase vanadium-dependent haloperoxidase related K09775 - - 0.0000000000000000000001657 102.0
BYDH2_k127_7679154_1 - - - - 0.000000000666 66.0
BYDH2_k127_7731426_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 343.0
BYDH2_k127_7731426_1 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000000000000000000000000000000000000001501 203.0
BYDH2_k127_7731426_2 YceI-like domain - - - 0.0000000000000000000000000000000000000000009404 164.0
BYDH2_k127_7731426_3 Cold shock K03704 - - 0.0000000000001942 72.0
BYDH2_k127_77597_0 protein secretion by the type IV secretion system - - - 0.0006794 49.0
BYDH2_k127_7788828_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 370.0
BYDH2_k127_7788828_1 positive regulation of acetylcholine metabolic process K06910 - - 0.000000000000000000000000000000000000974 146.0
BYDH2_k127_7811942_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005231 429.0
BYDH2_k127_7811942_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 409.0
BYDH2_k127_7811942_2 FMN binding K03839 - - 0.0000000000000006298 84.0
BYDH2_k127_7811942_3 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00175 - 1.2.7.11,1.2.7.3 0.000000000001178 71.0
BYDH2_k127_7819214_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 484.0
BYDH2_k127_7819214_1 endonuclease activity - - - 0.000000002666 59.0
BYDH2_k127_7838285_0 cellulase activity K01727 - 4.2.2.1 0.0001563 56.0
BYDH2_k127_7898504_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.0000002908 63.0
BYDH2_k127_7938182_0 Diguanylate cyclase - - - 0.0000000000000004033 84.0
BYDH2_k127_7956050_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008423 369.0
BYDH2_k127_7956050_1 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000004161 192.0
BYDH2_k127_7956050_2 bis(5'-adenosyl)-triphosphatase activity K07052 - - 0.00000000000000000002507 94.0
BYDH2_k127_7956050_3 - - - - 0.000000000002034 71.0
BYDH2_k127_7956050_4 GIY-YIG catalytic domain K07461 - - 0.000000007407 57.0
BYDH2_k127_7979078_0 PFAM PKD domain containing protein - - - 0.000000000000000000000000000000000000000001461 181.0
BYDH2_k127_7979078_1 TIGRFAM histidinol phosphate phosphatase HisJ family K04486 - 3.1.3.15 0.000000000000000000006195 97.0
BYDH2_k127_7979078_2 PFAM Uncharacterised protein family (UPF0153) - - - 0.000000000000001345 84.0
BYDH2_k127_7979078_3 PFAM PKD domain - - - 0.000000004649 70.0
BYDH2_k127_7979078_4 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000983 63.0
BYDH2_k127_8001373_0 Tail sheath - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 411.0
BYDH2_k127_8019049_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 5.629e-286 896.0
BYDH2_k127_8019049_1 Alpha-2-macroglobulin family K06894 - - 1.003e-219 754.0
BYDH2_k127_8019049_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 GO:0008150,GO:0040007 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 537.0
BYDH2_k127_8019049_3 EamA-like transporter family - - - 0.0000000000000002721 81.0
BYDH2_k127_8019049_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000003988 61.0
BYDH2_k127_8019438_0 PFAM Radical SAM - - - 0.0000000000003056 81.0
BYDH2_k127_8073699_0 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004091 274.0
BYDH2_k127_8140238_0 Heavy metal transport detoxification protein K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 563.0
BYDH2_k127_8188694_0 Ankyrin repeat K06867 - - 0.0000000008048 67.0
BYDH2_k127_8197111_0 endonuclease containing a URI domain K07461 - - 0.00001786 52.0
BYDH2_k127_8205293_0 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000002344 101.0
BYDH2_k127_8205293_1 Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity K03763 - 2.7.7.7 0.0000000000000000001332 96.0
BYDH2_k127_8205293_2 chain release factor K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.000001406 57.0
BYDH2_k127_8215193_0 Belongs to the peptidase S11 family K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.0000000000000000000000000000000000005357 147.0
BYDH2_k127_8232682_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004191 348.0
BYDH2_k127_8232682_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000002188 57.0
BYDH2_k127_8247806_0 Bacterial extracellular solute-binding protein K02027 - - 0.000000000000000000001743 108.0
BYDH2_k127_8284267_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003654 291.0
BYDH2_k127_8319701_0 Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme K14656 - 2.7.7.2 0.000000000000000000104 94.0
BYDH2_k127_8319701_1 TPR repeat-containing protein - - - 0.00005192 53.0
BYDH2_k127_8325580_0 Belongs to the pseudouridine synthase RsuA family K06178,K06182 - 5.4.99.21,5.4.99.22 0.000000000000000000000000000000000000000000000000000000000001295 216.0
BYDH2_k127_8325580_1 PFAM VanW family protein K18346 - - 0.00000000000000001408 96.0
BYDH2_k127_8350106_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000001145 227.0
BYDH2_k127_8350106_1 nucleotidyltransferase activity - - - 0.00000000000000000000001608 112.0
BYDH2_k127_8350106_2 Belongs to the anti-sigma-factor antagonist family K06378 - - 0.0000000006684 64.0
BYDH2_k127_8362599_0 PFAM N-acetylmuramoyl-L-alanine amidase, family 2 - - - 0.00000000000000000000000000000000000000000001986 171.0
BYDH2_k127_8362599_1 NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000009817 143.0
BYDH2_k127_8362599_2 SWI complex, BAF60b domains - - - 0.00000000000000000000000007925 108.0
BYDH2_k127_8362599_3 Beta propeller domain - - - 0.0000000000000000000000002702 118.0
BYDH2_k127_8362599_4 GIY-YIG catalytic domain - - - 0.0000000000000000000007656 96.0
BYDH2_k127_8362599_5 - - - - 0.0003497 47.0
BYDH2_k127_8396224_0 PFAM Type II secretion system protein E K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 323.0
BYDH2_k127_8396224_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000002126 228.0
BYDH2_k127_8413480_0 DEAD DEAH box helicase K03654 - 3.6.4.12 0.00000000000000000000000000000000000005049 154.0
BYDH2_k127_8425348_0 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000008858 174.0
BYDH2_k127_8425348_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000001275 171.0
BYDH2_k127_8440778_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006,K01007 - 2.7.9.1,2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 497.0
BYDH2_k127_8483103_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003025 276.0
BYDH2_k127_848704_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006164 499.0
BYDH2_k127_848704_1 cluster protein-associated redox disulfide domain - - - 0.0000001354 54.0
BYDH2_k127_8495713_0 Thrombospondin 2 K04659,K16857 GO:0003674,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008201,GO:0012505,GO:0016525,GO:0022603,GO:0030141,GO:0031012,GO:0031091,GO:0031410,GO:0031982,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0044087,GO:0044089,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051241,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0062023,GO:0065007,GO:0065008,GO:0097367,GO:0097708,GO:0099503,GO:1901342,GO:1901343,GO:1901681,GO:2000026,GO:2000181 - 0.000001504 61.0
BYDH2_k127_8498491_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K06950 - - 0.00000000000000000000000000000000003881 137.0
BYDH2_k127_8498491_1 Transcriptional regulator, TrmB - - - 0.0000001968 55.0
BYDH2_k127_8498491_2 PFAM SNARE associated Golgi protein - - - 0.0002141 51.0
BYDH2_k127_8527305_0 NUDIX domain - - - 0.000000006635 61.0
BYDH2_k127_8527305_1 - - - - 0.0002859 50.0
BYDH2_k127_8575649_0 Probably functions as a manganese efflux pump - - - 0.00000000000000000000000000000000000000000002803 166.0
BYDH2_k127_8575649_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000003817 109.0
BYDH2_k127_8575649_2 - - - - 0.0000000000004532 74.0
BYDH2_k127_8608592_0 Homoserine dehydrogenase - - - 0.00000000000000000000000000000000000000005423 160.0
BYDH2_k127_8608592_1 Amino acid kinase family K00928,K12524 - 1.1.1.3,2.7.2.4 0.0003978 48.0
BYDH2_k127_8636767_0 AAA ATPase, central domain protein K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 462.0
BYDH2_k127_8671644_0 Exodeoxyribonuclease V, gamma subunit K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000149 266.0
BYDH2_k127_8671644_1 23S rRNA-intervening sequence protein - - - 0.000000000000000000000005223 105.0
BYDH2_k127_8671644_2 membrane - - - 0.00000000001016 66.0
BYDH2_k127_8702167_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 372.0
BYDH2_k127_8746173_0 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000701 109.0
BYDH2_k127_8746173_1 TIGRFAM RHS repeat-associated core - - - 0.0000000000000000000002486 108.0
BYDH2_k127_8776228_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000001008 259.0
BYDH2_k127_8776228_1 Participates in initiation and elongation during chromosome replication K02314 GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 0.0000000000000006976 79.0
BYDH2_k127_8907189_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 327.0
BYDH2_k127_8907189_1 - - - - 0.0001416 44.0
BYDH2_k127_8936889_0 AICAR transformylase IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006006 268.0
BYDH2_k127_8936889_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000004182 248.0
BYDH2_k127_8945719_0 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000001119 84.0
BYDH2_k127_8945719_1 NUDIX domain - - - 0.00000000000006527 74.0
BYDH2_k127_8969154_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000003889 211.0
BYDH2_k127_8969154_1 RNA-binding protein - - - 0.00000000000000000000000006113 109.0
BYDH2_k127_8969154_2 virulence factor MVIN family protein - - - 0.000002273 59.0
BYDH2_k127_8983400_0 Psort location Cytoplasmic, score 9.97 - - - 0.0000000000000000000000000000000000000000204 162.0
BYDH2_k127_8983400_1 Psort location Cytoplasmic, score 9.97 K00845 - 2.7.1.2 0.00000000000000000000000000004715 127.0
BYDH2_k127_8983400_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000655 53.0
BYDH2_k127_8986886_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 541.0
BYDH2_k127_8986886_1 Transglycosylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008369 327.0
BYDH2_k127_9065834_0 ADP-glyceromanno-heptose 6-epimerase activity K19997 - 5.1.3.26 0.0007647 44.0
BYDH2_k127_907190_0 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000001016 147.0
BYDH2_k127_907190_1 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000001065 127.0
BYDH2_k127_907190_2 YGGT family K02221 - - 0.0000000000007203 71.0
BYDH2_k127_907190_3 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000232 53.0
BYDH2_k127_907190_4 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000009622 53.0
BYDH2_k127_908754_0 SPFH domain-Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009281 254.0
BYDH2_k127_908754_1 Folate-biopterin transporter 1 - GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0008517,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015075,GO:0015231,GO:0015238,GO:0015318,GO:0015350,GO:0015711,GO:0015849,GO:0015884,GO:0015885,GO:0015893,GO:0022857,GO:0031967,GO:0031975,GO:0034220,GO:0035461,GO:0042221,GO:0042493,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051234,GO:0051958,GO:0055085,GO:0071702,GO:0071705,GO:0072337,GO:0072349,GO:0090482,GO:0098656,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000001069 177.0
BYDH2_k127_908754_2 UPF0489 domain - - - 0.0000000000000000000003163 100.0
BYDH2_k127_908754_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000005057 76.0
BYDH2_k127_908754_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000001763 64.0
BYDH2_k127_9181833_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004197 504.0
BYDH2_k127_9181833_1 domain, Protein - - - 0.0000471 53.0
BYDH2_k127_9208112_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 316.0
BYDH2_k127_924493_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000002662 147.0
BYDH2_k127_924493_1 competence protein - - - 0.00000000000000000000001864 109.0
BYDH2_k127_924493_2 Preprotein translocase SecG subunit K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00001745 50.0
BYDH2_k127_925972_0 Baseplate J-like protein - - - 0.0000002811 63.0
BYDH2_k127_9288368_0 Belongs to the UPF0312 family - - - 0.000000002956 70.0
BYDH2_k127_9289709_0 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005539 279.0
BYDH2_k127_9289709_1 TIGRFAM methyltransferase FkbM - - - 0.0000000000000000000000000000003531 131.0
BYDH2_k127_9315085_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000001197 229.0
BYDH2_k127_9315085_1 peptidase - - - 0.00000000000000000000000000000000000001586 151.0
BYDH2_k127_9373437_0 Carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 - 6.3.5.5 0.0 1186.0
BYDH2_k127_9373437_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 1.796e-210 669.0
BYDH2_k127_9373437_2 Telomere recombination K07566 - 2.7.7.87 0.0000000000000000000000000744 115.0
BYDH2_k127_9396905_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835,K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 386.0
BYDH2_k127_941034_0 PFAM Type II secretion system protein E K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002648 257.0
BYDH2_k127_941034_1 membrane K08972 - - 0.000000000009821 70.0
BYDH2_k127_941034_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0003415 46.0
BYDH2_k127_9430259_0 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009372 284.0
BYDH2_k127_9430259_1 PFAM blue (type 1) copper domain protein - - - 0.000000000000001085 90.0
BYDH2_k127_9438314_0 Peptidase, M23 K21471 - - 0.0000000000000004031 93.0
BYDH2_k127_9438314_1 N-acetylmuramoyl-L-alanine amidase K01448 GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 3.5.1.28 0.0000000000000005325 92.0
BYDH2_k127_9463547_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000004314 105.0
BYDH2_k127_9463547_1 Belongs to the anti-sigma-factor antagonist family K06378 - - 0.0000004229 57.0
BYDH2_k127_9512609_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001487 253.0
BYDH2_k127_9591653_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 606.0
BYDH2_k127_9695679_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 362.0
BYDH2_k127_9695679_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005727 339.0
BYDH2_k127_9695679_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000008106 211.0
BYDH2_k127_9695679_3 ATPases associated with a variety of cellular activities K09812 - - 0.000000000000000000000000000000000000000000000000000001176 198.0
BYDH2_k127_9695679_4 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000008505 135.0
BYDH2_k127_9695679_5 Hydrolase - - - 0.000001669 58.0
BYDH2_k127_9695679_6 Protease prsW family - - - 0.0001283 53.0
BYDH2_k127_9704337_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 339.0
BYDH2_k127_9704337_1 Binds the 23S rRNA K02909 - - 0.00000000000000000003935 95.0
BYDH2_k127_9711919_0 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 588.0
BYDH2_k127_9711919_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 556.0
BYDH2_k127_9800295_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004456 411.0
BYDH2_k127_9800295_1 23S rRNA-intervening sequence protein - - - 0.000000000000005108 79.0
BYDH2_k127_9823185_0 ABC transporter substrate-binding component GldG K01992 - - 0.00000000000000000000000000000000000000000001136 181.0
BYDH2_k127_9823185_1 - K01992 - - 0.00000000000000000000000000000000000000005728 156.0
BYDH2_k127_9834849_0 Phosphomannomutase phosphoglucomutase K15778 GO:0003674,GO:0003824,GO:0004615,GO:0005975,GO:0008150,GO:0008152,GO:0016853,GO:0016866,GO:0016868,GO:0044238,GO:0071704 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009579 371.0
BYDH2_k127_9834849_1 PFAM VanW like protein - - - 0.00000000000000000000000000000000000000002565 168.0
BYDH2_k127_9834849_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000003817 69.0
BYDH2_k127_9834849_3 YtxH-like protein - - - 0.00003106 49.0
BYDH2_k127_9834849_4 PFAM Ion - - - 0.00004667 52.0
BYDH2_k127_9839090_0 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000003158 219.0
BYDH2_k127_9839090_1 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000004204 201.0
BYDH2_k127_9839090_2 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000371 153.0
BYDH2_k127_9839090_3 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000004442 128.0
BYDH2_k127_9839090_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000005532 125.0
BYDH2_k127_9839090_5 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000001038 78.0
BYDH2_k127_9856380_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 404.0
BYDH2_k127_9856380_1 aspartate kinase activity - - - 0.000000000000000000000000000000000000001806 160.0
BYDH2_k127_9856380_2 S23 ribosomal protein - - - 0.000000000000000000000000236 107.0
BYDH2_k127_9856380_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000001361 96.0
BYDH2_k127_9856380_4 Binds directly to 16S ribosomal RNA K02968 - - 0.0000005607 57.0
BYDH2_k127_9889148_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000002727 166.0
BYDH2_k127_9889148_1 Thioredoxin - - - 0.0000000000000000000000000000007814 129.0
BYDH2_k127_9889148_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000764 93.0
BYDH2_k127_9920089_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000000000000000000000000000003549 122.0