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Overview

ID MAG00179
Name BYDH3_bin.10
Sample SMP0006
Taxonomy
Kingdom Bacteria
Phylum Desulfobacterota
Class Desulfomonilia
Order UBA1062
Family UBA1062
Genus MWEI01
Species
Assembly information
Completeness (%) 82.61
Contamination (%) 4.37
GC content (%) 53.0
N50 (bp) 3,961
Genome size (bp) 2,750,420

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2850

Gene name Description KEGG GOs EC E-value Score Sequence
BYDH3_k127_1001140_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 550.0
BYDH3_k127_1001140_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 400.0
BYDH3_k127_1001140_2 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000003701 256.0
BYDH3_k127_1001140_3 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000003801 228.0
BYDH3_k127_1001140_4 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000000004791 161.0
BYDH3_k127_1001140_5 4Fe-4S binding domain K00171 - 1.2.7.1 0.0000000000000000000000000000000000000009414 149.0
BYDH3_k127_1001140_6 Threonine dehydratase K01754 - 4.3.1.19 0.000000001665 59.0
BYDH3_k127_10026551_0 Penicillin-binding Protein - - - 0.0000000000000000000000000000000000000000000000000000001954 209.0
BYDH3_k127_10026551_1 COG3328 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000001552 137.0
BYDH3_k127_10026551_2 hydrolase K01048 - 3.1.1.5 0.00003934 46.0
BYDH3_k127_10029095_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000002109 238.0
BYDH3_k127_10029095_1 Transcriptional regulator, GntR family K05799 - - 0.000000000000000000000000000000000000001543 156.0
BYDH3_k127_10034880_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000457 534.0
BYDH3_k127_10034880_1 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 314.0
BYDH3_k127_10034880_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000002997 271.0
BYDH3_k127_10034880_3 D,d-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000005688 183.0
BYDH3_k127_10034880_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000001012 172.0
BYDH3_k127_10034880_5 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000264 85.0
BYDH3_k127_10065782_0 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002825 293.0
BYDH3_k127_10065782_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000475 270.0
BYDH3_k127_10065782_2 PFAM CheW-like protein K03408 - - 0.000000000000000000000000000000000000000000001307 169.0
BYDH3_k127_10065782_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000001237 80.0
BYDH3_k127_10085591_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 590.0
BYDH3_k127_10085591_1 Thiamine biosynthesis protein (ThiI) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003124 253.0
BYDH3_k127_10085591_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000008776 248.0
BYDH3_k127_10085591_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000001968 113.0
BYDH3_k127_10085591_4 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.000000000002695 69.0
BYDH3_k127_10091846_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000111 183.0
BYDH3_k127_10091846_1 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000006797 163.0
BYDH3_k127_10091846_2 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.000000000000000000000000000003428 124.0
BYDH3_k127_10098513_0 PFAM aminoacyl-tRNA synthetase class Ib K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000004106 180.0
BYDH3_k127_10098513_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP - - - 0.0000000000000000000000000000000000000000002568 173.0
BYDH3_k127_10098513_2 Segregation and condensation protein ScpA K05896 - - 0.000000000000000000000000000000004024 137.0
BYDH3_k127_10098513_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000666 125.0
BYDH3_k127_10137953_0 COG0183 Acetyl-CoA acetyltransferase K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000001287 247.0
BYDH3_k127_10137953_1 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000369 188.0
BYDH3_k127_10151073_0 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 361.0
BYDH3_k127_10151073_1 Pyridoxamine 5'-phosphate oxidase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 323.0
BYDH3_k127_10162108_0 Carbohydrate kinase K00854,K00862 - 2.7.1.17,2.7.1.215 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 490.0
BYDH3_k127_10162108_1 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000001259 207.0
BYDH3_k127_10162108_2 Psort location Cytoplasmic, score - - - 0.000000000000000000000000001474 125.0
BYDH3_k127_10162108_3 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000000000002482 108.0
BYDH3_k127_10164688_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 610.0
BYDH3_k127_10164688_1 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 295.0
BYDH3_k127_10164688_2 maF-like protein K06287 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0036218,GO:0036221,GO:0042802,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0047429 - 0.00000000000000000000000000000000000000000006414 165.0
BYDH3_k127_10164688_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00172,K00441,K03522 - 1.12.98.1,1.2.7.1 0.000000000000000000000000000000000000001245 151.0
BYDH3_k127_10173526_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 1.003e-216 698.0
BYDH3_k127_10173526_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000004717 265.0
BYDH3_k127_10212687_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000444 390.0
BYDH3_k127_10212687_1 NAD dependent epimerase dehydratase family protein K01784 - 5.1.3.2 0.000000000000000000009395 98.0
BYDH3_k127_10213192_0 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 323.0
BYDH3_k127_10213192_1 PFAM Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 317.0
BYDH3_k127_10213192_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000003023 219.0
BYDH3_k127_10213192_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000001078 161.0
BYDH3_k127_10213192_4 negative regulation of phosphate transmembrane transport K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0060255,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000003291 119.0
BYDH3_k127_1024902_0 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 424.0
BYDH3_k127_1024902_1 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 302.0
BYDH3_k127_1024902_2 - - - - 0.00000000000000000000000000000000000000000001684 180.0
BYDH3_k127_1024902_3 - - - - 0.00000000000000000002016 98.0
BYDH3_k127_10259752_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 325.0
BYDH3_k127_10259752_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009276 305.0
BYDH3_k127_10259752_2 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000001262 109.0
BYDH3_k127_10259752_3 integral membrane protein TerC - - - 0.000000000000000000000004576 103.0
BYDH3_k127_10259752_4 cheY-homologous receiver domain K03413 - - 0.0000000000000000001858 91.0
BYDH3_k127_10309384_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 598.0
BYDH3_k127_10309384_1 Thioesterase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 291.0
BYDH3_k127_10309384_2 NlpC/P60 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003669 278.0
BYDH3_k127_10323229_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004077 481.0
BYDH3_k127_10323229_1 B12 binding domain K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000001502 230.0
BYDH3_k127_10323229_2 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000001426 187.0
BYDH3_k127_10323229_3 metal-binding protein - - - 0.0000006716 54.0
BYDH3_k127_10332905_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 500.0
BYDH3_k127_10332905_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001786 267.0
BYDH3_k127_10350434_0 Bacterial transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 466.0
BYDH3_k127_10371465_0 Major Facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000009196 153.0
BYDH3_k127_10371465_1 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.000002578 49.0
BYDH3_k127_1040952_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 364.0
BYDH3_k127_1040952_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000574 352.0
BYDH3_k127_1040952_2 PFAM EAL domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000007656 238.0
BYDH3_k127_10414312_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 327.0
BYDH3_k127_10414312_1 PFAM Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000001147 113.0
BYDH3_k127_10414312_2 Transcriptional regulator - - - 0.000000000000001703 84.0
BYDH3_k127_10433906_0 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003361 263.0
BYDH3_k127_10433906_1 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.00000000000000000000003601 105.0
BYDH3_k127_10433906_2 PFAM Formylmethanofuran dehydrogenase, subunit E region K11261 - 1.2.7.12 0.000158 45.0
BYDH3_k127_10433906_3 PFAM metallophosphoesterase K07096 - - 0.0003404 53.0
BYDH3_k127_1043561_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.957e-217 689.0
BYDH3_k127_1043561_1 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005954 256.0
BYDH3_k127_1043561_2 - - - - 0.000000000009485 69.0
BYDH3_k127_10436314_0 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 349.0
BYDH3_k127_10436314_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000003895 141.0
BYDH3_k127_10436314_2 dEAD DEAH box helicase K06877 - - 0.00000000000000000000000001678 109.0
BYDH3_k127_10450781_0 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004356 624.0
BYDH3_k127_10450781_1 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 351.0
BYDH3_k127_10450781_2 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000002978 233.0
BYDH3_k127_10459065_0 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000602 152.0
BYDH3_k127_10459065_1 - - - - 0.00000000000000000000000000255 120.0
BYDH3_k127_10460597_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 418.0
BYDH3_k127_10460597_1 - - - - 0.000000000000000000000000000000000000000009086 167.0
BYDH3_k127_10461422_0 lipolytic protein G-D-S-L family - - - 0.0000000000000000001237 97.0
BYDH3_k127_10461422_1 Protein of unknown function (DUF1573) - - - 0.000000000005559 68.0
BYDH3_k127_10472228_0 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000002336 199.0
BYDH3_k127_10472228_1 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000000001562 128.0
BYDH3_k127_10472228_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000003611 126.0
BYDH3_k127_10472228_3 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 - 1.2.7.3 0.0000000000000000001782 89.0
BYDH3_k127_10472228_4 Hsp20/alpha crystallin family K13993 - - 0.0000000000000006406 80.0
BYDH3_k127_10474826_0 PFAM acyl-CoA dehydrogenase domain protein - - - 1.729e-223 702.0
BYDH3_k127_10475017_0 PFAM Sporulation stage II, protein E C-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008983 293.0
BYDH3_k127_10475017_1 Iron only hydrogenase large subunit, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000003637 209.0
BYDH3_k127_10475017_2 Putative Fe-S cluster K02482 - 2.7.13.3 0.00000000000008283 72.0
BYDH3_k127_10480825_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 334.0
BYDH3_k127_10480825_1 AI-2E family transporter K11744 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0009372,GO:0009987,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0044764,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002493 282.0
BYDH3_k127_10480825_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000005897 167.0
BYDH3_k127_10480825_3 BioY family K03523 - - 0.0000000000000000000000000000000000000000003982 163.0
BYDH3_k127_10480825_4 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000001019 165.0
BYDH3_k127_10484059_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 361.0
BYDH3_k127_10484059_1 FliW protein K13626 - - 0.000000000000000000000000000000000008379 141.0
BYDH3_k127_10484059_2 Belongs to the bacterial flagellin family K02397 - - 0.0000000000000000000000000000526 129.0
BYDH3_k127_10484059_3 molybdopterin-guanine dinucleotide biosynthesis protein K03753,K13818 - 2.7.7.77 0.0000000000000000000000001856 113.0
BYDH3_k127_10484059_4 PKD domain K07282 - - 0.0000000000000003454 91.0
BYDH3_k127_10488952_0 VWA containing CoxE family protein K09989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 527.0
BYDH3_k127_10488952_1 AAA domain (Cdc48 subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006182 414.0
BYDH3_k127_10488952_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 334.0
BYDH3_k127_10488952_3 AAA domain K00851,K07028 GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0009987,GO:0030312,GO:0044464,GO:0044764,GO:0046812,GO:0051704,GO:0071944 2.7.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 306.0
BYDH3_k127_10488952_4 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.00000000000000000000000000000000001038 147.0
BYDH3_k127_10488952_5 - - - - 0.0000000000000000000002405 99.0
BYDH3_k127_10488952_6 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000003194 96.0
BYDH3_k127_10488952_7 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.0000000000000000004349 89.0
BYDH3_k127_10488952_8 glycosyl transferase family 2 K20444 - - 0.0000000001304 71.0
BYDH3_k127_10488952_9 AAA domain K07028 - - 0.0000009386 59.0
BYDH3_k127_10513327_0 Mediates zinc uptake. May also transport other divalent cations K07238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000219 260.0
BYDH3_k127_10513327_1 PFAM EamA-like transporter family - - - 0.00000000000000000000000000000000000004963 147.0
BYDH3_k127_10514208_0 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 316.0
BYDH3_k127_10514208_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003883 245.0
BYDH3_k127_10514208_2 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.0000000000000000000000000000000000000000000259 167.0
BYDH3_k127_1051607_0 Histidine kinase K07641,K07642,K07711 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008256 374.0
BYDH3_k127_1051607_1 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003202 282.0
BYDH3_k127_1051607_2 - - - - 0.0008835 45.0
BYDH3_k127_10532604_0 PFAM NADH flavin oxidoreductase NADH oxidase K10680 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009744 241.0
BYDH3_k127_10532604_1 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000001066 178.0
BYDH3_k127_10532604_2 Acyl-CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000004523 153.0
BYDH3_k127_10532604_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000001449 102.0
BYDH3_k127_10577507_0 Pyridine nucleotide-disulphide oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1538.0
BYDH3_k127_10577507_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001928 234.0
BYDH3_k127_10577507_2 PFAM methyl-viologen-reducing hydrogenase delta subunit K14127 - 1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000005378 160.0
BYDH3_k127_10577507_3 4fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000004165 134.0
BYDH3_k127_10578751_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008648 476.0
BYDH3_k127_10578751_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 328.0
BYDH3_k127_10578751_2 Universal stress protein - - - 0.0000000000000002588 81.0
BYDH3_k127_10587565_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000008846 167.0
BYDH3_k127_10587565_1 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000001365 144.0
BYDH3_k127_10607546_0 acetyl-coa acetyltransferase K00626 - 2.3.1.9 2.551e-203 638.0
BYDH3_k127_10607546_1 Transcriptional regulator, TetR family - - - 0.0000000000000000000009911 102.0
BYDH3_k127_10639130_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007926 507.0
BYDH3_k127_10639130_1 PFAM GGDEF domain containing protein K21019 - 2.7.7.65 0.000000000000000000000000000000000006918 158.0
BYDH3_k127_10639130_2 ABC transporter K02028 - 3.6.3.21 0.0000000000000000000000000001183 115.0
BYDH3_k127_10639130_3 PFAM TfoX N-terminal domain K07343 - - 0.0000000001699 62.0
BYDH3_k127_10639130_4 viral genome integration into host DNA - - - 0.00000001187 58.0
BYDH3_k127_10683697_0 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005697 590.0
BYDH3_k127_10683697_1 - - - - 0.0000000779 62.0
BYDH3_k127_10687683_0 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006113 250.0
BYDH3_k127_10687683_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000009074 234.0
BYDH3_k127_10687683_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000679 138.0
BYDH3_k127_10687683_3 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000002174 136.0
BYDH3_k127_10696999_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 1.653e-296 919.0
BYDH3_k127_10696999_1 helicase K10843 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005611 608.0
BYDH3_k127_10696999_2 Matrixin - - - 0.0000000000000000000000000009488 124.0
BYDH3_k127_10696999_3 OmpA-like transmembrane domain - - - 0.0000000005223 67.0
BYDH3_k127_10703508_0 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 3.92e-198 627.0
BYDH3_k127_10703508_1 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001923 283.0
BYDH3_k127_10703508_2 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000002731 161.0
BYDH3_k127_10703508_3 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000003805 124.0
BYDH3_k127_10703508_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000005158 88.0
BYDH3_k127_10707155_0 4Fe-4S double cluster binding domain K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007517 526.0
BYDH3_k127_10707155_1 PDZ domain (Also known as DHR or GLGF) K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004016 509.0
BYDH3_k127_10707155_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 328.0
BYDH3_k127_10707155_3 RNA pseudouridylate synthase K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000821 216.0
BYDH3_k127_10707155_4 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.0000000000000000000000000000000000000000001591 162.0
BYDH3_k127_10707155_5 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000008904 72.0
BYDH3_k127_10707155_6 SEC-C Motif Domain Protein - - - 0.0000002164 56.0
BYDH3_k127_10707155_7 Sugar (and other) transporter - - - 0.00006513 47.0
BYDH3_k127_10750744_0 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000003389 220.0
BYDH3_k127_10750744_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000008397 189.0
BYDH3_k127_10750744_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000162 143.0
BYDH3_k127_10750744_3 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000007561 89.0
BYDH3_k127_10750744_4 Ribosomal L32p protein family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.000000000000000002091 85.0
BYDH3_k127_10750744_5 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000001736 89.0
BYDH3_k127_10780794_0 heat shock protein DnaJ domain protein K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000001113 244.0
BYDH3_k127_10780794_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000006484 232.0
BYDH3_k127_10780794_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000000298 196.0
BYDH3_k127_10780794_3 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000004298 184.0
BYDH3_k127_10785562_0 peptidase M42 family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007028 446.0
BYDH3_k127_10785562_1 Universal stress protein family - - - 0.000000000000000001456 91.0
BYDH3_k127_10796179_0 extracellular solute-binding protein, family 5 K02035,K13893 - - 2.897e-201 641.0
BYDH3_k127_10796179_1 PFAM UvrD REP helicase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004419 564.0
BYDH3_k127_10796179_2 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006132 422.0
BYDH3_k127_10796179_3 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 402.0
BYDH3_k127_10796179_4 Acyl-coenzyme A 6-aminopenicillanic acid acyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 358.0
BYDH3_k127_10796179_5 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000005542 257.0
BYDH3_k127_10796179_6 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000004779 210.0
BYDH3_k127_10796179_7 saccharopine dehydrogenase activity - - - 0.0005538 45.0
BYDH3_k127_10806406_0 L,D-transpeptidase catalytic domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 414.0
BYDH3_k127_10806406_1 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000008462 238.0
BYDH3_k127_10806406_2 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000696 147.0
BYDH3_k127_10806406_3 Belongs to the thiolase family K00632 - 2.3.1.16 0.0000000000000000000000000005392 113.0
BYDH3_k127_10806406_4 Putative thioesterase (yiiD_Cterm) - - - 0.0000000000000000000000002627 111.0
BYDH3_k127_10828904_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000155 260.0
BYDH3_k127_10828904_1 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000002437 133.0
BYDH3_k127_10889451_0 leucyl-tRNA aminoacylation K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 505.0
BYDH3_k127_10889451_1 DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.000001142 56.0
BYDH3_k127_10936463_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 2.683e-241 760.0
BYDH3_k127_10936463_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000004305 164.0
BYDH3_k127_10936463_2 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000001096 118.0
BYDH3_k127_10969624_0 Molecular chaperone. Has ATPase activity K04079 - - 1.984e-196 622.0
BYDH3_k127_10969624_1 - - - - 0.0002967 48.0
BYDH3_k127_10976165_0 HI0933-like protein K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 440.0
BYDH3_k127_10976165_1 Domain of unknown function (DUF3488) - - - 0.0000000000000000000001298 108.0
BYDH3_k127_10976165_2 PFAM permease YjgP YjgQ family protein K07091 - - 0.000000000000000003218 96.0
BYDH3_k127_10976165_3 PFAM OmpA MotB domain protein K02557 - - 0.00000000000001501 83.0
BYDH3_k127_10976165_4 Permease, YjgP YjgQ - - - 0.0000001048 61.0
BYDH3_k127_10976165_5 Predicted permease YjgP/YjgQ family K11720 - - 0.00002192 52.0
BYDH3_k127_11007915_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000557 584.0
BYDH3_k127_11007915_1 transferase activity, transferring glycosyl groups K00712 - 2.4.1.52 0.0000000000000000000000000000000000000000000007474 171.0
BYDH3_k127_11009582_0 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 329.0
BYDH3_k127_11009582_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300,K08301 - 3.1.26.12 0.0000000000000000000000000000000000000000000000000000000000000001422 228.0
BYDH3_k127_11009582_2 WD40 repeat, subgroup - - - 0.0000000000000000000002995 113.0
BYDH3_k127_11019879_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 472.0
BYDH3_k127_11019879_1 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000009094 263.0
BYDH3_k127_11019879_2 Peptidase S24-like K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000008407 242.0
BYDH3_k127_11019879_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000006096 231.0
BYDH3_k127_11019879_4 PFAM peptidase M16 domain protein - - - 0.00000000000000000000000000000000000004293 148.0
BYDH3_k127_11022104_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002989 280.0
BYDH3_k127_11022104_1 ABC transporter K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000002286 239.0
BYDH3_k127_11034196_0 PFAM aminotransferase class V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003412 548.0
BYDH3_k127_11034196_1 PFAM transferase hexapeptide repeat containing protein K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007667 387.0
BYDH3_k127_11034196_2 BFD domain protein 2Fe-2S -binding domain protein K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 307.0
BYDH3_k127_11034196_3 TraB family K09973 - - 0.0000000000000000000000000000001471 131.0
BYDH3_k127_11047941_0 - - - - 0.0000000000000000000000003919 120.0
BYDH3_k127_11047941_1 - - - - 0.000000000000000003047 87.0
BYDH3_k127_11047941_2 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0003054 47.0
BYDH3_k127_11098274_0 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 292.0
BYDH3_k127_11098274_1 Domain of unknown function - - - 0.00000000000000000000000000000000000000000000000000000000000000000002571 239.0
BYDH3_k127_11098274_2 Dinitrogenase iron-molybdenum cofactor - - - 0.00000000000000000000000000174 113.0
BYDH3_k127_11098274_4 PFAM Dinitrogenase iron-molybdenum cofactor biosynthesis - - - 0.000000006939 58.0
BYDH3_k127_11103342_0 Belongs to the DEAD box helicase family K03732 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000004473 265.0
BYDH3_k127_11103342_1 tRNA processing K04075,K14058 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 6.3.4.19 0.0000000000000000000000000000000000000000000000000000000000000000000000002232 254.0
BYDH3_k127_11103342_2 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000000000000000000000000000004188 218.0
BYDH3_k127_11127766_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 608.0
BYDH3_k127_11127766_1 negative regulation of phosphate transmembrane transport K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0060255,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000001632 83.0
BYDH3_k127_11136008_0 Bacterial type II and III secretion system protein K12282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 346.0
BYDH3_k127_11136008_1 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.000000000000000000000000003513 117.0
BYDH3_k127_11143417_0 4Fe-4S double cluster binding domain K00265 - 1.4.1.13,1.4.1.14 2.036e-302 934.0
BYDH3_k127_11143417_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K02584 - - 6.518e-226 709.0
BYDH3_k127_11143417_2 GXGXG motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 518.0
BYDH3_k127_11143417_3 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004743 474.0
BYDH3_k127_11152503_0 Coenzyme A transferase K01026 - 2.8.3.1 6.836e-285 891.0
BYDH3_k127_11152503_1 Domain of unknown function (DUF3473) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 308.0
BYDH3_k127_11152503_2 AMP-binding enzyme K01897 - 6.2.1.3 0.00000113 52.0
BYDH3_k127_11157755_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006064 560.0
BYDH3_k127_11157755_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 475.0
BYDH3_k127_11157755_2 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 459.0
BYDH3_k127_11157755_3 Peptidase family M20/M25/M40 K01270 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052 329.0
BYDH3_k127_11157755_4 TIGRFAM regulatory protein, FmdB - - - 0.0000000008166 61.0
BYDH3_k127_11160372_0 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 283.0
BYDH3_k127_11160372_1 Located on the platform of the 30S subunit K02948 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001511 239.0
BYDH3_k127_11160372_2 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000000000000005847 233.0
BYDH3_k127_11204837_0 ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 389.0
BYDH3_k127_11204837_1 ABC transporter substrate-binding protein PnrA-like K02058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007698 258.0
BYDH3_k127_11204837_2 PFAM Basic membrane K02058 - - 0.000000000000000000000000000000000000000000000000001156 184.0
BYDH3_k127_11214634_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 411.0
BYDH3_k127_11214634_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 395.0
BYDH3_k127_11214634_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000001076 120.0
BYDH3_k127_11214634_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000001401 76.0
BYDH3_k127_11216482_0 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000002119 212.0
BYDH3_k127_11216482_1 - - - - 0.0000000000000000000000000000000000000000000000000000000001981 207.0
BYDH3_k127_11216482_2 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000616 199.0
BYDH3_k127_11216482_3 4Fe-4S binding domain - - - 0.00000098 55.0
BYDH3_k127_11233618_0 TIGRFAM arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 384.0
BYDH3_k127_11233618_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791,K13019 - 5.1.3.14,5.1.3.23 0.000000000000000000000000000000000000000000000002421 176.0
BYDH3_k127_11254835_0 SCP-2 sterol transfer family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006952 402.0
BYDH3_k127_11254835_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 346.0
BYDH3_k127_11254835_2 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002065 286.0
BYDH3_k127_11254835_3 nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002119 265.0
BYDH3_k127_11254835_4 Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000004284 207.0
BYDH3_k127_11254835_5 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000005601 195.0
BYDH3_k127_11254835_6 aminoacyl-tRNA metabolism involved in translational fidelity K19055 - - 0.0000000000000000000007301 96.0
BYDH3_k127_11254835_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000003373 51.0
BYDH3_k127_11259803_0 Belongs to the RtcB family K14415 - 6.5.1.3 7.226e-204 641.0
BYDH3_k127_11259803_1 Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently - GO:0000394,GO:0003674,GO:0005488,GO:0005509,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000004608 147.0
BYDH3_k127_11259958_0 alpha/beta hydrolase fold K07019 - - 0.0000000000000000000000000000000000000000000000000000001045 199.0
BYDH3_k127_11259958_1 hydrolase of the alpha beta-hydrolase fold K07019 - - 0.00000000000000000000000000000000000000003049 156.0
BYDH3_k127_11259958_2 thiamine pyrophosphokinase K00949 - 2.7.6.2 0.00000000000000000000000000000000000000008565 158.0
BYDH3_k127_11259958_3 diguanylate cyclase - - - 0.0000000000000000000000000000000000002409 151.0
BYDH3_k127_11259958_4 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000002217 134.0
BYDH3_k127_11259958_5 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.0000000000000000000000000000001343 133.0
BYDH3_k127_11272716_0 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 379.0
BYDH3_k127_11272716_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 364.0
BYDH3_k127_11272716_10 - - - - 0.000000000001296 74.0
BYDH3_k127_11272716_2 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000003848 216.0
BYDH3_k127_11272716_3 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000006941 202.0
BYDH3_k127_11272716_4 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000002636 156.0
BYDH3_k127_11272716_5 Queuosine biosynthesis protein QueC K00566 - 2.8.1.13 0.000000000000000000000000000000002417 135.0
BYDH3_k127_11272716_6 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000000009838 131.0
BYDH3_k127_11272716_7 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000002159 126.0
BYDH3_k127_11272716_8 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000164 116.0
BYDH3_k127_11272716_9 cheY-homologous receiver domain - - - 0.000000000000001327 79.0
BYDH3_k127_11293393_0 COGs COG0767 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007848 364.0
BYDH3_k127_11293393_1 PFAM ABC transporter related K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 343.0
BYDH3_k127_11293393_2 MlaD protein K06192 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004655 261.0
BYDH3_k127_11293393_3 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000000000000000009404 235.0
BYDH3_k127_11293393_4 - K09143 - - 0.00000000000000000000000000000000000000000000000000001535 193.0
BYDH3_k127_11293393_5 PFAM PfkB K00856 - 2.7.1.20 0.0000000000000000000000000000000000000265 145.0
BYDH3_k127_11293393_6 ABC-type transport auxiliary lipoprotein component K09857 - - 0.000000000000000000000000000000175 135.0
BYDH3_k127_11293393_8 B12 binding domain - - - 0.00000000000001192 74.0
BYDH3_k127_11298910_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 530.0
BYDH3_k127_11298910_1 TGS domain K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006766 245.0
BYDH3_k127_11301740_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003956 511.0
BYDH3_k127_11301740_1 PFAM Radical SAM K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000003925 161.0
BYDH3_k127_11301740_2 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.000000000000000000606 90.0
BYDH3_k127_11322121_0 PFAM NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 6.797e-241 749.0
BYDH3_k127_11322121_1 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 413.0
BYDH3_k127_11322121_2 acyl-coa dehydrogenase K08297 GO:0003674,GO:0003824,GO:0006066,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0016627,GO:0034308,GO:0034309,GO:0044281,GO:0044283,GO:0046165,GO:0052890,GO:0055114,GO:0071270,GO:0071271,GO:0071704,GO:1901576,GO:1901615,GO:1901617 1.3.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000005265 239.0
BYDH3_k127_11322121_3 PFAM amidohydrolase 2 K07045 - - 0.0000000000000000000000009633 104.0
BYDH3_k127_11341620_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000003687 224.0
BYDH3_k127_11341620_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000004337 157.0
BYDH3_k127_11341620_2 Universal stress protein family - - - 0.0000000000000000000000000000000000002045 145.0
BYDH3_k127_11343236_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 1.579e-195 616.0
BYDH3_k127_11343236_1 PFAM short chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000019 230.0
BYDH3_k127_11343236_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000004517 231.0
BYDH3_k127_11343236_3 PFAM short chain dehydrogenase - - - 0.000000000000193 72.0
BYDH3_k127_11343236_4 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00001091 48.0
BYDH3_k127_11350937_0 DegT/DnrJ/EryC1/StrS aminotransferase family K00812,K22457 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769,GO:0047297 2.6.1.1,2.6.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004083 273.0
BYDH3_k127_11350937_1 TIGRFAM flagellar biosynthetic protein FliS K02422 - - 0.0000000000000000000000000001029 119.0
BYDH3_k127_1135587_0 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000001508 100.0
BYDH3_k127_1136719_0 Protein of unknown function (DUF1246) K06863 - 6.3.4.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 526.0
BYDH3_k127_1136719_1 PFAM glutamate synthase alpha subunit domain protein K00202 - 1.2.7.12 0.00000000000000000000000000000000000000000000000000000000000000006733 230.0
BYDH3_k127_1136719_2 Protein of unknown function (DUF1246) K06863 - 6.3.4.23 0.0000007625 51.0
BYDH3_k127_11370065_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 3.136e-235 733.0
BYDH3_k127_11370065_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003658 271.0
BYDH3_k127_11370065_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000003002 171.0
BYDH3_k127_11370065_3 KH domain K03595 - - 0.0000000000000000000000000000000000004912 144.0
BYDH3_k127_11370065_4 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000001596 123.0
BYDH3_k127_11370065_5 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000005051 93.0
BYDH3_k127_11370065_6 - - - - 0.0000000000002225 74.0
BYDH3_k127_11374366_0 type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009815 453.0
BYDH3_k127_11374366_1 PFAM Peptidoglycan-binding domain 1 protein K02450 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 312.0
BYDH3_k127_11374366_2 type II secretion system protein E K02454 - - 0.000000000000000000003023 101.0
BYDH3_k127_11374366_3 Domain present in PSD-95, Dlg, and ZO-1/2. K02452 - - 0.000000000002433 77.0
BYDH3_k127_11374366_4 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0000000005776 61.0
BYDH3_k127_11374366_5 TPR repeat - - - 0.000004229 57.0
BYDH3_k127_1140708_0 TIGRFAM ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007545 499.0
BYDH3_k127_1140708_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 309.0
BYDH3_k127_1140708_2 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000001505 167.0
BYDH3_k127_11431790_0 PFAM aminotransferase class I and II K11358 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007688 410.0
BYDH3_k127_11431790_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000000008277 187.0
BYDH3_k127_11431790_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000003738 194.0
BYDH3_k127_11444900_0 PFAM 4-hydroxyphenylacetate 3-hydroxylase N terminal K14534 - 4.2.1.120,5.3.3.3 6.865e-257 800.0
BYDH3_k127_11444900_1 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006137 321.0
BYDH3_k127_11444900_2 - - - - 0.00000000000001337 79.0
BYDH3_k127_11469798_0 TIGRFAM argininosuccinate lyase K01755 - 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 598.0
BYDH3_k127_11469798_1 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001868 276.0
BYDH3_k127_11469798_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K09482 - 6.3.5.7 0.00000000000000000005474 92.0
BYDH3_k127_11469798_3 NMT1-like family K02051 - - 0.00000000000005779 75.0
BYDH3_k127_11472165_0 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 1.905e-207 659.0
BYDH3_k127_11472165_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004309 277.0
BYDH3_k127_11472165_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000001041 229.0
BYDH3_k127_11472165_3 CoA binding domain K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000003416 144.0
BYDH3_k127_11474801_0 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 415.0
BYDH3_k127_11474801_1 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 315.0
BYDH3_k127_11474801_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000002173 117.0
BYDH3_k127_11474801_3 Domain of unknown function (DUF4921) K00965 - 2.7.7.12 0.000001145 51.0
BYDH3_k127_1147537_0 Protein of unknown function (DUF554) K07150 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002025 249.0
BYDH3_k127_1147537_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000001122 217.0
BYDH3_k127_1147537_2 Isochorismatase family - - - 0.0000000000000000000000000000000000000001529 156.0
BYDH3_k127_1147537_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000007956 130.0
BYDH3_k127_1147537_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000101 71.0
BYDH3_k127_11481263_0 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 406.0
BYDH3_k127_11481263_1 PFAM Radical SAM domain protein K07139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 322.0
BYDH3_k127_11481263_2 CoA binding domain K01905 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008382 297.0
BYDH3_k127_11481263_3 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001865 284.0
BYDH3_k127_11481263_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004045 251.0
BYDH3_k127_11481263_5 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.0000000000000000000000000000000000000006244 150.0
BYDH3_k127_11481263_6 Transcriptional regulator PadR-like family - - - 0.0000000000000000009076 93.0
BYDH3_k127_11501293_0 PFAM thiamine pyrophosphate protein domain protein TPP-binding K01652 - 2.2.1.6 2.314e-252 790.0
BYDH3_k127_11501293_1 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009606 452.0
BYDH3_k127_11501293_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 415.0
BYDH3_k127_11501293_3 NUDIX domain - - - 0.0000000000000000000000000000000000000000001675 166.0
BYDH3_k127_11501293_4 polyketide synthase K21792 - - 0.000000000000000000000000000000000000000006676 167.0
BYDH3_k127_11501293_5 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000008231 156.0
BYDH3_k127_11501293_6 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000007975 143.0
BYDH3_k127_11501293_7 - - - - 0.00000000000000000000000000000009988 127.0
BYDH3_k127_11501293_8 PFAM peptidase U32 K08303 - - 0.000000000000009717 77.0
BYDH3_k127_11501293_9 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) K05967 - - 0.0000000005797 60.0
BYDH3_k127_11507713_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 314.0
BYDH3_k127_11507713_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000006037 244.0
BYDH3_k127_11507713_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000001114 220.0
BYDH3_k127_11507713_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000254 214.0
BYDH3_k127_11507713_4 HEAT repeats - - - 0.0006222 52.0
BYDH3_k127_11513723_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000001098 251.0
BYDH3_k127_11513723_1 Signal transduction histidine kinase, nitrogen specific, NtrB K07708 - 2.7.13.3 0.000000000000000000000000000000000000007282 156.0
BYDH3_k127_11513723_2 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000008776 132.0
BYDH3_k127_11540285_0 Putative regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001117 237.0
BYDH3_k127_11540285_1 WbqC-like protein family - - - 0.00000000000000000000000000000000000000000000000000000004693 204.0
BYDH3_k127_11540285_2 Fatty acid desaturase K00496 - 1.14.15.3 0.0000007406 56.0
BYDH3_k127_11562101_0 PFAM Cys Met metabolism K01739 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005593 565.0
BYDH3_k127_11562101_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261 - 1.4.1.2,1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007464 512.0
BYDH3_k127_11562101_2 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000000000000000000000009194 106.0
BYDH3_k127_11566192_0 4-hydroxyphenylacetate K00483,K14534 - 1.14.14.9,4.2.1.120,5.3.3.3 4.505e-232 726.0
BYDH3_k127_11566192_1 PFAM peptidase M29 aminopeptidase II K19689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 505.0
BYDH3_k127_11566192_2 Bacterial regulatory proteins TetR family - - - 0.00000000000000000000000000000000000000000000000003383 186.0
BYDH3_k127_11566192_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000001958 157.0
BYDH3_k127_11566192_4 Enoyl-(Acyl carrier protein) reductase - - - 0.00004587 46.0
BYDH3_k127_1157134_0 PFAM GGDEF domain containing protein K21019 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008759 326.0
BYDH3_k127_1157134_1 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000006188 223.0
BYDH3_k127_1157134_2 PFAM flavin reductase domain protein FMN-binding - - - 0.0000000000000000000000000000000000000000000000000000000000006516 217.0
BYDH3_k127_1157134_3 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000002842 126.0
BYDH3_k127_1157134_4 4Fe-4S binding domain - - - 0.0000000000000000000002719 108.0
BYDH3_k127_1158690_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000003491 141.0
BYDH3_k127_1158690_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000262 78.0
BYDH3_k127_1158690_2 Sigma-54 factor interaction domain-containing protein K07713 - - 0.00000000008846 75.0
BYDH3_k127_11622192_0 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 449.0
BYDH3_k127_11622192_1 Patatin-like phospholipase K07001 - - 0.00002191 47.0
BYDH3_k127_11624629_0 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007997 340.0
BYDH3_k127_11624629_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007616 324.0
BYDH3_k127_11624629_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000000000000000002323 152.0
BYDH3_k127_11624629_3 RuvA, C-terminal domain K03550 - 3.6.4.12 0.00000000000000000000000000000000005069 141.0
BYDH3_k127_11648622_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 535.0
BYDH3_k127_11648622_1 Belongs to the bacterial histone-like protein family K05788 - - 0.000000000000000000000000005329 112.0
BYDH3_k127_11681675_0 Acyl-transferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000001001 241.0
BYDH3_k127_11681675_1 Domain of unknown function (DUF3783) - - - 0.00000000000000000001934 95.0
BYDH3_k127_11681675_2 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.000000001946 61.0
BYDH3_k127_11681675_3 RDD family - - - 0.000001062 55.0
BYDH3_k127_11697038_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009279 599.0
BYDH3_k127_11697038_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 390.0
BYDH3_k127_11697038_2 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000009475 132.0
BYDH3_k127_11697038_3 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000002963 113.0
BYDH3_k127_11697038_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000002244 64.0
BYDH3_k127_1171426_0 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 393.0
BYDH3_k127_1171426_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 383.0
BYDH3_k127_1171426_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000008854 245.0
BYDH3_k127_1171426_3 PFAM Tetratricopeptide TPR_2 repeat protein K09859 - - 0.0000000000000000000000000000000000000000000000000000001266 213.0
BYDH3_k127_1171426_4 Collagen-binding surface adhesin SpaP (Antigen I II family) K07337 - - 0.00000000000000000000000000000000000000000000000000005373 193.0
BYDH3_k127_1171426_5 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.000000000000000000000000000000000000000000003279 170.0
BYDH3_k127_1171426_6 methyltransferase - - - 0.000000000000000000000000000000000000003872 158.0
BYDH3_k127_1171426_7 Thioredoxin K03671 - - 0.0000000000000000000000000000002828 126.0
BYDH3_k127_1171426_8 PFAM RNA binding S1 domain protein K02945 - - 0.00000000000000000000000002162 111.0
BYDH3_k127_1171426_9 Phospholipid methyltransferase - - - 0.0000000000000000000000002876 111.0
BYDH3_k127_11721578_0 Pfam:DUF1446 - - - 3.682e-265 829.0
BYDH3_k127_11721578_1 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004994 313.0
BYDH3_k127_11721578_2 Biotin-requiring enzyme - - - 0.000000000000000000000000000000006697 134.0
BYDH3_k127_11799415_0 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 4.171e-208 670.0
BYDH3_k127_11799415_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004646 469.0
BYDH3_k127_11799415_2 PFAM cell wall hydrolase autolysin K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000001077 225.0
BYDH3_k127_11799415_3 WHG domain - - - 0.0000000000000000000000000000000000002654 145.0
BYDH3_k127_11799415_4 response regulator, receiver - - - 0.000000000000000000000001388 107.0
BYDH3_k127_11803317_0 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007206 351.0
BYDH3_k127_11813398_0 secondary active sulfate transmembrane transporter activity K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 485.0
BYDH3_k127_11813398_1 CO dehydrogenase/acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 388.0
BYDH3_k127_11813398_2 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000002411 267.0
BYDH3_k127_11813398_3 PFAM PfkB K00856 - 2.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000005093 257.0
BYDH3_k127_11813398_4 ORF6N domain - - - 0.0000000000000000000000000000000000000000000004154 171.0
BYDH3_k127_11813398_5 dihydromethanopterin reductase activity - - - 0.0000000000000000000000000000000000336 136.0
BYDH3_k127_11820751_0 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 329.0
BYDH3_k127_11820751_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.0000000000000000000000000000000000000000000008688 176.0
BYDH3_k127_11820751_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00001708 52.0
BYDH3_k127_11837688_0 glycosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 376.0
BYDH3_k127_11837688_1 Belongs to the transketolase family K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000622 186.0
BYDH3_k127_11837688_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000003098 145.0
BYDH3_k127_11847198_0 PFAM Iron-containing alcohol dehydrogenase - - - 5.485e-194 612.0
BYDH3_k127_11847198_1 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 598.0
BYDH3_k127_11847198_2 type IV pilus assembly PilZ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 336.0
BYDH3_k127_11847198_3 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000001099 211.0
BYDH3_k127_11859277_0 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 504.0
BYDH3_k127_11859277_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0000000000000005903 78.0
BYDH3_k127_11880283_0 PFAM amino acid-binding ACT domain protein - - - 0.00000000000000000000000000000000000000000000000000002237 192.0
BYDH3_k127_11880283_1 TIGRFAM YgiT-type zinc finger domain - - - 0.0000000000000000000000005632 105.0
BYDH3_k127_11880283_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000141 68.0
BYDH3_k127_11880283_3 PFAM thioesterase superfamily K02614 - - 0.000000000003531 72.0
BYDH3_k127_11880283_4 Domain of unknown function (DUF4258) - - - 0.000002092 49.0
BYDH3_k127_11887252_0 PFAM Acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 368.0
BYDH3_k127_11887252_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000004012 190.0
BYDH3_k127_11887252_2 hydroxymethylglutaryl-CoA reductase K00021 - 1.1.1.34 0.000000000000000000000000000000000000000000005873 171.0
BYDH3_k127_11887252_3 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000003428 162.0
BYDH3_k127_11887252_4 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000002044 130.0
BYDH3_k127_11887252_5 sporulation resulting in formation of a cellular spore K01449 - 3.5.1.28 0.000000000000000000000000000395 122.0
BYDH3_k127_11887252_6 - - - - 0.0000000000000002256 81.0
BYDH3_k127_11930009_0 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000008106 230.0
BYDH3_k127_11930009_1 COGs COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K03721 - - 0.0000000000000000000000000000000000000001951 159.0
BYDH3_k127_11930009_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000005381 67.0
BYDH3_k127_11934586_0 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 4.77e-265 822.0
BYDH3_k127_11934586_1 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003087 252.0
BYDH3_k127_11934586_2 ImpA, N-terminal, type VI secretion system K11902 - - 0.00000000000000000000000000000000000000000000000000000000000000007206 227.0
BYDH3_k127_11934586_3 ImpA, N-terminal, type VI secretion system K11902 - - 0.00000000000000000000000000000000000000000000000001203 189.0
BYDH3_k127_11949861_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000005484 187.0
BYDH3_k127_11949861_1 copper ion binding K05810 GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016679,GO:0016682,GO:0030312,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0046983,GO:0055114,GO:0071944 - 0.0000000000000000000000000000004824 130.0
BYDH3_k127_11949861_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000001136 114.0
BYDH3_k127_11949861_3 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000001129 102.0
BYDH3_k127_11949861_4 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000001115 86.0
BYDH3_k127_11958773_0 Conserved carboxylase domain K01571,K01960,K03416 - 2.1.3.1,4.1.1.3,6.4.1.1 2.528e-277 871.0
BYDH3_k127_11958773_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 387.0
BYDH3_k127_11958773_2 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 379.0
BYDH3_k127_11958773_3 Carboxyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000658 368.0
BYDH3_k127_11958773_4 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000002716 181.0
BYDH3_k127_11980876_0 Belongs to the GARS family K01945,K13713 GO:0000166,GO:0003674,GO:0003824,GO:0004637,GO:0005488,GO:0005524,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.6,6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009451 373.0
BYDH3_k127_11980876_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000002595 184.0
BYDH3_k127_11980876_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.7.7.87 0.00000000000000000000000000000008163 131.0
BYDH3_k127_11980876_3 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000838 46.0
BYDH3_k127_1200673_0 TIGRFAM acetylornithine and succinylornithine aminotransferase K00821,K05830,K09251 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009308,GO:0009310,GO:0009445,GO:0009447,GO:0009987,GO:0016740,GO:0016769,GO:0019842,GO:0030170,GO:0033094,GO:0034641,GO:0036094,GO:0042402,GO:0042802,GO:0043167,GO:0043168,GO:0044106,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:0097164,GO:1901363,GO:1901564,GO:1901565,GO:1901575 2.6.1.11,2.6.1.17,2.6.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 553.0
BYDH3_k127_1200673_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 447.0
BYDH3_k127_1200673_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007288 254.0
BYDH3_k127_1200673_3 - - - - 0.000000000000000000000000000000000000003298 160.0
BYDH3_k127_1200673_4 - - - - 0.00000000000000000000000000000000000002485 145.0
BYDH3_k127_1200673_5 cell adhesion involved in biofilm formation - - - 0.00000018 63.0
BYDH3_k127_12010489_0 Protein of unknown function (DUF1573) - - - 0.0000000000000000000000000000005765 129.0
BYDH3_k127_1201351_0 Iron-sulfur cluster-binding domain K06871 - - 2.528e-207 651.0
BYDH3_k127_1201351_1 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008771 295.0
BYDH3_k127_1201351_2 Protein of unknown function (DUF3313) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001106 243.0
BYDH3_k127_1201351_3 CHASE - - - 0.000000000000000000000000000000000000000001797 162.0
BYDH3_k127_1201351_4 Sulfatase - - - 0.000000000000000000001962 94.0
BYDH3_k127_12020957_0 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000003467 244.0
BYDH3_k127_12020957_1 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000005262 117.0
BYDH3_k127_12020957_2 HD domain - - - 0.00000000000000000001857 95.0
BYDH3_k127_12020957_3 Universal stress protein K06149 - - 0.000000000007499 69.0
BYDH3_k127_12030049_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897,K02182,K22133 - 6.2.1.3,6.2.1.48,6.2.1.8 9.014e-208 657.0
BYDH3_k127_12030049_1 Domain of unknown function (DUF4037) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 360.0
BYDH3_k127_12030049_2 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 317.0
BYDH3_k127_12030049_3 PFAM helix-turn-helix- domain containing protein AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 311.0
BYDH3_k127_12030049_4 glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000003715 254.0
BYDH3_k127_12030049_5 tartrate metabolic process K01676,K01678 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000003759 220.0
BYDH3_k127_12030049_6 Protein of unknown function (DUF4125) - - - 0.0000000000000000000000000000000000000000000002161 173.0
BYDH3_k127_12030049_7 SCP-2 sterol transfer family - - - 0.00000000000000000000000000000000000008765 145.0
BYDH3_k127_12031399_0 Sigma-70, region 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 336.0
BYDH3_k127_12031399_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000007599 162.0
BYDH3_k127_12037640_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 418.0
BYDH3_k127_12037640_1 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000001114 169.0
BYDH3_k127_12037640_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000001242 108.0
BYDH3_k127_12037640_3 carbohydrate transport K11688,K21395 - - 0.0000000000000000000003027 103.0
BYDH3_k127_1204867_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 468.0
BYDH3_k127_1204867_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 381.0
BYDH3_k127_1204867_2 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000007525 152.0
BYDH3_k127_1204867_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000009283 159.0
BYDH3_k127_12067328_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029,K10002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005959 372.0
BYDH3_k127_12067328_1 belongs to the bacterial solute-binding protein 3 family K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 346.0
BYDH3_k127_12074033_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006052 462.0
BYDH3_k127_12074033_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 366.0
BYDH3_k127_12074033_2 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 361.0
BYDH3_k127_12074033_3 Peptidase U32 K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 356.0
BYDH3_k127_12074033_4 Dinuclear metal center protein, YbgI family - - - 0.00000000000000000000000000000000000000000000000003617 187.0
BYDH3_k127_12074033_5 COG COG0210 Superfamily I DNA and RNA helicases DNA replication recombination and repair K03657 - 3.6.4.12 0.00000000000000000000000000000000000000005534 156.0
BYDH3_k127_12074033_6 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000001046 153.0
BYDH3_k127_12074033_7 C4-type zinc ribbon domain K07164 - - 0.00000000000000000000000000007199 124.0
BYDH3_k127_12074033_8 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000000000000004798 87.0
BYDH3_k127_1208725_0 PFAM CBS domain - - - 0.00000000000000000000000000000000000000000000000000000001895 200.0
BYDH3_k127_1208725_1 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000000004451 135.0
BYDH3_k127_1208725_2 synthetase K00666 - - 0.000000000000000000000001276 113.0
BYDH3_k127_1210297_0 PFAM Acetyl-CoA hydrolase transferase - - - 4.377e-212 668.0
BYDH3_k127_1210297_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 600.0
BYDH3_k127_1210297_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000418 117.0
BYDH3_k127_12103683_0 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides. Binds and recognizes a DNA motif (called the malT box) 5'-GGA TG GA-3' K03556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 456.0
BYDH3_k127_12103683_1 Tartrate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000002941 154.0
BYDH3_k127_12118382_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01006 - 2.7.9.1 8.785e-250 782.0
BYDH3_k127_12118382_1 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0001393 44.0
BYDH3_k127_12133275_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 507.0
BYDH3_k127_12133275_1 Major Facilitator Superfamily K08177 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 434.0
BYDH3_k127_12133275_2 Sporulation initiation inhibitor K03496 GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - 0.0000000000000000000000000000000000000000000000000000000000556 218.0
BYDH3_k127_12133275_3 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000002143 198.0
BYDH3_k127_12133275_4 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000006677 191.0
BYDH3_k127_12133275_5 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K04562 - - 0.00003829 55.0
BYDH3_k127_12145639_0 radical SAM domain protein K22318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004702 613.0
BYDH3_k127_12145639_1 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 522.0
BYDH3_k127_12145639_2 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 429.0
BYDH3_k127_12145639_3 PFAM Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 358.0
BYDH3_k127_12145639_4 histidine kinase, HAMP K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 305.0
BYDH3_k127_12145639_5 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000000000000000000000000000000003371 198.0
BYDH3_k127_12170664_0 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008852 272.0
BYDH3_k127_12170664_1 translation release factor activity - - - 0.00000000000000000000000000000000131 133.0
BYDH3_k127_12170664_2 Universal stress protein family - - - 0.0000000000000000000000000000003198 130.0
BYDH3_k127_12201704_0 Uncharacterised conserved protein (DUF2156) K01163 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 344.0
BYDH3_k127_12201704_2 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006806 316.0
BYDH3_k127_12201704_3 transcriptional regulator - - - 0.000000000000000000000000000000000000000003408 161.0
BYDH3_k127_12201704_4 Putative transmembrane protein (PGPGW) - - - 0.000000000000000000000000001779 117.0
BYDH3_k127_12201704_5 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000001879 67.0
BYDH3_k127_1221526_0 dehydratase K04113,K20025,K20626 - 1.3.7.8,4.2.1.157,4.2.1.54 0.00000000000000000000000000000000000000000000000000000004183 212.0
BYDH3_k127_1221526_1 aspartate kinase, monofunctional class K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000002077 175.0
BYDH3_k127_1221526_2 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000228 50.0
BYDH3_k127_12226181_0 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 380.0
BYDH3_k127_12226181_1 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000008407 188.0
BYDH3_k127_12226181_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000004816 58.0
BYDH3_k127_12240782_0 TIGRFAM Penicillin-binding protein 2 K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007053 494.0
BYDH3_k127_12240782_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000001195 112.0
BYDH3_k127_12241710_0 S-adenosylmethionine-dependent methyltransferase K06969,K12297 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.191,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 462.0
BYDH3_k127_12241710_1 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 328.0
BYDH3_k127_12241710_2 Curli production assembly/transport component CsgG - - - 0.0000000000000000000000000000000000000000000000000000000002097 213.0
BYDH3_k127_12241710_3 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000005715 180.0
BYDH3_k127_12241710_4 - - - - 0.00000000000000000000000002477 110.0
BYDH3_k127_12241710_5 - - - - 0.000000000000000002143 97.0
BYDH3_k127_12241710_6 alginic acid biosynthetic process - - - 0.000000000000001229 84.0
BYDH3_k127_12263137_0 Binding-protein-dependent transport system inner membrane component K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 308.0
BYDH3_k127_12263137_1 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 286.0
BYDH3_k127_12263137_2 extracellular solute-binding protein, family 3 K02030 - - 0.000000000000000000000000000000000000000000000000000000005363 201.0
BYDH3_k127_12267637_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 1.963e-303 945.0
BYDH3_k127_12267637_1 Peptidase U62 modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003133 286.0
BYDH3_k127_12267637_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005641 282.0
BYDH3_k127_12267637_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000001241 259.0
BYDH3_k127_12267637_4 Belongs to the acetyltransferase family. ArgA subfamily K00619,K14681 GO:0003674,GO:0003824,GO:0004042,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016043,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0040007,GO:0042450,GO:0042802,GO:0042803,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 0.0000000000000000000000000000000000000000000000000304 183.0
BYDH3_k127_1229277_0 Putative exonuclease, RdgC K03554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004187 323.0
BYDH3_k127_1229277_1 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000001572 200.0
BYDH3_k127_1229277_2 PFAM Radical SAM K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000004017 190.0
BYDH3_k127_1229277_3 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000005615 157.0
BYDH3_k127_1229277_4 Membrane - - - 0.00000000000000000000000000000007456 128.0
BYDH3_k127_1229346_0 AMP-binding enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000323 334.0
BYDH3_k127_1229346_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000003926 232.0
BYDH3_k127_1229346_3 Peptidyl-prolyl cis-trans K01802,K03772 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000005154 205.0
BYDH3_k127_1229346_4 5-methylcytosine-specific restriction enzyme K07451 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0008327,GO:0036094,GO:0043565,GO:0097159,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000001044 194.0
BYDH3_k127_1229346_5 TIGRFAM C_GCAxxG_C_C family - - - 0.000000000000000000000000001143 115.0
BYDH3_k127_1229346_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000269 92.0
BYDH3_k127_12328442_0 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008677 337.0
BYDH3_k127_12328442_1 - - - - 0.0000000000000000000000000000000002899 140.0
BYDH3_k127_12328442_2 DJ-1/PfpI family - - - 0.0000000001006 62.0
BYDH3_k127_12337121_0 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009785 415.0
BYDH3_k127_12375067_0 SMART Metal-dependent phosphohydrolase, HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 340.0
BYDH3_k127_12375067_1 NADPH-dependent FMN reductase K03809 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 314.0
BYDH3_k127_12375067_2 deoxyhypusine monooxygenase activity - - - 0.0000000000000001531 93.0
BYDH3_k127_12376006_0 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 391.0
BYDH3_k127_12376006_1 PFAM 2-nitropropane dioxygenase NPD K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 363.0
BYDH3_k127_12376006_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 320.0
BYDH3_k127_12376006_3 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000001401 211.0
BYDH3_k127_12377745_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 473.0
BYDH3_k127_12377745_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 427.0
BYDH3_k127_12377745_2 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000003498 175.0
BYDH3_k127_12377745_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000059 91.0
BYDH3_k127_12393328_0 HDOD domain - - - 0.00000000000000000000000000002168 127.0
BYDH3_k127_12393328_1 histidine kinase A domain protein - - - 0.00000001459 64.0
BYDH3_k127_12401280_0 Transport permease protein K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007698 349.0
BYDH3_k127_12401280_1 CoA-transferase family III K01796 - 5.1.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007217 291.0
BYDH3_k127_12401280_2 ABC-type polysaccharide polyol phosphate transport system ATPase component K09691 - - 0.000000000000000000000000000000000000000000000000000000000000002682 220.0
BYDH3_k127_12401280_3 Glycosyl transferase 4-like - - - 0.0000000000000000000003685 109.0
BYDH3_k127_1242550_0 Sugar (and other) transporter K03446 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 539.0
BYDH3_k127_1242550_1 HlyD membrane-fusion protein of T1SS K03543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003991 268.0
BYDH3_k127_1242550_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000001857 207.0
BYDH3_k127_1246643_0 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 617.0
BYDH3_k127_1246643_1 - - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000001073 140.0
BYDH3_k127_12477541_0 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 346.0
BYDH3_k127_12477541_1 Cytochrome b5-like Heme/Steroid binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002865 276.0
BYDH3_k127_12477541_2 Protein involved in outer membrane biogenesis K07289,K09800 - - 0.00000000000000000000000000000000000000000000005916 186.0
BYDH3_k127_12492938_0 CoA binding domain K01905 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001692 293.0
BYDH3_k127_12492938_1 Phosphate acetyl/butaryl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000001785 229.0
BYDH3_k127_12492938_2 Belongs to the acetokinase family K00929 - 2.7.2.7 0.00000000000000000007125 91.0
BYDH3_k127_12492938_3 ACT domain protein - - - 0.0000000000000008412 79.0
BYDH3_k127_12492938_4 PFAM ACT domain - - - 0.0000000006756 61.0
BYDH3_k127_12492938_5 Belongs to the acetokinase family K00929 - 2.7.2.7 0.000001322 53.0
BYDH3_k127_12521674_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000001505 255.0
BYDH3_k127_12521674_1 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000002472 179.0
BYDH3_k127_12530068_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000005444 236.0
BYDH3_k127_12530068_1 creatinase K01262,K01271 - 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000293 211.0
BYDH3_k127_12530068_2 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000001484 183.0
BYDH3_k127_12530068_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000002083 121.0
BYDH3_k127_12530068_4 PFAM peptidase M24 K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000002048 91.0
BYDH3_k127_12557395_0 PFAM 4Fe-4S - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004705 283.0
BYDH3_k127_12557395_1 cyclic nucleotide binding K01420,K21564 - - 0.0000000000000000000000000000000000003657 148.0
BYDH3_k127_12557395_2 NeuB family K03856,K04516 - 2.5.1.54,5.4.99.5 0.00000000000072 68.0
BYDH3_k127_12557395_3 PFAM major facilitator superfamily MFS_1 K08177 GO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0008150,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0031667,GO:0031668,GO:0031669,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:0071944 - 0.000000000006104 74.0
BYDH3_k127_12560370_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 319.0
BYDH3_k127_12560370_1 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000002106 205.0
BYDH3_k127_12560370_2 PFAM Vitamin B12 dependent methionine synthase, activation domain - - - 0.000000000000000000000000000000000000000000000000355 184.0
BYDH3_k127_12568045_0 Cytochrome c554 and c-prime - - - 3.563e-231 739.0
BYDH3_k127_12568045_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K03286 - - 0.000000000000000000000000000000000000000000000000000000000004258 221.0
BYDH3_k127_12568045_2 heat shock protein binding K05516,K05801 - - 0.0000000000000001919 92.0
BYDH3_k127_1257981_0 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000001605 267.0
BYDH3_k127_1257981_1 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006235 250.0
BYDH3_k127_1257981_2 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000005213 242.0
BYDH3_k127_1257981_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000001263 227.0
BYDH3_k127_1257981_4 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000005489 204.0
BYDH3_k127_12591849_0 PFAM RNA polymerase sigma factor 54, interaction - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003378 339.0
BYDH3_k127_12591849_1 - - - - 0.00000000000000000000000000000000001327 141.0
BYDH3_k127_12591849_2 long-chain fatty acid transport protein - - - 0.0000000000000000000000001343 110.0
BYDH3_k127_12611123_0 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000004989 182.0
BYDH3_k127_12611123_1 PFAM Sugar isomerase (SIS) - - - 0.00000000000000000000000002574 113.0
BYDH3_k127_12611123_2 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000003638 97.0
BYDH3_k127_12612823_0 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008098 445.0
BYDH3_k127_12612823_1 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 414.0
BYDH3_k127_12612823_2 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008285 287.0
BYDH3_k127_12612823_3 PFAM Class II aldolase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000002137 229.0
BYDH3_k127_12612823_4 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00112 - 1.1.5.3 0.0000000000000000000000000000000000000003494 164.0
BYDH3_k127_12612823_5 Peptidase family M23 - - - 0.00000000000000000000000000000000000001507 162.0
BYDH3_k127_12626034_0 Belongs to the SfsA family K06206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000212 283.0
BYDH3_k127_12626034_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000001524 241.0
BYDH3_k127_12626034_2 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000149 218.0
BYDH3_k127_12626034_3 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.0000000000000000000000000000000000000000000000000000000616 203.0
BYDH3_k127_12674934_0 response regulator K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 293.0
BYDH3_k127_12674934_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001081 265.0
BYDH3_k127_12709009_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.349e-238 776.0
BYDH3_k127_12709009_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 300.0
BYDH3_k127_12709009_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000009394 172.0
BYDH3_k127_12709009_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000003948 85.0
BYDH3_k127_12709009_4 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006457,GO:0006458,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030288,GO:0030313,GO:0031647,GO:0031975,GO:0033218,GO:0036211,GO:0042277,GO:0042597,GO:0043163,GO:0043165,GO:0043170,GO:0043412,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0044764,GO:0045229,GO:0050821,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0060274,GO:0061024,GO:0061077,GO:0065007,GO:0065008,GO:0071704,GO:0071709,GO:0071840,GO:0140096,GO:1901564 5.2.1.8 0.0000001266 63.0
BYDH3_k127_12717171_0 Ion transport 2 domain protein K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 304.0
BYDH3_k127_12717171_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008512 277.0
BYDH3_k127_12717171_2 HD domain - - - 0.0000000000000000000000000000000000003207 152.0
BYDH3_k127_12717171_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000003327 138.0
BYDH3_k127_12717171_4 Sigma-54 factor interaction domain-containing protein K07713 - - 0.000000000000000000001162 102.0
BYDH3_k127_12717171_5 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000152 50.0
BYDH3_k127_12717171_6 TIGRFAM MJ0042 family finger-like protein - - - 0.0001765 53.0
BYDH3_k127_12730817_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 608.0
BYDH3_k127_12730817_1 TIGRFAM cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565 458.0
BYDH3_k127_12730817_2 Acyl-CoA synthetase (NDP forming) K01905,K18594,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 371.0
BYDH3_k127_12730817_3 PFAM Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000001953 221.0
BYDH3_k127_12730817_4 transcriptional regulator, Rrf2 family - - - 0.000000000000000000000000000000000000000004691 158.0
BYDH3_k127_12750174_0 TIGRFAM SagB-type dehydrogenase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005124 250.0
BYDH3_k127_12750174_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000001684 170.0
BYDH3_k127_12750174_2 Trp repressor protein - - - 0.00000000000000000001628 92.0
BYDH3_k127_12787829_0 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000000000000000000000002073 213.0
BYDH3_k127_12787829_1 FAD linked oxidase domain protein K00104 - 1.1.3.15 0.000000000000000000000000000000000000452 157.0
BYDH3_k127_12805027_0 PFAM Glycosyl transferase family 2 K10012 - 2.4.2.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 487.0
BYDH3_k127_12805027_1 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.000000000000000000000000000000000001962 141.0
BYDH3_k127_12821849_0 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000001681 175.0
BYDH3_k127_12821849_1 PFAM SH3 type 3 K07184 - - 0.000000000000003901 83.0
BYDH3_k127_12848751_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 319.0
BYDH3_k127_12848751_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000001485 259.0
BYDH3_k127_12848751_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000006438 161.0
BYDH3_k127_12848751_3 Outer membrane protein (OmpH-like) K06142 - - 0.0000000004963 67.0
BYDH3_k127_12865942_0 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003247 503.0
BYDH3_k127_12865942_1 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 0.00000000000000000000000000000000000000000000000000002667 190.0
BYDH3_k127_12865942_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.000000000000000000000000179 106.0
BYDH3_k127_12880154_0 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000001793 201.0
BYDH3_k127_12880154_1 Glycosyl hydrolase family 79, N-terminal domain - - - 0.000000000000000000000002869 108.0
BYDH3_k127_12882791_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 507.0
BYDH3_k127_12882791_1 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006968 344.0
BYDH3_k127_12882791_2 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.00000000000000000000000000000000000000000000000001874 190.0
BYDH3_k127_12884267_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.18 1.55e-206 657.0
BYDH3_k127_12884267_1 Methyl-accepting chemotaxis protein (MCP) signalling domain - - - 0.00000000000000000000000000000000000000002552 167.0
BYDH3_k127_12884267_2 Methyl-accepting chemotaxis protein (MCP) signalling domain - - - 0.00000000000000287 84.0
BYDH3_k127_12907182_0 Uroporphyrinogen decarboxylase (URO-D) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 518.0
BYDH3_k127_12907182_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000036 231.0
BYDH3_k127_12907182_2 Methionine synthase B12-binding module cap domain protein - - - 0.000000000000000000000000000000000000000000000000000000000007178 215.0
BYDH3_k127_12907182_3 transcriptional regulator K18301 - - 0.0000000000000000000000000000000000000000000000001279 184.0
BYDH3_k127_12907182_4 transcriptional - - - 0.00000000000000002936 91.0
BYDH3_k127_12907182_5 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 - 2.1.1.13 0.0000003356 53.0
BYDH3_k127_12910393_0 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007157 429.0
BYDH3_k127_12910393_1 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000000000000000000004426 161.0
BYDH3_k127_12910393_2 denitrification pathway K02569,K15876 - - 0.00000000000000000001133 95.0
BYDH3_k127_12910393_3 NapC/NirT cytochrome c family, N-terminal region - - - 0.000007511 51.0
BYDH3_k127_12948698_0 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007393 323.0
BYDH3_k127_12948698_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 311.0
BYDH3_k127_12948698_2 COG2206 HD-GYP domain - - - 0.0000000000000000000000000000000000000000000152 174.0
BYDH3_k127_12948698_3 ATP phosphoribosyltransferase K00765 - 2.4.2.17 0.00000000000001935 74.0
BYDH3_k127_12948698_4 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 - - 0.000000001582 59.0
BYDH3_k127_12954851_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 8.742e-269 847.0
BYDH3_k127_12954851_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 489.0
BYDH3_k127_12954851_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009292,GO:0009294,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030420,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0050896,GO:0051704,GO:0051716,GO:0071496 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 451.0
BYDH3_k127_12954851_3 Modulates RecA activity K03565 GO:0003674,GO:0005488,GO:0005515,GO:0006282,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0031323,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071496,GO:0080090,GO:0080134,GO:0080135,GO:0098772,GO:2001020 - 0.0000000006782 65.0
BYDH3_k127_12955043_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 4.508e-233 734.0
BYDH3_k127_12955043_1 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 534.0
BYDH3_k127_12955043_2 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003568 252.0
BYDH3_k127_12955043_3 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.00000000000000000000000000000000000000000000000000000242 196.0
BYDH3_k127_12955043_4 - - - - 0.000000000000000000000000000000000000000000000000006677 190.0
BYDH3_k127_12955043_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000002113 173.0
BYDH3_k127_12955043_6 - - - - 0.000000000000000000000000000000002002 130.0
BYDH3_k127_12955043_7 FCD - - - 0.000000000000000001469 94.0
BYDH3_k127_12955043_8 Protein involved in outer membrane biogenesis K07289 - - 0.000000000000000009341 96.0
BYDH3_k127_13004062_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1089.0
BYDH3_k127_13020560_0 Curli production assembly/transport component CsgG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 597.0
BYDH3_k127_13020560_1 Protein of unknown function (DUF1722) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 454.0
BYDH3_k127_13020560_2 Curli production assembly/transport component CsgG - - - 0.000000000000000000811 94.0
BYDH3_k127_13020560_3 cAMP biosynthetic process - - - 0.000000000000000003824 91.0
BYDH3_k127_13028232_0 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 380.0
BYDH3_k127_13028232_1 ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003222 276.0
BYDH3_k127_13028232_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000162 194.0
BYDH3_k127_13028232_3 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000001187 176.0
BYDH3_k127_13028232_4 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.00000000000000000000000000000007862 126.0
BYDH3_k127_13046732_0 Glycosyl hydrolase family 57 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 433.0
BYDH3_k127_13046732_1 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.000000000000002057 77.0
BYDH3_k127_13055642_0 Inorganic H+ pyrophosphatase K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 500.0
BYDH3_k127_13055642_1 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000017 223.0
BYDH3_k127_13055642_2 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000001198 111.0
BYDH3_k127_13063687_0 Magnesium chelatase, subunit ChlI - - - 0.0000000000000000000000000000000000000000000000000000000000000000001442 252.0
BYDH3_k127_1306488_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000002597 269.0
BYDH3_k127_1306488_1 tartrate metabolic process K01676,K01678 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000001749 212.0
BYDH3_k127_1306488_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.00000000000000000000000000000005526 127.0
BYDH3_k127_13071497_0 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 314.0
BYDH3_k127_13071497_1 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 306.0
BYDH3_k127_13105174_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 2.062e-219 686.0
BYDH3_k127_13105174_1 YtkA-like - - - 0.0000000000000000000000000405 112.0
BYDH3_k127_13105174_2 Outer membrane efflux protein - - - 0.000000000002674 72.0
BYDH3_k127_13112295_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000525 246.0
BYDH3_k127_13112295_1 Found in ATP-dependent protease La (LON) K01338 - 3.4.21.53 0.0000000000003197 72.0
BYDH3_k127_13112295_2 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.000001647 58.0
BYDH3_k127_13125420_0 PFAM formate-tetrahydrofolate ligase FTHFS K01938 - 6.3.4.3 9.333e-199 632.0
BYDH3_k127_13125420_1 Thiolase, C-terminal domain K00626,K00632 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000006113 201.0
BYDH3_k127_13125420_2 - - - - 0.00000000002378 66.0
BYDH3_k127_1333139_0 tRNA nucleotidyltransferase poly(A) polymerase K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 613.0
BYDH3_k127_1333139_1 PFAM cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 364.0
BYDH3_k127_1333139_2 Phage integrase, N-terminal SAM-like domain K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005352 299.0
BYDH3_k127_1333139_3 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000001767 136.0
BYDH3_k127_1333139_4 Putative cyclase - - - 0.0000000000000000000000007029 104.0
BYDH3_k127_1333139_5 repeat-containing protein - - - 0.00002439 54.0
BYDH3_k127_1376753_0 Lipocalin-like domain K03098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006526 244.0
BYDH3_k127_1376753_2 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000007627 136.0
BYDH3_k127_1376753_3 - - - - 0.0000000000000000000000000000002327 128.0
BYDH3_k127_1376753_4 - - - - 0.000001692 56.0
BYDH3_k127_1389975_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 623.0
BYDH3_k127_1389975_1 PFAM Acetyl-CoA hydrolase transferase K18122 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 350.0
BYDH3_k127_1397061_0 regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000161 196.0
BYDH3_k127_1397061_1 - - - - 0.00000000005006 73.0
BYDH3_k127_1405017_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007626 280.0
BYDH3_k127_1405017_1 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000003698 200.0
BYDH3_k127_1405079_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006262 594.0
BYDH3_k127_1405079_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 390.0
BYDH3_k127_1405079_2 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 370.0
BYDH3_k127_1405079_3 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000003476 232.0
BYDH3_k127_1405079_4 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.00000000000006668 80.0
BYDH3_k127_146829_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 424.0
BYDH3_k127_146829_1 PFAM flavin reductase domain protein FMN-binding - - - 0.000000000000000000000000000000002354 131.0
BYDH3_k127_146829_2 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.00000000000000000000000000001031 120.0
BYDH3_k127_146829_3 copG family - - - 0.0000000000000003111 81.0
BYDH3_k127_1488868_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 537.0
BYDH3_k127_1488868_1 Cytochrome bd-I oxidase subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003084 350.0
BYDH3_k127_1488868_2 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 350.0
BYDH3_k127_1488868_3 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004228 335.0
BYDH3_k127_1488868_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000004715 259.0
BYDH3_k127_1488868_5 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000003799 191.0
BYDH3_k127_1495598_0 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 297.0
BYDH3_k127_1495598_1 PFAM Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.000000000000000000000000000000000000000000000000002666 184.0
BYDH3_k127_1495598_2 PFAM Glutaredoxin K06191 - - 0.000000000000000000000002898 106.0
BYDH3_k127_1498938_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 631.0
BYDH3_k127_1521670_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.564e-257 801.0
BYDH3_k127_1521670_1 TIGRFAM LAO AO transport system ATPase K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 325.0
BYDH3_k127_1521670_2 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000003393 200.0
BYDH3_k127_1527695_0 CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette K15342 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 449.0
BYDH3_k127_1527695_1 PD-(D/E)XK nuclease superfamily K07464 - 3.1.12.1 0.000000000000000000000000000000000000000000000000000000000461 209.0
BYDH3_k127_1527695_2 CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette K09951 - - 0.00000000000000000000000002031 110.0
BYDH3_k127_1588581_0 glycyl-tRNA aminoacylation K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 605.0
BYDH3_k127_1588581_1 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 582.0
BYDH3_k127_1588581_10 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000007924 144.0
BYDH3_k127_1588581_11 Periplasmic binding protein K01999 - - 0.000000000000000000000000003023 126.0
BYDH3_k127_1588581_12 Involved in DNA repair and RecF pathway recombination K03474,K03584 GO:0008150,GO:0009314,GO:0009628,GO:0050896 2.6.99.2 0.0000000000000000001937 97.0
BYDH3_k127_1588581_13 Glutaredoxin K03676 - - 0.0000000000000001134 80.0
BYDH3_k127_1588581_2 PFAM glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007115 449.0
BYDH3_k127_1588581_3 SMART metal-dependent phosphohydrolase HD region K01129 - 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 384.0
BYDH3_k127_1588581_4 AMP-binding enzyme K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 364.0
BYDH3_k127_1588581_5 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 352.0
BYDH3_k127_1588581_6 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 347.0
BYDH3_k127_1588581_7 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 300.0
BYDH3_k127_1588581_8 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002706 274.0
BYDH3_k127_1588581_9 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003929 261.0
BYDH3_k127_1607118_0 Belongs to the flagella basal body rod proteins family K02396 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 305.0
BYDH3_k127_1607118_1 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000000000001568 252.0
BYDH3_k127_1607118_2 amidase activity K03796 - - 0.000000000000000000000000000000001149 140.0
BYDH3_k127_1607118_3 PFAM Polysaccharide deacetylase - - - 0.000000000000000000000000000001272 128.0
BYDH3_k127_1607118_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000001576 112.0
BYDH3_k127_1607118_5 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.0000000000000000001234 91.0
BYDH3_k127_1607118_6 PFAM ATP synthase I chain - - - 0.000000000004207 72.0
BYDH3_k127_1607118_7 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.00000001764 59.0
BYDH3_k127_1629454_0 asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 319.0
BYDH3_k127_1629454_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009716 309.0
BYDH3_k127_1629454_2 PFAM natural resistance-associated macrophage protein - - - 0.0000000000000000001223 90.0
BYDH3_k127_1639438_0 Type VI secretion system, TssF K11896 - - 4.166e-244 767.0
BYDH3_k127_1639438_1 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 349.0
BYDH3_k127_1639438_2 type VI secretion protein K11895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 294.0
BYDH3_k127_1639438_3 Type VI secretion system effector, Hcp K11903 - - 0.000000000000000000000000000000000000000000000000000155 190.0
BYDH3_k127_1639438_4 Gene 25-like lysozyme K11897 - - 0.0000000000000000000000000000000001958 137.0
BYDH3_k127_1667284_0 NAD(P)H-binding K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 475.0
BYDH3_k127_1667284_1 enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 337.0
BYDH3_k127_1667284_2 Uncharacterised conserved protein (DUF2156) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 334.0
BYDH3_k127_1667284_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 314.0
BYDH3_k127_1667284_4 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000009236 149.0
BYDH3_k127_1685058_0 Biotin-lipoyl like K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 410.0
BYDH3_k127_1685058_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 320.0
BYDH3_k127_1685058_2 Hydrophobe Amphiphile Efflux-1 (HAE1) Family K03296,K18138 - - 0.000000000000000000000000000000000003652 137.0
BYDH3_k127_1685058_3 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 0.0000000000000000000001775 97.0
BYDH3_k127_1685058_4 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 0.000000000005603 65.0
BYDH3_k127_1686715_0 PFAM Aminopeptidase I zinc metalloprotease (M18) K01267 - 3.4.11.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 485.0
BYDH3_k127_1686715_1 Elongator protein 3, MiaB family, Radical SAM K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005993 402.0
BYDH3_k127_1686715_2 Histidine kinase K02482 - 2.7.13.3 0.000000003335 66.0
BYDH3_k127_1686715_3 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000002321 50.0
BYDH3_k127_1690539_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009507 472.0
BYDH3_k127_1690539_1 transporter, DctM subunit K11690 - - 0.000000000000000000000000000000000000000000000000000000000005198 211.0
BYDH3_k127_1690539_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000001359 193.0
BYDH3_k127_1696484_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 325.0
BYDH3_k127_1696484_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000109 201.0
BYDH3_k127_1696484_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000008364 150.0
BYDH3_k127_1696484_3 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000005975 132.0
BYDH3_k127_1726139_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 7.659e-225 713.0
BYDH3_k127_1726139_1 Fe-S center protein K07138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 391.0
BYDH3_k127_1726139_2 NAD binding K03778 - 1.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004129 353.0
BYDH3_k127_1726139_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 340.0
BYDH3_k127_1726139_4 Nudix N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000003379 247.0
BYDH3_k127_1726139_5 Cysteine dioxygenase type I - - - 0.000000000000000000000000000000000001716 147.0
BYDH3_k127_1808545_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 301.0
BYDH3_k127_1808545_1 - - - - 0.000000000000000000000000000000000000000000000000000002184 192.0
BYDH3_k127_1850281_0 Alpha/beta hydrolase family K06889,K07397 - - 0.0000000000000000000000000000000000000000000000000000784 196.0
BYDH3_k127_1850281_1 Sirohaem synthase dimerisation region K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000000005671 173.0
BYDH3_k127_1850281_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006536,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008883,GO:0009058,GO:0009064,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019353,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0033526,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 1.2.1.70 0.000000000000000000000000000000000183 143.0
BYDH3_k127_1850281_3 Cytochrome C assembly protein - - - 0.000000000000000000000000000004768 133.0
BYDH3_k127_1880135_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007513 440.0
BYDH3_k127_1880135_1 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000007775 184.0
BYDH3_k127_1880135_2 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000006636 55.0
BYDH3_k127_1900092_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007924 363.0
BYDH3_k127_1900092_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.000000000000000000000000000000000000000000000000000000000000000002528 237.0
BYDH3_k127_1919458_0 glutamate dehydrogenase [NAD(P)+] activity K00262 - 1.4.1.4 6.682e-239 744.0
BYDH3_k127_1923305_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 3.722e-205 644.0
BYDH3_k127_1923305_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001044 276.0
BYDH3_k127_1944437_0 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 420.0
BYDH3_k127_1944437_1 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 426.0
BYDH3_k127_1944437_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 396.0
BYDH3_k127_1944437_3 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002312 278.0
BYDH3_k127_1944437_4 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000002188 258.0
BYDH3_k127_1944437_5 acetyltransferase K06977 GO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 - 0.0000000000000002497 79.0
BYDH3_k127_1947172_0 Saccharopine dehydrogenase C-terminal domain K00290 - 1.5.1.7 2.867e-211 661.0
BYDH3_k127_1947172_1 Belongs to the Orn Lys Arg decarboxylase class-II family. NspC subfamily K13747 - 4.1.1.96 0.00000000000000000000000000000000000002592 147.0
BYDH3_k127_1947172_2 Belongs to the arginase family K01480 - 3.5.3.11 0.000001963 51.0
BYDH3_k127_1985352_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 471.0
BYDH3_k127_1985352_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 360.0
BYDH3_k127_1985352_2 arabinose-5-phosphate isomerase activity K01627,K03281,K06041 - 2.5.1.55,5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000003689 241.0
BYDH3_k127_1985352_3 cheY-homologous receiver domain - - - 0.000000000000000000000000000004016 123.0
BYDH3_k127_1985352_4 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000001121 120.0
BYDH3_k127_1985352_5 Biopolymer transport protein ExbD/TolR K03559 - - 0.00005115 51.0
BYDH3_k127_1985935_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 506.0
BYDH3_k127_1985935_1 Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 372.0
BYDH3_k127_1996653_0 COG1056 Nicotinamide mononucleotide adenylyltransferase K00952 - 2.7.7.1 0.000000000000000000000000000000000000000000000000000000000002712 214.0
BYDH3_k127_1996653_1 Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT K00320 - 1.5.98.2 0.0000000000000000000000000000000000001788 143.0
BYDH3_k127_1996653_2 PFAM Band 7 protein - - - 0.0000000000000000000000000000001775 134.0
BYDH3_k127_2015545_0 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004669 577.0
BYDH3_k127_2015545_1 Acyl-CoA dehydrogenase type 2 domain - - - 0.000000000000000000000000000000000000000000001834 171.0
BYDH3_k127_2015545_2 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000206 153.0
BYDH3_k127_2015545_3 Bacterial regulatory proteins, tetR family - - - 0.000000000002051 76.0
BYDH3_k127_2047134_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.339e-212 668.0
BYDH3_k127_2047134_1 TIGRFAM DNA polymerase III, alpha subunit K02337,K14162 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 305.0
BYDH3_k127_2047134_2 signal peptide peptidase SppA, 36K type K04773 - - 0.0000000000000000000000000000000000000000000000000007209 191.0
BYDH3_k127_2065810_0 PFAM Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004151 342.0
BYDH3_k127_2065810_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000849 276.0
BYDH3_k127_2068222_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004297 385.0
BYDH3_k127_2068222_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008272 312.0
BYDH3_k127_2068222_2 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000001926 140.0
BYDH3_k127_2068222_3 COG0110 Acetyltransferase (isoleucine patch superfamily) - - - 0.0000000000000000000000000000000281 133.0
BYDH3_k127_2072582_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 374.0
BYDH3_k127_2072582_1 Dehydrogenase E1 component K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000001101 228.0
BYDH3_k127_2077153_0 Iron hydrogenase small subunit K00123,K00336,K18006,K18332 - 1.12.1.2,1.12.1.3,1.17.1.9,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 566.0
BYDH3_k127_2077153_1 Iron hydrogenase small subunit K00123,K00336,K18006,K18332 - 1.12.1.2,1.12.1.3,1.17.1.9,1.6.5.3 0.00000000000000000000000000000000000000000003278 164.0
BYDH3_k127_2077153_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 0.00000000000000000000009683 98.0
BYDH3_k127_2079849_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1362.0
BYDH3_k127_2079849_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 328.0
BYDH3_k127_2108246_0 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 340.0
BYDH3_k127_2108246_1 ATP synthase alpha/beta chain, C terminal domain K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008183 289.0
BYDH3_k127_2108246_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000000000000000001536 178.0
BYDH3_k127_2108246_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000001029 132.0
BYDH3_k127_2148005_0 PFAM 3-hydroxyacyl-CoA dehydrogenase K00074,K15016 - 1.1.1.157,1.1.1.35,4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 455.0
BYDH3_k127_2148005_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 391.0
BYDH3_k127_2148005_2 Protein of unknown function (DUF3047) - - - 0.0000000000000000000000005744 106.0
BYDH3_k127_2148005_3 Protein of unknown function (DUF3047) - - - 0.0000000000000000000003287 98.0
BYDH3_k127_2160368_0 AMP-binding enzyme K01897 - 6.2.1.3 3.419e-202 633.0
BYDH3_k127_2160368_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 461.0
BYDH3_k127_2160368_10 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000000000000002966 94.0
BYDH3_k127_2160368_11 - - - - 0.00000000000000352 85.0
BYDH3_k127_2160368_12 ComEA protein K02237 - - 0.0000000000593 68.0
BYDH3_k127_2160368_13 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00000000106 62.0
BYDH3_k127_2160368_14 Protein of unknown function (FYDLN_acid) - - - 0.0000006916 61.0
BYDH3_k127_2160368_2 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 464.0
BYDH3_k127_2160368_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 357.0
BYDH3_k127_2160368_4 Pyruvate:ferredoxin oxidoreductase core domain II K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000675 349.0
BYDH3_k127_2160368_5 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 298.0
BYDH3_k127_2160368_6 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000003999 246.0
BYDH3_k127_2160368_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.00000000000000000000000000000000000000000000001749 176.0
BYDH3_k127_2160368_8 ACT domain - - - 0.0000000000000000000000000000000005219 135.0
BYDH3_k127_2160368_9 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000003707 113.0
BYDH3_k127_2172733_0 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009548 407.0
BYDH3_k127_2172733_1 binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004746 332.0
BYDH3_k127_2172733_2 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000004668 191.0
BYDH3_k127_2172733_3 Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK) K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000004046 164.0
BYDH3_k127_2173411_0 cyclic 2,3-diphosphoglycerate synthetase activity - - - 4.339e-209 660.0
BYDH3_k127_2173411_1 Amino acid kinase family K00926 - 2.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000004505 237.0
BYDH3_k127_2173411_2 triphosphatase activity K18446 - 3.6.1.25 0.0000000000000000000001576 107.0
BYDH3_k127_218042_0 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 317.0
BYDH3_k127_218042_1 PFAM ABC transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 316.0
BYDH3_k127_218042_2 PFAM Extracellular ligand-binding receptor - - - 0.0000000000000000000000000000000000000000000000000003238 191.0
BYDH3_k127_218042_3 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000003513 168.0
BYDH3_k127_223173_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 317.0
BYDH3_k127_223173_1 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.000000000000000000000000000000000000000000000000000000000000002003 223.0
BYDH3_k127_223173_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000004476 218.0
BYDH3_k127_223173_3 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000002802 188.0
BYDH3_k127_223173_4 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.000000000000000000000000000000003233 132.0
BYDH3_k127_223173_5 Glycosyl transferases group 1 - - - 0.0000000000004988 80.0
BYDH3_k127_2246292_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889 315.0
BYDH3_k127_2256244_0 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 415.0
BYDH3_k127_2256244_1 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000000000003558 199.0
BYDH3_k127_2256244_2 PFAM Smr protein MutS2 - - - 0.00000000000000000000000000008758 118.0
BYDH3_k127_2256918_0 Histidine kinase K07675,K09684 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 450.0
BYDH3_k127_2256918_1 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000005375 181.0
BYDH3_k127_2256918_2 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000004579 177.0
BYDH3_k127_2256918_3 PFAM Cyclic nucleotide-binding - - - 0.0000000000000000000000000000000000000000002444 168.0
BYDH3_k127_2256918_4 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.000000000000000009827 96.0
BYDH3_k127_2256918_5 helix_turn_helix, Lux Regulon - - - 0.00000462 48.0
BYDH3_k127_2276050_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 318.0
BYDH3_k127_2276050_1 Adenylate cyclase K05851 GO:0003674,GO:0003824,GO:0004016,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009975,GO:0009987,GO:0016829,GO:0016849,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046058,GO:0046390,GO:0046483,GO:0052652,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007763 289.0
BYDH3_k127_2276050_2 Domain of unknown function (DUF1956) - - - 0.0000000000000000000000000000000000000000000000000000000000002921 218.0
BYDH3_k127_2276050_3 response regulator, receiver K00384,K07315 - 1.8.1.9,3.1.3.3 0.00000000000000000000000000000000000000000000004627 186.0
BYDH3_k127_2276050_4 Protein of unknown function (DUF3124) - - - 0.000000000000000000000000000000000000000001259 162.0
BYDH3_k127_2276050_5 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.0000000000000000000000000138 112.0
BYDH3_k127_2276050_6 Protein conserved in bacteria - - - 0.0000000000000000000000002319 109.0
BYDH3_k127_2276050_7 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000003265 88.0
BYDH3_k127_2277223_0 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 GO:0000302,GO:0003674,GO:0003824,GO:0004601,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016661,GO:0016684,GO:0042221,GO:0042493,GO:0042542,GO:0046677,GO:0050418,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748 1.7.99.1 1.175e-251 787.0
BYDH3_k127_2277223_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.356e-251 810.0
BYDH3_k127_2277223_2 HlyD family secretion protein K03585 - - 0.0000000000000000000000000000000000000003415 158.0
BYDH3_k127_2277223_3 YCII-related domain K09780 - - 0.000000000000000000000000014 115.0
BYDH3_k127_2277223_4 methyltransferase activity - - - 0.00000000000000000007426 97.0
BYDH3_k127_2277223_5 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000001733 76.0
BYDH3_k127_2277223_6 PFAM OmpA domain protein transmembrane region-containing protein - - - 0.000000512 58.0
BYDH3_k127_2277223_7 Histidine kinase - - - 0.000003394 49.0
BYDH3_k127_2277223_8 - - - - 0.0001077 50.0
BYDH3_k127_2281633_0 GXGXG motif - - - 8.538e-280 878.0
BYDH3_k127_2281633_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 2.454e-258 822.0
BYDH3_k127_2281633_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002261 283.0
BYDH3_k127_2281633_3 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000004458 146.0
BYDH3_k127_2281633_4 GXGXG motif - - - 0.0000000000000000000000000000000000007646 142.0
BYDH3_k127_2281633_5 Glutamate synthase - - - 0.00000000002781 64.0
BYDH3_k127_2283865_0 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000000000000000000000006808 214.0
BYDH3_k127_2283865_1 - - - - 0.0000000000000000000000000000000000000000000000000000008252 197.0
BYDH3_k127_2283865_2 COG0183 Acetyl-CoA acetyltransferase K00626 - 2.3.1.9 0.00000003507 56.0
BYDH3_k127_231365_0 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007054 316.0
BYDH3_k127_231365_1 trisaccharide binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000195 238.0
BYDH3_k127_231917_0 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 365.0
BYDH3_k127_231917_1 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 369.0
BYDH3_k127_231917_2 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002427 273.0
BYDH3_k127_231917_3 Belongs to the selenophosphate synthase 1 family. Class I subfamily K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000003525 243.0
BYDH3_k127_231917_4 GDSL-like Lipase/Acylhydrolase family - - - 0.0001375 53.0
BYDH3_k127_2348754_0 Mannose-1-phosphate guanylyltransferase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001386 292.0
BYDH3_k127_2348754_1 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000002115 237.0
BYDH3_k127_2348754_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000008485 213.0
BYDH3_k127_2348754_3 cAMP phosphodiesterases class-II - - - 0.000000000000000000000000000000000000000001097 165.0
BYDH3_k127_2348754_4 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000000000000000000005262 140.0
BYDH3_k127_2356466_0 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 391.0
BYDH3_k127_2356466_1 Chemotaxis phosphatase CheX K03409 - - 0.000000000000000000000000000000000000000000000000000000004101 203.0
BYDH3_k127_2356466_2 Putative member of DMT superfamily (DUF486) K09922 - - 0.000000000000000000000000000000000000000000000003892 174.0
BYDH3_k127_2356466_3 Sel1 domain protein repeat-containing protein K07126 - - 0.000000000000000000000000000000000001161 144.0
BYDH3_k127_2356466_4 radical SAM domain protein - - - 0.000000008078 66.0
BYDH3_k127_2359048_0 CobQ/CobB/MinD/ParA nucleotide binding domain K08252 - 2.7.10.1 0.0000000000000000000000000000000000000000002093 168.0
BYDH3_k127_2359048_1 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000001093 141.0
BYDH3_k127_2359048_2 including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000003539 129.0
BYDH3_k127_2359048_3 SMART AAA ATPase K02450 - - 0.00005327 53.0
BYDH3_k127_2360374_0 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000003872 192.0
BYDH3_k127_2360374_1 Helix-turn-helix transcriptional regulator PuuR, cupin domain-containing - - - 0.00000000000000000000000000000000000000000000002608 175.0
BYDH3_k127_2360374_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000006566 166.0
BYDH3_k127_2360374_3 Peptidase family M48 K03799 - - 0.0000000000107 69.0
BYDH3_k127_2379328_0 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 387.0
BYDH3_k127_2379328_1 Butirosin biosynthesis protein H, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 346.0
BYDH3_k127_2379328_2 PFAM Metallo-beta-lactamase superfamily - - - 0.00000005617 56.0
BYDH3_k127_2379921_0 CoA-binding domain protein K09181 - - 1.11e-227 727.0
BYDH3_k127_2379921_1 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000002308 205.0
BYDH3_k127_2379921_2 - - - - 0.000000000000000000005293 97.0
BYDH3_k127_2379921_3 SNARE associated Golgi protein - - - 0.00007383 51.0
BYDH3_k127_2400107_0 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 512.0
BYDH3_k127_2400107_1 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000001964 192.0
BYDH3_k127_2400107_2 Endopeptidase La K04076 - 3.4.21.53 0.00000000000000000000000000000000004305 138.0
BYDH3_k127_2400107_3 Universal stress protein family - - - 0.00000000000000000000000000000002858 131.0
BYDH3_k127_2405373_0 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000819 241.0
BYDH3_k127_2405373_1 DsrE/DsrF-like family K04085 - - 0.00000000000000000000000000000000000000000000000449 181.0
BYDH3_k127_2405373_2 regulatory protein, arsR - - - 0.0000000000000000000000385 102.0
BYDH3_k127_2405373_3 Belongs to the HesB IscA family - - - 0.00000000000000004641 85.0
BYDH3_k127_2405373_4 Belongs to the HesB IscA family - - - 0.00000000000000305 77.0
BYDH3_k127_2405373_5 iron-sulfur transferase activity K04488,K15790 - - 0.000000000000094 74.0
BYDH3_k127_2406061_0 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000005419 224.0
BYDH3_k127_2406061_1 MafB19-like deaminase K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000001768 193.0
BYDH3_k127_2406061_2 Protein of unknown function (DUF890) K15460 - 2.1.1.223 0.00000000000000000000000000000000000000000000133 174.0
BYDH3_k127_2406061_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000008162 99.0
BYDH3_k127_2406061_4 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.0000000000000000000005736 105.0
BYDH3_k127_2406061_5 dUTPase K01520 - 3.6.1.23 0.00000000006415 70.0
BYDH3_k127_2406061_6 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 0.00000000273 65.0
BYDH3_k127_2416672_0 Alkyl sulfatase dimerisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007085 377.0
BYDH3_k127_2416672_1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides. Binds and recognizes a DNA motif (called the malT box) 5'-GGA TG GA-3' K03556 - - 0.00000000000000000000000000000000000000000000000000000000000001417 224.0
BYDH3_k127_2416672_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000557 53.0
BYDH3_k127_2442946_0 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 299.0
BYDH3_k127_2442946_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.0000000000000000000000000001631 122.0
BYDH3_k127_2473214_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 2.597e-210 659.0
BYDH3_k127_2473214_1 PFAM Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 297.0
BYDH3_k127_2494857_0 glutamine synthetase K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 511.0
BYDH3_k127_2494857_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000004392 132.0
BYDH3_k127_2533571_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 1.445e-295 915.0
BYDH3_k127_2533571_1 PFAM UBA THIF-type NAD FAD binding K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 304.0
BYDH3_k127_2533571_2 ThiS family - - - 0.00000000000000001074 84.0
BYDH3_k127_2563922_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000003125 222.0
BYDH3_k127_2563922_1 PFAM Type II secretion system protein E K02669 - - 0.000000000000000000000000000000000000000000000000000224 188.0
BYDH3_k127_2563922_2 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000006454 117.0
BYDH3_k127_2563922_3 TM2 domain - - - 0.00000000000000000000000001813 111.0
BYDH3_k127_2595964_0 PFAM Lytic transglycosylase catalytic K08307 - - 0.000000000000000000000000000000000000000000000000000000000000006244 236.0
BYDH3_k127_2595964_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.00000000000000000000000000000000000000000000000000000000000004578 223.0
BYDH3_k127_2595964_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000001155 181.0
BYDH3_k127_2595964_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000001669 115.0
BYDH3_k127_2595964_4 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.000000000000003999 82.0
BYDH3_k127_2637487_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 5.397e-218 689.0
BYDH3_k127_2637487_1 LeuA allosteric (dimerisation) domain K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008761 606.0
BYDH3_k127_2637487_2 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 367.0
BYDH3_k127_2637487_3 - - - - 0.00000000000000004095 85.0
BYDH3_k127_26540_0 CoA binding domain K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000003135 261.0
BYDH3_k127_26540_1 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000000000000003899 155.0
BYDH3_k127_26540_2 Mediates zinc uptake. May also transport other divalent cations K07238 - - 0.000000000000000000000004936 102.0
BYDH3_k127_26540_3 Predicted permease K07089 - - 0.0002915 49.0
BYDH3_k127_2673545_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008502 385.0
BYDH3_k127_2673545_1 Has ATPase and non-specific DNA-binding activities K07456 - - 0.00000000000000000114 87.0
BYDH3_k127_2679296_0 PFAM Band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 347.0
BYDH3_k127_2679296_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000001301 147.0
BYDH3_k127_2679296_2 It is involved in the biological process described with protein phosphorylation K07376 GO:0000302,GO:0001558,GO:0002164,GO:0003008,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004690,GO:0004692,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007525,GO:0007526,GO:0007568,GO:0007600,GO:0007606,GO:0007610,GO:0007611,GO:0007612,GO:0007631,GO:0007635,GO:0008150,GO:0008152,GO:0008286,GO:0008306,GO:0008340,GO:0008355,GO:0009605,GO:0009606,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009791,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010259,GO:0010468,GO:0010469,GO:0010646,GO:0010647,GO:0010648,GO:0010752,GO:0010753,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017015,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0022898,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030308,GO:0030431,GO:0030512,GO:0030536,GO:0030537,GO:0030545,GO:0032101,GO:0032103,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0036211,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040015,GO:0040017,GO:0042048,GO:0042056,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043271,GO:0043412,GO:0043434,GO:0043577,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045926,GO:0046620,GO:0046621,GO:0046662,GO:0046677,GO:0048018,GO:0048513,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048569,GO:0048580,GO:0048581,GO:0048583,GO:0048584,GO:0048585,GO:0048638,GO:0048640,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050848,GO:0050849,GO:0050877,GO:0050890,GO:0050896,GO:0050909,GO:0050913,GO:0050918,GO:0050920,GO:0050921,GO:0051049,GO:0051051,GO:0051093,GO:0051128,GO:0051239,GO:0051240,GO:0051241,GO:0051336,GO:0051342,GO:0051343,GO:0051345,GO:0051716,GO:0060255,GO:0060259,GO:0061061,GO:0061062,GO:0061064,GO:0061065,GO:0061067,GO:0065007,GO:0065009,GO:0070482,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0097305,GO:0098772,GO:0140096,GO:1901046,GO:1901419,GO:1901421,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902159,GO:1902160,GO:1902531,GO:1902532,GO:1902533,GO:1903844,GO:1903845,GO:1903998,GO:1905957,GO:1905959,GO:1990335,GO:1990834,GO:2000026,GO:2000241,GO:2000243 2.7.11.12 0.0000004444 61.0
BYDH3_k127_2686105_0 DHH family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003538 264.0
BYDH3_k127_2686105_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000001041 258.0
BYDH3_k127_2686105_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000004421 196.0
BYDH3_k127_2686105_3 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000001355 158.0
BYDH3_k127_2686105_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000009098 141.0
BYDH3_k127_2686105_5 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000007286 109.0
BYDH3_k127_2686105_6 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000001077 107.0
BYDH3_k127_2686105_7 Belongs to the UPF0102 family K07460 - - 0.0000000000000002554 85.0
BYDH3_k127_2688544_0 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 593.0
BYDH3_k127_2688544_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0052855,GO:0052856,GO:0052857 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 431.0
BYDH3_k127_2688544_2 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007694 325.0
BYDH3_k127_2688544_3 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 299.0
BYDH3_k127_2688544_4 TRL-like protein family - - - 0.000000000002485 71.0
BYDH3_k127_2702692_0 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003906 284.0
BYDH3_k127_2707535_0 4Fe-4S dicluster domain - - - 1.06e-278 871.0
BYDH3_k127_2707535_1 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 509.0
BYDH3_k127_2714410_0 P-loop ATPase protein family K06958 - - 0.0000000000000000000000000000000000000000000000000000000001134 210.0
BYDH3_k127_2714410_1 PTS system fructose IIA component K02793 - 2.7.1.191 0.000000000000000000000000000000000001418 142.0
BYDH3_k127_2714410_2 PFAM PTS system sorbose subfamily IIB component K02794 - 2.7.1.191 0.00000000000000000000009755 104.0
BYDH3_k127_2717117_0 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 374.0
BYDH3_k127_2717117_1 HD domain - - - 0.00000000000000000000000000007302 124.0
BYDH3_k127_2723481_0 COG3547 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003772 257.0
BYDH3_k127_2724240_0 Acetyl-CoA hydrolase transferase N-terminal domain - - - 1.864e-261 818.0
BYDH3_k127_2724240_1 PFAM ABC transporter K06158 - - 1.034e-250 787.0
BYDH3_k127_2728509_0 Type II secretion system (T2SS), protein F K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001615 261.0
BYDH3_k127_2728509_1 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003769 249.0
BYDH3_k127_2728509_2 Prokaryotic N-terminal methylation motif - - - 0.00000000000000001575 91.0
BYDH3_k127_2738088_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 366.0
BYDH3_k127_2738088_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000164 162.0
BYDH3_k127_2739479_0 Ribulose bisphosphate carboxylase large chain, catalytic domain K08965 - 5.3.2.5 0.000000000000000000000000000000000000000000000000000006138 203.0
BYDH3_k127_2739479_1 UTRA K03710 - - 0.000000000001748 73.0
BYDH3_k127_2749842_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 2.294e-295 921.0
BYDH3_k127_2749842_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009405,GO:0009408,GO:0009628,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018995,GO:0019058,GO:0019068,GO:0020003,GO:0022610,GO:0023051,GO:0023056,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033643,GO:0033644,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0035639,GO:0035821,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044174,GO:0044175,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044279,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044650,GO:0044764,GO:0046812,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0051817,GO:0052047,GO:0052212,GO:0061077,GO:0065007,GO:0065010,GO:0097159,GO:0097367,GO:0101031,GO:1901222,GO:1901224,GO:1901265,GO:1901363,GO:1902531,GO:1902533,GO:1990220,GO:2000535 - 1.074e-248 777.0
BYDH3_k127_2749842_2 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008328 422.0
BYDH3_k127_2749842_3 hydroxyacid-oxoacid transhydrogenase activity K00001,K01714 - 1.1.1.1,4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 405.0
BYDH3_k127_2749842_4 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000005614 173.0
BYDH3_k127_2749842_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000000002377 151.0
BYDH3_k127_2749842_6 PFAM Glycoside hydrolase, family 13 - - - 0.000000000000000000000000000000001029 132.0
BYDH3_k127_2749842_7 Belongs to the SlyX family K03745 - - 0.00006513 47.0
BYDH3_k127_2749842_8 EamA-like transporter family - - - 0.0001018 47.0
BYDH3_k127_2783437_0 Methyl-accepting chemotaxis protein (MCP) signalling domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006561 267.0
BYDH3_k127_2783437_1 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000001469 106.0
BYDH3_k127_2803958_0 TIGRFAM oligopeptide dipeptide ABC transporter, ATP-binding protein, C-terminal domain K02031,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 378.0
BYDH3_k127_2803958_1 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007903 350.0
BYDH3_k127_2803958_2 - - - - 0.0000000000001293 75.0
BYDH3_k127_2803958_3 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000002277 73.0
BYDH3_k127_2803958_4 DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.000008955 55.0
BYDH3_k127_2821688_0 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000388 580.0
BYDH3_k127_2833737_0 ImcF-related N-terminal domain K11891 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 464.0
BYDH3_k127_2833737_1 Type VI secretion system protein DotU K11892 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005936 259.0
BYDH3_k127_2876514_0 AAA domain, putative AbiEii toxin, Type IV TA system K09817 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008014 294.0
BYDH3_k127_2876514_1 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001557 251.0
BYDH3_k127_2876514_2 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.0000000000000000000000000000000000000002075 153.0
BYDH3_k127_2894562_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001961 244.0
BYDH3_k127_2894562_1 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000007274 141.0
BYDH3_k127_2894562_2 Putative regulatory protein - - - 0.00000000000000000000004305 101.0
BYDH3_k127_2894562_3 Inositol monophosphatase family K01082 - 3.1.3.7 0.000000000000000000002673 94.0
BYDH3_k127_2894562_4 - - - - 0.00000000002955 70.0
BYDH3_k127_2894562_5 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000004998 64.0
BYDH3_k127_2894562_6 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) - - - 0.000002746 49.0
BYDH3_k127_2894562_7 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000003059 53.0
BYDH3_k127_2896131_0 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000008525 206.0
BYDH3_k127_2896131_1 SH3 domain (SH3b1 type) - - - 0.000000000000000000000000000000000000000000001705 182.0
BYDH3_k127_2909324_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 569.0
BYDH3_k127_2909324_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 410.0
BYDH3_k127_2909324_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 343.0
BYDH3_k127_2909324_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 342.0
BYDH3_k127_2909324_4 Choline/ethanolamine kinase K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000001011 269.0
BYDH3_k127_2916309_0 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003354 273.0
BYDH3_k127_2916309_1 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) K10794 - 1.21.4.1 0.0000000000000000000000000000000000000000000000000006449 188.0
BYDH3_k127_2916309_3 Tellurite resistance protein TerB - - - 0.0000000000000001297 81.0
BYDH3_k127_2927682_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008592 303.0
BYDH3_k127_2927682_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016020,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000166 248.0
BYDH3_k127_2927682_2 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000009398 181.0
BYDH3_k127_2952835_0 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001038 282.0
BYDH3_k127_2952835_1 PFAM 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000001643 263.0
BYDH3_k127_2958284_0 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 0.0 1041.0
BYDH3_k127_2958284_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000001638 148.0
BYDH3_k127_3015758_0 spore germination - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 295.0
BYDH3_k127_3015758_1 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001199 281.0
BYDH3_k127_3015758_2 PFAM plasmid stabilization system K06218 - - 0.0000000000000000000000000000000001032 134.0
BYDH3_k127_3015758_3 - - - - 0.00000000000000002227 83.0
BYDH3_k127_3015758_4 EamA-like transporter family - - - 0.000000001356 59.0
BYDH3_k127_3015758_5 Short C-terminal domain K08982 - - 0.000000001674 62.0
BYDH3_k127_3054512_0 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 467.0
BYDH3_k127_3054512_1 diguanylate cyclase K13590 - 2.7.7.65 0.000000000000000000000000000000000000007104 154.0
BYDH3_k127_3059397_0 PFAM sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000000000000000000000007297 166.0
BYDH3_k127_3059397_1 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000614 149.0
BYDH3_k127_3059397_2 Heavy-metal resistance - - - 0.000000001545 65.0
BYDH3_k127_3071206_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006175 262.0
BYDH3_k127_3071206_1 menaquinone-dependent protoporphyrinogen oxidase activity K00230 - 1.3.5.3 0.000000000000000000000000001301 121.0
BYDH3_k127_3071206_2 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000003394 107.0
BYDH3_k127_309095_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1125.0
BYDH3_k127_309095_1 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 452.0
BYDH3_k127_309095_2 Transporter associated domain K03699 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 390.0
BYDH3_k127_309095_3 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000307 337.0
BYDH3_k127_309095_4 PFAM MOSC domain - - - 0.000000000000000000000000000000000000000000000000001187 186.0
BYDH3_k127_309095_5 - - - - 0.00000000000000000000000000000000000000000000003324 186.0
BYDH3_k127_309095_6 Transcriptional regulator K05799 - - 0.00000000000000000000000000000000001549 146.0
BYDH3_k127_309095_7 Methyltransferase, type 11 - - - 0.000000000000000000000000000004779 120.0
BYDH3_k127_309095_9 Transporter associated domain - - - 0.0000000000000000000000003685 106.0
BYDH3_k127_3112399_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009669 270.0
BYDH3_k127_3112399_1 PFAM Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000003487 175.0
BYDH3_k127_3112399_2 - - - - 0.000000000000000000000000000000000000000000009618 175.0
BYDH3_k127_3112399_3 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16785 - - 0.00000000000000000000000000000000000000000001638 170.0
BYDH3_k127_3112399_4 Sel1 domain protein repeat-containing protein K07126 - - 0.0000000000000000000000000000000000000001582 160.0
BYDH3_k127_3115611_0 COG2801 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 423.0
BYDH3_k127_3115611_1 - - - - 0.000000002365 59.0
BYDH3_k127_3119962_0 Putative citrate transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 411.0
BYDH3_k127_3119962_1 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000001491 147.0
BYDH3_k127_3123813_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 7.615e-216 690.0
BYDH3_k127_3123813_1 Methylene-tetrahydrofolate reductase C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005587 263.0
BYDH3_k127_3123813_2 PFAM methyl-viologen-reducing hydrogenase delta subunit - - - 0.00000000000000000000000000000000000000000000000001382 184.0
BYDH3_k127_3123813_3 PFAM Pyridine nucleotide-disulphide oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000379 96.0
BYDH3_k127_3144228_0 PFAM Cytochrome c assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 295.0
BYDH3_k127_3144228_1 PFAM ResB family protein K07399 - - 0.000000000000000000000000000000000000000000000000000391 195.0
BYDH3_k127_3162851_0 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 293.0
BYDH3_k127_3162851_1 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000001527 117.0
BYDH3_k127_3162851_3 endonuclease containing a URI domain K07461 - - 0.00000000000000001918 85.0
BYDH3_k127_3179164_0 Transcriptional regulator K03717 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 349.0
BYDH3_k127_3179164_1 phosphate ion binding K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000001259 236.0
BYDH3_k127_3179164_2 Zinc-uptake complex component A periplasmic K09815 - - 0.00000000000000000000000000000000000000000000121 169.0
BYDH3_k127_3179164_3 - - - - 0.00000000000000000000007678 100.0
BYDH3_k127_3205166_0 galactose-1-phosphate uridylyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001118 245.0
BYDH3_k127_3205166_1 Inverse autotransporter, beta-domain - - - 0.000003496 57.0
BYDH3_k127_3247591_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 474.0
BYDH3_k127_3247591_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 376.0
BYDH3_k127_3251652_0 Protein of unknown function (DUF1573) - - - 0.00000000008665 66.0
BYDH3_k127_3251652_1 DnaJ molecular chaperone homology domain - - - 0.00002039 56.0
BYDH3_k127_3254256_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.124e-218 686.0
BYDH3_k127_3254256_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000003972 189.0
BYDH3_k127_3255270_0 drug transmembrane transporter activity K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 486.0
BYDH3_k127_3255270_1 PFAM nitrogen-fixing NifU domain protein - - - 0.0000000000000000000001827 99.0
BYDH3_k127_3282797_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 394.0
BYDH3_k127_3282797_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 302.0
BYDH3_k127_3282797_2 amino acid-binding ACT domain protein K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 293.0
BYDH3_k127_3282797_3 Probable RNA and SrmB- binding site of polymerase A K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007648 279.0
BYDH3_k127_3282797_4 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000001415 196.0
BYDH3_k127_3282797_5 Prephenate dehydrogenase K00210,K04517 - 1.3.1.12 0.000000000000000000000000000000000000000003864 162.0
BYDH3_k127_3282797_6 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000002695 69.0
BYDH3_k127_3282797_7 prephenate dehydrogenase K15226 - 1.3.1.78 0.00000000001785 68.0
BYDH3_k127_3282797_8 transcriptional regulator, TetR family - - - 0.0000000001234 66.0
BYDH3_k127_3304771_0 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 451.0
BYDH3_k127_3304771_1 PFAM UMUC domain protein DNA-repair protein K02346,K03502 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 362.0
BYDH3_k127_3304771_2 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000008932 175.0
BYDH3_k127_3304771_3 Belongs to the peptidase S24 family K03503 - - 0.0000000000000000000000000000000000000000001107 164.0
BYDH3_k127_3304771_4 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.0000000000000000000000002591 107.0
BYDH3_k127_3304771_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000001163 84.0
BYDH3_k127_3304771_6 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00004872 46.0
BYDH3_k127_3312810_0 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000004871 235.0
BYDH3_k127_3312810_1 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000009009 186.0
BYDH3_k127_3312810_2 PFAM ATP-binding region ATPase domain protein - - - 0.000000000000000000000000002444 129.0
BYDH3_k127_3312810_3 Iron-containing alcohol dehydrogenase - - - 0.000000001809 63.0
BYDH3_k127_3312810_4 SCP-2 sterol transfer family - - - 0.0003982 46.0
BYDH3_k127_3333403_0 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000011 192.0
BYDH3_k127_3333403_1 META domain K03929 - - 0.000000000000000005388 93.0
BYDH3_k127_333883_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 538.0
BYDH3_k127_333883_1 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000002909 260.0
BYDH3_k127_333883_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000003947 87.0
BYDH3_k127_333883_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000004677 87.0
BYDH3_k127_3341444_0 Asparagine synthase K01953 - 6.3.5.4 2.919e-253 795.0
BYDH3_k127_3341444_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000006305 239.0
BYDH3_k127_3341444_2 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000000000005365 91.0
BYDH3_k127_3341444_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000128 87.0
BYDH3_k127_3345923_0 tRNA processing K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 421.0
BYDH3_k127_3345923_1 Histidine biosynthesis protein K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 297.0
BYDH3_k127_3345923_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000005951 175.0
BYDH3_k127_3355167_0 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 455.0
BYDH3_k127_3355167_1 Belongs to the DegT DnrJ EryC1 family K18653 GO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009987,GO:0016740,GO:0016769,GO:0016999,GO:0017000,GO:0017144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 289.0
BYDH3_k127_3355167_2 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000001768 133.0
BYDH3_k127_3398301_0 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 308.0
BYDH3_k127_3398301_1 Carbon-nitrogen hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000002729 227.0
BYDH3_k127_3398301_2 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000003119 200.0
BYDH3_k127_3398301_3 Nucleoside 2-deoxyribosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000003947 202.0
BYDH3_k127_3399593_0 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 457.0
BYDH3_k127_3399593_1 Domain of Unknown Function (DUF748) - - - 0.000000000000000002002 89.0
BYDH3_k127_34029_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 4.933e-245 762.0
BYDH3_k127_34029_1 lysine 2,3-aminomutase activity K01843,K19810 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 514.0
BYDH3_k127_34029_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000895 376.0
BYDH3_k127_34029_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002912 284.0
BYDH3_k127_34029_4 ATP-grasp domain K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000003366 247.0
BYDH3_k127_34029_5 acetyltransferase K18815 - 2.3.1.82 0.000000000000000000000000000000000000000000000001702 182.0
BYDH3_k127_34029_6 ATP-grasp domain K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000002876 167.0
BYDH3_k127_34029_7 ABC transporter K02003 - - 0.000000000000000000000000000000001205 131.0
BYDH3_k127_3435899_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 301.0
BYDH3_k127_3435899_1 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003002 262.0
BYDH3_k127_3435899_2 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000002188 113.0
BYDH3_k127_3435899_3 VirC1 protein - - - 0.000000001271 66.0
BYDH3_k127_3465772_0 Major Facilitator Superfamily K08177 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 563.0
BYDH3_k127_3465772_1 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 302.0
BYDH3_k127_3465772_2 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000000009387 231.0
BYDH3_k127_3465772_3 Appr-1'-p processing enzyme - - - 0.00000000000000000000000000000000000000000000000000002611 193.0
BYDH3_k127_3465772_4 Belongs to the KdsB family K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000275 190.0
BYDH3_k127_3465772_5 MoaE protein K03635 - 2.8.1.12 0.00000000000000000000000000000000001504 138.0
BYDH3_k127_3465772_6 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus K04760 GO:0006139,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031437,GO:0031439,GO:0032774,GO:0032784,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903311,GO:1903313,GO:1903506,GO:2000112,GO:2001141 - 0.000006704 49.0
BYDH3_k127_3506435_0 CGGC - - - 0.00000000000000000000000000000000000000000000000000000000000000001781 226.0
BYDH3_k127_3506435_1 Uncharacterised protein family UPF0066 - - - 0.000000000000000000000000000000000000000000000000000000000008296 214.0
BYDH3_k127_3506435_2 Dinitrogenase iron-molybdenum cofactor - - - 0.00000000000000000000000000000000000000000004496 163.0
BYDH3_k127_3506435_3 Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000002293 91.0
BYDH3_k127_3506435_4 Family of unknown function (DUF5320) - - - 0.00000000000000002221 87.0
BYDH3_k127_3541212_0 Type VI secretion system, TssF K11896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 608.0
BYDH3_k127_3541212_1 Gene 25-like lysozyme K11897 - - 0.0000000000000000000000000000000002116 138.0
BYDH3_k127_3541212_2 Type VI secretion system effector, Hcp K11903 - - 0.00000000000000000000000000002035 119.0
BYDH3_k127_3541212_3 Type VI secretion system effector, Hcp K11903 - - 0.00000000000002548 73.0
BYDH3_k127_3544287_0 pyruvate phosphate dikinase - - - 7.386e-242 762.0
BYDH3_k127_3544287_1 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000000000009543 84.0
BYDH3_k127_3557364_0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 - - - 0.000000000000000000000000000000000000000000000005313 180.0
BYDH3_k127_3557364_1 - - - - 0.00000000000000000000000000000000000002225 152.0
BYDH3_k127_3557364_2 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE K11893 - - 0.00000000007315 63.0
BYDH3_k127_3558711_0 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001103 293.0
BYDH3_k127_3558711_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000001727 216.0
BYDH3_k127_3558711_2 outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000008251 162.0
BYDH3_k127_3558711_3 serine threonine protein kinase - - - 0.00000000000003146 81.0
BYDH3_k127_3558711_4 Bacterial regulatory proteins, tetR family - - - 0.0000000000002848 78.0
BYDH3_k127_3566682_0 PFAM Acetyl-CoA hydrolase transferase K18122 - - 2.662e-208 654.0
BYDH3_k127_3566682_1 Aminotransferase class-III K00823,K07250 - 2.6.1.19,2.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 551.0
BYDH3_k127_3566682_2 PFAM Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 483.0
BYDH3_k127_3566682_3 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 359.0
BYDH3_k127_3581005_0 Glutamine amidotransferase domain K00764 - 2.4.2.14 2.1e-213 671.0
BYDH3_k127_3581005_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 571.0
BYDH3_k127_3581747_0 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000008856 207.0
BYDH3_k127_3581747_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000006941 95.0
BYDH3_k127_3581747_2 Tetratricopeptide repeat - - - 0.0000003788 63.0
BYDH3_k127_3585026_0 Domain of unknown function (DUF3552) K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 574.0
BYDH3_k127_3585026_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.1 0.000000000000000000000000000000000000000000645 162.0
BYDH3_k127_3585026_2 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000001248 83.0
BYDH3_k127_3585796_0 class II (D K and N) K01893 - 6.1.1.22 0.000000000000000000000000000000000000000000000000001198 189.0
BYDH3_k127_3585796_1 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000004207 133.0
BYDH3_k127_3585796_2 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.00000000000000000001161 96.0
BYDH3_k127_3585796_3 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.00000000000007318 81.0
BYDH3_k127_3598968_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 3.106e-246 773.0
BYDH3_k127_3598968_1 transport system, periplasmic component K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 316.0
BYDH3_k127_3598968_2 KH domain K06960 - - 0.00000000000000000000000000000003317 126.0
BYDH3_k127_3598968_3 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000001211 96.0
BYDH3_k127_3604220_0 Belongs to the thiolase family K07550 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 406.0
BYDH3_k127_3604220_1 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 390.0
BYDH3_k127_3604220_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 366.0
BYDH3_k127_3604220_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000003734 199.0
BYDH3_k127_3650811_0 Proton-conducting membrane transporter K05568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 456.0
BYDH3_k127_3650811_1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K05567 - - 0.000000000000000000000000000000000000004636 149.0
BYDH3_k127_3650811_2 Domain related to MnhB subunit of Na+/H+ antiporter K05566 - - 0.0000000000000000000000000000000000005639 146.0
BYDH3_k127_3650811_3 Proton-conducting membrane transporter K05568 - - 0.0000000000000000000000000003133 120.0
BYDH3_k127_3650811_4 Domain of unknown function (DUF4040) K05566 - - 0.00000000000000000000006164 101.0
BYDH3_k127_3662058_0 Electron transfer flavoprotein, alpha subunit K03522,K22432 - 1.3.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007758 472.0
BYDH3_k127_3662058_1 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000009565 130.0
BYDH3_k127_3668795_0 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000003071 223.0
BYDH3_k127_3668795_4 PFAM formate C-acetyltransferase glycine radical K00656,K07540 - 2.3.1.54,4.1.99.11 0.000000000000000000000002036 102.0
BYDH3_k127_3679442_0 DNA polymerase K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008128 410.0
BYDH3_k127_3679442_1 ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16786,K16787 - - 0.000000000000000000000000000000000000000000000000002732 193.0
BYDH3_k127_3679442_2 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000000000006038 167.0
BYDH3_k127_3679442_3 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000004765 164.0
BYDH3_k127_3679442_4 Contains one ATP-binding region, ATPase-like domain (IPR003594) - - - 0.0000000000347 71.0
BYDH3_k127_368470_0 Belongs to the glycosyl hydrolase family 6 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 360.0
BYDH3_k127_368470_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 309.0
BYDH3_k127_368470_2 nucleic acid binding OB-fold tRNA helicase-type K03698 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006362 266.0
BYDH3_k127_368470_3 Sir2 family K12410 - - 0.000000000000000000000000000000000000000000000000000000000000008835 224.0
BYDH3_k127_368470_4 PFAM Fibronectin, type III domain - - - 0.0000000000000000009413 100.0
BYDH3_k127_3728057_0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045 477.0
BYDH3_k127_3728057_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 332.0
BYDH3_k127_3728057_2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000001226 239.0
BYDH3_k127_3728057_3 Dihydrouridine synthase (Dus) - - - 0.0000000000000000000000000000000000000000000000000000000000000008093 231.0
BYDH3_k127_3728057_4 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000004545 226.0
BYDH3_k127_3728057_5 queuosine metabolic process K04068,K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 1.97.1.4,4.3.99.3 0.00000000000000000000000000000000000000000000000000000000455 205.0
BYDH3_k127_3728057_6 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000001142 78.0
BYDH3_k127_3728694_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1212.0
BYDH3_k127_3728694_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000002251 59.0
BYDH3_k127_3738957_0 PFAM Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 351.0
BYDH3_k127_3738957_1 PFAM Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006566 271.0
BYDH3_k127_3738957_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000002534 178.0
BYDH3_k127_3740025_0 Large family of predicted nucleotide-binding domains - GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007736 306.0
BYDH3_k127_3740025_1 CarD-like/TRCF domain K07736 - - 0.000000000000000000000000000000000000000000000004758 177.0
BYDH3_k127_3740025_2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991,K21030 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.40,2.7.7.60 0.0002839 44.0
BYDH3_k127_378947_0 Biotin and Thiamin Synthesis associated K03150 - 4.1.99.19 4.661e-210 659.0
BYDH3_k127_378947_1 Iron hydrogenase small subunit K00336,K18332 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 534.0
BYDH3_k127_378947_2 iron-only hydrogenase system regulator - - - 0.0000000000000000000000006407 107.0
BYDH3_k127_3790079_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789,K18138 - - 1.582e-255 803.0
BYDH3_k127_3790079_1 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 436.0
BYDH3_k127_3790079_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 364.0
BYDH3_k127_3790079_3 Biotin-lipoyl like K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 331.0
BYDH3_k127_3790079_4 Acetyltransferase (GNAT) family - - - 0.000000000000000006609 86.0
BYDH3_k127_379524_0 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 533.0
BYDH3_k127_379524_1 AsmA-like C-terminal region - - - 0.000000000000000000000000000000000000001985 170.0
BYDH3_k127_379524_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000007857 140.0
BYDH3_k127_3817282_0 Glycosyl hydrolase family 3 K05349 - 3.2.1.21 9.693e-241 754.0
BYDH3_k127_3817282_1 Glycoside Hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 306.0
BYDH3_k127_3837042_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 591.0
BYDH3_k127_3837042_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 321.0
BYDH3_k127_3837042_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000007372 239.0
BYDH3_k127_3837042_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000004531 214.0
BYDH3_k127_3837042_4 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000001414 178.0
BYDH3_k127_3837042_5 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000005791 99.0
BYDH3_k127_3873617_0 Protein of unknown function (DUF1298) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 388.0
BYDH3_k127_3873617_1 pfam abc-1 K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002887 267.0
BYDH3_k127_3873617_2 PFAM alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001646 259.0
BYDH3_k127_3873617_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000006458 213.0
BYDH3_k127_3873617_4 PFAM poly granule associated family protein - - - 0.00000000007262 69.0
BYDH3_k127_3873617_5 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.000002613 56.0
BYDH3_k127_3883060_0 ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000146 181.0
BYDH3_k127_3883060_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000002195 157.0
BYDH3_k127_3891277_0 Carboxyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 314.0
BYDH3_k127_3891277_1 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000008506 200.0
BYDH3_k127_3891277_2 radical SAM domain protein - - - 0.0000000000000000000000000000005257 129.0
BYDH3_k127_390612_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1550.0
BYDH3_k127_390612_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 4.599e-285 897.0
BYDH3_k127_390612_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001439 280.0
BYDH3_k127_390612_3 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.0000000000000000001435 88.0
BYDH3_k127_3970683_0 peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 371.0
BYDH3_k127_3970683_1 OstA-like protein - - - 0.000005019 51.0
BYDH3_k127_3982713_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 431.0
BYDH3_k127_3982713_1 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000004705 104.0
BYDH3_k127_3982713_2 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000001974 58.0
BYDH3_k127_4004923_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769 2.6.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 361.0
BYDH3_k127_4004923_1 PFAM ABC transporter related K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009683 359.0
BYDH3_k127_4004923_2 belongs to the bacterial solute-binding protein 3 family K02030 - - 0.00000000001941 66.0
BYDH3_k127_4012795_0 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007446 508.0
BYDH3_k127_4012795_1 Saccharopine dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001801 251.0
BYDH3_k127_4016381_0 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000001595 199.0
BYDH3_k127_4016381_1 at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA) K04751 - - 0.00000000000000000000000000000000000000000000000006834 180.0
BYDH3_k127_4016381_2 TGS domain K06944 - - 0.00000000000000000000000000000000000000000002586 163.0
BYDH3_k127_4027433_0 surface antigen variable number repeat protein K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 362.0
BYDH3_k127_4027433_1 - - - - 0.0000000000000000000000000000000000004575 144.0
BYDH3_k127_4029443_0 PFAM ATP-binding region - - - 0.00000000000000000000000000000000000000000000000000000000001004 225.0
BYDH3_k127_407075_0 DNA polymerase III subunits gamma and tau domain III K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009425 373.0
BYDH3_k127_407075_1 PFAM Peptidase family S58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000005587 242.0
BYDH3_k127_407075_2 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000000000000000000000000000000000000000000001624 183.0
BYDH3_k127_407075_3 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000004865 137.0
BYDH3_k127_4090847_0 HIT family hydrolase K02503 - - 0.0000000000000000000000000000000000000000000000000004171 186.0
BYDH3_k127_4090847_1 ComF family K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000005894 175.0
BYDH3_k127_4090847_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000005973 57.0
BYDH3_k127_4105115_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 479.0
BYDH3_k127_4105115_1 SMART Nucleotide binding protein, PINc K07175 - - 0.00000000000000000000000000000002191 126.0
BYDH3_k127_4111229_0 B12 binding domain - - - 6.238e-223 703.0
BYDH3_k127_4111229_1 Protein of unknown function (DUF975) - - - 0.00000000000000000000000000000000000000000757 164.0
BYDH3_k127_4111229_2 Transcriptional regulator, TetR family - - - 0.000000008726 57.0
BYDH3_k127_4111229_3 Enoyl-CoA hydratase K01692 - 4.2.1.17 0.0003164 47.0
BYDH3_k127_4117660_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 9e-323 1022.0
BYDH3_k127_4117660_1 Cysteine-rich domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 449.0
BYDH3_k127_4163832_0 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000009153 149.0
BYDH3_k127_416855_0 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 410.0
BYDH3_k127_416855_1 methyltransferase K00641 - 2.3.1.31 0.0000000000000000000000000000000000000004568 156.0
BYDH3_k127_416855_2 Response regulator receiver - - - 0.0002483 50.0
BYDH3_k127_4176503_0 ABC-2 family transporter protein K13926 - - 2.83e-311 981.0
BYDH3_k127_4176503_1 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009322 397.0
BYDH3_k127_4176503_2 ABC-type multidrug transport system, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 352.0
BYDH3_k127_4176503_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002519 259.0
BYDH3_k127_4176503_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000007923 180.0
BYDH3_k127_4176503_5 transcriptional regulator K09017 - - 0.000000000000000000000000000000000007831 143.0
BYDH3_k127_4176503_6 transcriptional regulator, TetR family - - - 0.00000000006319 66.0
BYDH3_k127_4187874_0 acetyl-coa acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 451.0
BYDH3_k127_4187874_1 Alpha/beta hydrolase family K01563 - 3.8.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000004007 249.0
BYDH3_k127_4187874_2 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.000000000000000000000000000000000000000000000002106 176.0
BYDH3_k127_4202737_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 398.0
BYDH3_k127_4202737_1 TIGRFAM TraB family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 354.0
BYDH3_k127_4202737_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 320.0
BYDH3_k127_4202737_3 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005114 278.0
BYDH3_k127_4202737_4 PFAM CBS domain containing protein K06189 - - 0.000000000000000000000000000000000000000000000000000000000002377 218.0
BYDH3_k127_4202737_5 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000000003797 175.0
BYDH3_k127_4202737_6 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0019897,GO:0019898,GO:0030145,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.54 0.0000000000000000002989 100.0
BYDH3_k127_4202737_7 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00003538 47.0
BYDH3_k127_4203250_0 serine protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002966 394.0
BYDH3_k127_4203250_1 RNA-metabolising metallo-beta-lactamase K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 293.0
BYDH3_k127_4203250_2 PFAM Peptidase C1A, papain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002118 305.0
BYDH3_k127_421504_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00008904 55.0
BYDH3_k127_4219357_0 Type VI secretion, TssG K11895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 366.0
BYDH3_k127_4219357_1 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.00000000000000000000000000000000000000000000000002885 181.0
BYDH3_k127_4219357_2 Type VI secretion system, TssF K11896 - - 0.00000004563 59.0
BYDH3_k127_4242206_0 Sugar (and other) transporter K03446 - - 7.263e-194 618.0
BYDH3_k127_4242206_1 HlyD membrane-fusion protein of T1SS K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000001439 231.0
BYDH3_k127_4244244_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 549.0
BYDH3_k127_4244244_1 PFAM regulatory protein ArsR K03892 - - 0.00000000000000002037 86.0
BYDH3_k127_4254846_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006484 353.0
BYDH3_k127_4254846_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000001953 242.0
BYDH3_k127_4254846_2 fibronectin type III domain protein - - - 0.0000000000000000000000000000001016 134.0
BYDH3_k127_4254846_3 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.0000004958 55.0
BYDH3_k127_4264126_0 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 445.0
BYDH3_k127_4264126_1 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007698 349.0
BYDH3_k127_4282627_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008158 308.0
BYDH3_k127_4282627_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 - 1.1.1.27,1.1.1.37 0.00000000000000000000000000000000002796 138.0
BYDH3_k127_4282627_2 Belongs to the UPF0307 family K09889 - - 0.000000001674 62.0
BYDH3_k127_4304391_0 NADH dehydrogenase K00335,K18331 - 1.12.1.3,1.6.5.3 8.933e-220 691.0
BYDH3_k127_4304391_1 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000024 190.0
BYDH3_k127_4304391_2 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 0.00000000000000000000000000000000000000000000003427 172.0
BYDH3_k127_4304391_3 Ferredoxin K17992 - 1.12.1.3 0.0000000000000000000000000000000000001971 144.0
BYDH3_k127_4317554_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 591.0
BYDH3_k127_4317554_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006065 281.0
BYDH3_k127_4330437_0 Alpha/beta hydrolase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 383.0
BYDH3_k127_4330437_1 TIGRFAM RarD protein, DMT superfamily transporter K05786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 345.0
BYDH3_k127_4330437_2 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.000000000000000000000000000000000000000000000000007681 191.0
BYDH3_k127_4330437_3 Hemerythrin HHE cation binding domain protein - - - 0.000000000000000000000000000000000006937 140.0
BYDH3_k127_4330437_4 regulation of RNA biosynthetic process K03567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000005764 85.0
BYDH3_k127_4359488_0 ABC-type uncharacterized transport system - - - 2.091e-219 702.0
BYDH3_k127_4359488_1 alcohol dehydrogenase K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 483.0
BYDH3_k127_4359488_2 PFAM ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 390.0
BYDH3_k127_4359488_3 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008002 318.0
BYDH3_k127_4359488_4 Protein of unknown function (DUF3795) - - - 0.0000000000000000000000000000000000000000000000000000000004924 205.0
BYDH3_k127_4359488_5 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000005755 163.0
BYDH3_k127_4359488_6 - - - - 0.0000000000000000000000000001575 124.0
BYDH3_k127_4376216_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000005038 255.0
BYDH3_k127_4376216_1 YGGT family K02221 - - 0.00000000000000000000000000000001488 128.0
BYDH3_k127_4376216_2 DUF167 - - - 0.0000000000001761 74.0
BYDH3_k127_4376216_3 TIGRFAM DivIVA domain K04074 - - 0.0000001453 59.0
BYDH3_k127_4382513_0 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 313.0
BYDH3_k127_4382513_1 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 310.0
BYDH3_k127_4382513_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000317 205.0
BYDH3_k127_4382513_3 CO dehydrogenase/acetyl-CoA synthase complex beta subunit - - - 0.0000000000000000000000000000000000000000000007454 173.0
BYDH3_k127_4382513_4 Cellulose biosynthesis protein BcsQ K07321 - - 0.000000000000000000000000000006098 122.0
BYDH3_k127_4415130_0 PFAM Phosphoglycerate mutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 456.0
BYDH3_k127_4415130_1 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001568 282.0
BYDH3_k127_4415130_2 PFAM RES domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001346 263.0
BYDH3_k127_4415130_3 Cysteine-rich domain - - - 0.000000000002722 73.0
BYDH3_k127_4415130_4 Outer membrane protease K08566 - 3.4.23.48 0.00000007713 60.0
BYDH3_k127_4415130_5 - - - - 0.000002602 49.0
BYDH3_k127_4444277_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 451.0
BYDH3_k127_4444277_1 Divergent polysaccharide deacetylase K09798 - - 0.000000000000000000000000000000000000000000000000000001201 203.0
BYDH3_k127_4444277_2 Transcription termination factor nusG - - - 0.000000000000001298 83.0
BYDH3_k127_4449869_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 596.0
BYDH3_k127_4449869_1 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000009695 227.0
BYDH3_k127_4449869_2 ECF-type riboflavin transporter, S component - - - 0.00000000000000000000000000000000000000005534 156.0
BYDH3_k127_4449869_3 Sterol carrier protein - - - 0.00000000000000000000000000000000001304 139.0
BYDH3_k127_4449869_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000002843 143.0
BYDH3_k127_4449869_5 Aconitase family (aconitate hydratase) K01681 - 4.2.1.3 0.0000000000000000000000000000000002208 136.0
BYDH3_k127_4449986_0 Periplasmic binding protein K07121 - - 0.0000000000000000000000000000000000000001334 169.0
BYDH3_k127_4449986_1 Tetratricopeptide repeat K05807 - - 0.0000000000000000000000000000003652 130.0
BYDH3_k127_4449986_2 elongation factor SelB, winged helix K03833 - - 0.000000000003663 67.0
BYDH3_k127_4449986_3 Protein of unknown function (FYDLN_acid) - - - 0.00000000001579 68.0
BYDH3_k127_4449986_4 PFAM Colicin V production protein K03558 - - 0.00000001734 63.0
BYDH3_k127_4449986_5 - - - - 0.00004552 50.0
BYDH3_k127_4449986_6 Elongation factor SelB, winged helix K03833 - - 0.00012 49.0
BYDH3_k127_4462550_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 294.0
BYDH3_k127_4462550_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0003674,GO:0003824,GO:0004735,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0017144,GO:0018130,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0055129,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000004002 229.0
BYDH3_k127_4462550_2 DNA polymerase alpha chain like domain - - - 0.0000000001309 65.0
BYDH3_k127_4462550_3 PFAM Tetratricopeptide - - - 0.000002709 52.0
BYDH3_k127_4474284_0 Anion-transporting ATPase K07321 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006552 265.0
BYDH3_k127_4474284_1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit - - - 0.00000000000000000000000000000000000000000000000000000001332 207.0
BYDH3_k127_4474284_2 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.000000000000000000000002352 104.0
BYDH3_k127_4488470_0 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000000000003981 223.0
BYDH3_k127_4488470_1 PFAM phospholipase Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000004837 229.0
BYDH3_k127_4488470_2 GlutRNAGln amidotransferase subunit D K01424 - 3.5.1.1 0.0000000000000000000000000000000000000000000000000000000009266 205.0
BYDH3_k127_4501346_0 Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006232 609.0
BYDH3_k127_4501346_1 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 417.0
BYDH3_k127_4501346_2 - K01822 - 5.3.3.1 0.00000000000000000000009225 105.0
BYDH3_k127_4521606_0 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 6.611e-209 656.0
BYDH3_k127_4521606_1 PFAM helix-turn-helix HxlR type - - - 0.000000000000000000000000000000000000000000000002361 178.0
BYDH3_k127_4521606_2 binding domain protein - - - 0.000000000000000000000000000006384 121.0
BYDH3_k127_4554897_0 Phosphorylase superfamily K00757 - 2.4.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007596 314.0
BYDH3_k127_4554897_1 Sir2 family K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 313.0
BYDH3_k127_4559222_0 PAS PAC sensor signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005175 282.0
BYDH3_k127_4567476_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000378 462.0
BYDH3_k127_4567476_1 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 312.0
BYDH3_k127_4567476_2 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000000000000000000000000002371 197.0
BYDH3_k127_4623587_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002487 257.0
BYDH3_k127_4623587_1 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000005191 224.0
BYDH3_k127_4623587_2 Acyl-CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000000000000000000000236 204.0
BYDH3_k127_4623587_3 - - - - 0.0000000000000000000000000000000000000000000000000000002621 203.0
BYDH3_k127_46409_0 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000002749 254.0
BYDH3_k127_46409_1 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000004281 239.0
BYDH3_k127_46409_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000002182 108.0
BYDH3_k127_4644776_0 response regulator K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005857 452.0
BYDH3_k127_4644776_1 metalloendopeptidase activity K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 344.0
BYDH3_k127_4644776_2 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000009423 218.0
BYDH3_k127_4644776_3 Transcription factor zinc-finger K09981 - - 0.000000000000000000035 95.0
BYDH3_k127_4644776_4 cheY-homologous receiver domain - - - 0.000000000000000005059 90.0
BYDH3_k127_4653587_0 Belongs to the flagella basal body rod proteins family K02392 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 322.0
BYDH3_k127_4653587_1 basal body rod protein K02391,K02392 - - 0.0000000000000000000000000000000000000001883 159.0
BYDH3_k127_4653587_2 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.00000001457 65.0
BYDH3_k127_4658578_0 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 384.0
BYDH3_k127_4658578_1 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000003805 124.0
BYDH3_k127_4663904_0 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009555 379.0
BYDH3_k127_4663904_1 Cobalt transport protein K02008 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005643 292.0
BYDH3_k127_4663904_2 Cobalamin (Vitamin B12) biosynthesis CbiM protein K02007 - - 0.000000000000000000000000000000000000007812 149.0
BYDH3_k127_4673895_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000544 400.0
BYDH3_k127_4673895_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein - - - 0.00000000000004821 72.0
BYDH3_k127_4708013_0 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 377.0
BYDH3_k127_4708013_1 MaoC like domain - - - 0.000000000000000000000000000000000000000001446 160.0
BYDH3_k127_4708013_2 N-terminal half of MaoC dehydratase - - - 0.000000000002317 70.0
BYDH3_k127_4732860_0 G-rich domain on putative tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 409.0
BYDH3_k127_4732860_1 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 346.0
BYDH3_k127_4732860_2 - - - - 0.0000001466 53.0
BYDH3_k127_4740389_0 TOBE domain K02052,K11072 - 3.6.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 435.0
BYDH3_k127_4740389_1 Binding-protein-dependent transport system inner membrane component K11070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 338.0
BYDH3_k127_4740389_2 Binding-protein-dependent transport system inner membrane component K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006224 290.0
BYDH3_k127_4758277_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009887 459.0
BYDH3_k127_4767288_0 Ferrous iron transport protein B - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 425.0
BYDH3_k127_4767288_1 Aspartate ammonia-lyase K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000001943 183.0
BYDH3_k127_4769416_0 Asparagine synthase K01953 - 6.3.5.4 3.715e-194 622.0
BYDH3_k127_4783149_0 Outer membrane lipoprotein-sorting protein K07003 - - 0.0000000000000000000000000000000000000000002276 168.0
BYDH3_k127_4783149_1 - - - - 0.00005674 51.0
BYDH3_k127_4804318_0 AhpC/TSA family K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002691 274.0
BYDH3_k127_4804318_1 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748 1.11.1.21 0.00000000000000000000000000000000000000000000000000001574 190.0
BYDH3_k127_4804318_2 Belongs to the Fur family K09825 - - 0.0000000000000000000000000000000000000000000000000001299 190.0
BYDH3_k127_4804318_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000001951 122.0
BYDH3_k127_4828083_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 574.0
BYDH3_k127_4864779_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000001451 152.0
BYDH3_k127_4864779_1 Response regulator, receiver - - - 0.0000000000000000000004199 108.0
BYDH3_k127_4864779_2 Belongs to the 5'-nucleotidase family - - - 0.00000004287 59.0
BYDH3_k127_4901365_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 9.309e-251 782.0
BYDH3_k127_4917276_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 490.0
BYDH3_k127_4925801_0 Pas domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001162 304.0
BYDH3_k127_4942194_0 PFAM ABC transporter K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000001679 210.0
BYDH3_k127_4942194_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000004375 215.0
BYDH3_k127_4942194_2 Iron ABC transporter, substrate-binding protein K02016 - - 0.00000000000000000000000003724 119.0
BYDH3_k127_4980935_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 1.229e-221 701.0
BYDH3_k127_4980935_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 559.0
BYDH3_k127_4980935_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000001503 59.0
BYDH3_k127_4988460_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 2.328e-249 779.0
BYDH3_k127_4990826_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006424 433.0
BYDH3_k127_4990826_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009504 419.0
BYDH3_k127_4990826_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006109 284.0
BYDH3_k127_4990826_3 Uncharacterised protein family UPF0066 - - - 0.0000000000000000000000000001875 118.0
BYDH3_k127_5024503_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 3.164e-219 689.0
BYDH3_k127_5024503_1 oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008493 362.0
BYDH3_k127_5024503_2 Protein of unknown function (DUF3015) - - - 0.00000000000000000000000000000000000000001093 159.0
BYDH3_k127_5024503_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000004296 146.0
BYDH3_k127_5024503_4 PFAM DRTGG domain - - - 0.000000000000000000000000000000003075 132.0
BYDH3_k127_5024503_5 FlhB HrpN YscU SpaS Family K04061 - - 0.000000000000000000000009157 104.0
BYDH3_k127_5024503_6 Domain of unknown function (DUF4105) - - - 0.0000000000000000001272 92.0
BYDH3_k127_5031313_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 532.0
BYDH3_k127_5031313_1 C-terminal, D2-small domain, of ClpB protein K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005095 277.0
BYDH3_k127_5031313_2 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000001651 254.0
BYDH3_k127_5031313_3 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000003198 239.0
BYDH3_k127_5031313_4 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000009683 228.0
BYDH3_k127_5039980_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 2.597e-218 688.0
BYDH3_k127_5039980_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000001728 159.0
BYDH3_k127_506492_0 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000002854 241.0
BYDH3_k127_5081327_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K09251 - 2.6.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 548.0
BYDH3_k127_5081327_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 492.0
BYDH3_k127_5081327_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K09251 - 2.6.1.82 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006087 400.0
BYDH3_k127_5081327_3 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 303.0
BYDH3_k127_5081327_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000005144 158.0
BYDH3_k127_5081327_5 - K01865 - 5.4.4.1 0.0000000000000000000344 93.0
BYDH3_k127_5103935_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000997 315.0
BYDH3_k127_5103935_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000007132 147.0
BYDH3_k127_5114277_0 PFAM NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 1.36e-204 640.0
BYDH3_k127_5114277_1 PFAM amidohydrolase 2 K07045 - - 0.0000000000000000000000000000000000000004239 151.0
BYDH3_k127_5114277_2 4Fe-4S binding domain - - - 0.00000000000002322 74.0
BYDH3_k127_5116310_0 NAD synthase - - - 0.0 1023.0
BYDH3_k127_5116310_1 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000997 224.0
BYDH3_k127_5116310_2 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000004101 213.0
BYDH3_k127_5116310_3 Fe-S-cluster oxidoreductase K06940 - - 0.0000000000000000000000000000000000000000000000007297 176.0
BYDH3_k127_5116310_4 Flagellar protein YcgR - - - 0.00000000000000000000000000000000005681 142.0
BYDH3_k127_5116310_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000009745 137.0
BYDH3_k127_5116310_6 Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P) K03414 GO:0001539,GO:0003674,GO:0003824,GO:0004721,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0032991,GO:0036211,GO:0040011,GO:0042578,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071704,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0097588,GO:0098561,GO:0140096,GO:1901564 - 0.0000000000000004066 89.0
BYDH3_k127_5140603_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K02484 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009553 477.0
BYDH3_k127_5140603_1 PFAM response regulator receiver K02483 - - 0.0000000000000000000000000000000000000000009017 156.0
BYDH3_k127_5148880_0 Belongs to the ABC transporter superfamily K02032 - - 0.000000000000000000000000000753 114.0
BYDH3_k127_5148880_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000001368 119.0
BYDH3_k127_5148880_2 geranylgeranyl reductase activity - GO:0000166,GO:0003674,GO:0005488,GO:0008150,GO:0008152,GO:0009404,GO:0009987,GO:0019748,GO:0030153,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0048037,GO:0050660,GO:0050662,GO:0097159,GO:1901265,GO:1901363 - 0.00000000000000002006 94.0
BYDH3_k127_5166754_0 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 482.0
BYDH3_k127_5166754_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000006021 214.0
BYDH3_k127_5166754_2 PFAM peptidase S45 penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 0.000000000000000000000000000000000000000000000000000000002992 203.0
BYDH3_k127_5199363_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 492.0
BYDH3_k127_5199363_1 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004142 284.0
BYDH3_k127_5199363_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000006639 123.0
BYDH3_k127_5203068_0 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 352.0
BYDH3_k127_5203068_1 peroxiredoxin activity K00627,K01607 - 2.3.1.12,4.1.1.44 0.00000000000000000000000000000000000000000000000000003625 188.0
BYDH3_k127_5203068_2 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000338 174.0
BYDH3_k127_5203068_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000001118 166.0
BYDH3_k127_5205341_0 thiosulfate sulfurtransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 574.0
BYDH3_k127_5205341_1 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 322.0
BYDH3_k127_5205341_10 Protein of unknown function (DUF2892) - - - 0.000000000000000001351 86.0
BYDH3_k127_5205341_2 - - - - 0.0000000000000000000000000000000000000000000001517 181.0
BYDH3_k127_5205341_3 Glycogen recognition site of AMP-activated protein kinase - - - 0.000000000000000000000000000000000000000000001442 171.0
BYDH3_k127_5205341_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000005097 143.0
BYDH3_k127_5205341_5 Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000000000000000001981 130.0
BYDH3_k127_5205341_6 Belongs to the UPF0251 family - - - 0.000000000000000000000000000005313 122.0
BYDH3_k127_5205341_7 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000009757 121.0
BYDH3_k127_5205341_8 - - - - 0.0000000000000000000345 94.0
BYDH3_k127_5205341_9 formate dehydrogenase K03620 - - 0.000000000000000001135 92.0
BYDH3_k127_5234620_0 PFAM Extracellular ligand-binding receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 392.0
BYDH3_k127_5234620_1 PFAM Extracellular ligand-binding receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 381.0
BYDH3_k127_5234620_2 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004589 313.0
BYDH3_k127_5234620_3 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000001918 85.0
BYDH3_k127_5252003_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 5.238e-208 652.0
BYDH3_k127_5252003_1 PFAM aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 443.0
BYDH3_k127_5252003_2 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000301 244.0
BYDH3_k127_5252003_3 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000008069 147.0
BYDH3_k127_5257415_0 Thiamine pyrophosphate enzyme, central K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 549.0
BYDH3_k127_5257415_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000009753 237.0
BYDH3_k127_5257415_2 TIGRFAM Acetolactate synthase, small subunit K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000003094 201.0
BYDH3_k127_5295119_0 Amino acid permease - - - 1.901e-285 889.0
BYDH3_k127_5295119_1 Amino acid permease - - - 3.926e-249 781.0
BYDH3_k127_5354749_0 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 383.0
BYDH3_k127_5354749_1 PFAM NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 305.0
BYDH3_k127_5354749_2 Gram-negative-bacterium-type cell wall biogenesis - GO:0000270,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006807,GO:0008150,GO:0008152,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0030203,GO:0031224,GO:0042546,GO:0043164,GO:0043170,GO:0044085,GO:0044425,GO:0044464,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901564 - 0.0000000000000000000000000000000000000000000009672 174.0
BYDH3_k127_5354749_3 Protein of unknown function (DUF2288) - - - 0.000000000000054 76.0
BYDH3_k127_5354970_0 formate C-acetyltransferase glycine radical - - - 0.0 1217.0
BYDH3_k127_5354970_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K04069 - 1.97.1.4 0.0000000000000000000000000176 110.0
BYDH3_k127_5358029_0 PFAM CO dehydrogenase acetyl-CoA synthase complex beta subunit K14138 - 2.3.1.169 2.516e-291 932.0
BYDH3_k127_5358029_1 Prismane/CO dehydrogenase family K00198 - 1.2.7.4 4.57e-197 634.0
BYDH3_k127_5358029_2 Domain of unknown function (DUF4445) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007884 477.0
BYDH3_k127_5358029_3 acetyl-CoA catabolic process K00197 - 2.1.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 347.0
BYDH3_k127_5358029_4 CO dehydrogenase acetyl-CoA synthase delta subunit K00194 - 2.1.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004399 321.0
BYDH3_k127_5358029_5 PFAM Cobyrinic acid ac-diamide synthase K07321 - - 0.000000000000000000000000000000000000000000000000000000345 202.0
BYDH3_k127_5358029_6 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.000000000000000000000000000000000000000000000005737 177.0
BYDH3_k127_5358029_7 Lrp/AsnC ligand binding domain - - - 0.000000000000000000000000002055 119.0
BYDH3_k127_5358029_8 Zinc-dependent metalloprotease - - - 0.00000000001108 74.0
BYDH3_k127_5425142_0 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000784 486.0
BYDH3_k127_5425142_1 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 382.0
BYDH3_k127_5425142_2 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 295.0
BYDH3_k127_5425142_3 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007654 254.0
BYDH3_k127_5425142_4 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000001015 185.0
BYDH3_k127_5425142_5 Could be involved in septation K06412 - - 0.0000000000000000000000000001474 116.0
BYDH3_k127_5430554_0 methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 492.0
BYDH3_k127_5430554_1 PFAM Response regulator receiver domain K07712 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007419 463.0
BYDH3_k127_5430554_2 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000000000000000000000000000006926 223.0
BYDH3_k127_5430554_3 cell redox homeostasis K03671 - - 0.000001831 55.0
BYDH3_k127_5435233_0 silver ion transport K07787,K15726 - - 1.43e-215 688.0
BYDH3_k127_5445184_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005664 486.0
BYDH3_k127_5445184_1 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001411 244.0
BYDH3_k127_546307_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006925 548.0
BYDH3_k127_5477655_0 Histidine kinase HAMP K07642 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 297.0
BYDH3_k127_5477655_1 transposase activity K07483,K07497 - - 0.0000000000144 67.0
BYDH3_k127_5492985_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 1.596e-281 880.0
BYDH3_k127_5492985_1 Anion-transporting ATPase K07321 - - 0.0000000000000000000000000000000000000000000000000000000003993 208.0
BYDH3_k127_5492985_2 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000002989 164.0
BYDH3_k127_5492985_3 - - - - 0.00001217 53.0
BYDH3_k127_5493418_0 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 316.0
BYDH3_k127_5493418_1 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 290.0
BYDH3_k127_5493418_2 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005394 261.0
BYDH3_k127_5493418_3 integral membrane protein - - - 0.0000000000000000000000000000000000000000002341 164.0
BYDH3_k127_5493418_4 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.00000000000000000000000001377 111.0
BYDH3_k127_5493932_0 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 330.0
BYDH3_k127_5493932_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000004751 230.0
BYDH3_k127_5493932_2 PFAM DoxX family protein - - - 0.00000000000000000000000000000000000000000000000000000589 195.0
BYDH3_k127_5493932_3 molybdate ion transport K02019 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000005661 99.0
BYDH3_k127_5493932_4 PFAM Rhodanese domain protein - - - 0.000002332 52.0
BYDH3_k127_549493_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 480.0
BYDH3_k127_549493_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000664 236.0
BYDH3_k127_549493_2 long-chain fatty acid transporting porin activity K06076 - - 0.000000000000000000000000001689 115.0
BYDH3_k127_549493_3 Dehydrogenase E1 component K00615 - 2.2.1.1 0.00000000000000000000004475 100.0
BYDH3_k127_549493_4 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.000000008188 64.0
BYDH3_k127_5503783_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0046983,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.0 1032.0
BYDH3_k127_5503783_1 PHP-associated K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000008931 205.0
BYDH3_k127_5503783_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000005653 192.0
BYDH3_k127_5503783_3 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000003004 201.0
BYDH3_k127_5503783_4 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000538 154.0
BYDH3_k127_5503783_5 Histidine kinase K02660,K11525 - - 0.0000000000000006316 91.0
BYDH3_k127_5514842_0 Oligopeptide/dipeptide transporter, C-terminal region K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 422.0
BYDH3_k127_5514842_1 Belongs to the ABC transporter superfamily K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009391 401.0
BYDH3_k127_5514842_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 359.0
BYDH3_k127_5514842_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.000000000000000000000000000001751 122.0
BYDH3_k127_5514842_4 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000000000286 116.0
BYDH3_k127_5546743_0 Tetratricopeptide repeat - - - 2.535e-195 619.0
BYDH3_k127_5546743_1 basal body rod protein K02390 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004339 273.0
BYDH3_k127_5546743_2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000238 256.0
BYDH3_k127_5546743_3 rRNA methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000261 212.0
BYDH3_k127_5546743_4 Aminoacyl-tRNA editing domain - - - 0.00000000000000000000000000000000000000000000000000000000008128 208.0
BYDH3_k127_5546743_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000000000000000000000000000000000001812 146.0
BYDH3_k127_5546743_6 Universal stress protein - - - 0.0000000000000000000000000003641 118.0
BYDH3_k127_5546743_7 oxidoreductase - - - 0.00000000000000000000299 96.0
BYDH3_k127_5546743_8 pyridine nucleotide-disulphide oxidoreductase - - - 0.0000005898 53.0
BYDH3_k127_5546743_9 PFAM flagellar hook-length control K02414 - - 0.00009041 55.0
BYDH3_k127_5561389_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 1.262e-308 963.0
BYDH3_k127_5561389_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 597.0
BYDH3_k127_5561389_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 340.0
BYDH3_k127_5561389_3 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000006352 167.0
BYDH3_k127_5561389_4 SMART Metal-dependent phosphohydrolase, HD region - - - 0.000000000000000000000000000000005755 144.0
BYDH3_k127_5561389_5 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000001919 115.0
BYDH3_k127_556808_0 Belongs to the ALAD family K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 430.0
BYDH3_k127_556808_1 SMART Elongator protein 3 MiaB NifB K22227 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 316.0
BYDH3_k127_556808_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000001078 221.0
BYDH3_k127_556808_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.000000000000000000000000000000000000000000000004797 184.0
BYDH3_k127_556808_4 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000004938 159.0
BYDH3_k127_556808_5 SMART regulatory protein AsnC Lrp family - - - 0.00000000000000000000000000000000000002675 147.0
BYDH3_k127_556808_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000007075 114.0
BYDH3_k127_556808_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000001879 112.0
BYDH3_k127_556808_8 - - - - 0.0000000000000001144 86.0
BYDH3_k127_556808_9 - - - - 0.0000000000000007782 83.0
BYDH3_k127_5580809_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 537.0
BYDH3_k127_5582149_0 tRNA processing K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 304.0
BYDH3_k127_5582149_1 (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001337 264.0
BYDH3_k127_5582149_2 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000008021 164.0
BYDH3_k127_5582149_3 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.0000000000002478 73.0
BYDH3_k127_5585758_0 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 560.0
BYDH3_k127_5585758_1 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000007203 187.0
BYDH3_k127_5617740_0 Putative TM nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000977 280.0
BYDH3_k127_5617740_1 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000001345 177.0
BYDH3_k127_5617740_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000001468 180.0
BYDH3_k127_5617740_3 TIGRFAM formate dehydrogenase family accessory protein FdhD K02379 - - 0.00000000002364 71.0
BYDH3_k127_5642495_0 Adenine deaminase C-terminal domain K01486 - 3.5.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 606.0
BYDH3_k127_5642495_1 Fatty acid desaturase K00496 - 1.14.15.3 0.0000000000000000000000000000000000000000000000000000000000000000001698 236.0
BYDH3_k127_5697420_0 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 331.0
BYDH3_k127_5697420_1 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001191 246.0
BYDH3_k127_5700261_0 Type II secretion system (T2SS), protein M K02462 - - 0.0000000000003486 77.0
BYDH3_k127_5700261_1 Fimbrial assembly family protein K02461 - - 0.000001043 60.0
BYDH3_k127_5706456_0 Saccharopine dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001098 275.0
BYDH3_k127_5706456_1 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000006025 194.0
BYDH3_k127_5751954_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000004438 169.0
BYDH3_k127_5751954_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000001375 61.0
BYDH3_k127_5763642_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004097 429.0
BYDH3_k127_5763642_1 Calcineurin-like phosphoesterase K07098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 389.0
BYDH3_k127_5763642_2 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009906 303.0
BYDH3_k127_5763642_3 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000001835 262.0
BYDH3_k127_5763642_4 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001662 259.0
BYDH3_k127_5763642_5 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000009654 236.0
BYDH3_k127_5763642_6 PFAM Cold-shock K03704 - - 0.000000000000000000000000009486 111.0
BYDH3_k127_5813590_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 531.0
BYDH3_k127_5813590_1 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000003736 115.0
BYDH3_k127_5813590_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000001449 79.0
BYDH3_k127_5835258_0 Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides K10011 - 1.1.1.305,2.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007342 276.0
BYDH3_k127_5835258_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.00000000003322 72.0
BYDH3_k127_5835258_2 FAD dependent oxidoreductase - - - 0.000000005347 66.0
BYDH3_k127_5852883_0 Belongs to the thiolase family K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 511.0
BYDH3_k127_5852883_1 Belongs to the enoyl-CoA hydratase isomerase family K15016 - 1.1.1.35,4.2.1.17 0.00000000000000000000000000000000005987 138.0
BYDH3_k127_5852883_2 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.00000000000000000000001911 102.0
BYDH3_k127_5855416_0 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009541 275.0
BYDH3_k127_5855416_1 Glyoxalase-like domain K07032 - - 0.00000000000000000000000000000000000000008581 151.0
BYDH3_k127_5855416_2 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000004299 102.0
BYDH3_k127_5855416_4 Rhodanese Homology Domain - - - 0.00008326 45.0
BYDH3_k127_5857559_0 TIGRFAM glutamate synthase, NADH NADPH, small subunit K00123 - 1.17.1.9 1.748e-313 996.0
BYDH3_k127_5857559_1 4Fe-4S ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000483 257.0
BYDH3_k127_5857559_2 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.00000000000000004062 83.0
BYDH3_k127_5866101_0 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 316.0
BYDH3_k127_5866101_1 Acyl-CoA dehydrogenase N terminal K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001762 283.0
BYDH3_k127_5866101_2 PFAM PHP domain K07053 - 3.1.3.97 0.00000000000000000001369 95.0
BYDH3_k127_5878995_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006644 455.0
BYDH3_k127_5878995_1 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 306.0
BYDH3_k127_5878995_2 ABC transporter related K01996 - - 0.0000000000000000000000000000000001042 139.0
BYDH3_k127_5878995_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000006397 101.0
BYDH3_k127_5903749_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 566.0
BYDH3_k127_5903749_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 295.0
BYDH3_k127_5903749_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000000001093 190.0
BYDH3_k127_590946_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004262 266.0
BYDH3_k127_590946_1 citrate synthase K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000271 223.0
BYDH3_k127_5948907_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 419.0
BYDH3_k127_5948907_1 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000007333 232.0
BYDH3_k127_5948907_2 Transglycosylase SLT domain K08305 - - 0.0000000000000000000000000000000002024 144.0
BYDH3_k127_5950864_0 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 428.0
BYDH3_k127_5954705_0 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.000000000000000000000000000000000000000000000000000000000000853 220.0
BYDH3_k127_5954705_1 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.000000000000000000000000003245 114.0
BYDH3_k127_5954705_3 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.000000005574 58.0
BYDH3_k127_5971004_0 COG3263 NhaP-type Na H and K H K11105 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000563 523.0
BYDH3_k127_5988798_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 308.0
BYDH3_k127_5988798_1 Formate dehydrogenase iron-sulfur subunit K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 289.0
BYDH3_k127_5988798_2 Prokaryotic cytochrome b561 K00127 - - 0.000000000000000000000000000000000000000000000002712 180.0
BYDH3_k127_5988798_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000001307 169.0
BYDH3_k127_5988798_4 nuclease activity - - - 0.0000000000000000000000000000000000000001811 153.0
BYDH3_k127_5988798_5 toxin-antitoxin pair type II binding - - - 0.000000001086 63.0
BYDH3_k127_6027489_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000005881 189.0
BYDH3_k127_6027489_1 radical SAM domain protein - - - 0.000000002091 60.0
BYDH3_k127_6036950_0 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 302.0
BYDH3_k127_6036950_1 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002273 249.0
BYDH3_k127_6036950_2 transcriptional regulator - - - 0.00000000000000000000000001171 119.0
BYDH3_k127_6045787_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 3.391e-212 698.0
BYDH3_k127_6045787_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 466.0
BYDH3_k127_6055750_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000622 571.0
BYDH3_k127_6055750_1 asparaginyl-tRNA synthetase K01893 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 367.0
BYDH3_k127_6055750_2 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009266 370.0
BYDH3_k127_6055750_3 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001006 246.0
BYDH3_k127_6055750_4 MaoC like domain K17865 - 4.2.1.55 0.000000000000000000000000000000000000000000000000000000001328 203.0
BYDH3_k127_6095245_0 transporter, DctM subunit K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004106 473.0
BYDH3_k127_6095245_1 Trap-type c4-dicarboxylate transport system, small permease component K11689 - - 0.000000000000000000000000000000000000000000000000000002809 195.0
BYDH3_k127_6108474_0 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000006264 193.0
BYDH3_k127_6108474_1 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000005375 181.0
BYDH3_k127_6108474_2 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000007834 168.0
BYDH3_k127_6108474_3 PFAM HNH endonuclease - - - 0.0000000000000000000000000000000000000009613 151.0
BYDH3_k127_6108474_4 Polysaccharide deacetylase - - - 0.0000000000000000000002836 106.0
BYDH3_k127_6108474_5 hemerythrin-like metal-binding K07216 - - 0.000000000000000000007544 97.0
BYDH3_k127_6126982_0 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000494 329.0
BYDH3_k127_6126982_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030234,GO:0043021,GO:0043022,GO:0043023,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0098772 - 0.00000000000000000000000000000000000000000000004061 178.0
BYDH3_k127_6126982_2 Pfam SNARE associated Golgi protein - - - 0.0000000000000000000000001538 115.0
BYDH3_k127_6132530_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000001505 268.0
BYDH3_k127_6132530_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000002859 161.0
BYDH3_k127_6132530_2 Adenylosuccinate lyase C-terminus K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.00000000000000000000000000000000000002247 146.0
BYDH3_k127_6155781_0 NlpC/P60 family K19223,K19224,K21471 - - 0.000002643 60.0
BYDH3_k127_6174104_0 NAD(P)-binding Rossmann-like domain - - - 1.194e-239 742.0
BYDH3_k127_6174104_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 383.0
BYDH3_k127_6200095_0 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009668 273.0
BYDH3_k127_6200095_1 Flavodoxin-like fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009475 253.0
BYDH3_k127_6200095_2 enoyl-CoA hydratase - - - 0.0000000000000000000000000000000004027 133.0
BYDH3_k127_6206126_0 AMP-binding enzyme C-terminal domain K00666,K12508 - 6.2.1.34 5.58e-230 726.0
BYDH3_k127_6206126_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 291.0
BYDH3_k127_6206126_2 pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000000001423 148.0
BYDH3_k127_6206126_3 IMP dehydrogenase / GMP reductase domain K00459,K02371 - 1.13.12.16,1.3.1.9 0.0005346 44.0
BYDH3_k127_6255693_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 2.486e-208 672.0
BYDH3_k127_6255693_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 399.0
BYDH3_k127_6255693_3 coenzyme F420 binding K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000001822 175.0
BYDH3_k127_6255693_4 COG1233 Phytoene dehydrogenase and related - - - 0.0000000000000000000000000000000003226 135.0
BYDH3_k127_6269308_0 PFAM NAD binding domain of 6-phosphogluconate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 404.0
BYDH3_k127_6269308_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 - 1.1.1.27,1.1.1.37 0.000000000000000000000000000000000000000000131 164.0
BYDH3_k127_630208_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 4.223e-302 941.0
BYDH3_k127_630208_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.000000000000000000000000000000000000000000000000000000001434 206.0
BYDH3_k127_630208_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000009463 88.0
BYDH3_k127_630208_3 Elongation factor Tu C-terminal domain K02358 - - 0.00000000000000003376 81.0
BYDH3_k127_632161_0 PFAM type II secretion system K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004137 481.0
BYDH3_k127_632161_1 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 465.0
BYDH3_k127_632161_2 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000002675 145.0
BYDH3_k127_632161_3 - - - - 0.00000000000000000000000001382 111.0
BYDH3_k127_632161_4 Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides K03478 - 3.5.1.105 0.0000000000000000009999 95.0
BYDH3_k127_6321928_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 464.0
BYDH3_k127_6321928_1 FlhB HrpN YscU SpaS Family K02401 - - 0.0000000000000000000000000000000000000000000000000000000000003624 215.0
BYDH3_k127_6322269_0 Carboxyl transferase domain K01969,K13778 - 6.4.1.4,6.4.1.5 7.636e-263 818.0
BYDH3_k127_6322269_1 Acyl-CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 337.0
BYDH3_k127_6322269_2 PFAM Carbamoyl-phosphate synthase L chain K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008367 318.0
BYDH3_k127_6322269_3 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000004622 231.0
BYDH3_k127_6362495_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005295 276.0
BYDH3_k127_6362495_1 Aconitase family (aconitate hydratase) K01681 - 4.2.1.3 0.00000000000000000000000000000000000000000000000005628 180.0
BYDH3_k127_6362495_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000008859 99.0
BYDH3_k127_6364066_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 2.326e-320 988.0
BYDH3_k127_6373244_0 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 346.0
BYDH3_k127_6373244_1 DUF based on E. rectale Gene description (DUF3880) K06320 - - 0.00000000000000000000000000000000001056 150.0
BYDH3_k127_6381775_0 TRAM domain K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 408.0
BYDH3_k127_6381775_1 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006066 259.0
BYDH3_k127_6381775_2 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000002061 222.0
BYDH3_k127_6381775_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000002303 161.0
BYDH3_k127_6381775_4 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.000000000000001902 83.0
BYDH3_k127_6381775_5 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 0.000001426 51.0
BYDH3_k127_6388942_0 Bacterial transferase hexapeptide (six repeats) K13018 - 2.3.1.201 2.469e-226 712.0
BYDH3_k127_6388942_1 Beta-eliminating lyase K13017 - 2.6.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 489.0
BYDH3_k127_6388942_2 Oxidoreductase FAD-binding domain K05916 - 1.14.12.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004653 422.0
BYDH3_k127_6388942_3 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 330.0
BYDH3_k127_6388942_4 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000000000000006531 218.0
BYDH3_k127_6388942_5 Flavin containing amine oxidoreductase K09835 - 5.2.1.13 0.00000000000000000000000000000000000000000000005686 172.0
BYDH3_k127_6388942_6 Chain length determinant protein - - - 0.000000001831 66.0
BYDH3_k127_6388942_7 Chain length determinant protein - - - 0.0001178 46.0
BYDH3_k127_6435475_0 Ribbon-helix-helix protein, copG family K07722 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000002973 184.0
BYDH3_k127_6435475_1 Cobalamin (Vitamin B12) biosynthesis CbiM protein K02007 - - 0.0000000000000000000000000000004298 128.0
BYDH3_k127_6435475_2 Stage II sporulation E family protein K07315 - 3.1.3.3 0.0000009179 55.0
BYDH3_k127_6441096_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 560.0
BYDH3_k127_6441096_1 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000001242 102.0
BYDH3_k127_6441096_2 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000615 80.0
BYDH3_k127_6448174_0 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004424 331.0
BYDH3_k127_6448174_1 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003402 257.0
BYDH3_k127_6448174_2 Isochorismatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000001086 226.0
BYDH3_k127_6448174_3 Histidine Phosphotransfer domain - - - 0.00000000000000000000000000000000000000006257 161.0
BYDH3_k127_6450521_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01585 - 4.1.1.19 4.159e-320 985.0
BYDH3_k127_6450521_1 PFAM Fibronectin, type III domain - - - 0.00000000000000000000000000002346 133.0
BYDH3_k127_6450521_2 cellulase activity - - - 0.00000000000002773 85.0
BYDH3_k127_6475448_0 PFAM Glutamine synthetase, catalytic K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 333.0
BYDH3_k127_6475448_1 Domain of unknown function (DUF4382) - - - 0.0000002029 63.0
BYDH3_k127_6478379_0 acetyl-CoA carboxylase, biotin carboxylase K01965 - 6.4.1.3 0.0 1429.0
BYDH3_k127_6478379_1 - - - - 0.000000000000000002937 87.0
BYDH3_k127_6492464_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 621.0
BYDH3_k127_6492464_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004693 435.0
BYDH3_k127_6492464_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 400.0
BYDH3_k127_6492464_3 PFAM Tripartite ATP-independent periplasmic - - - 0.00000000000000000000000000000000002872 142.0
BYDH3_k127_6492464_4 amino acid-binding ACT - - - 0.0000000000000000000000008212 109.0
BYDH3_k127_6500210_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005245 364.0
BYDH3_k127_6500210_1 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000000000001935 118.0
BYDH3_k127_6500210_2 TonB dependent receptor K02014,K16092 - - 0.0000000000000000001292 100.0
BYDH3_k127_6528375_0 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000002428 226.0
BYDH3_k127_6528375_1 NUDIX domain K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000003775 177.0
BYDH3_k127_6528375_3 Formate hydrogenlyase K12136,K15827 - - 0.00009384 47.0
BYDH3_k127_6544987_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 568.0
BYDH3_k127_6544987_1 PFAM glycosyl transferase family 51 K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003736 507.0
BYDH3_k127_6545898_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 6.805e-265 820.0
BYDH3_k127_6545898_1 PFAM multi antimicrobial extrusion protein MatE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 470.0
BYDH3_k127_6545898_10 Rubrerythrin - - - 0.000000006864 63.0
BYDH3_k127_6545898_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003758 466.0
BYDH3_k127_6545898_3 PFAM peptidase M48 Ste24p K06013 - 3.4.24.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 409.0
BYDH3_k127_6545898_4 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003172 313.0
BYDH3_k127_6545898_5 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000849 299.0
BYDH3_k127_6545898_6 - - - - 0.0000000000000000000000000000000000000000000000000000001677 207.0
BYDH3_k127_6545898_7 PFAM GAF domain protein - - - 0.00000000000000000000000000000000000000000000000000004542 193.0
BYDH3_k127_6545898_8 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000002059 183.0
BYDH3_k127_6545898_9 chain release factor K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.00000000000000000000000000000000000002249 153.0
BYDH3_k127_6555330_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001596 276.0
BYDH3_k127_6555330_1 UDP binding domain K02474 - - 0.000000000000000000000000000000000000000000000000000000000000003848 220.0
BYDH3_k127_6555330_2 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000008236 177.0
BYDH3_k127_6555330_3 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0000000000000000000000001124 107.0
BYDH3_k127_6572663_0 PDZ domain (Also known as DHR or GLGF) K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007911 335.0
BYDH3_k127_6572663_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 331.0
BYDH3_k127_6572663_2 CBS domain K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000178 280.0
BYDH3_k127_6572663_3 Glycoprotease family K01409,K14742 - 2.3.1.234 0.00000000000000000000000000000005338 135.0
BYDH3_k127_6572663_4 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.0000000000000000000000000000001764 136.0
BYDH3_k127_6577132_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001392 278.0
BYDH3_k127_6577132_1 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000006817 240.0
BYDH3_k127_6577132_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000001624 176.0
BYDH3_k127_6577132_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000014 161.0
BYDH3_k127_6577132_5 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0005488,GO:0036094,GO:0048037,GO:0050661,GO:0050662,GO:0097159,GO:1901265,GO:1901363 1.1.1.25 0.0001912 48.0
BYDH3_k127_6583370_0 flagellar motor switch protein FliM K02416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 346.0
BYDH3_k127_6583370_1 PFAM MotA TolQ ExbB proton channel K02556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 301.0
BYDH3_k127_6583370_2 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000003062 232.0
BYDH3_k127_6583370_3 basal body rod protein K02390 - - 0.000000000000000000000000000000000000000000000000000754 186.0
BYDH3_k127_6583370_4 PFAM surface presentation of antigens (SPOA) protein K02417 - - 0.0000000000000000000000000000000000000002672 154.0
BYDH3_k127_6583370_5 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.000000000000000000000000000000000007616 145.0
BYDH3_k127_6583370_6 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.00000000000000000000000000000551 125.0
BYDH3_k127_6583370_7 PFAM OmpA MotB domain protein - - - 0.000000000000000000000000000006923 128.0
BYDH3_k127_6583370_8 flagellar K02418 - - 0.00000004132 61.0
BYDH3_k127_6593382_0 SMART PAS domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002166 299.0
BYDH3_k127_6593382_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009606 282.0
BYDH3_k127_6593382_2 TIGRFAM anaerobic ribonucleoside-triphosphate reductase activating protein K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000002568 253.0
BYDH3_k127_6593382_3 PAS domain - - - 0.0006879 45.0
BYDH3_k127_6615184_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009806 566.0
BYDH3_k127_6622890_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 2.389e-264 818.0
BYDH3_k127_6622890_1 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) - - - 0.0000000000000000000000000000001501 124.0
BYDH3_k127_6658297_0 type VI secretion protein K11900,K11901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 303.0
BYDH3_k127_6658297_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000002071 241.0
BYDH3_k127_6658297_2 Domain of unknown function (DUF5086) - - - 0.00000000004237 65.0
BYDH3_k127_6658297_3 Domain of unknown function (DUF5086) - - - 0.0005938 46.0
BYDH3_k127_6710579_0 COG2366 Protein related to penicillin acylase K01434,K07116 - 3.5.1.11,3.5.1.97 3.694e-239 760.0
BYDH3_k127_6731863_0 elongation factor Tu domain 2 protein K06207 - - 1.016e-283 881.0
BYDH3_k127_6731863_1 Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK) K02548 - 2.5.1.74 0.00000000000001293 77.0
BYDH3_k127_6775810_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 7.881e-242 774.0
BYDH3_k127_6775810_1 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000001653 151.0
BYDH3_k127_6775810_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000002539 108.0
BYDH3_k127_6775810_3 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.0000000000000000000002358 103.0
BYDH3_k127_6775810_4 - - - - 0.00027 48.0
BYDH3_k127_6791167_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 319.0
BYDH3_k127_6791167_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000000000000000000000000000000000000000001082 161.0
BYDH3_k127_6812046_0 Acyl-CoA dehydrogenase type 2 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 518.0
BYDH3_k127_6812046_1 acetoacetate decarboxylase K01574 - 4.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 287.0
BYDH3_k127_6827332_0 polar amino acid ABC transporter, inner membrane subunit K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 334.0
BYDH3_k127_6827332_1 extracellular solute-binding protein, family 3 K02030 - - 0.0000000000000000000000000000000000000000000000000000000001024 205.0
BYDH3_k127_6827332_2 Pas domain - - - 0.0000000000000000000000000000000000000000001281 180.0
BYDH3_k127_6831654_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.0 1363.0
BYDH3_k127_6831654_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 466.0
BYDH3_k127_6831654_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006543 398.0
BYDH3_k127_6831654_3 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 331.0
BYDH3_k127_6831654_4 radical SAM domain protein K06937,K13309 - 4.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 294.0
BYDH3_k127_6831654_5 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001465 274.0
BYDH3_k127_6831654_6 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000005015 220.0
BYDH3_k127_6831654_7 WHG domain - - - 0.000000000000000000000000000000000000000000000000000000000002109 215.0
BYDH3_k127_6831654_8 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000005013 184.0
BYDH3_k127_6833116_0 acyl-phosphate glycerol-3-phosphate acyltransferase activity K08591 - 2.3.1.15 0.00000000000001501 79.0
BYDH3_k127_6833116_1 Calcineurin-like phosphoesterase - - - 0.00002731 55.0
BYDH3_k127_6857427_0 TatD related DNase K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000186 232.0
BYDH3_k127_6857427_1 Inositol monophosphatase K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000001077 224.0
BYDH3_k127_6857427_2 PFAM Uncharacterised protein family UPF0047 - - - 0.0008282 42.0
BYDH3_k127_6862112_0 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000004625 186.0
BYDH3_k127_6862112_1 COG1538 Outer membrane protein K12340 - - 0.00000000000000000000000001136 119.0
BYDH3_k127_6874973_0 Uncharacterised conserved protein (DUF2156) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 329.0
BYDH3_k127_6874973_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000006112 149.0
BYDH3_k127_6874973_2 ATP synthase K02115 - - 0.0000000000000000000000000000000002552 134.0
BYDH3_k127_6874973_3 PFAM GGDEF domain containing protein - - - 0.0000000003595 61.0
BYDH3_k127_6880266_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 334.0
BYDH3_k127_6880266_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000006715 117.0
BYDH3_k127_6880266_2 Rho termination factor, N-terminal domain - - - 0.0000003009 57.0
BYDH3_k127_6887143_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 1.89e-228 727.0
BYDH3_k127_6887143_1 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 431.0
BYDH3_k127_6887143_2 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 387.0
BYDH3_k127_6887143_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000001883 227.0
BYDH3_k127_6887143_4 response regulator, receiver K03413 - - 0.0000000000000000000002126 96.0
BYDH3_k127_6887143_5 - - - - 0.000000000000000001751 93.0
BYDH3_k127_6898934_0 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001751 260.0
BYDH3_k127_6898934_1 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 0.0000000000000000000000007944 112.0
BYDH3_k127_6908121_0 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000005068 138.0
BYDH3_k127_6908121_1 Lipopolysaccharide kinase (Kdo/WaaP) family - - - 0.000000000008665 76.0
BYDH3_k127_6908121_2 Receptor family ligand binding region K01999 - - 0.0003772 49.0
BYDH3_k127_6908590_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000007159 234.0
BYDH3_k127_6908590_1 Protein of unknown function (DUF3494) - - - 0.000001604 54.0
BYDH3_k127_6920923_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 2.309e-265 830.0
BYDH3_k127_6920923_1 Pterin binding enzyme K00796,K13941 - 2.5.1.15,2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 312.0
BYDH3_k127_6920923_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000006242 182.0
BYDH3_k127_6920923_3 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000009869 113.0
BYDH3_k127_6920923_4 ATPase or kinase K06925 GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000003923 114.0
BYDH3_k127_6920923_5 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000006304 105.0
BYDH3_k127_6920923_6 Tetratricopeptide repeat-like domain - - - 0.0000000005936 68.0
BYDH3_k127_6955221_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002607 254.0
BYDH3_k127_6955221_1 PFAM PfkB domain protein K00847,K00852 - 2.7.1.15,2.7.1.4 0.0000000000000000000000000000000000000000000000000007081 195.0
BYDH3_k127_6955221_2 - - - - 0.00000000000000000000003872 105.0
BYDH3_k127_6955221_3 ACT domain K01079 - 3.1.3.3 0.0000000000000000000003438 100.0
BYDH3_k127_6981978_0 Type II secretion system (T2SS), protein K K02460 - - 0.000000000000000000000000000000002878 141.0
BYDH3_k127_6981978_1 Type II secretion system (T2SS), protein J K02459 - - 0.00000000005452 72.0
BYDH3_k127_6981978_2 Fimbrial assembly family protein K02461 - - 0.000001926 59.0
BYDH3_k127_6987419_0 asparagine synthase (Glutamine-hydrolyzing K01953 - 6.3.5.4 1.245e-284 882.0
BYDH3_k127_6987419_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 405.0
BYDH3_k127_6987419_2 YCII-related domain - - - 0.00000000000728 66.0
BYDH3_k127_6989198_0 PFAM Transposase IS116 IS110 IS902 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 295.0
BYDH3_k127_6989198_1 Transposase DDE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000005362 233.0
BYDH3_k127_7049006_0 Belongs to the TrpC family K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000004956 181.0
BYDH3_k127_7049006_1 Anthranilate synthase K01658,K01664 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016020,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000005607 154.0
BYDH3_k127_7049006_2 Serine dehydrogenase proteinase - - - 0.0000000000000000000000000000000000000002372 152.0
BYDH3_k127_7049006_3 PFAM Uncharacterised protein family UPF0150 - - - 0.000000000003674 69.0
BYDH3_k127_7055744_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000002637 241.0
BYDH3_k127_7061086_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261,K00262 - 1.4.1.3,1.4.1.4 1.802e-254 788.0
BYDH3_k127_7061086_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002231 273.0
BYDH3_k127_7064245_0 Ribonuclease R winged-helix domain K09720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 344.0
BYDH3_k127_7064245_1 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006023 257.0
BYDH3_k127_7064245_2 Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000001257 174.0
BYDH3_k127_7064245_3 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.00000000000000000000000000000002434 130.0
BYDH3_k127_7069934_0 dipeptide transport K02035 - - 1.476e-206 655.0
BYDH3_k127_7069934_1 nitrogen compound transport K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 496.0
BYDH3_k127_7069934_2 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000001368 218.0
BYDH3_k127_7099985_0 Collagenase K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004941 328.0
BYDH3_k127_7099985_1 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007547 265.0
BYDH3_k127_7099985_2 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005339 253.0
BYDH3_k127_7099985_3 Matrixin - - - 0.00000000000000000000000007952 118.0
BYDH3_k127_7146058_0 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 544.0
BYDH3_k127_7159654_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000004423 252.0
BYDH3_k127_7159654_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006064 249.0
BYDH3_k127_716433_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 342.0
BYDH3_k127_716433_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000005278 187.0
BYDH3_k127_716433_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000001045 158.0
BYDH3_k127_716955_0 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 6.798e-195 618.0
BYDH3_k127_716955_1 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.0000000003165 62.0
BYDH3_k127_716955_2 AI-2E family transporter - - - 0.00000003936 61.0
BYDH3_k127_717334_0 Elongation factor Tu domain 2 K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 484.0
BYDH3_k127_717334_1 Smr domain - - - 0.000000000000000000000000000000000000569 147.0
BYDH3_k127_717334_2 TIGRFAM DNA polymerase III, delta K02341 - 2.7.7.7 0.000000000000000000000000000000000001204 151.0
BYDH3_k127_7198379_0 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 386.0
BYDH3_k127_7198379_1 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000001234 200.0
BYDH3_k127_7198379_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335,K18331 - 1.12.1.3,1.6.5.3 0.000000001438 69.0
BYDH3_k127_7218591_0 N-terminal domain of unknown function (DUF4140) - - - 0.00000000000000000000000000000000000000000000001801 190.0
BYDH3_k127_7218591_1 repeat-containing protein - - - 0.00000000000000000000000000000000000000003419 161.0
BYDH3_k127_7218591_2 Sel1-like repeats. K07126 - - 0.0000000000000000006076 93.0
BYDH3_k127_7218591_3 Protein of unknown function, DUF488 - - - 0.0000000001709 61.0
BYDH3_k127_7224918_1 Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K07533 - 5.2.1.8 0.0000000004291 72.0
BYDH3_k127_7230768_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 2.115e-255 794.0
BYDH3_k127_7230768_1 23S rRNA (guanine(2445)-N(2))-methyltransferase activity K07444,K12297 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.264 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 484.0
BYDH3_k127_7230768_2 HAD-superfamily hydrolase subfamily IA, variant 3 K07025 - - 0.00000000000000000000000000000000000000000000000000000005406 202.0
BYDH3_k127_7230768_3 auxin-activated signaling pathway K07088 - - 0.000000000000000000000000000002769 124.0
BYDH3_k127_7249778_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000006944 228.0
BYDH3_k127_7249778_1 Hit family K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000000000005044 191.0
BYDH3_k127_7249778_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.0000000000000000000000000000000000000000000000000009484 186.0
BYDH3_k127_7249778_3 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000008465 153.0
BYDH3_k127_7267273_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.039e-210 675.0
BYDH3_k127_7267273_1 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 425.0
BYDH3_k127_728557_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 1.523e-201 632.0
BYDH3_k127_728557_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 345.0
BYDH3_k127_728557_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009009 290.0
BYDH3_k127_728557_3 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00171,K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000002585 171.0
BYDH3_k127_728557_4 Domain of unknown function (DUF1732) - - - 0.00000000000000000003046 94.0
BYDH3_k127_7287622_0 Belongs to the ParA family K04562 - - 0.0000000000000000000000000000000000000000000000000000000004226 214.0
BYDH3_k127_7287622_1 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000005481 209.0
BYDH3_k127_7310452_0 regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000001644 176.0
BYDH3_k127_7310452_1 - - - - 0.00000000000108 78.0
BYDH3_k127_7314857_0 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008342 531.0
BYDH3_k127_7314857_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 377.0
BYDH3_k127_7314857_2 PHB de-polymerase C-terminus K05973 - 3.1.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 342.0
BYDH3_k127_7314857_3 PHB/PHA accumulation regulator DNA-binding domain - - - 0.000000000000000000000000000000000000000000000001339 178.0
BYDH3_k127_7314857_4 - - - - 0.000000000000000001705 88.0
BYDH3_k127_7314857_5 - - - - 0.0000000000000002486 81.0
BYDH3_k127_7314857_6 - - - - 0.0000000000000002914 80.0
BYDH3_k127_7328624_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 1.373e-240 754.0
BYDH3_k127_7328624_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000001345 237.0
BYDH3_k127_7427794_0 PFAM AMP-dependent synthetase and ligase K00666,K01897 - 6.2.1.3 1.441e-225 711.0
BYDH3_k127_7427794_1 PFAM AMP-dependent synthetase and ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 468.0
BYDH3_k127_7427794_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005556 255.0
BYDH3_k127_7427794_3 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.00006424 50.0
BYDH3_k127_7440261_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008344 525.0
BYDH3_k127_7440261_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 455.0
BYDH3_k127_7462649_0 Chemotaxis signal transduction protein K03408 - - 0.00000000000000000000000000000006499 141.0
BYDH3_k127_7462649_1 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.000000000000000000000000000003058 136.0
BYDH3_k127_7462649_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000006455 73.0
BYDH3_k127_7497803_0 Psort location Cytoplasmic, score K01647,K01659 - 2.3.3.1,2.3.3.5 0.000000000000000000000000000000000000000000000008289 181.0
BYDH3_k127_7497803_1 GAF domain - - - 0.000000000000000000000000000000000000005515 161.0
BYDH3_k127_7497803_2 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 - 3.1.3.5 0.00000000000000000000000000003124 126.0
BYDH3_k127_7497803_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03832 - - 0.000000000000000001127 94.0
BYDH3_k127_7497803_4 Major facilitator superfamily - - - 0.000000000000005618 87.0
BYDH3_k127_7500769_0 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE K11893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 468.0
BYDH3_k127_7500769_1 ImcF-related N-terminal domain K11891 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007055 393.0
BYDH3_k127_7500769_2 Type VI secretion system protein DotU K11892 - - 0.00000000000000000000000000000000000000000000000000000000000006358 220.0
BYDH3_k127_7509965_0 HDOD domain - - - 0.0000000000000000001068 104.0
BYDH3_k127_751393_0 ferredoxin oxidoreductase K00169 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004704 446.0
BYDH3_k127_751393_1 ferredoxin oxidoreductase beta subunit K00170 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 395.0
BYDH3_k127_751393_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000001339 220.0
BYDH3_k127_751393_3 Transcriptional regulator, LysR family - - - 0.00000000000000000000000000000000000000000000000000000000001048 218.0
BYDH3_k127_751393_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000005672 173.0
BYDH3_k127_751393_5 4Fe-4S dicluster domain K00171 - 1.2.7.1 0.00000000000000000000000000000000008188 135.0
BYDH3_k127_7515313_0 Transposase domain (DUF772) K07481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009354 482.0
BYDH3_k127_7515386_0 SMART PUA domain containing protein K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000375 240.0
BYDH3_k127_7515386_1 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.000000000000000000000000000000000000000000000000003863 186.0
BYDH3_k127_7515386_2 HIT domain K02503 - - 0.0000000000000000000000000000000000007956 143.0
BYDH3_k127_7521404_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 482.0
BYDH3_k127_7521404_1 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000007813 162.0
BYDH3_k127_7521404_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582 - 3.1.11.5 0.000000000001938 68.0
BYDH3_k127_7550137_0 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005673 450.0
BYDH3_k127_7550137_1 Helix-hairpin-helix motif K02237 - - 0.00000000000009435 75.0
BYDH3_k127_7550137_2 DnaJ molecular chaperone homology domain K05516 - - 0.0000000001979 62.0
BYDH3_k127_7558045_0 symporter activity K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006142 436.0
BYDH3_k127_7558045_1 PFAM glycoside hydrolase, family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009448 388.0
BYDH3_k127_7561198_0 Radical SAM N-terminal - - - 2.18e-221 701.0
BYDH3_k127_7561198_1 Aminotransferase class I and II K00814 - 2.6.1.2 1.115e-216 679.0
BYDH3_k127_7561198_2 metal-dependent phosphohydrolase HD region K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006749 476.0
BYDH3_k127_7561198_3 Pfam:UPF0118 K03548 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 348.0
BYDH3_k127_7561198_4 thiolester hydrolase activity K01990,K06889 GO:0008150,GO:0009987,GO:0051301 - 0.0000000000000000000000000000000000000000000000000000000000000000004923 238.0
BYDH3_k127_7561198_5 Belongs to the UPF0307 family K09889 - - 0.0000004489 54.0
BYDH3_k127_7585446_0 Belongs to the thiolase family K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 301.0
BYDH3_k127_7585446_1 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000000000001168 152.0
BYDH3_k127_7592584_0 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006378 525.0
BYDH3_k127_7592584_1 Uncharacterised protein family (UPF0227) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 344.0
BYDH3_k127_7592584_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001479 272.0
BYDH3_k127_7592584_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000002342 68.0
BYDH3_k127_7592584_4 Uncharacterised protein family (UPF0227) - - - 0.00000000006934 64.0
BYDH3_k127_7592584_5 - - - - 0.0000005887 60.0
BYDH3_k127_7599892_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.00000000000000000000000000000000000000000000000000000000000000000001099 243.0
BYDH3_k127_7599892_1 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.000000000000000000000000000000000000000000005707 171.0
BYDH3_k127_7602150_0 type IV pilus assembly PilZ - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005142 355.0
BYDH3_k127_7602150_1 Histidine kinase - - - 0.00000000000000000009428 91.0
BYDH3_k127_7609382_0 glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 503.0
BYDH3_k127_7609382_1 SMART phosphoesterase PHP domain protein K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000005583 179.0
BYDH3_k127_7609382_2 PFAM response regulator receiver - - - 0.0000000000000000000000000000000000000000000001516 170.0
BYDH3_k127_7609382_3 Histidine kinase - - - 0.00000000000000000000000007768 112.0
BYDH3_k127_7609382_4 Response regulator receiver - - - 0.00000000000000004062 83.0
BYDH3_k127_7609910_0 Cache domain K03406 - - 0.000000000000000002539 97.0
BYDH3_k127_7609910_1 Histidine kinase-like ATPases K03407 - 2.7.13.3 0.0000002391 63.0
BYDH3_k127_7618514_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 403.0
BYDH3_k127_7618514_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005483 292.0
BYDH3_k127_7618514_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000001211 161.0
BYDH3_k127_7622018_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.595e-207 674.0
BYDH3_k127_7622018_1 NUDIX domain K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000001124 177.0
BYDH3_k127_7626466_0 TIGRFAM Acetate-CoA ligase K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 540.0
BYDH3_k127_7639235_0 proline dipeptidase activity K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 498.0
BYDH3_k127_7639235_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007002 276.0
BYDH3_k127_7639235_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002293 267.0
BYDH3_k127_7639235_3 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000003788 215.0
BYDH3_k127_7639235_4 - - - - 0.0000000000000001035 86.0
BYDH3_k127_7644505_0 His Kinase A (phosphoacceptor) domain - - - 1.751e-207 690.0
BYDH3_k127_7644505_1 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002237 282.0
BYDH3_k127_7644505_2 Pfam:DUF2029 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003939 265.0
BYDH3_k127_7645048_0 Winged helix-turn helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 297.0
BYDH3_k127_7645048_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000001785 195.0
BYDH3_k127_7645048_2 Belongs to the transketolase family K00615 - 2.2.1.1 0.000000000000001089 78.0
BYDH3_k127_7664504_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.827e-197 646.0
BYDH3_k127_7664504_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009651 390.0
BYDH3_k127_7664504_2 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000002846 152.0
BYDH3_k127_7664504_3 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000006936 123.0
BYDH3_k127_7664504_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177,K03483 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0000000000000000001857 90.0
BYDH3_k127_7664504_5 Protein of unknown function (DUF503) K09764 - - 0.0000000000000000003826 90.0
BYDH3_k127_7664504_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000008973 82.0
BYDH3_k127_7664504_7 Protein of unknown function (DUF448) K07742 - - 0.0000000002476 67.0
BYDH3_k127_7677838_0 HIT domain K19710 - 2.7.7.53 0.0000000000000000000000000000000000000000000000000000000000001288 216.0
BYDH3_k127_7677838_1 phosphoribosylglycinamide formyltransferase K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000006631 204.0
BYDH3_k127_7677838_2 RIO1 family K08851 - 2.7.11.1 0.00000000000000000000000000000000000000004087 154.0
BYDH3_k127_7677838_3 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.00000000000000000000000000000000003274 139.0
BYDH3_k127_7677838_4 Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes K03622 - - 0.0000000000000000000000000000001169 125.0
BYDH3_k127_7718194_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00058,K11216 - 1.1.1.399,1.1.1.95,2.7.1.189 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 428.0
BYDH3_k127_7718194_1 PFAM Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000005284 147.0
BYDH3_k127_7740807_0 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000683 224.0
BYDH3_k127_7740807_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000001848 177.0
BYDH3_k127_7745159_0 Butirosin biosynthesis protein H, N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006083 334.0
BYDH3_k127_7745159_1 Belongs to the UPF0145 family - - - 0.00000000000000000000000000000000000000000002182 164.0
BYDH3_k127_775875_0 Bacterial protein of unknown function (DUF853) K06915 - - 1.323e-225 709.0
BYDH3_k127_775875_1 Oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 408.0
BYDH3_k127_775875_2 WYL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 330.0
BYDH3_k127_775875_3 carboxylic ester hydrolase activity - - - 0.0000000000000000000000000000000000000000000000000000000001131 215.0
BYDH3_k127_775875_4 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000007641 209.0
BYDH3_k127_775875_5 PFAM Thiamine pyrophosphate K01652 - 2.2.1.6 0.000000000000000000000000000000000000000002082 158.0
BYDH3_k127_7781408_0 Found in ATP-dependent protease La (LON) K01338 - 3.4.21.53 8.451e-205 649.0
BYDH3_k127_7781408_1 Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 501.0
BYDH3_k127_7781408_2 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 288.0
BYDH3_k127_7781408_3 Putative papain-like cysteine peptidase (DUF1796) - - - 0.00000000000000000000000000000000000000000000000000102 192.0
BYDH3_k127_7781408_4 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000000002736 161.0
BYDH3_k127_7781408_5 transcriptional regulator, AsnC family - - - 0.00000000000000000000000000000000004931 141.0
BYDH3_k127_7781408_6 Acetyl-CoA hydrolase/transferase C-terminal domain - - - 0.000001297 52.0
BYDH3_k127_778141_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000002433 211.0
BYDH3_k127_778141_1 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000007508 214.0
BYDH3_k127_778141_2 PFAM MotA TolQ ExbB proton channel K03562 - - 0.0000000000000000000000000000000000000000007028 165.0
BYDH3_k127_778141_3 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000000000001007 150.0
BYDH3_k127_778141_4 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000000000002157 119.0
BYDH3_k127_778141_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000000003194 100.0
BYDH3_k127_778141_6 His Kinase A (phosphoacceptor) domain - - - 0.00000001081 57.0
BYDH3_k127_778141_7 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0008813 49.0
BYDH3_k127_7794736_0 PFAM Iron-containing alcohol dehydrogenase K00001,K19954 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003725 287.0
BYDH3_k127_7794736_1 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 0.000000000000000000000000000000000000000000000000001701 186.0
BYDH3_k127_7794736_2 4Fe-4S single cluster domain of Ferredoxin I K05337 - - 0.0000000000004594 71.0
BYDH3_k127_7796896_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002334 249.0
BYDH3_k127_7796896_1 PFAM Rhomboid family protein - - - 0.000000000000000000000000002244 117.0
BYDH3_k127_7796896_2 Protein of unknown function (DUF2905) - - - 0.0000000000006261 70.0
BYDH3_k127_7808035_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 522.0
BYDH3_k127_7808035_1 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000000003546 171.0
BYDH3_k127_7808035_2 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.0000000000000000000000517 108.0
BYDH3_k127_7808035_3 TIGRFAM phosphocarrier, HPr family K11189 - - 0.0000000000000000000006712 98.0
BYDH3_k127_7808035_4 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K01142,K10773 - 3.1.11.2,4.2.99.18 0.0000000000000001407 79.0
BYDH3_k127_7808035_5 Modulator of DNA gyrase K03568 - - 0.0000000008738 68.0
BYDH3_k127_7821272_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007964 444.0
BYDH3_k127_7821272_1 Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP- dependent clade X sub-subfamily K00850 - 2.7.1.11 0.000000001871 59.0
BYDH3_k127_7827644_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 3.775e-197 624.0
BYDH3_k127_7827644_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K00972 - 2.7.7.23,2.7.7.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 383.0
BYDH3_k127_7827644_2 Alpha amylase, catalytic domain - - - 0.00000009658 61.0
BYDH3_k127_7827644_3 exporters of the RND superfamily K07003 - - 0.0006171 45.0
BYDH3_k127_785024_0 two component, sigma54 specific, transcriptional regulator, Fis family K10943 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 310.0
BYDH3_k127_785024_1 peptidyl-tyrosine sulfation - - - 0.00000000000000001663 97.0
BYDH3_k127_7883964_0 Acyl-CoA dehydrogenase type 2 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009803 370.0
BYDH3_k127_7883964_1 Belongs to the thiolase family K07550 - - 0.00000000000000000000000000000000000000000000000000000000000000000002442 240.0
BYDH3_k127_7883964_2 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001681 235.0
BYDH3_k127_7883964_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000005537 103.0
BYDH3_k127_7898859_0 AIR synthase related protein domain protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 436.0
BYDH3_k127_7898859_1 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 441.0
BYDH3_k127_7898859_2 Formyl transferase K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000001782 256.0
BYDH3_k127_7898859_3 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000004797 58.0
BYDH3_k127_7898859_4 Heavy-metal resistance K07803 - - 0.000009603 54.0
BYDH3_k127_7898859_5 TIGRFAM prepilin-type N-terminal cleavage methylation domain - - - 0.0004221 50.0
BYDH3_k127_7903557_0 ferrous iron transmembrane transporter activity K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001474 262.0
BYDH3_k127_7903557_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000001172 187.0
BYDH3_k127_7903557_2 Ferric uptake regulator family K03711 - - 0.0000000000000000000000000005889 121.0
BYDH3_k127_7903557_3 FeoA K04758 - - 0.000000007245 63.0
BYDH3_k127_7904220_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 9.717e-210 662.0
BYDH3_k127_7923252_0 tryptophan synthase K01694,K10882 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 487.0
BYDH3_k127_7923252_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 291.0
BYDH3_k127_7923252_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K01665 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000001035 246.0
BYDH3_k127_7923252_3 with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000003484 228.0
BYDH3_k127_7923252_4 Belongs to the TrpC family K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000000000663 194.0
BYDH3_k127_7923252_5 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000007421 126.0
BYDH3_k127_7925829_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1064.0
BYDH3_k127_7925829_1 ferrous iron transmembrane transporter activity K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001386 250.0
BYDH3_k127_7926103_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 479.0
BYDH3_k127_7926103_1 phosphorelay signal transduction system K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008629 448.0
BYDH3_k127_7926103_2 UbiE COQ5 methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005953 417.0
BYDH3_k127_7926103_3 Cellulose biosynthesis protein BcsQ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004127 283.0
BYDH3_k127_7926103_4 methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000002849 202.0
BYDH3_k127_7926103_5 Histidine kinase - - - 0.00000000000000000002986 95.0
BYDH3_k127_7926103_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000005289 72.0
BYDH3_k127_7926103_7 PBS lyase HEAT-like repeat - - - 0.000005818 56.0
BYDH3_k127_7932002_0 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 487.0
BYDH3_k127_7932002_1 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000001359 235.0
BYDH3_k127_7932002_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000001528 82.0
BYDH3_k127_7944577_0 histone H2A K63-linked ubiquitination K03220,K03832 - - 0.0000000000000000000000000005049 122.0
BYDH3_k127_7944577_2 Tetratricopeptide repeat - - - 0.000000000358 70.0
BYDH3_k127_7947364_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 602.0
BYDH3_k127_7953011_0 PFAM ABC transporter related K02028,K10004 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 387.0
BYDH3_k127_7953011_1 PFAM Extracellular solute-binding protein, family 3 K02030,K10001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 352.0
BYDH3_k127_7953011_2 PFAM Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000005533 64.0
BYDH3_k127_795579_0 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 321.0
BYDH3_k127_795579_1 Flagellar hook-associated protein 2 N-terminus K02407 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000625 287.0
BYDH3_k127_795579_2 PFAM regulatory protein TetR K13770 - - 0.0000000000000000000000000000000000000000001073 166.0
BYDH3_k127_795579_3 Pfam:Kce K18013 - 2.3.1.247 0.0000000000000000000000000000004045 124.0
BYDH3_k127_795579_4 Protein conserved in bacteria K09986 - - 0.0000000000004212 74.0
BYDH3_k127_7961933_0 Putative glycosyl hydrolase domain - - - 0.000000000000000000000000000000000000000000000008386 188.0
BYDH3_k127_797591_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 387.0
BYDH3_k127_797591_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000005071 258.0
BYDH3_k127_8030258_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 4.866e-221 697.0
BYDH3_k127_8030258_1 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.000000000000000000000000000003926 120.0
BYDH3_k127_8032270_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 298.0
BYDH3_k127_8032270_1 alcohol dehydrogenase K13954 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000002653 236.0
BYDH3_k127_8032270_2 SCP-2 sterol transfer family - - - 0.000001125 61.0
BYDH3_k127_8095761_0 histidine kinase HAMP region domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009293 356.0
BYDH3_k127_8095761_1 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07713 - - 0.0000000000000002858 83.0
BYDH3_k127_8095761_2 Histidine kinase HAMP K02482 - 2.7.13.3 0.0000001645 59.0
BYDH3_k127_8111276_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 610.0
BYDH3_k127_8111276_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 589.0
BYDH3_k127_8111276_10 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000001224 131.0
BYDH3_k127_8111276_11 SprA-related family - - - 0.0000000000009422 74.0
BYDH3_k127_8111276_12 PFAM Pentapeptide repeats (8 copies) - - - 0.000000000006428 77.0
BYDH3_k127_8111276_13 Flagellar Assembly Protein A K09749 - - 0.0000001495 60.0
BYDH3_k127_8111276_14 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0001147 45.0
BYDH3_k127_8111276_2 PFAM glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 503.0
BYDH3_k127_8111276_3 PFAM Glycoside hydrolase 15-related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 437.0
BYDH3_k127_8111276_4 PFAM transferase hexapeptide repeat containing protein K00661 - 2.3.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 301.0
BYDH3_k127_8111276_5 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000857 274.0
BYDH3_k127_8111276_6 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000006265 239.0
BYDH3_k127_8111276_7 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000937 215.0
BYDH3_k127_8111276_8 riboflavin synthase, alpha subunit K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000000000001911 207.0
BYDH3_k127_8111276_9 Flagellar Assembly Protein A K09749 - - 0.0000000000000000000000000000000000000000005261 168.0
BYDH3_k127_8112843_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000003597 196.0
BYDH3_k127_811718_0 Methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 356.0
BYDH3_k127_811718_1 protein histidine kinase activity - - - 0.00000000000000000000000000000009007 139.0
BYDH3_k127_811718_2 Cache_2 K08738 - - 0.0000000003041 67.0
BYDH3_k127_8140583_0 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 520.0
BYDH3_k127_8140583_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008991 365.0
BYDH3_k127_8140583_2 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 358.0
BYDH3_k127_8140583_3 ATPases associated with a variety of cellular activities K17324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002822 264.0
BYDH3_k127_8146646_0 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002655 246.0
BYDH3_k127_8146646_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001372 245.0
BYDH3_k127_8146646_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000001286 216.0
BYDH3_k127_8146646_3 histidine kinase HAMP region domain protein K13598 - 2.7.13.3 0.00000000000000000000000001119 115.0
BYDH3_k127_8146646_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 - - 0.000000000006256 69.0
BYDH3_k127_8146917_0 Belongs to the RtcB family K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 551.0
BYDH3_k127_8146917_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 286.0
BYDH3_k127_8146917_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000002686 194.0
BYDH3_k127_8146917_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000002218 183.0
BYDH3_k127_8146917_4 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000004862 133.0
BYDH3_k127_8146917_5 Archease protein family (MTH1598/TM1083) - - - 0.000000000000000001569 91.0
BYDH3_k127_8181185_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 332.0
BYDH3_k127_8181185_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000004308 258.0
BYDH3_k127_8181185_2 Belongs to the UPF0434 family K09791 - - 0.0000000000000000137 82.0
BYDH3_k127_818535_0 VWA domain containing CoxE-like protein K07161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 447.0
BYDH3_k127_818535_1 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000001934 169.0
BYDH3_k127_818535_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000006437 49.0
BYDH3_k127_8192243_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005163 502.0
BYDH3_k127_8192243_1 endonuclease III K07457 - - 0.0000000000000000000000000000000000000000000000000000000000000000429 230.0
BYDH3_k127_8192243_2 Enoyl-CoA hydratase/isomerase - - - 0.00000000000133 73.0
BYDH3_k127_8192243_3 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.0000000007165 60.0
BYDH3_k127_8197302_0 L,D-transpeptidase catalytic domain K16291 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 526.0
BYDH3_k127_8197302_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 437.0
BYDH3_k127_8197302_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005015 409.0
BYDH3_k127_8197302_3 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001444 278.0
BYDH3_k127_8197302_4 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000001209 230.0
BYDH3_k127_8197302_5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000005656 175.0
BYDH3_k127_8197302_6 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.000000000000000000000000000000000002402 145.0
BYDH3_k127_8197302_7 Protein conserved in bacteria K09774 - - 0.000000000002827 75.0
BYDH3_k127_8197302_8 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0005841 49.0
BYDH3_k127_8200721_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031420,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 609.0
BYDH3_k127_8200721_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K11383 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 315.0
BYDH3_k127_8200721_2 protein histidine kinase activity K11383 - 2.7.13.3 0.00000000000000000000000000000000001503 138.0
BYDH3_k127_8208361_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008302 509.0
BYDH3_k127_8208361_1 Amidase K01426 - 3.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005672 348.0
BYDH3_k127_8208361_2 PFAM Enoyl-CoA hydratase isomerase K01782,K01825 - 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 347.0
BYDH3_k127_824428_0 Flagellar protein export ATPase FliI K02412 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 529.0
BYDH3_k127_824428_1 flagellar motor switch protein FliG K02410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 314.0
BYDH3_k127_824428_2 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 305.0
BYDH3_k127_824428_3 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000000000000000000006574 149.0
BYDH3_k127_824428_4 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.00000000000000000003218 94.0
BYDH3_k127_824428_5 Flagellar assembly protein FliH K02411 - - 0.0000000000000000006631 94.0
BYDH3_k127_824428_6 Bacterial regulatory protein, Fis family K10943 - - 0.000000000000359 71.0
BYDH3_k127_824428_7 Flagellar hook-basal body complex protein FliE K02408 - - 0.000000000002747 70.0
BYDH3_k127_8258575_0 Bacterial transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 604.0
BYDH3_k127_8258575_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 456.0
BYDH3_k127_8258575_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000007825 177.0
BYDH3_k127_8258575_3 Belongs to the HMG-CoA reductase family K00021 GO:0003674,GO:0003824,GO:0004420,GO:0006629,GO:0006694,GO:0006720,GO:0008150,GO:0008152,GO:0008202,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016125,GO:0016126,GO:0016491,GO:0016614,GO:0016616,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617 1.1.1.34 0.0000000008817 66.0
BYDH3_k127_8263880_0 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.00000000000000000000000000000000000000000000000000005331 194.0
BYDH3_k127_8263880_1 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000004601 126.0
BYDH3_k127_8263880_2 PFAM peptidase K21471 - - 0.0000000000000000000000000000007519 134.0
BYDH3_k127_8263880_3 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000003933 94.0
BYDH3_k127_8263880_4 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000003349 79.0
BYDH3_k127_8263880_5 Helix-turn-helix XRE-family like proteins - - - 0.00006038 51.0
BYDH3_k127_8270428_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004611 347.0
BYDH3_k127_8270428_1 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000271 143.0
BYDH3_k127_8283789_0 PFAM ADP-ribosylation Crystallin J1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 322.0
BYDH3_k127_8283789_1 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.0000000000000000000000000000000000000000000000000000000000000000003363 237.0
BYDH3_k127_8283789_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000000000000003078 190.0
BYDH3_k127_8283789_3 Papain-like cysteine protease AvrRpt2 - - - 0.000000000000000000000000000000000000000000007607 167.0
BYDH3_k127_8283789_4 NfeD-like C-terminal, partner-binding - - - 0.000000000000000000000000000000000000001442 150.0
BYDH3_k127_8283789_5 Tetratricopeptide repeat - - - 0.00000000000000000000000000000004697 130.0
BYDH3_k127_8283789_6 - - - - 0.00000000000000000000000000001596 123.0
BYDH3_k127_8283789_7 ADP-ribosylglycohydrolase - - - 0.0008002 42.0
BYDH3_k127_8292355_0 Threonyl and Alanyl tRNA synthetase second additional domain K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.446e-253 797.0
BYDH3_k127_8292355_1 PFAM Aminotransferase, class I K00812 - 2.6.1.1 0.00000000000000000000001542 106.0
BYDH3_k127_8292355_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000005145 100.0
BYDH3_k127_8293135_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1125.0
BYDH3_k127_8293135_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 7.858e-230 727.0
BYDH3_k127_8293135_2 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000001179 140.0
BYDH3_k127_8293135_3 Hydrolases of the alpha beta superfamily K06889 - - 0.000000000000000000000000000000009174 136.0
BYDH3_k127_8293135_4 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.0000000000000000000000000000008648 131.0
BYDH3_k127_8294799_0 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 557.0
BYDH3_k127_8294799_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 427.0
BYDH3_k127_8294799_10 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000234 69.0
BYDH3_k127_8294799_2 Transcriptional regulator K03717 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003303 355.0
BYDH3_k127_8294799_3 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 301.0
BYDH3_k127_8294799_4 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000002472 140.0
BYDH3_k127_8294799_5 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000002353 132.0
BYDH3_k127_8294799_6 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000004137 109.0
BYDH3_k127_8294799_7 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000001002 94.0
BYDH3_k127_8294799_8 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000001098 81.0
BYDH3_k127_8294799_9 Bacterial regulatory proteins, tetR family - - - 0.0000000000000001509 80.0
BYDH3_k127_8300185_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 546.0
BYDH3_k127_8300185_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003458 453.0
BYDH3_k127_8300185_2 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006313 283.0
BYDH3_k127_8300185_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000647 286.0
BYDH3_k127_8300185_4 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000001649 273.0
BYDH3_k127_8300185_5 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000002106 176.0
BYDH3_k127_8300185_6 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000005066 148.0
BYDH3_k127_8300185_7 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.00005163 52.0
BYDH3_k127_8327757_0 Heat shock 70 kDa protein K04043 - - 2.183e-295 917.0
BYDH3_k127_8327757_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001926 251.0
BYDH3_k127_8327757_2 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000001905 246.0
BYDH3_k127_8327757_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.00000000000000000000000003381 115.0
BYDH3_k127_8327757_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000006566 92.0
BYDH3_k127_8327757_5 regulatory protein, FmdB family - - - 0.000000003869 62.0
BYDH3_k127_8327757_6 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000382 52.0
BYDH3_k127_8355506_0 pyridine nucleotide-disulphide oxidoreductase dimerisation K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000001406 229.0
BYDH3_k127_8355506_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000005106 138.0
BYDH3_k127_8355506_2 Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP- dependent clade X sub-subfamily K00850 - 2.7.1.11 0.000000000000000000000000000000638 124.0
BYDH3_k127_8355506_3 TIGRFAM Small GTP-binding protein K06883 - - 0.0000000000000000000000000000271 124.0
BYDH3_k127_8355506_4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.00000000000000000000001325 103.0
BYDH3_k127_8355506_5 alginic acid biosynthetic process - - - 0.00000000000000000003484 95.0
BYDH3_k127_8355506_6 Protein of unknown function (DUF1566) - - - 0.00000000000007701 83.0
BYDH3_k127_8355506_7 regulator of chromosome condensation, RCC1 - - - 0.000000002355 69.0
BYDH3_k127_8375259_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1365.0
BYDH3_k127_8375259_1 Formate dehydrogenase iron-sulfur subunit K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006072 407.0
BYDH3_k127_8375259_2 PFAM Molybdopterin oxidoreductase Fe4S4 region K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006591 301.0
BYDH3_k127_8375259_3 Prokaryotic cytochrome b561 K00127 - - 0.00000000000000000000000000000000000000000001528 169.0
BYDH3_k127_8375259_4 mRNA catabolic process K07025 - - 0.00000002972 57.0
BYDH3_k127_8386063_0 - - - - 8.508e-203 644.0
BYDH3_k127_8386063_1 - - - - 0.000000000000005105 81.0
BYDH3_k127_8386063_2 ABC transporter transmembrane region K06147 - - 0.0000001354 54.0
BYDH3_k127_842834_0 Proposed homoserine kinase K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 430.0
BYDH3_k127_842834_1 PFAM homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 288.0
BYDH3_k127_842834_2 amino acid-binding ACT domain protein K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000001172 212.0
BYDH3_k127_842834_3 Metal-dependent phosphohydrolase - - - 0.0000000000000000000000000884 113.0
BYDH3_k127_842834_4 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.00000000000000002815 83.0
BYDH3_k127_84537_0 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 427.0
BYDH3_k127_84537_1 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 340.0
BYDH3_k127_84537_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007756 307.0
BYDH3_k127_8458672_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 304.0
BYDH3_k127_8458672_1 Fungalysin metallopeptidase (M36) - - - 0.0000000000000000000000000000000000000000000000245 184.0
BYDH3_k127_8461562_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003275 475.0
BYDH3_k127_8461562_1 FCD K05799 - - 0.000000000000000000000000008339 119.0
BYDH3_k127_8462433_0 AAA domain (Cdc48 subfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 358.0
BYDH3_k127_8462433_1 PFAM response regulator receiver - - - 0.00000000000002869 74.0
BYDH3_k127_8488897_0 SMART Elongator protein 3 MiaB NifB K01012,K16180 - 2.8.1.6,5.4.99.58 0.0000000000000000000000000000000000000000000000000000000000000000000000001355 256.0
BYDH3_k127_8488897_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000003024 246.0
BYDH3_k127_8488897_2 Fumarase C C-terminus K01744 - 4.3.1.1 0.000001286 50.0
BYDH3_k127_8489222_0 FGGY family of carbohydrate kinases, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 375.0
BYDH3_k127_8558471_0 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007499 295.0
BYDH3_k127_8558471_1 oxidoreductase FAD NAD(P)-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000003971 244.0
BYDH3_k127_8558471_2 Low molecular weight phosphatase family - - - 0.00000000000000000000000000000000000000000000003785 173.0
BYDH3_k127_8558471_3 PFAM Endonuclease exonuclease phosphatase K01142 - 3.1.11.2 0.0000000000000000000000000000000000000001039 151.0
BYDH3_k127_8558471_4 Rubrerythrin - - - 0.000000000000002371 82.0
BYDH3_k127_8560186_0 Protein of unknown function (DUF2804) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 358.0
BYDH3_k127_8560186_1 molybdenum cofactor guanylyltransferase activity K03752,K13818 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.77 0.00000000000000000000000000000000000000000000001857 183.0
BYDH3_k127_8560186_2 PFAM Metal-dependent hydrolase HDOD - - - 0.000000000000000005441 93.0
BYDH3_k127_8560186_3 AzlC protein - - - 0.000000000001847 69.0
BYDH3_k127_8560186_4 His Kinase A (phosphoacceptor) domain - - - 0.0000691 53.0
BYDH3_k127_8565025_0 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006861 272.0
BYDH3_k127_8565025_1 - - - - 0.0000000000000000000000000000000000007377 145.0
BYDH3_k127_8565025_2 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.0000000000000000000000000000000001572 144.0
BYDH3_k127_8572154_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 341.0
BYDH3_k127_8572154_1 RNA polymerase sigma factor K03088 - - 0.00000000000000000000000000000000007283 140.0
BYDH3_k127_8572154_2 SprA-related family - - - 0.00000000000000005165 84.0
BYDH3_k127_8585183_0 PFAM response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000004789 226.0
BYDH3_k127_8585183_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000001091 215.0
BYDH3_k127_8585183_2 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000166 208.0
BYDH3_k127_8590427_0 Acyl-CoA dehydrogenase N terminal K09456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 572.0
BYDH3_k127_8590427_1 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000001593 201.0
BYDH3_k127_8590427_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000003199 164.0
BYDH3_k127_8599318_0 Sigma-54 interaction domain K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 310.0
BYDH3_k127_8599318_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000001584 223.0
BYDH3_k127_8614683_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 408.0
BYDH3_k127_8614683_1 Haemolysin-III related K11068 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 313.0
BYDH3_k127_8614683_2 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000669 250.0
BYDH3_k127_8614683_3 Uncharacterized protein conserved in bacteria (DUF2179) - - - 0.0000000000000000000000000000000000000000000000000000000167 203.0
BYDH3_k127_8614683_4 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000003505 185.0
BYDH3_k127_8614683_5 - - - - 0.00000000000000000002448 96.0
BYDH3_k127_8614683_6 ABC-type cobalt transport system, permease component K16925 - - 0.0000000000271 66.0
BYDH3_k127_8614683_7 Flavin containing amine oxidoreductase - - - 0.000042 52.0
BYDH3_k127_8616023_0 acetyl-CoA hydrolase transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 415.0
BYDH3_k127_8630658_0 MgsA AAA+ ATPase C terminal K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008181 387.0
BYDH3_k127_8630658_1 UTP--glucose-1-phosphate uridylyltransferase K00972,K12447 - 2.7.7.23,2.7.7.64,2.7.7.83 0.00000000000000000000000000000000000000000000000000000000000133 219.0
BYDH3_k127_8630658_2 - - - - 0.00000001316 55.0
BYDH3_k127_863459_0 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 318.0
BYDH3_k127_863459_1 PFAM response regulator receiver K07657,K07663 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001916 264.0
BYDH3_k127_8643955_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004373 336.0
BYDH3_k127_8643955_1 Enoyl-CoA hydratase/isomerase K13767,K13816 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000003113 231.0
BYDH3_k127_8643955_2 AMP-binding enzyme C-terminal domain K00666 - - 0.0000000000000000000000000003637 117.0
BYDH3_k127_865002_0 Sigma-54 interaction domain K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005358 369.0
BYDH3_k127_865002_1 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000002667 54.0
BYDH3_k127_8654611_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 422.0
BYDH3_k127_8654611_1 PFAM SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000003598 238.0
BYDH3_k127_8654611_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.00000000000000000000000000000000005582 143.0
BYDH3_k127_8654611_3 Binds to the 23S rRNA K02939 - - 0.0000000000000000000000000006349 116.0
BYDH3_k127_8654611_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557,K03215 GO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0019843,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363 2.1.1.190,2.1.1.35 0.000000000000000000000002836 106.0
BYDH3_k127_8670704_0 RNA binding S1 domain protein K06959 - - 5.093e-279 874.0
BYDH3_k127_8670704_1 Thrombospondin type 3 repeat - - - 0.00000000000000000000000000000000000000000000000000000009479 204.0
BYDH3_k127_8670704_2 oxidoreductase activity K11089 - - 0.000000000000000000000000000000000000000000007435 182.0
BYDH3_k127_8670704_3 Tetratricopeptide repeat - - - 0.000000000000005652 89.0
BYDH3_k127_8670704_4 Pkd domain containing protein - - - 0.00000001348 67.0
BYDH3_k127_8671202_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 423.0
BYDH3_k127_8671202_1 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 336.0
BYDH3_k127_8671202_2 Aminoglycoside phosphotransferase - - - 0.000004425 49.0
BYDH3_k127_8675165_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.000000000000000000000000000000000001248 147.0
BYDH3_k127_8675165_1 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000000000000000000000004027 133.0
BYDH3_k127_8679707_0 extracellular matrix structural constituent - - - 0.000000000000000000000000000000000000000000000000000000000000001067 234.0
BYDH3_k127_8679707_1 extracellular matrix structural constituent - - - 0.00000000000000000000000000000000000002221 151.0
BYDH3_k127_8679707_2 hydrophobe amphiphile efflux-3 (HAE3) family K07003 - - 0.00000000000000000000001263 104.0
BYDH3_k127_8701340_0 TIGRFAM anaerobic ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 2.839e-291 903.0
BYDH3_k127_8701340_1 PFAM AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 480.0
BYDH3_k127_8701340_2 TIGRFAM anaerobic ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 0.00000000000000000000000000000000000000000002621 164.0
BYDH3_k127_8701340_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000004 147.0
BYDH3_k127_8702942_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007188 377.0
BYDH3_k127_8702942_1 Domain of unknown function (DUF4105) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 359.0
BYDH3_k127_8702942_2 Prolyl oligopeptidase family K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007013 258.0
BYDH3_k127_8702942_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.00000000000006611 76.0
BYDH3_k127_8702942_5 Sterol carrier protein - - - 0.0001369 51.0
BYDH3_k127_8705956_0 ABC-type branched-chain amino acid transport systems, periplasmic component K01997,K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 438.0
BYDH3_k127_8705956_1 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 420.0
BYDH3_k127_8705956_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 417.0
BYDH3_k127_8705956_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002949 324.0
BYDH3_k127_8705956_4 Acyl-CoA dehydrogenase type 2 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000576 228.0
BYDH3_k127_8705956_5 Abc transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000657 197.0
BYDH3_k127_8705956_6 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000002836 202.0
BYDH3_k127_8705956_7 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000008957 83.0
BYDH3_k127_8713933_0 Flavodoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 473.0
BYDH3_k127_8713933_1 Protein of unknown function (DUF2400) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002636 273.0
BYDH3_k127_8713933_2 PFAM Desulfoferrodoxin ferrous iron-binding region K05919 - 1.15.1.2 0.000000000000000000000000000000000000000000000000000000000000000003703 227.0
BYDH3_k127_8713933_3 Ferritin-like domain K02217 - 1.16.3.2 0.0000000000000000000000000000000000000000000000000000000000002911 215.0
BYDH3_k127_8713933_4 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000007205 182.0
BYDH3_k127_8713933_5 PFAM Rubrerythrin - - - 0.00000000000000000000000000000000000000009963 156.0
BYDH3_k127_8713933_6 PFAM Rubredoxin-type Fe(Cys)4 protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000008353 101.0
BYDH3_k127_8713933_7 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000007025 90.0
BYDH3_k127_8716911_0 molybdopterin oxidoreductase Fe4S4 region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007114 490.0
BYDH3_k127_8728244_0 General secretion pathway protein F K02455,K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 358.0
BYDH3_k127_8728244_1 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000006298 184.0
BYDH3_k127_8728244_2 Prokaryotic N-terminal methylation motif - - - 0.0000005568 59.0
BYDH3_k127_8728322_0 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008354 298.0
BYDH3_k127_8728322_1 Alpha beta hydrolase K14731 - 3.1.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000001228 258.0
BYDH3_k127_8728322_2 Predicted membrane protein (DUF2177) - - - 0.00000000000000000000000000000000000000000000000000001857 190.0
BYDH3_k127_8728322_3 Serine aminopeptidase, S33 - - - 0.0000000000002491 70.0
BYDH3_k127_8728322_4 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.0000000000002662 72.0
BYDH3_k127_8749670_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.979e-206 646.0
BYDH3_k127_8749670_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000007394 106.0
BYDH3_k127_8749670_2 PFAM IstB domain protein ATP-binding protein - - - 0.000002617 53.0
BYDH3_k127_8758857_0 Threonine synthase K01733 - 4.2.3.1 1.276e-195 619.0
BYDH3_k127_8758857_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008779 557.0
BYDH3_k127_8758857_2 PFAM SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000658 368.0
BYDH3_k127_8758857_3 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000004576 268.0
BYDH3_k127_8758857_4 NUDIX domain - - - 0.00000000000000000000000000000000000002508 153.0
BYDH3_k127_8758937_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052,K07246 - 1.1.1.83,1.1.1.85,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009423 533.0
BYDH3_k127_8758937_1 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 295.0
BYDH3_k127_8758937_2 Beta-lactamase superfamily domain K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000004163 256.0
BYDH3_k127_8765494_0 Iron-sulfur cluster-binding domain K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 424.0
BYDH3_k127_8765494_1 Putative MetA-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000002216 229.0
BYDH3_k127_8855919_0 ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 341.0
BYDH3_k127_8855919_1 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000000000000000000000000007011 154.0
BYDH3_k127_8855919_2 sulfur carrier activity - - - 0.0000000000000000000000002284 106.0
BYDH3_k127_886118_0 belongs to the aspartokinase family K12524,K12525 GO:0003674,GO:0003824,GO:0004072,GO:0004412,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.3,2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 368.0
BYDH3_k127_886118_1 PFAM ATP-binding region, ATPase domain protein K17752 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000003862 214.0
BYDH3_k127_886118_2 PFAM DRTGG domain - - - 0.0000000000000000000000000002806 117.0
BYDH3_k127_8865539_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006969 558.0
BYDH3_k127_8865539_1 aldehyde ferredoxin oxidoreductase activity K03738,K11389 - 1.2.7.5,1.2.7.6 0.000000000004158 66.0
BYDH3_k127_8922659_0 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000002526 226.0
BYDH3_k127_8922659_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000001386 229.0
BYDH3_k127_8922659_2 Domain of unknown function (DUF4143) K07133 - - 0.00007105 46.0
BYDH3_k127_8930711_0 Endopeptidase La K04076 - 3.4.21.53 6.223e-226 718.0
BYDH3_k127_8934537_0 Peptidase U62 modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 461.0
BYDH3_k127_8934537_1 Peptidase family S49 K04773 - - 0.00000000000000002458 87.0
BYDH3_k127_8942323_0 Molybdopterin oxidoreductase, Fe4S4 K00123 - 1.17.1.9 2.343e-229 721.0
BYDH3_k127_8942323_1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B K00528 - 1.18.1.2,1.19.1.1 0.00000000008953 62.0
BYDH3_k127_8963552_0 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003643 399.0
BYDH3_k127_8963552_1 Histidine kinase K00936,K07315 - 2.7.13.3,3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000005828 237.0
BYDH3_k127_8963552_2 Bacterial transcriptional repressor C-terminal K16137 - - 0.000000000000000000000000000000000000000000000000001537 189.0
BYDH3_k127_8972835_0 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003961 395.0
BYDH3_k127_8972835_1 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008345 336.0
BYDH3_k127_8972835_2 methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000001554 175.0
BYDH3_k127_8974550_0 PAS fold - - - 0.0000000000000000000000000000000000000000000002187 182.0
BYDH3_k127_8974550_1 SH3 type 3 domain protein K01447 - 3.5.1.28 0.0000000000000000000000000006678 123.0
BYDH3_k127_8995014_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000002546 231.0
BYDH3_k127_8995014_1 Flavodoxin domain - - - 0.00000000000001548 82.0
BYDH3_k127_8995014_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000004533 55.0
BYDH3_k127_9009769_0 PFAM Histone deacetylase K04768 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 578.0
BYDH3_k127_9009769_1 PFAM Hydantoinase oxoprolinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 400.0
BYDH3_k127_9009769_2 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000426 193.0
BYDH3_k127_9010554_0 dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 331.0
BYDH3_k127_9010554_1 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000001684 218.0
BYDH3_k127_9011340_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 456.0
BYDH3_k127_9011340_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000777 453.0
BYDH3_k127_9011340_2 Histidinol dehydrogenase K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 451.0
BYDH3_k127_9011340_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.00000000000000000000000000000000000000000000000000001176 199.0
BYDH3_k127_9011340_4 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000002448 189.0
BYDH3_k127_9011340_5 Histidine kinase K03320,K03406,K03407,K07315 - 2.7.13.3,3.1.3.3 0.000000000000000000000000000000000000000000001456 176.0
BYDH3_k127_9011340_6 Poly A polymerase, head domain K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000004916 177.0
BYDH3_k127_9011340_7 50S ribosomal protein L31 K02909 - - 0.000000000000000000000001685 104.0
BYDH3_k127_9022698_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 3.624e-264 836.0
BYDH3_k127_9022698_1 PFAM Acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 505.0
BYDH3_k127_9022698_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 411.0
BYDH3_k127_9022698_3 Glycerate kinase K11529 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016661,GO:0016662,GO:0016740,GO:0016772,GO:0043798,GO:0044237,GO:0055114 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 361.0
BYDH3_k127_9022698_4 Conserved protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002073 240.0
BYDH3_k127_9022698_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000004853 227.0
BYDH3_k127_9022698_6 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00018 - 1.1.1.29 0.00000000000000000000000000000000000000000000000000000000001577 218.0
BYDH3_k127_9022698_7 Putative prokaryotic signal transducing protein - - - 0.000000000000000000000004697 104.0
BYDH3_k127_9022698_8 Oxidoreductase - - - 0.000001117 52.0
BYDH3_k127_9026086_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 290.0
BYDH3_k127_9026086_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000018 202.0
BYDH3_k127_9026086_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000001961 207.0
BYDH3_k127_9026086_3 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000007443 57.0
BYDH3_k127_9033176_0 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 531.0
BYDH3_k127_9033176_1 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.000000000000000000000000000000000000000000000000000000000000003048 220.0
BYDH3_k127_905007_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 509.0
BYDH3_k127_905007_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 367.0
BYDH3_k127_905007_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.000000000000000000000000002168 112.0
BYDH3_k127_905007_3 TIGRFAM preprotein translocase, YajC subunit K03210 - - 0.000000000000000000000000003996 114.0
BYDH3_k127_9062960_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.949e-222 703.0
BYDH3_k127_9062960_1 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 331.0
BYDH3_k127_9062960_2 COG0564 Pseudouridylate synthases, 23S RNA-specific K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000003624 269.0
BYDH3_k127_9062960_3 PKD domain - - - 0.00008775 46.0
BYDH3_k127_9082417_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00282 GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006807,GO:0008150,GO:0008152,GO:0009069,GO:0009987,GO:0016491,GO:0016638,GO:0016642,GO:0017144,GO:0019752,GO:0032991,GO:0042133,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901605,GO:1902494,GO:1990204 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 376.0
BYDH3_k127_9082417_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 354.0
BYDH3_k127_9082417_2 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 304.0
BYDH3_k127_9082417_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001042 287.0
BYDH3_k127_9082417_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000002078 164.0
BYDH3_k127_9082417_5 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 - - 0.0000000000000000000000000000000000001149 145.0
BYDH3_k127_910531_0 Protein of unknown function (DUF933) K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003457 320.0
BYDH3_k127_910531_1 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000002931 63.0
BYDH3_k127_910531_2 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0000921,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0030428,GO:0031106,GO:0032153,GO:0032185,GO:0032505,GO:0032506,GO:0034622,GO:0042802,GO:0043093,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0065003,GO:0070925,GO:0071840,GO:0090529,GO:1902410,GO:1903047 - 0.000008203 51.0
BYDH3_k127_910531_3 PFAM GGDEF domain containing protein - - - 0.00001301 54.0
BYDH3_k127_9121352_0 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 494.0
BYDH3_k127_9121352_1 AMMECR1 K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009825 473.0
BYDH3_k127_9121352_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 292.0
BYDH3_k127_9121352_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000005163 260.0
BYDH3_k127_9121352_4 cheY-homologous receiver domain - - - 0.0000000000000000000002033 100.0
BYDH3_k127_9123260_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000008463 207.0
BYDH3_k127_9123260_1 Jag_N K06346 - - 0.000000000000000000000000000000000000000006825 164.0
BYDH3_k127_9123260_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000007192 132.0
BYDH3_k127_9127825_0 Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 498.0
BYDH3_k127_9127825_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 321.0
BYDH3_k127_9168610_0 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000004464 251.0
BYDH3_k127_9168610_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000004369 187.0
BYDH3_k127_9168610_2 Radical SAM - - - 0.000000000000000000000000000000000000000000001145 173.0
BYDH3_k127_9168610_3 TonB C terminal K03832 - - 0.00000000009088 69.0
BYDH3_k127_9182642_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 477.0
BYDH3_k127_9182642_1 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005624 410.0
BYDH3_k127_9182642_2 Histone deacetylase domain K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 292.0
BYDH3_k127_9182642_3 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000004751 149.0
BYDH3_k127_9182642_4 Domain of unknown function (DUF1844) - - - 0.00000000000000001434 87.0
BYDH3_k127_9185781_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 4.908e-230 718.0
BYDH3_k127_9185781_1 Mate efflux family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 498.0
BYDH3_k127_9185781_2 Carbon starvation protein K06200 - - 0.000000000000000000000000000000000000000000000006914 177.0
BYDH3_k127_9193855_0 Peptidase dimerisation domain K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009 373.0
BYDH3_k127_9193855_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000003062 198.0
BYDH3_k127_9193855_2 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000105 113.0
BYDH3_k127_9199534_0 Molydopterin dinucleotide binding domain K00123,K05299 - 1.17.1.10,1.17.1.9 1.976e-203 646.0
BYDH3_k127_9199534_1 Oxidoreductase NAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001515 286.0
BYDH3_k127_9199534_2 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002367 265.0
BYDH3_k127_9199534_3 Sulfite reductase, subunit A - - - 0.000000000000000000000000000000000000000000000000000001579 204.0
BYDH3_k127_9199534_4 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000001869 178.0
BYDH3_k127_9199534_5 phosphorelay signal transduction system - - - 0.0000000000000000000000007207 108.0
BYDH3_k127_9233501_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K07812 - 1.7.2.3 8.359e-281 869.0
BYDH3_k127_9241563_0 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 367.0
BYDH3_k127_9241563_1 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 338.0
BYDH3_k127_9241563_2 Zinc dependent phospholipase C - - - 0.00000000000000006763 91.0
BYDH3_k127_9281962_0 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 406.0
BYDH3_k127_9281962_1 DHH family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001016 281.0
BYDH3_k127_9281962_2 Subtilase family K01341 - 3.4.21.61 0.0000000000000000000000000000000000000000000000006352 189.0
BYDH3_k127_9281962_3 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000000000003604 150.0
BYDH3_k127_9284067_0 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 529.0
BYDH3_k127_9284067_1 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000000000005626 160.0
BYDH3_k127_9292240_0 belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 1.614e-307 965.0
BYDH3_k127_9292240_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 595.0
BYDH3_k127_9292240_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000001901 213.0
BYDH3_k127_9292240_3 Acetoacetate decarboxylase (ADC) - - - 0.0000000000000000000000000000000000000000000000001095 187.0
BYDH3_k127_9292240_4 Alkyl sulfatase dimerisation - - - 0.00000000000000000000000000000000000000004213 158.0
BYDH3_k127_9298414_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003627 379.0
BYDH3_k127_9298414_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006367 368.0
BYDH3_k127_9298414_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006433 309.0
BYDH3_k127_9298414_3 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005964 285.0
BYDH3_k127_9298414_4 radical SAM domain protein K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000006804 247.0
BYDH3_k127_9298414_5 phosphate transport regulator (Distant homolog of PhoU) K07220 - - 0.0000000000000000000000000000000000000000000000001229 184.0
BYDH3_k127_9298414_6 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000002357 166.0
BYDH3_k127_9312939_0 Pyridoxal-phosphate dependent enzyme K01738,K01883,K12339 - 2.5.1.47,6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 394.0
BYDH3_k127_9312939_1 Binding-protein-dependent transport system inner membrane component K02029,K10003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006659 336.0
BYDH3_k127_9312939_2 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029,K10002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 332.0
BYDH3_k127_9312939_3 Methylase involved in ubiquinone menaquinone biosynthesis K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000181 201.0
BYDH3_k127_9312939_4 Nucleoside recognition - - - 0.000000000000000000000000000000000000000002931 167.0
BYDH3_k127_932200_0 PFAM 2-nitropropane dioxygenase NPD - - - 0.000000000000000000000000000000000000000000000000000000000000000002137 231.0
BYDH3_k127_932200_1 depolymerase K03932 - - 0.0004131 51.0
BYDH3_k127_9347673_0 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003903 281.0
BYDH3_k127_9347673_1 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000002345 221.0
BYDH3_k127_9347673_2 - - - - 0.0000000000001857 81.0
BYDH3_k127_9347673_3 SdrD B-like domain - - - 0.000001063 55.0
BYDH3_k127_9372770_0 Glycosyltransferase like family 2 K00786,K16555,K19354 GO:0003674,GO:0003824,GO:0005575,GO:0006950,GO:0007154,GO:0008150,GO:0008194,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015020,GO:0016020,GO:0016036,GO:0016740,GO:0016757,GO:0016758,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0050896,GO:0051716,GO:0071496 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002321 291.0
BYDH3_k127_9372770_1 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000002932 149.0
BYDH3_k127_9390658_0 Branched-chain amino acid transport system / permease component K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 381.0
BYDH3_k127_9390658_1 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 381.0
BYDH3_k127_9390658_2 HlyD family secretion protein K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005734 365.0
BYDH3_k127_9390658_3 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001636 249.0
BYDH3_k127_9390658_4 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000005292 179.0
BYDH3_k127_9390658_5 PFAM ABC transporter K01990,K01992,K09695 - - 0.00000000000000000000000001417 109.0
BYDH3_k127_9390658_6 ABC transporter K02056 - 3.6.3.17 0.000000000009172 66.0
BYDH3_k127_9402182_0 E1-E2 ATPase K17686 - 3.6.3.54 9.846e-204 646.0
BYDH3_k127_9402182_1 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000007804 200.0
BYDH3_k127_9402182_2 TPM domain - - - 0.00000000000000000000000000000000000000000000002821 181.0
BYDH3_k127_9402182_3 nucleotidyltransferase activity - - - 0.0000000000000000000001753 108.0
BYDH3_k127_9402182_4 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.0000000000000000000271 91.0
BYDH3_k127_9408106_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 601.0
BYDH3_k127_9408106_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000002084 205.0
BYDH3_k127_9408106_2 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000001098 105.0
BYDH3_k127_9409387_0 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000000003438 236.0
BYDH3_k127_9409387_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000005224 201.0
BYDH3_k127_9409387_2 metal-dependent phosphohydrolase HD - - - 0.00000000000000000000000000000000003516 142.0
BYDH3_k127_9409387_3 Domain of unknown function (DUF4388) - - - 0.00000000000003349 84.0
BYDH3_k127_9443415_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840,K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000389 455.0
BYDH3_k127_9443415_1 Predicted Permease Membrane Region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003113 420.0
BYDH3_k127_9443415_2 Belongs to the UPF0597 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 381.0
BYDH3_k127_9443415_3 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.0000000000000000000000000000000000000000001217 172.0
BYDH3_k127_9443415_4 HD domain - - - 0.0000000000000000000000000000000698 127.0
BYDH3_k127_9443415_5 Ion channel - - - 0.00000000000000000000001452 109.0
BYDH3_k127_9445444_0 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003696 366.0
BYDH3_k127_9445444_1 exodeoxyribonuclease VII activity K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000004848 220.0
BYDH3_k127_9445444_2 Belongs to the enoyl-CoA hydratase isomerase family K01715,K13766,K13767 - 4.2.1.17,4.2.1.18 0.00000000000003954 77.0
BYDH3_k127_9445444_3 Exonuclease VII small subunit K03602 - 3.1.11.6 0.00000001436 58.0
BYDH3_k127_9468150_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 348.0
BYDH3_k127_9468150_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.0000000000000000000000000000000001146 143.0
BYDH3_k127_9468150_2 two component, sigma54 specific, transcriptional regulator K02481 - - 0.0000000000000000000000000006929 116.0
BYDH3_k127_9468150_3 GtrA-like protein - - - 0.000000000000005657 81.0
BYDH3_k127_9473229_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 438.0
BYDH3_k127_9473229_1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.0000000000000000002532 91.0
BYDH3_k127_9481289_0 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 451.0
BYDH3_k127_952560_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000001421 207.0
BYDH3_k127_952560_1 Transcriptional regulator - - - 0.000000000000000000000000000000000000000007575 162.0
BYDH3_k127_952560_2 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000000000308 106.0
BYDH3_k127_952560_3 4Fe-4S dicluster domain K08264 - 1.8.98.1 0.0000000000001013 82.0
BYDH3_k127_9531972_0 PFAM Radical SAM domain protein K22226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 564.0
BYDH3_k127_9531972_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 384.0
BYDH3_k127_9531972_2 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000002766 248.0
BYDH3_k127_9531972_3 histidine kinase HAMP region domain protein K03406 - - 0.000000000000000000000000000000000000000000000000000003914 210.0
BYDH3_k127_9531972_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000003986 128.0
BYDH3_k127_9531972_5 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000005673 114.0
BYDH3_k127_9537110_0 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000004913 241.0
BYDH3_k127_9537110_1 Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000001659 194.0
BYDH3_k127_9537110_2 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000465 151.0
BYDH3_k127_9579974_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.421e-219 691.0
BYDH3_k127_9579974_1 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 298.0
BYDH3_k127_9579974_2 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000004823 232.0
BYDH3_k127_9579974_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000007253 192.0
BYDH3_k127_9585177_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 288.0
BYDH3_k127_9585177_1 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003234 266.0
BYDH3_k127_9585177_2 PFAM GTP-binding signal recognition particle SRP54 G- domain K02404 - - 0.00000000000000000000000000000000000000000000000000007477 199.0
BYDH3_k127_9585177_3 Sigma-70, region 4 K02405 - - 0.0000000000000000000000000000000000000000000000000000832 192.0
BYDH3_k127_9588615_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000004647 173.0
BYDH3_k127_9588615_1 PhoD-like phosphatase K01113 - 3.1.3.1 0.000000000000001962 84.0
BYDH3_k127_9627523_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000006936 160.0
BYDH3_k127_9633462_0 Acyl-CoA dehydrogenase N terminal K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008563 536.0
BYDH3_k127_9653672_0 - - - - 0.0000000000000000000000000000000000000000000000000000000002014 214.0
BYDH3_k127_9653672_1 4Fe-4S dicluster domain K00113 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000006434 214.0
BYDH3_k127_9653672_2 - - - - 0.0000005074 56.0
BYDH3_k127_9655852_0 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003497 348.0
BYDH3_k127_9655852_1 Acetyl-CoA hydrolase/transferase N-terminal domain - - - 0.00000000000000000000000000000000000000000005905 161.0
BYDH3_k127_9655852_2 - - - - 0.00000000000000000000000000000000000001907 144.0
BYDH3_k127_9659186_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 9.23e-277 868.0
BYDH3_k127_9659186_1 - - - - 0.00000000000000000000000000000000000000000000000007778 182.0
BYDH3_k127_9672794_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 448.0
BYDH3_k127_9672794_1 COGs COG0318 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 437.0
BYDH3_k127_9672794_2 TIGRFAM N-acetyl sugar amidotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003834 270.0
BYDH3_k127_9672794_3 Phosphopantetheine attachment site - - - 0.0000000000000000007539 88.0
BYDH3_k127_9684417_0 biotin carboxylase activity K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005188 412.0
BYDH3_k127_9684417_1 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 331.0
BYDH3_k127_9684417_2 AIR synthase related protein, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 309.0
BYDH3_k127_9684417_3 PFAM 6-pyruvoyl tetrahydropterin synthase and K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000004191 142.0
BYDH3_k127_9685051_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 388.0
BYDH3_k127_9685051_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 341.0
BYDH3_k127_9685051_2 - K01865 - 5.4.4.1 0.000000209 54.0
BYDH3_k127_9719437_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 423.0
BYDH3_k127_9719437_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000008704 222.0
BYDH3_k127_9764812_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 375.0
BYDH3_k127_9764812_1 Penicillin-binding Protein - - - 0.00000000000000000000000000000000000000000000000000000000008688 220.0
BYDH3_k127_9767725_0 response regulator, receiver K03413 - - 0.000000000000000000000000000000000000000000000000000003489 192.0
BYDH3_k127_9767725_1 PBS lyase HEAT domain protein repeat-containing protein - - - 0.000000000000000000000000000000000000002138 159.0
BYDH3_k127_9770103_0 Permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000008947 239.0
BYDH3_k127_9770103_1 DGC domain protein - - - 0.0000000000000000000000000000000000000000001335 164.0
BYDH3_k127_9770103_2 Thioredoxin K03671 - - 0.000000000000000000000000000000000001369 142.0
BYDH3_k127_9770103_3 Thioredoxin domain - - - 0.000000000000000000000001389 106.0
BYDH3_k127_9770103_4 PFAM Cytochrome C biogenesis protein transmembrane region K06196 - - 0.000000002192 58.0
BYDH3_k127_9782283_0 Insulinase (Peptidase family M16) K07263 - - 7.609e-281 889.0
BYDH3_k127_9782283_1 Acyl-CoA dehydrogenase N terminal K09456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 584.0
BYDH3_k127_9782283_2 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 563.0
BYDH3_k127_9782283_3 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 407.0
BYDH3_k127_9782283_4 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 399.0
BYDH3_k127_9782283_5 PFAM response regulator receiver K11384 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 322.0
BYDH3_k127_9782283_6 PFAM response regulator receiver K11384 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 292.0
BYDH3_k127_9782283_7 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001548 284.0
BYDH3_k127_9803282_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005781 503.0
BYDH3_k127_9803282_1 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009458 291.0
BYDH3_k127_9803282_2 Thiolase, C-terminal domain K00626,K00632 - 2.3.1.16,2.3.1.9 0.00000000000000009258 81.0
BYDH3_k127_9909266_0 regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000001859 174.0
BYDH3_k127_9920642_0 sulfatase K01130 - 3.1.6.1 7.422e-241 752.0
BYDH3_k127_9934954_0 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000003847 162.0
BYDH3_k127_9934954_1 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 0.00000000000000000000000000000001636 127.0
BYDH3_k127_9958103_0 type III restriction protein res subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006495 403.0
BYDH3_k127_9958103_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000000001869 189.0
BYDH3_k127_9973527_0 Cache domain - - - 3.803e-240 759.0
BYDH3_k127_9973527_1 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 578.0
BYDH3_k127_9973527_10 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005618 279.0
BYDH3_k127_9973527_11 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000973 275.0
BYDH3_k127_9973527_12 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950,K13940 - 2.7.6.3,4.1.2.25 0.0000000000000000000000000000000001265 138.0
BYDH3_k127_9973527_13 positive regulation of growth rate K02453 - - 0.00000000000000000007599 94.0
BYDH3_k127_9973527_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 556.0
BYDH3_k127_9973527_3 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009627 522.0
BYDH3_k127_9973527_4 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009495 522.0
BYDH3_k127_9973527_5 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 396.0
BYDH3_k127_9973527_6 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 367.0
BYDH3_k127_9973527_7 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 348.0
BYDH3_k127_9973527_8 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 333.0
BYDH3_k127_9973527_9 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 338.0
BYDH3_k127_9987808_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000694 391.0
BYDH3_k127_9987808_1 CoA binding domain K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 323.0
BYDH3_k127_9987808_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000001647 232.0
BYDH3_k127_9987808_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000000000000001559 128.0
BYDH3_k127_9987808_4 Ribosomal L27 protein K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000001326 125.0