Overview

ID MAG00180
Name BYDH3_bin.11
Sample SMP0006
Taxonomy
Kingdom Bacteria
Phylum Patescibacteriota
Class Minisyncoccia
Order UBA9973
Family UBA6899
Genus MHLP01
Species
Assembly information
Completeness (%) 77.8
Contamination (%) 0.8
GC content (%) 51.0
N50 (bp) 5,016
Genome size (bp) 967,690

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes781

Gene name Description KEGG GOs EC E-value Score Sequence
BYDH3_k127_10077754_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000545 155.0
BYDH3_k127_10077754_1 SpoU rRNA Methylase family - - - 0.000000000000000000000000000000000002865 143.0
BYDH3_k127_10239097_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K09698 - 6.1.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 312.0
BYDH3_k127_10239097_1 Belongs to the SEDS family K03588 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000001141 253.0
BYDH3_k127_10239097_2 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000001321 214.0
BYDH3_k127_10239097_3 PFAM Peptidase M23 K21471 - - 0.000000000000000000002517 108.0
BYDH3_k127_10252004_0 Elongation factor G C-terminus K06207 GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 349.0
BYDH3_k127_10252004_1 Elongation factor G C-terminus K06207 GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003425 280.0
BYDH3_k127_10252004_2 ribokinase activity K00852 GO:0003674,GO:0003824,GO:0004747,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0046835,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 2.7.1.15 0.0000003115 62.0
BYDH3_k127_10252004_3 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0001057 49.0
BYDH3_k127_10253457_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000003057 80.0
BYDH3_k127_10273157_0 GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 559.0
BYDH3_k127_10273157_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007745 446.0
BYDH3_k127_10273157_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000009223 195.0
BYDH3_k127_10273157_3 - - - - 0.0000000000000000000000000000000000000000000117 168.0
BYDH3_k127_10273157_4 50S ribosomal protein L4 K02926 - - 0.0000000000000000000000000000000001317 138.0
BYDH3_k127_10273157_5 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001785 133.0
BYDH3_k127_10346243_0 S-adenosylhomocysteine deaminase activity K01485 - 3.5.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007616 286.0
BYDH3_k127_10346243_1 HupF/HypC family K04653 - - 0.000000003769 61.0
BYDH3_k127_10346243_2 Heavy-metal-associated domain - - - 0.00001192 52.0
BYDH3_k127_10346243_3 cytochrome c biogenesis protein, transmembrane region K06196 - - 0.00002858 56.0
BYDH3_k127_10346243_4 Cupredoxin-like domain - - - 0.0001227 51.0
BYDH3_k127_10495832_0 Methyltransferase type 11 K20444 - - 0.00000000000000000000000000000000000000000001741 168.0
BYDH3_k127_10495832_1 Polysaccharide deacetylase - - - 0.000000000000000000000000000000008835 138.0
BYDH3_k127_10495832_2 PFAM Methyltransferase type 11 - - - 0.00000000002232 71.0
BYDH3_k127_10563915_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 1.423e-197 626.0
BYDH3_k127_10563915_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000001226 206.0
BYDH3_k127_10563915_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000002079 64.0
BYDH3_k127_10563915_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 0.0003338 46.0
BYDH3_k127_10585545_0 nucleotide-excision repair K03702,K08999 - - 3.367e-244 773.0
BYDH3_k127_10585545_1 Glycoside Hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 546.0
BYDH3_k127_10585545_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005121 449.0
BYDH3_k127_10585545_3 ROK family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000002556 221.0
BYDH3_k127_10585545_4 Belongs to the GPI family K01810 GO:0003674,GO:0003824,GO:0004347,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000006172 222.0
BYDH3_k127_10585545_5 FIST C domain - - - 0.00000000000000000000000000000000000000000000000000524 196.0
BYDH3_k127_10594148_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 482.0
BYDH3_k127_10594148_1 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005349 259.0
BYDH3_k127_10594148_2 translation release factor activity K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000006665 248.0
BYDH3_k127_10594148_3 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.00000000000000000000000000000000983 139.0
BYDH3_k127_10594148_4 methyltransferase K16868 - 2.1.1.265 0.00000000000001292 83.0
BYDH3_k127_10694242_0 Peptidase family M3 K01414 - 3.4.24.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009719 433.0
BYDH3_k127_10694242_1 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000005333 170.0
BYDH3_k127_10707751_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1129.0
BYDH3_k127_10707751_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 6.282e-207 659.0
BYDH3_k127_10724261_0 Alkyl hydroperoxide reductase K03387 - - 0.000000000000000000000000000000000000000000000000000000000000000002627 237.0
BYDH3_k127_10724261_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0000910,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0022607,GO:0032153,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0051258,GO:0051301,GO:0065003,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000002896 175.0
BYDH3_k127_10724261_2 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0050896,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000001341 68.0
BYDH3_k127_11004755_0 - K01278,K03561 - 3.4.14.5 0.00000000000000000000000000000000000005079 150.0
BYDH3_k127_11004755_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000004624 114.0
BYDH3_k127_11004755_2 conserved protein (DUF2132) - - - 0.0000000000000000000003745 98.0
BYDH3_k127_11004755_3 NUDIX domain - - - 0.000000002433 64.0
BYDH3_k127_11015783_0 - - - - 0.000000000000000000000000000000000000000000000000000001262 200.0
BYDH3_k127_11015783_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000239 161.0
BYDH3_k127_11093850_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 419.0
BYDH3_k127_11093850_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000001297 78.0
BYDH3_k127_11093850_2 Protease prsW family - - - 0.000000000006424 75.0
BYDH3_k127_11096592_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002916 269.0
BYDH3_k127_11096592_1 Uncharacterised protein family (UPF0160) - - - 0.0000000000000000000000000000000000000000000000000006589 193.0
BYDH3_k127_11096592_2 Serine hydrolase K07002 - - 0.000000000000000000000000000000000006644 143.0
BYDH3_k127_11218367_0 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004313 325.0
BYDH3_k127_11218367_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000001297 180.0
BYDH3_k127_11218367_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.00000000000000000000005197 111.0
BYDH3_k127_11218367_3 Peptidase C26 K07010 - - 0.000002799 53.0
BYDH3_k127_11282613_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 314.0
BYDH3_k127_11282613_1 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000006364 84.0
BYDH3_k127_11325746_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567,K04568 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 441.0
BYDH3_k127_11325746_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000001818 125.0
BYDH3_k127_11325746_2 Penicillin-binding Protein K05515 - 3.4.16.4 0.00000000000000000872 90.0
BYDH3_k127_11353407_0 bacterial-type flagellum-dependent cell motility K13276 - - 0.00000000000000000000000001738 128.0
BYDH3_k127_11353407_1 Transposase IS200 like - - - 0.00000000000000000000001289 109.0
BYDH3_k127_11353407_2 von Willebrand factor type A domain K07114 - - 0.00000000008354 76.0
BYDH3_k127_1140249_0 alpha amylase catalytic K01182,K05343 - 3.2.1.1,3.2.1.10,5.4.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001166 281.0
BYDH3_k127_1140249_1 PFAM glutaredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007404 266.0
BYDH3_k127_1140249_2 RNHCP domain - - - 0.0000000000000000000000000001726 117.0
BYDH3_k127_11507391_0 Domain of unknown function (DUF4105) - - - 0.000000000000000000000000000000000000000009268 159.0
BYDH3_k127_11507391_1 Thioredoxin K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.000000000000000000000000000001351 124.0
BYDH3_k127_11507391_2 Phosphoribosyl transferase domain K02242 - - 0.000000000000000001535 93.0
BYDH3_k127_11507391_3 Glutaredoxin - - - 0.00000000000001725 77.0
BYDH3_k127_11507391_4 Helix-turn-helix domain K21903 - - 0.0004119 48.0
BYDH3_k127_11508172_0 protein flavinylation K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000001905 246.0
BYDH3_k127_11508172_1 - - - - 0.0000000000000000000000000000000001373 142.0
BYDH3_k127_11508172_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000009139 128.0
BYDH3_k127_11508172_3 ECF sigma factor K03088 - - 0.0000000000000000000000000002551 121.0
BYDH3_k127_11508172_4 integral membrane protein - - - 0.0000000000000000000003252 98.0
BYDH3_k127_11586229_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 569.0
BYDH3_k127_11586229_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 454.0
BYDH3_k127_11586229_2 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0000000000000000000000000000000000000000000000000000026 198.0
BYDH3_k127_11586229_3 LAGLIDADG-like domain - - - 0.00000000000000000005587 98.0
BYDH3_k127_11586229_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000002801 62.0
BYDH3_k127_11586229_5 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000001016 57.0
BYDH3_k127_11590081_0 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000003681 194.0
BYDH3_k127_11590081_1 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000001279 153.0
BYDH3_k127_11594243_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0001817,GO:0001819,GO:0001871,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009986,GO:0009987,GO:0016465,GO:0030246,GO:0030247,GO:0032677,GO:0032757,GO:0032879,GO:0032880,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044764,GO:0046812,GO:0048518,GO:0048522,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051082,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051704,GO:0061077,GO:0065007,GO:0070201,GO:0090087,GO:0098630,GO:0098743,GO:0101031,GO:1903530,GO:1903532,GO:1904951,GO:1990220,GO:2000482,GO:2000484,GO:2001065 - 0.0000000000000000000000000000000000000000000000000001491 189.0
BYDH3_k127_11594243_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000004762 87.0
BYDH3_k127_11594243_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000002051 57.0
BYDH3_k127_11594243_3 Preprotein translocase SecG subunit K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000001128 54.0
BYDH3_k127_11639166_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000009271 261.0
BYDH3_k127_11675381_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000003846 121.0
BYDH3_k127_11675381_1 FeS assembly protein SufB K09014 - - 0.0000000007522 71.0
BYDH3_k127_1174807_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 3.407e-225 741.0
BYDH3_k127_1174807_1 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000007162 105.0
BYDH3_k127_1174807_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00001286 55.0
BYDH3_k127_11749770_0 Lamin Tail Domain - - - 0.00000000000000000000000002906 122.0
BYDH3_k127_11749770_1 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00004198 55.0
BYDH3_k127_11833683_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 359.0
BYDH3_k127_11833683_1 GDSL-like Lipase/Acylhydrolase family K01073 - 3.1.2.20 0.00000001307 60.0
BYDH3_k127_11833683_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.00001778 53.0
BYDH3_k127_11869449_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000003126 196.0
BYDH3_k127_11869449_1 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101 3.1.1.29 0.000000000000000000000000000000001553 136.0
BYDH3_k127_11869449_2 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000001027 113.0
BYDH3_k127_11871784_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 312.0
BYDH3_k127_11871784_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000004248 259.0
BYDH3_k127_11920198_0 COG0058 Glucan phosphorylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 518.0
BYDH3_k127_11920198_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000001462 151.0
BYDH3_k127_11920198_2 COG0058 Glucan phosphorylase - - - 0.00000000000000000000000002303 109.0
BYDH3_k127_11985892_0 pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006962 417.0
BYDH3_k127_11985892_1 Nickel-dependent hydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004611 270.0
BYDH3_k127_11985892_2 TIGRFAM pyruvate ferredoxin flavodoxin oxidoreductase, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000005055 251.0
BYDH3_k127_11985892_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000004214 226.0
BYDH3_k127_11985892_4 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.0000000000000000009591 94.0
BYDH3_k127_11985892_5 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.00000000009358 66.0
BYDH3_k127_1201954_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009125,GO:0009129,GO:0009130,GO:0009131,GO:0009157,GO:0009159,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009178,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0032259,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042083,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046073,GO:0046078,GO:0046079,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 288.0
BYDH3_k127_1201954_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000004692 211.0
BYDH3_k127_1201954_10 Transcriptional regulator, TrmB - - - 0.0000000000003244 79.0
BYDH3_k127_1201954_11 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00001745 50.0
BYDH3_k127_1201954_12 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.0009869 44.0
BYDH3_k127_1201954_2 domain protein K02238 - - 0.0000000000000000000000000000000000000000000000000000827 198.0
BYDH3_k127_1201954_3 MafB19-like deaminase - - - 0.0000000000000000000000000000000000000000000000001272 188.0
BYDH3_k127_1201954_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000278 179.0
BYDH3_k127_1201954_5 deoxyribonucleotide catabolic process K01081 - 3.1.3.5 0.000000000000000000000000000000000000000000000002059 179.0
BYDH3_k127_1201954_6 PFAM peptidase M50 - - - 0.0000000000000000000000000000000000000002837 157.0
BYDH3_k127_1201954_7 Exonuclease - - - 0.000000000000000000000000000001531 128.0
BYDH3_k127_1201954_8 Cytidylyltransferase-like - - - 0.0000000000000000000000000008609 121.0
BYDH3_k127_1201954_9 HIT domain - - - 0.0000000000000000000001895 103.0
BYDH3_k127_12030482_0 Terminase-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001542 269.0
BYDH3_k127_12030482_1 COG2940 Proteins containing SET domain K07117 - - 0.0001261 49.0
BYDH3_k127_12135775_0 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000003678 213.0
BYDH3_k127_12135775_1 Type II secretion system (T2SS), protein F K02653 - - 0.000000000000000000000000000000000000000000368 169.0
BYDH3_k127_12145370_0 helicase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 342.0
BYDH3_k127_12254522_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00262 - 1.4.1.4 7.923e-197 622.0
BYDH3_k127_12254522_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000001177 193.0
BYDH3_k127_12254522_2 SET domain K07117 - - 0.0000000000000000000000000000000000002804 144.0
BYDH3_k127_12259461_0 exonuclease of the beta-lactamase fold involved in RNA K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 364.0
BYDH3_k127_12328725_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008734 531.0
BYDH3_k127_12328725_1 phenylalanyl-tRNA synthetase (beta subunit) K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.0000000000000000000000000003406 125.0
BYDH3_k127_12370722_0 FeS assembly ATPase SufC K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000001608 229.0
BYDH3_k127_12370722_1 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.0000000000000000000000000000000000000006566 157.0
BYDH3_k127_12370722_2 FeS assembly SUF system protein - - - 0.0000000000000000001185 93.0
BYDH3_k127_12370722_3 NifU-like N terminal domain K04488 - - 0.00000000000001833 75.0
BYDH3_k127_12406457_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000001829 187.0
BYDH3_k127_12406457_1 Radical SAM domain protein - - - 0.00000000000000000000000002033 124.0
BYDH3_k127_12406457_2 Protein of unknown function (DUF2892) - - - 0.00000000000000003474 83.0
BYDH3_k127_12703614_0 DHH family K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 345.0
BYDH3_k127_12703614_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000004763 234.0
BYDH3_k127_12703614_2 deoxyribonucleotide catabolic process K01081 - 3.1.3.5 0.000000000000000000000000000000000000000000000003031 176.0
BYDH3_k127_12703614_3 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000008935 154.0
BYDH3_k127_12703614_4 establishment of competence for transformation K02238 - - 0.000000000000000000000000000000000002526 156.0
BYDH3_k127_12703614_5 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.00000000000000000002361 95.0
BYDH3_k127_12703614_6 SNARE associated Golgi protein - - - 0.0000000006049 68.0
BYDH3_k127_12741175_0 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 522.0
BYDH3_k127_12741175_1 Starch synthase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 333.0
BYDH3_k127_12794238_0 PFAM ATP-binding region, ATPase domain protein - - - 0.000000000000000000000000000000000000002228 166.0
BYDH3_k127_12794238_1 PFAM UBA THIF-type NAD FAD binding protein - - - 0.0000000000000000000000000000009649 128.0
BYDH3_k127_12794238_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000418 53.0
BYDH3_k127_12880952_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 490.0
BYDH3_k127_12880952_1 Replicative DNA helicase K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 343.0
BYDH3_k127_12880952_2 RmuC family K09760 - - 0.00000000000000000000000000000000000149 152.0
BYDH3_k127_12880952_3 Participates in initiation and elongation during chromosome replication K02314 GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 0.000000000000000000000000000000114 127.0
BYDH3_k127_12880952_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000006426 126.0
BYDH3_k127_12880952_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000138 115.0
BYDH3_k127_12883050_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 340.0
BYDH3_k127_12883050_1 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005169 255.0
BYDH3_k127_12883050_10 Prolyl oligopeptidase - - - 0.0000006753 60.0
BYDH3_k127_12883050_2 lipoprotein transporter activity K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000149 254.0
BYDH3_k127_12883050_3 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.00000000000000000000000000000000006298 149.0
BYDH3_k127_12883050_4 Secretion protein K02005 - - 0.00000000000000000000000000000009719 141.0
BYDH3_k127_12883050_5 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000003131 112.0
BYDH3_k127_12883050_6 Belongs to the DsbB family K03611 - - 0.0000000000000000000004138 102.0
BYDH3_k127_12883050_7 Vitamin k epoxide reductase - - - 0.0000000000000000000008259 100.0
BYDH3_k127_12883050_8 Transcriptional regulator K07669 - - 0.000000000000000002013 90.0
BYDH3_k127_12883050_9 PFAM response regulator receiver - - - 0.000000000001048 76.0
BYDH3_k127_12960178_0 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 557.0
BYDH3_k127_12960178_1 methionine sulfoxide reductase K07305,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000007667 117.0
BYDH3_k127_13011968_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 492.0
BYDH3_k127_13011968_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000007482 111.0
BYDH3_k127_13011968_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925,K07102 - 2.7.1.221 0.00000000000000001239 88.0
BYDH3_k127_13029622_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 338.0
BYDH3_k127_13029622_1 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000001008 166.0
BYDH3_k127_13029622_2 - K01278,K03561,K12287 - 3.4.14.5 0.000000000000000000000000006624 126.0
BYDH3_k127_1306435_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 435.0
BYDH3_k127_1306435_1 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000003658 201.0
BYDH3_k127_137902_0 Beta propeller domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001085 275.0
BYDH3_k127_137902_1 COG0659 Sulfate permease and related transporters (MFS superfamily K03321 - - 0.0000000000000000000000000000000000000000000000000000000000003174 215.0
BYDH3_k127_137902_2 STAS domain K03321 - - 0.000000000000000000000000000000000000000000009145 173.0
BYDH3_k127_137902_3 STAS domain K03321 - - 0.0000000000000000000000000004629 117.0
BYDH3_k127_137902_4 metallopeptidase activity - - - 0.000000737 63.0
BYDH3_k127_1389351_0 PFAM glycosyl transferase, family 51 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008878 466.0
BYDH3_k127_1389351_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008034 302.0
BYDH3_k127_1389351_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.7.7.7 0.000000000000000000000000000000000000000000000002642 188.0
BYDH3_k127_1389351_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.000000000000000000000000000002321 125.0
BYDH3_k127_1389351_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000001389 121.0
BYDH3_k127_1389351_5 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000009299 84.0
BYDH3_k127_1389351_6 Transcriptional regulator - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - 0.0000000000008664 69.0
BYDH3_k127_1407646_0 Sigma-70, region 4 K03088 - - 0.0000000000000006814 85.0
BYDH3_k127_152445_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000002132 204.0
BYDH3_k127_152445_1 PFAM Glycosyl transferase, group 1 - - - 0.00000007628 59.0
BYDH3_k127_1529181_0 membrane - - - 0.00000003228 66.0
BYDH3_k127_1638097_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 1.094e-248 787.0
BYDH3_k127_1676322_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000001892 183.0
BYDH3_k127_1676322_1 Phosphoglycerate mutase family K02226,K22316 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006401,GO:0006725,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016891,GO:0016893,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0032296,GO:0033013,GO:0033014,GO:0034641,GO:0034655,GO:0042364,GO:0042578,GO:0043170,GO:0043755,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046700,GO:0051186,GO:0051188,GO:0071667,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 3.1.26.4,3.1.3.73 0.0000000000000001536 87.0
BYDH3_k127_1676322_2 histidine kinase HAMP region domain protein K03406 - - 0.0003436 51.0
BYDH3_k127_1687537_0 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000007343 194.0
BYDH3_k127_1687537_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000007884 157.0
BYDH3_k127_1687537_2 Restriction endonuclease K07448 - - 0.00000000000000000000005045 110.0
BYDH3_k127_1687537_3 Belongs to the peptidase S8 family K03561,K12287,K20276 - - 0.00000000000000004184 98.0
BYDH3_k127_1687537_4 PFAM Methyltransferase type 11 - - - 0.00000000000004882 80.0
BYDH3_k127_1687537_5 SMART Fibronectin type III domain protein - - - 0.00000000000241 79.0
BYDH3_k127_1909250_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009118 409.0
BYDH3_k127_1909250_1 NADPH-quinone reductase (modulator of drug activity B) K00355,K11748 - 1.6.5.2 0.000000000000000000000000000000004232 130.0
BYDH3_k127_1909250_2 Domain of unknown function (DUF1905) - - - 0.00000000000000000000001447 103.0
BYDH3_k127_1959121_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000567 542.0
BYDH3_k127_1959121_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000001593 160.0
BYDH3_k127_1959121_2 Carboxysome Shell Carbonic Anhydrase - - - 0.000000000000000000000000000000000000001615 151.0
BYDH3_k127_1959121_3 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000001746 64.0
BYDH3_k127_1959121_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000005297 53.0
BYDH3_k127_1959121_5 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00006285 51.0
BYDH3_k127_2006889_0 TspO/MBR family K05770 - - 0.0000000000000000000000000000000000000000000000001608 179.0
BYDH3_k127_2006889_1 Glycosyl transferase, family 2 K13693 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006011,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009225,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0034641,GO:0040007,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046983,GO:0055086,GO:0071704,GO:1901135,GO:1901360 2.4.1.266 0.00000000000000000000000000002241 129.0
BYDH3_k127_2006889_2 nUDIX hydrolase K08312 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019144,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872 - 0.0000000000000000000000000002644 121.0
BYDH3_k127_2006889_3 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000003619 95.0
BYDH3_k127_2006889_4 NUDIX domain - - - 0.000025 48.0
BYDH3_k127_2097674_0 Fibronectin type 3 domain K20276 - - 0.00004106 56.0
BYDH3_k127_2122294_0 Domain of unknown function (DUF4215) - - - 0.000001029 61.0
BYDH3_k127_2122294_1 Parallel beta-helix repeats - - - 0.000876 51.0
BYDH3_k127_2162878_0 Type IV secretory pathway, VirB4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 342.0
BYDH3_k127_2162878_1 COG COG3451 Type IV secretory pathway, VirB4 components - - - 0.00000001101 64.0
BYDH3_k127_2281381_0 SpoVR family - - - 3.448e-228 717.0
BYDH3_k127_2281381_1 Belongs to the UPF0229 family K09786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 433.0
BYDH3_k127_2281381_2 ATP cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000004002 123.0
BYDH3_k127_2281381_3 Serine Protein Kinase K07180 GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006995,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0042594,GO:0043170,GO:0043412,GO:0043562,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.00000000000000008779 79.0
BYDH3_k127_2281381_4 cation diffusion facilitator family transporter K16264 - - 0.000000000005204 77.0
BYDH3_k127_2443367_0 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009545 265.0
BYDH3_k127_2443367_1 membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000002495 105.0
BYDH3_k127_2489065_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000004167 227.0
BYDH3_k127_2489065_1 Penicillin-binding protein, transpeptidase domain protein K03587,K08384 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000001184 225.0
BYDH3_k127_2489065_2 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000003712 134.0
BYDH3_k127_2489065_3 PFAM aminotransferase, class I and II - - - 0.0000000000000000000000000113 111.0
BYDH3_k127_249028_0 2-Nitropropane dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001743 263.0
BYDH3_k127_2590483_0 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000007643 116.0
BYDH3_k127_2637722_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 315.0
BYDH3_k127_2650388_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000392 117.0
BYDH3_k127_2650388_1 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000009872 80.0
BYDH3_k127_2650388_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K13888 - - 0.0000001463 64.0
BYDH3_k127_2684898_0 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.0000000000000000000000000000000000000000001143 160.0
BYDH3_k127_2684898_1 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000005706 143.0
BYDH3_k127_2684898_2 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.00000000000000000000000000003695 119.0
BYDH3_k127_2684898_3 - - - - 0.0000000000000000006593 89.0
BYDH3_k127_274486_0 Catalyzes the formation of S-adenosylmethionine from methionine and ATP K00789 GO:0000096,GO:0000166,GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006556,GO:0006732,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009987,GO:0010494,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046500,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901576,GO:1901605,GO:1990904 2.5.1.6 0.0000000000000000000000000000000001176 139.0
BYDH3_k127_274486_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000222 133.0
BYDH3_k127_2857741_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.432e-248 792.0
BYDH3_k127_2857741_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 542.0
BYDH3_k127_2857741_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000008807 189.0
BYDH3_k127_2857741_3 Beta-lactamase superfamily domain - - - 0.000000000000000000000006655 110.0
BYDH3_k127_2857741_4 oligosaccharyl transferase activity - - - 0.0000000000000000000007008 109.0
BYDH3_k127_2857741_5 Ribosomal RNA adenine dimethylase - - - 0.00000000000000006845 88.0
BYDH3_k127_2857741_6 Bacterial extracellular solute-binding protein K02027 - - 0.00000008093 62.0
BYDH3_k127_2957376_0 RNA recognition motif - - - 0.000000000000000000000002184 107.0
BYDH3_k127_2957376_1 PFAM PKD domain containing protein - - - 0.0000000000005733 82.0
BYDH3_k127_2957376_2 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000004159 68.0
BYDH3_k127_2990121_0 Aminoacyl-tRNA editing domain - - - 0.0000000000000000000000000000000000002872 146.0
BYDH3_k127_2990121_1 Large extracellular alpha-helical protein K06894 - - 0.00007068 55.0
BYDH3_k127_2990121_2 Alpha-2-Macroglobulin K06894 - - 0.0008342 52.0
BYDH3_k127_2995832_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840 - 5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004361 363.0
BYDH3_k127_2995832_1 Type IV pilus assembly protein PilM; K02662 - - 0.00000000002271 76.0
BYDH3_k127_2995832_2 COG3103 SH3 domain protein K01448 GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 3.5.1.28 0.00000093 61.0
BYDH3_k127_2995832_3 general secretion pathway protein K02456 - - 0.0004302 48.0
BYDH3_k127_2995832_4 LVIVD repeat - - - 0.0006911 53.0
BYDH3_k127_3060797_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 510.0
BYDH3_k127_3060797_1 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 451.0
BYDH3_k127_3060797_2 Flavoprotein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001021 285.0
BYDH3_k127_3060797_3 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K01834 - 5.4.2.11 0.0000000000000000000000000000000000000000000001047 176.0
BYDH3_k127_3060797_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000009163 161.0
BYDH3_k127_3070402_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000003241 231.0
BYDH3_k127_3070402_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000007443 57.0
BYDH3_k127_3194079_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000468 288.0
BYDH3_k127_3194079_1 phenylalanyl-tRNA synthetase beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000018 248.0
BYDH3_k127_3194079_2 pathogenesis K15125 - - 0.0001455 52.0
BYDH3_k127_3204366_0 phosphotransferase activity, for other substituted phosphate groups - - - 0.0000000000000000000000000000000000000000000000001419 183.0
BYDH3_k127_3204366_1 deoxyribonucleotide catabolic process K01081 - 3.1.3.5 0.000000000000000000000000000000000000000000005516 171.0
BYDH3_k127_3204366_2 LmbE homologs - - - 0.00000000000000000000000000000000000005564 149.0
BYDH3_k127_3204366_3 ATP-grasp domain K01955 - 6.3.5.5 0.0000000000000000113 90.0
BYDH3_k127_3323218_0 PFAM glycosyl transferase family 35 K00688 - 2.4.1.1 0.000000000000000000000000000000000000000000000000000003491 207.0
BYDH3_k127_3323218_1 Bacterial transferase hexapeptide repeat K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000004644 114.0
BYDH3_k127_3433735_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K00773,K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0050896,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29,2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000001734 249.0
BYDH3_k127_3433735_1 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000001126 109.0
BYDH3_k127_3433735_2 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000001261 102.0
BYDH3_k127_3433735_3 PFAM BNR Asp-box repeat - - - 0.000000000000000004448 97.0
BYDH3_k127_3433735_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000002901 68.0
BYDH3_k127_3482259_0 Glycosyltransferase Family 4 K19424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003527 274.0
BYDH3_k127_3482259_1 Glycosyl transferases group 1 K13668 GO:0000009,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0033164,GO:0040007,GO:0043750,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.4.1.346 0.00000000000000000000000000000000000000000000003944 192.0
BYDH3_k127_3482259_2 COG0463 Glycosyltransferases involved in cell wall biogenesis K00721 - 2.4.1.83 0.000000000000000000000000000000000000000009526 164.0
BYDH3_k127_3482259_3 Serine-type D-Ala-D-Ala carboxypeptidase - - - 0.0000000000000000000000001306 118.0
BYDH3_k127_3482259_4 PFAM band 7 protein - - - 0.000009469 56.0
BYDH3_k127_349014_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000001416 165.0
BYDH3_k127_349014_1 TPR Domain containing protein K12600 - - 0.0000000002282 74.0
BYDH3_k127_3512641_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 365.0
BYDH3_k127_3512641_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000017 281.0
BYDH3_k127_3512641_2 Psort location Cytoplasmic, score 8.87 - - - 0.000000000000002926 81.0
BYDH3_k127_3512641_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0002938 48.0
BYDH3_k127_3518867_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000002469 186.0
BYDH3_k127_3518867_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000002246 181.0
BYDH3_k127_3518867_2 chemotaxis protein K03406 - - 0.000000000000000000000000000000000003706 151.0
BYDH3_k127_3518867_3 PspC domain - - - 0.000002684 51.0
BYDH3_k127_3661512_0 Ferric reductase like transmembrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001311 279.0
BYDH3_k127_3661512_1 - - - - 0.000000000000000002117 92.0
BYDH3_k127_3661512_2 Ceramide hydroxylase involved in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids. Hydroxylates the very long chain fatty acid of ceramides at C2 and C3 K19703 GO:0000170,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016491,GO:0019637,GO:0019752,GO:0030148,GO:0031224,GO:0031984,GO:0032787,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0055114,GO:0071704,GO:0080132,GO:0098827,GO:1901135,GO:1901564,GO:1901566,GO:1901576,GO:1903509 1.14.18.6 0.0000000003586 66.0
BYDH3_k127_3661512_3 Domain of unknown function (DUF4352) - - - 0.0000003688 59.0
BYDH3_k127_3724947_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000001574 231.0
BYDH3_k127_3724947_1 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.000000000000000000000000000000000000006048 154.0
BYDH3_k127_3724947_2 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.00000000000000003541 84.0
BYDH3_k127_3783695_0 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000001047 246.0
BYDH3_k127_3783695_1 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000004912 77.0
BYDH3_k127_3802610_0 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000001324 241.0
BYDH3_k127_3802610_1 -O-antigen - - - 0.00000000000000000000000000000000000000008386 173.0
BYDH3_k127_3802610_2 N-acetyltransferase - - - 0.000000000167 64.0
BYDH3_k127_3803774_0 Inner membrane protein CreD K06143 - - 0.000000000000000000000000000000000000000000000000000000000406 211.0
BYDH3_k127_3803774_1 - - - - 0.000000000000000000000000000000000000000000009796 174.0
BYDH3_k127_3803774_2 - - - - 0.00000001096 61.0
BYDH3_k127_3803774_3 Permease - - - 0.0001614 44.0
BYDH3_k127_3841621_0 PrkA family serine protein kinase K07180 - - 0.0 1034.0
BYDH3_k127_3841621_1 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000002057 140.0
BYDH3_k127_3841621_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000001787 102.0
BYDH3_k127_3841621_3 Transcriptional regulator, TrmB - - - 0.000000000000000000009362 101.0
BYDH3_k127_3841621_4 Host-nuclease inhibitor protein Gam - - - 0.000000001229 67.0
BYDH3_k127_3917095_0 PFAM CagE, TrbE, VirB component of type IV transporter system K03199,K12063,K12080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 531.0
BYDH3_k127_3917095_1 PFAM response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000795 240.0
BYDH3_k127_3917095_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000001048 158.0
BYDH3_k127_3917095_3 Transglycosylase SLT domain K03194 - - 0.0000000000000000000000000004797 122.0
BYDH3_k127_3917095_4 Belongs to the sigma-70 factor family K03088 - - 0.000000000000006734 82.0
BYDH3_k127_3917095_5 Type IV secretion system proteins K03200 - - 0.0000000000005395 79.0
BYDH3_k127_3917095_6 Type IV secretory pathway, VirB3-like protein K03198 - - 0.0000002782 59.0
BYDH3_k127_3963606_0 Psort location Cytoplasmic, score 8.96 K01784,K02473 - 5.1.3.2,5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000001297 239.0
BYDH3_k127_3963606_1 Psort location Cytoplasmic, score 8.96 K01784,K02473 - 5.1.3.2,5.1.3.7 0.00000000000000000000002622 102.0
BYDH3_k127_3963606_2 PFAM glycosyl transferase group 1 - - - 0.000000000000000000001537 108.0
BYDH3_k127_4055834_0 Bacitracin resistance protein BacA K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 313.0
BYDH3_k127_4055834_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000006176 188.0
BYDH3_k127_4055834_2 secondary active sulfate transmembrane transporter activity K03321 - - 0.00000000000000000000000000000000000000000000009443 179.0
BYDH3_k127_4147711_0 COGs COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 317.0
BYDH3_k127_4147711_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00271 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.4.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000001006 258.0
BYDH3_k127_4147711_2 Nitroreductase - - - 0.0000000000000000000000000000000000000002199 162.0
BYDH3_k127_4147711_3 ThiF family - - - 0.00000000000001351 79.0
BYDH3_k127_4184464_0 DNA polymerase K02337 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 2.7.7.7 1.192e-285 912.0
BYDH3_k127_4195981_0 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.000000000000000000000000000000000000000008712 162.0
BYDH3_k127_4195981_1 Serine aminopeptidase, S33 K06889 - - 0.0000000000004073 79.0
BYDH3_k127_4268814_0 Ribosomal RNA adenine dimethylases K02528 - 2.1.1.182 0.000000000000000008542 92.0
BYDH3_k127_4268814_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000001112 78.0
BYDH3_k127_4268814_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000007805 76.0
BYDH3_k127_4268814_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000001776 68.0
BYDH3_k127_4268814_4 Trehalose utilisation - - - 0.0000001618 64.0
BYDH3_k127_4268814_5 Bacterial protein of unknown function (DUF916) K00226 - 1.3.98.1 0.000001881 60.0
BYDH3_k127_4268814_6 Papain family cysteine protease - - - 0.0001008 54.0
BYDH3_k127_429095_0 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 381.0
BYDH3_k127_429095_1 Anticodon binding domain K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000868 360.0
BYDH3_k127_429095_2 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 0.00000000000000000000000000000000000000008022 165.0
BYDH3_k127_429095_3 Domain present in PSD-95, Dlg, and ZO-1/2. K11749 - - 0.00000000000000000000000003252 113.0
BYDH3_k127_429095_4 Involved in formation and maintenance of cell shape K03570 - - 0.0000000284 64.0
BYDH3_k127_430086_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000002743 174.0
BYDH3_k127_430086_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000002813 112.0
BYDH3_k127_430086_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000008259 104.0
BYDH3_k127_430086_3 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.0000000000000000003381 99.0
BYDH3_k127_4311665_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K03778,K18347 - 1.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 304.0
BYDH3_k127_4311665_1 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000001445 167.0
BYDH3_k127_4311665_2 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000001968 129.0
BYDH3_k127_4311665_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000001864 125.0
BYDH3_k127_4435326_0 5'-nucleotidase activity K01081 GO:0000215,GO:0000287,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006152,GO:0006213,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009123,GO:0009125,GO:0009158,GO:0009161,GO:0009164,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0012505,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042454,GO:0042578,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046128,GO:0046130,GO:0046135,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:0098542,GO:0140098,GO:0140101,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.1.3.5 0.00000000000000000000000000000000000003215 150.0
BYDH3_k127_4435326_1 PFAM ABC transporter related K06158 - - 0.000000000000000000000000000000004186 141.0
BYDH3_k127_4478459_0 diguanylate cyclase - - - 0.000000000000000000006076 98.0
BYDH3_k127_4478459_1 NlpC/P60 family - - - 0.00001496 56.0
BYDH3_k127_4478459_2 EXOIII - - - 0.0002561 51.0
BYDH3_k127_4494166_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005099 477.0
BYDH3_k127_4494166_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000006973 59.0
BYDH3_k127_4534239_1 tail collar domain protein - - - 0.000000003764 70.0
BYDH3_k127_4537236_0 Belongs to the class-II aminoacyl-tRNA synthetase family K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 445.0
BYDH3_k127_4537236_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003143 373.0
BYDH3_k127_4537236_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000001061 58.0
BYDH3_k127_4537236_11 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0005096 49.0
BYDH3_k127_4537236_2 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001944 278.0
BYDH3_k127_4537236_3 Polysaccharide biosynthesis protein K01784,K02473,K03274 - 5.1.3.2,5.1.3.20,5.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000001142 250.0
BYDH3_k127_4537236_4 Hydrolase, tatd K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.0000000000000000000000000000000000000000000000001424 186.0
BYDH3_k127_4537236_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000003095 141.0
BYDH3_k127_4537236_6 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000001553 136.0
BYDH3_k127_4537236_7 AI-2E family transporter K03548 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000001371 134.0
BYDH3_k127_4537236_8 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000004003 79.0
BYDH3_k127_4537236_9 - - - - 0.0000000000000004151 85.0
BYDH3_k127_457412_0 von Willebrand factor (vWF) type A domain - - - 0.0000000001673 72.0
BYDH3_k127_457412_1 peptidyl-prolyl isomerase K07533 - 5.2.1.8 0.000000288 61.0
BYDH3_k127_4621082_0 Bacterial protein of unknown function (DUF916) - - - 0.0002351 53.0
BYDH3_k127_4635228_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 431.0
BYDH3_k127_4635228_1 DNA segregation ATPase FtsK SpoIIIE K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 439.0
BYDH3_k127_4635228_2 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00226,K00254,K02823,K17828 - 1.3.1.14,1.3.5.2,1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006732 402.0
BYDH3_k127_4635228_3 transferase activity - GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000008244 69.0
BYDH3_k127_4635228_4 COG0501 Zn-dependent protease with chaperone function - - - 0.000002243 59.0
BYDH3_k127_4635228_5 spore germination K08978 - - 0.00001046 53.0
BYDH3_k127_4635228_6 COG1404 Subtilisin-like serine proteases K13276 GO:0005575,GO:0005576 - 0.00001386 53.0
BYDH3_k127_4635228_7 - - - - 0.0009967 46.0
BYDH3_k127_4658139_0 PFAM Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009261 285.0
BYDH3_k127_4658139_1 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003283 266.0
BYDH3_k127_4658139_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000002753 105.0
BYDH3_k127_4666038_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008934 552.0
BYDH3_k127_4666246_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006449 405.0
BYDH3_k127_4666246_1 Peptidase S24-like K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000005656 173.0
BYDH3_k127_4674798_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03696 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 342.0
BYDH3_k127_4674798_1 Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 310.0
BYDH3_k127_4674798_2 DNA polymerase III subunits gamma and tau domain III K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000217 246.0
BYDH3_k127_4674798_3 protein secretion by the type IV secretion system K00564,K02026,K10716,K11070,K13924,K14393 - 2.1.1.172,2.1.1.80,3.1.1.61 0.0000000000002412 77.0
BYDH3_k127_473477_0 PFAM Bacterial type II secretion system protein F domain K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000006139 249.0
BYDH3_k127_473477_1 Prokaryotic N-terminal methylation motif - - - 0.00001111 56.0
BYDH3_k127_4847471_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006568 347.0
BYDH3_k127_4847471_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000004492 183.0
BYDH3_k127_4847471_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 0.0000000000000000000009324 97.0
BYDH3_k127_4847471_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000001519 77.0
BYDH3_k127_4847471_4 Belongs to the UPF0109 family K06960 - - 0.000000000000003859 79.0
BYDH3_k127_4847471_5 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000433 75.0
BYDH3_k127_4847471_6 - - - - 0.00000272 54.0
BYDH3_k127_4913578_0 cellulase activity - - - 0.0000000000000000000000000000000000000008275 169.0
BYDH3_k127_4938653_0 Region found in RelA / SpoT proteins K00951 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 435.0
BYDH3_k127_4938653_1 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000001496 256.0
BYDH3_k127_4938653_2 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000003663 205.0
BYDH3_k127_4938653_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000002158 135.0
BYDH3_k127_4938739_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088 542.0
BYDH3_k127_499611_0 Heat shock 70 kDa protein K04043 - - 5.086e-237 749.0
BYDH3_k127_499611_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 299.0
BYDH3_k127_499611_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000699 238.0
BYDH3_k127_499611_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000004732 121.0
BYDH3_k127_499611_4 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000002692 111.0
BYDH3_k127_499611_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000001593 106.0
BYDH3_k127_499611_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000001974 86.0
BYDH3_k127_5124694_0 pilus organization K12132 - 2.7.11.1 0.0001404 53.0
BYDH3_k127_514686_0 Elongation factor G C-terminus K06207 GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 367.0
BYDH3_k127_514686_1 GB M14777, GB S76221, GB S76223, GB S76225, GB S76228, GB S76232, GB S76235, GB S49975, GB M21866, GB M21758, GB M15872, GB M25627, GB S76219, SP P08263, SP P09210, PID 187132, PID 306809, PID 306810, PID 306815, PID 825605, and PID 951352 - - - 0.0000000000000000000000000000000000000000000000000002503 197.0
BYDH3_k127_5150156_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 463.0
BYDH3_k127_5150156_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 325.0
BYDH3_k127_5150156_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 316.0
BYDH3_k127_520497_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00362 - 1.7.1.15 0.00000000000000000000000000000000000000000000000000000000004924 220.0
BYDH3_k127_520497_1 Protein of unknown function (DUF1003) - - - 0.000000000000000000000000000007421 126.0
BYDH3_k127_520497_2 Psort location Cytoplasmic, score - - - 0.0000000000144 67.0
BYDH3_k127_520497_3 Ferredoxin K05337 - - 0.00003488 50.0
BYDH3_k127_5232216_0 K -dependent Na Ca exchanger K07301 - - 0.0000000000000000000000000000000000000000000002039 179.0
BYDH3_k127_5232216_1 Sodium proton antiporter, NhaD family - - - 0.00000000000000000000000000000000000003331 154.0
BYDH3_k127_5323148_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000004122 243.0
BYDH3_k127_5323148_1 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000000000000000000009675 106.0
BYDH3_k127_5323148_2 17 kDa outer membrane surface antigen - - - 0.0000000002982 69.0
BYDH3_k127_5323148_3 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000005895 55.0
BYDH3_k127_5323148_4 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.00002025 51.0
BYDH3_k127_5399581_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.0000000000000000000000000000000000000000000000001899 188.0
BYDH3_k127_5399581_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.0000000000000000000000000000000000000000000003593 187.0
BYDH3_k127_5399581_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000002164 115.0
BYDH3_k127_5417395_0 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 444.0
BYDH3_k127_5417395_1 PFAM glycosyl transferase, family 51 - - - 0.000000000000000000000000000000000000000000000000009311 198.0
BYDH3_k127_5421896_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000005645 174.0
BYDH3_k127_5421896_1 sugar transferase K03606 - - 0.0000000000000003668 90.0
BYDH3_k127_5421896_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000001718 77.0
BYDH3_k127_545452_0 response regulator receiver - - - 0.000000001134 69.0
BYDH3_k127_545452_1 Parallel beta-helix repeats - - - 0.0002863 53.0
BYDH3_k127_5617836_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001031 271.0
BYDH3_k127_5617836_1 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000272 251.0
BYDH3_k127_5617836_2 PFAM ABC-3 protein K09816 - - 0.00000000000000000000000000000000000000000000000000000000000000821 227.0
BYDH3_k127_5617836_3 Abc transporter K09817 - - 0.0000000000000000000000000000000000000000000000000000000000001857 220.0
BYDH3_k127_5617836_4 Psort location Cytoplasmic, score 8.87 K07043 - - 0.00000000000000000000000000375 117.0
BYDH3_k127_5617836_5 Belongs to the Fur family K03711 - - 0.000000000000002215 82.0
BYDH3_k127_5663496_0 ribonucleoside-diphosphate reductase activity K00525,K21636 - 1.1.98.6,1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007087 582.0
BYDH3_k127_5663496_1 TraX protein - - - 0.0000000000000000000000000000000007039 140.0
BYDH3_k127_5680942_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001694 263.0
BYDH3_k127_5680942_1 Ferrous iron transport protein B K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000001629 141.0
BYDH3_k127_5680942_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000004407 113.0
BYDH3_k127_5680942_3 Binds the 23S rRNA K02909 - - 0.0000000000000000002062 89.0
BYDH3_k127_5680942_4 Lytic murein transglycosylase K08305 - - 0.0003192 53.0
BYDH3_k127_5680942_5 COG2206 HD-GYP domain - - - 0.0005173 52.0
BYDH3_k127_5731735_0 COG0643 Chemotaxis protein histidine kinase and related kinases K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001702 269.0
BYDH3_k127_5731735_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000002976 220.0
BYDH3_k127_5731735_2 PFAM response regulator receiver K03413 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000002696 120.0
BYDH3_k127_5731735_3 Two component signalling adaptor domain K03408 - - 0.00000002909 63.0
BYDH3_k127_5731735_4 CheC-like family K03410 - - 0.00001225 51.0
BYDH3_k127_5890918_0 P-type DNA transfer ATPase VirB11 K03196 - - 0.000000000000000000000000000000000000000000000000000000000000000001422 240.0
BYDH3_k127_5890918_1 Bacterial conjugation TrbI-like protein K03195 - - 0.000000000000000000000000000000000000000000000013 186.0
BYDH3_k127_5890918_2 type IV secretion K03204,K12085 - - 0.00000000121 64.0
BYDH3_k127_5898636_0 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004753 533.0
BYDH3_k127_5898636_1 Exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000002606 257.0
BYDH3_k127_5898636_2 Pkd domain containing protein - - - 0.00007976 50.0
BYDH3_k127_5912133_0 Probable RNA and SrmB- binding site of polymerase A K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009183 295.0
BYDH3_k127_5921237_0 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000000000000000000000000000000000000000000000000001168 200.0
BYDH3_k127_5921237_1 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000001015 102.0
BYDH3_k127_5977062_0 Transport of potassium into the cell K03549 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007073 362.0
BYDH3_k127_5977062_1 TipAS antibiotic-recognition domain K21744 - - 0.000000000000000001979 91.0
BYDH3_k127_6258571_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000662 609.0
BYDH3_k127_6258571_1 Magnesium chelatase, subunit ChlI K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 463.0
BYDH3_k127_6258571_2 - - - - 0.000000000000000000000000000000000000000000000000000000357 199.0
BYDH3_k127_6258571_3 NYN domain - - - 0.0000000000000000000000000000000000000000000000000002984 191.0
BYDH3_k127_6258571_4 Belongs to the 'phage' integrase family K04763 - - 0.00000000000000000000000000000000000000000000000001433 190.0
BYDH3_k127_6258571_5 Peptidoglycan-binding LysM - - - 0.0000000000000000000000000000000000000000000664 173.0
BYDH3_k127_6258571_6 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000004493 104.0
BYDH3_k127_6258571_7 Permeases of the major facilitator superfamily K08153 - - 0.000000002753 65.0
BYDH3_k127_6258571_8 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000008049 58.0
BYDH3_k127_6283763_0 Domain of unknown function (DUF4347) - - - 0.000000000000000000007453 111.0
BYDH3_k127_6283763_1 LamG domain protein jellyroll fold domain protein K03418,K07151 - 2.4.99.18,3.5.1.56 0.000000004623 72.0
BYDH3_k127_6336625_0 PFAM type II secretion system protein E K02454,K02652 - - 0.00000000000000000000000000002017 129.0
BYDH3_k127_6453293_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 0.000000000000000000000000000000000000000000000000000000000000001682 223.0
BYDH3_k127_6488833_0 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000003627 240.0
BYDH3_k127_6488833_1 PFAM nuclease (SNase domain protein) K01174 - 3.1.31.1 0.000000000000000000000000000000000001187 145.0
BYDH3_k127_6488833_2 SMART Fibronectin type III domain protein - - - 0.00000000005321 74.0
BYDH3_k127_6488833_3 HI0933-like protein K07007 - - 0.00000000009769 66.0
BYDH3_k127_6488833_4 HI0933 family K07007 - - 0.0000000002854 70.0
BYDH3_k127_6537153_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate K03701 - - 5.551e-290 915.0
BYDH3_k127_6537153_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000004884 200.0
BYDH3_k127_6579727_0 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000003834 206.0
BYDH3_k127_6579727_1 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000002167 188.0
BYDH3_k127_6579727_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 0.000000000000001854 84.0
BYDH3_k127_675258_0 Efflux ABC transporter permease protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 354.0
BYDH3_k127_675258_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000003843 221.0
BYDH3_k127_675258_2 Cytochrome b5-like Heme/Steroid binding domain K00287 - 1.5.1.3 0.00000000000008792 76.0
BYDH3_k127_675258_3 Aamy_C - - - 0.00000005602 57.0
BYDH3_k127_675258_4 - - - - 0.0002588 50.0
BYDH3_k127_6753150_0 UDP-glucose 4-epimerase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 405.0
BYDH3_k127_6753150_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000005719 241.0
BYDH3_k127_6753150_2 Belongs to the mannose-6-phosphate isomerase type 2 family K00971 - 2.7.7.13 0.00000000000000000000000000000001767 138.0
BYDH3_k127_6753150_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.000000000000000000000002285 108.0
BYDH3_k127_6903015_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000007884 102.0
BYDH3_k127_6903015_1 pilus assembly protein PilM K02662 - - 0.0000000000000000000003401 109.0
BYDH3_k127_6903015_2 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000008642 88.0
BYDH3_k127_6913647_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005541 329.0
BYDH3_k127_6913647_1 ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000004783 224.0
BYDH3_k127_6913647_2 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000234 202.0
BYDH3_k127_6913647_3 Transketolase K00615 - 2.2.1.1 0.00000000000000000000000000006991 119.0
BYDH3_k127_6913647_4 PFAM Cysteine-rich secretory protein family - - - 0.0000000000000000000000009378 116.0
BYDH3_k127_6913647_5 6-phosphogluconolactonase K01057 - 3.1.1.31 0.0000001213 62.0
BYDH3_k127_6913647_6 domain, Protein - - - 0.000004348 60.0
BYDH3_k127_6913647_7 amino acid peptide transporter K03305 - - 0.000718 48.0
BYDH3_k127_6931199_0 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000000000000000000000000000000000000000009484 248.0
BYDH3_k127_6931199_1 COG0607 Rhodanese-related sulfurtransferase - - - 0.0000000000000007543 83.0
BYDH3_k127_6931199_2 heme binding K21472 - - 0.0000000000004334 80.0
BYDH3_k127_6931199_3 NlpC/P60 family - - - 0.0000000002661 71.0
BYDH3_k127_6940419_0 PFAM Type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 397.0
BYDH3_k127_6940419_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000004113 219.0
BYDH3_k127_6940419_2 PFAM Bacterial type II secretion system protein F domain K02653 - - 0.0000000000000000000000000000000000000000000005343 178.0
BYDH3_k127_6940419_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000001198 100.0
BYDH3_k127_6940419_4 PFAM CheC domain protein K03410 - - 0.0000000000000001633 87.0
BYDH3_k127_6940419_5 protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.000000000000002899 82.0
BYDH3_k127_699266_0 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008688 517.0
BYDH3_k127_699266_1 membrane - - - 0.0000000000002594 76.0
BYDH3_k127_6999297_0 TrbL/VirB6 plasmid conjugal transfer protein K03201 - - 0.0000000000003178 79.0
BYDH3_k127_6999297_1 VirB8 protein K03203 - - 0.000000002436 67.0
BYDH3_k127_6999297_2 Conjugal transfer protein - - - 0.000000008375 62.0
BYDH3_k127_7017082_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000004192 127.0
BYDH3_k127_7017082_1 PFAM response regulator receiver K07657 - - 0.00000000000000006487 91.0
BYDH3_k127_7037271_0 COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats - - - 0.000000000000000000000000002681 126.0
BYDH3_k127_7060696_0 Male sterility protein K17716 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 375.0
BYDH3_k127_7060696_1 Beta-eliminating lyase K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000584 359.0
BYDH3_k127_7060696_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000007922 158.0
BYDH3_k127_7060696_3 methyltransferase - - - 0.000000000002365 68.0
BYDH3_k127_7060696_4 PFAM glycosyl transferase family 9 - - - 0.0000000001828 69.0
BYDH3_k127_7239172_0 Conserved TM helix - - - 0.00000000000000000000004759 107.0
BYDH3_k127_7239172_1 peptide catabolic process - - - 0.000000000000000000001163 104.0
BYDH3_k127_7239172_2 transcriptional - - - 0.000005398 56.0
BYDH3_k127_7249785_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 372.0
BYDH3_k127_7249785_1 SOS response K07741,K14623 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003627 346.0
BYDH3_k127_7249785_2 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.00000000000000000000001197 113.0
BYDH3_k127_7249785_3 Chaperone - - - 0.00000009255 63.0
BYDH3_k127_7249785_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000002702 50.0
BYDH3_k127_7303160_0 RHS Repeat - - - 0.00003361 54.0
BYDH3_k127_7381413_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000001476 213.0
BYDH3_k127_7381413_1 - - - - 0.0000000000002092 72.0
BYDH3_k127_7381413_2 - - - - 0.0000000000009377 68.0
BYDH3_k127_7381413_3 - - - - 0.00000001249 57.0
BYDH3_k127_7381413_4 - - - - 0.0000001354 54.0
BYDH3_k127_73994_0 coenzyme F390 K01912 - 6.2.1.30 7.562e-202 653.0
BYDH3_k127_73994_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000001344 227.0
BYDH3_k127_73994_2 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K18827 - 2.1.1.222,2.1.1.294,2.1.1.64,2.7.1.181 0.0000000000000000001161 100.0
BYDH3_k127_73994_3 Hypothetical methyltransferase - - - 0.00000000007034 70.0
BYDH3_k127_742061_0 Radical_SAM C-terminal domain K07739 - 2.3.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000007374 251.0
BYDH3_k127_742061_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000445 229.0
BYDH3_k127_742061_2 Radical_SAM C-terminal domain K07739 - 2.3.1.48 0.0000000000000000000000000000000000244 141.0
BYDH3_k127_742061_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000001205 132.0
BYDH3_k127_742061_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000002571 117.0
BYDH3_k127_742061_5 COG0500 SAM-dependent methyltransferases - - - 0.000000000000000000000005916 110.0
BYDH3_k127_742061_6 Methyltransferase domain - - - 0.00000000001257 74.0
BYDH3_k127_7443200_0 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000249 213.0
BYDH3_k127_7443200_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000002405 146.0
BYDH3_k127_7443200_2 Domain of unknown function (DUF4349) - - - 0.00000000007993 73.0
BYDH3_k127_7443200_3 membrane protein (DUF2207) - - - 0.0004854 50.0
BYDH3_k127_7455728_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000007778 111.0
BYDH3_k127_7455728_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.00000000000006988 75.0
BYDH3_k127_7455728_2 phosphoglycerate mutase K22305 - 3.1.3.3 0.00000000001643 72.0
BYDH3_k127_7576872_0 ATP-dependent DNA helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 467.0
BYDH3_k127_7576872_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000005253 186.0
BYDH3_k127_7576872_2 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000001176 79.0
BYDH3_k127_7576872_3 PaaX-like protein K02616 - - 0.000000004132 66.0
BYDH3_k127_7576872_4 PhoD-like phosphatase K14274,K14645,K20276 - - 0.000009837 56.0
BYDH3_k127_7576872_5 - - - - 0.0009063 51.0
BYDH3_k127_7638856_0 Belongs to the peptidase S8 family K14645 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 344.0
BYDH3_k127_7638856_1 Rhodanese Homology Domain - - - 0.00000000000000001191 89.0
BYDH3_k127_7638856_2 Cytochrome C biogenesis protein - - - 0.00000000003757 67.0
BYDH3_k127_7713767_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000001477 188.0
BYDH3_k127_7713767_1 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520,K13038 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23,4.1.1.36,6.3.2.5 0.00000000000000000000000000000000008948 137.0
BYDH3_k127_7713767_2 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000005667 131.0
BYDH3_k127_7719120_0 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 325.0
BYDH3_k127_7719120_1 C-terminal of Glycosyl hydrolases family 43 K06113 - 3.2.1.99 0.00000000004224 75.0
BYDH3_k127_7719120_2 PFAM Transposase IS200 like K07491 - - 0.000000000811 65.0
BYDH3_k127_7725420_0 Predicted membrane protein (DUF2206) - - - 0.00000000000000000000000000000000000000000000000000000002441 215.0
BYDH3_k127_7725420_1 Glycosyl transferase 4-like domain - - - 0.000000000000000000006437 97.0
BYDH3_k127_7776896_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 581.0
BYDH3_k127_7776896_1 Cytidylyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009476 250.0
BYDH3_k127_7776896_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000001351 157.0
BYDH3_k127_7787122_0 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004246 384.0
BYDH3_k127_7787122_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003113 358.0
BYDH3_k127_7787122_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K01802,K03772,K21028 - 2.8.1.11,5.2.1.8 0.000000000000000000000000000000012 130.0
BYDH3_k127_7787122_11 Mg2 transporter-C family protein K07507 - - 0.000000000000000000000000000004345 126.0
BYDH3_k127_7787122_13 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease - - - 0.00000000003137 71.0
BYDH3_k127_7787122_14 helicase activity K06915,K19172 - - 0.0007651 51.0
BYDH3_k127_7787122_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 GO:0002097,GO:0002098,GO:0002143,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 302.0
BYDH3_k127_7787122_3 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000001063 267.0
BYDH3_k127_7787122_4 Mur ligase family, catalytic domain K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000001005 265.0
BYDH3_k127_7787122_5 PFAM ATP cone domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001997 260.0
BYDH3_k127_7787122_6 Amino acid kinase family K09903 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006225,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009163,GO:0009165,GO:0009185,GO:0009188,GO:0009193,GO:0009194,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046048,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000864 214.0
BYDH3_k127_7787122_7 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000001013 187.0
BYDH3_k127_7787122_8 Belongs to the SUA5 family K07566 - 2.7.7.87 0.0000000000000000000000000000000002593 143.0
BYDH3_k127_7787122_9 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000005866 129.0
BYDH3_k127_7806690_0 Histidine kinase - - - 0.0000000000000000000000000000000000000001193 159.0
BYDH3_k127_7806690_1 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000001596 119.0
BYDH3_k127_7930515_0 Cytochrome C biogenesis protein K06196 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000001163 164.0
BYDH3_k127_7930515_1 Yqey-like protein K09117 - - 0.0000000000000000000000003887 110.0
BYDH3_k127_7930515_2 protein with SCP PR1 domains - - - 0.00000000000000000000683 104.0
BYDH3_k127_7930515_3 TIGRFAM Diguanylate cyclase - - - 0.00000000000000003465 89.0
BYDH3_k127_7930515_4 - - - - 0.0000000004439 66.0
BYDH3_k127_796179_0 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 417.0
BYDH3_k127_796179_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K13317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008125 386.0
BYDH3_k127_796179_2 Male sterility protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 312.0
BYDH3_k127_796179_3 Polysaccharide biosynthesis protein K03328 - - 0.00000000000000000000000000000000000000000005819 179.0
BYDH3_k127_796179_4 Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides K01784,K10011 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006040,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016741,GO:0016742,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0022607,GO:0033319,GO:0033320,GO:0034214,GO:0034641,GO:0034654,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046349,GO:0046483,GO:0046677,GO:0048037,GO:0048040,GO:0050662,GO:0050896,GO:0051259,GO:0051287,GO:0055086,GO:0055114,GO:0065003,GO:0070403,GO:0071704,GO:0071840,GO:0097159,GO:0099618,GO:0099619,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:2001313,GO:2001315 1.1.1.305,2.1.2.13,5.1.3.2 0.000000000000000000000000000000000000000171 160.0
BYDH3_k127_796179_5 capsule polysaccharide - - - 0.0000000000000000000000000000001586 130.0
BYDH3_k127_796179_6 PFAM Glycosyl transferases group 1 - - - 0.00000000003239 74.0
BYDH3_k127_796179_7 DREV methyltransferase - - - 0.000008518 51.0
BYDH3_k127_8002052_0 histidyl-tRNA aminoacylation K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004359 305.0
BYDH3_k127_8002052_1 Methyltransferase domain - - - 0.000000000000000000000000000000000291 141.0
BYDH3_k127_8002052_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000001333 142.0
BYDH3_k127_8002052_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000001325 127.0
BYDH3_k127_8002052_4 Glycosyl transferase family 2 - - - 0.000000000000000000004146 102.0
BYDH3_k127_8002052_5 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000009273 92.0
BYDH3_k127_8002052_6 Dolichyl-phosphate-mannose--protein O-mannosyl transferase K00728 - 2.4.1.109 0.00000000000000005021 94.0
BYDH3_k127_8002052_7 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000005233 59.0
BYDH3_k127_806708_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000211 251.0
BYDH3_k127_806708_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006142 252.0
BYDH3_k127_806708_2 to orf3 of fosmid clone 4B7mr3 - - - 0.0000000000000000000000000000000000000000000000003826 192.0
BYDH3_k127_806708_3 Predicted membrane protein (DUF2206) - - - 0.0000000000000000000000000000000008175 141.0
BYDH3_k127_8106711_0 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 421.0
BYDH3_k127_8106711_1 SPFH domain-Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007967 259.0
BYDH3_k127_812920_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 461.0
BYDH3_k127_812920_1 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000023 114.0
BYDH3_k127_812920_2 - - - - 0.00000002266 63.0
BYDH3_k127_8135471_0 Fructosamine kinase - - - 0.000000000000000000000000001646 124.0
BYDH3_k127_8135471_1 Psort location CytoplasmicMembrane, score - - - 0.00000002835 66.0
BYDH3_k127_8135471_2 Na H antiporter - - - 0.0000007732 52.0
BYDH3_k127_8135471_3 Inner membrane protein CreD K06143 - - 0.00008977 49.0
BYDH3_k127_8171838_0 Large family of predicted nucleotide-binding domains K07175 - - 2.922e-194 618.0
BYDH3_k127_8171838_1 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000901 211.0
BYDH3_k127_8205935_0 Triosephosphate isomerase K01803 - 5.3.1.1 0.0000000000000000000000000000000000000145 152.0
BYDH3_k127_8276608_0 Belongs to the helicase family. UvrD subfamily K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 445.0
BYDH3_k127_8276608_1 COGs COG1132 ABC-type multidrug transport system ATPase and permease components K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 323.0
BYDH3_k127_8276608_2 PFAM Exonuclease VII large subunit K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000001605 195.0
BYDH3_k127_8276608_3 Predicted membrane protein (DUF2207) - - - 0.0000000000000000007182 99.0
BYDH3_k127_8276608_4 Cytochrome b5-like Heme/Steroid binding domain K21735 GO:0001676,GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016705,GO:0016717,GO:0019752,GO:0032787,GO:0033559,GO:0042759,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0055114,GO:0071704,GO:0072330,GO:1901576 1.14.19.30 0.0000000004532 72.0
BYDH3_k127_8276608_5 KAP family P-loop domain - - - 0.00000009571 64.0
BYDH3_k127_8276608_7 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0004045 50.0
BYDH3_k127_8336873_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 593.0
BYDH3_k127_8336873_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000276 134.0
BYDH3_k127_8336873_2 Phosphoglycerate mutase family K15634,K15640 - 5.4.2.12 0.000000004584 62.0
BYDH3_k127_8453588_0 positive regulation of ATPase activity K11089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003101 250.0
BYDH3_k127_8453588_1 PFAM Type II secretion system protein E K02454 - - 0.0000001722 53.0
BYDH3_k127_8468554_0 Pfam Methyltransferase - - - 0.0000000000000000000000000000000000000003432 154.0
BYDH3_k127_8468554_1 Hypothetical methyltransferase - - - 0.00000000000000000000000000000000000009616 153.0
BYDH3_k127_8489600_0 Domain of unknown function (DUF4347) - - - 0.0000000000000000000000000000004246 145.0
BYDH3_k127_8520023_0 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01531,K01535 - 3.6.3.2,3.6.3.6 4.008e-194 626.0
BYDH3_k127_8520023_1 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01531,K01535 - 3.6.3.2,3.6.3.6 0.000000000000000000000000005617 118.0
BYDH3_k127_8520023_2 self proteolysis K09800,K11021,K13735 - - 0.0000002858 64.0
BYDH3_k127_8524249_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 452.0
BYDH3_k127_8524249_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0006355,GO:0006508,GO:0006515,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007371 279.0
BYDH3_k127_8632636_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003004 261.0
BYDH3_k127_8632636_1 Binds to the 23S rRNA K02876 - - 0.0000000000002038 76.0
BYDH3_k127_8632636_2 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:1901564,GO:1901566,GO:1901576 - 0.000000000006417 70.0
BYDH3_k127_8729623_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.000000000000000000000000000000000000000000000000000000000000000000000000001915 260.0
BYDH3_k127_8729623_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000002579 205.0
BYDH3_k127_8729623_2 DUF218 domain - - - 0.0009135 49.0
BYDH3_k127_8740148_0 PFAM Endonuclease Exonuclease phosphatase K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009723 329.0
BYDH3_k127_8740148_1 Probable RNA and SrmB- binding site of polymerase A K00970,K00974 - 2.7.7.19,2.7.7.72 0.0003371 47.0
BYDH3_k127_8743058_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000006936 93.0
BYDH3_k127_8748588_0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008588 420.0
BYDH3_k127_8748588_1 Kinase, PfkB family - - - 0.000000000000000000000000000000000000000000000000000000000006396 221.0
BYDH3_k127_8748588_2 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000001504 68.0
BYDH3_k127_8765484_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 347.0
BYDH3_k127_8765484_1 - - - - 0.00000000000000000000007964 104.0
BYDH3_k127_8765484_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000002812 64.0
BYDH3_k127_8775790_0 FeS assembly protein SufB K09014 - - 0.00000000000000000000000000000000002324 139.0
BYDH3_k127_8779763_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.000000000000000000000000000000000000000000000000000000000002944 226.0
BYDH3_k127_8787785_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 494.0
BYDH3_k127_8787785_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 434.0
BYDH3_k127_8787785_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000003519 260.0
BYDH3_k127_8872851_0 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008203 243.0
BYDH3_k127_8872851_1 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000004871 229.0
BYDH3_k127_8873556_0 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000007538 137.0
BYDH3_k127_902321_0 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000000000000000001031 242.0
BYDH3_k127_902321_1 FES K03575 - - 0.0000000000000000000000000000000000000000000000000004162 195.0
BYDH3_k127_902321_2 Peptidase family M3 K01414 - 3.4.24.70 0.000000000000000000009675 93.0
BYDH3_k127_9077474_0 Metal ABC transporter permease K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000001095 216.0
BYDH3_k127_9125568_0 Cellulose binding domain K01179,K05988 - 3.2.1.11,3.2.1.4 0.0000000000000000001746 104.0
BYDH3_k127_9125568_1 WD40 repeat, subgroup - - - 0.0000000000002174 75.0
BYDH3_k127_9125568_2 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000431 63.0
BYDH3_k127_9141125_0 - - - - 0.00000000000000000000001087 118.0
BYDH3_k127_9225171_0 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000002469 234.0
BYDH3_k127_9225171_1 PFAM von Willebrand factor type A K07114 - - 0.000000000008246 75.0
BYDH3_k127_9225171_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0001582 52.0
BYDH3_k127_9241312_0 PFAM SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002226 250.0
BYDH3_k127_9241312_1 NUDIX domain - - - 0.0000000000000000000000003329 111.0
BYDH3_k127_9290743_0 Cell shape determining protein, MreB Mrl family K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 392.0
BYDH3_k127_9290743_1 PDZ domain (Also known as DHR or GLGF) K11749 - - 0.000000000000000000000000000000001789 139.0
BYDH3_k127_9290743_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000008941 130.0
BYDH3_k127_9290743_3 DNA polymerase III K02341 - 2.7.7.7 0.00000001054 65.0
BYDH3_k127_9290743_4 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.00000006605 54.0
BYDH3_k127_9330080_0 cysteine-tRNA ligase activity K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 434.0
BYDH3_k127_9330080_1 transport protein CorA K03284 - - 0.000000000000000000000000000000007635 139.0
BYDH3_k127_9330080_2 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000536 54.0
BYDH3_k127_9330080_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00004365 55.0
BYDH3_k127_9450183_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 1.21e-282 889.0
BYDH3_k127_9450183_1 Hydroxypyruvate reductase K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000978 270.0
BYDH3_k127_9450183_2 Peptidase M50 - - - 0.0000000000000000003778 100.0
BYDH3_k127_9450183_3 IMG reference gene - - - 0.00000000003912 70.0
BYDH3_k127_9530953_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 3.537e-293 925.0
BYDH3_k127_9530953_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000002852 169.0
BYDH3_k127_9530953_2 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.0000000000000000007198 88.0
BYDH3_k127_9530953_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000149 53.0
BYDH3_k127_9597537_0 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000009159 191.0
BYDH3_k127_9597537_1 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000003227 178.0
BYDH3_k127_9597537_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000006023 147.0
BYDH3_k127_9597537_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000002542 145.0
BYDH3_k127_9597537_4 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000005346 81.0
BYDH3_k127_9597537_5 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000003338 76.0
BYDH3_k127_9597537_6 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.000877 44.0
BYDH3_k127_9662045_0 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000005509 123.0
BYDH3_k127_9662045_1 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000006132 108.0
BYDH3_k127_9662045_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000001191 106.0
BYDH3_k127_9662045_3 - - - - 0.00000001745 64.0
BYDH3_k127_9662045_4 - - - - 0.00000004854 65.0
BYDH3_k127_9668751_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000001898 248.0
BYDH3_k127_9668751_1 Psort location Cytoplasmic, score 9.97 K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000156 247.0
BYDH3_k127_9668751_2 dephospho-CoA kinase activity K00859,K08309,K10563 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24,3.2.2.23,4.2.99.18 0.0000000000000000000000000000003706 130.0
BYDH3_k127_9673861_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 322.0
BYDH3_k127_9673861_1 protein serine/threonine phosphatase activity K17500 GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0010564,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0033262,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090329,GO:0140096,GO:1901564,GO:2000112 3.1.3.16 0.000000005347 66.0
BYDH3_k127_9687938_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000432 287.0
BYDH3_k127_9743168_0 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 1.223e-242 778.0
BYDH3_k127_9743168_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004261 317.0
BYDH3_k127_9743168_2 membrane protein, required for N-linked glycosylation K07151 - 2.4.99.18 0.00000000000000000000000000000000002015 139.0
BYDH3_k127_9755420_0 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 419.0
BYDH3_k127_9755420_1 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000001294 218.0
BYDH3_k127_9755420_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000867 208.0
BYDH3_k127_9755420_3 Bacterial Ig-like domain - - - 0.0000000005308 65.0
BYDH3_k127_9767372_0 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000004625 246.0
BYDH3_k127_9767372_1 Cytochrome c biogenesis protein K06196 - - 0.000000000000000000000000000000000000000001138 165.0
BYDH3_k127_9767372_2 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000006733 164.0
BYDH3_k127_9767372_3 PFAM peptidase M14, carboxypeptidase A - - - 0.00000000000000000000000000002598 128.0
BYDH3_k127_9767372_4 PFAM peptidase M14, carboxypeptidase A - - - 0.0000000000000000000000000109 121.0
BYDH3_k127_9767372_5 EamA-like transporter family K08978 - - 0.000000000000000000001009 100.0
BYDH3_k127_9767372_6 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000006708 99.0
BYDH3_k127_9767372_7 GIY-YIG catalytic domain K07461 - - 0.000000000000000001005 89.0
BYDH3_k127_9767372_8 Probable zinc-ribbon domain - - - 0.0000000005633 67.0
BYDH3_k127_9800966_0 Cupin domain - - - 0.0000000000000000000000000000000000007612 143.0
BYDH3_k127_9800966_1 peptidoglycan-binding domain-containing protein - - - 0.0000000000000000004008 100.0
BYDH3_k127_9800966_2 EamA-like transporter family - - - 0.00000000000000001485 89.0
BYDH3_k127_9963949_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002939 277.0
BYDH3_k127_9963949_1 Membrane protein insertase, YidC Oxa1 family K03217 - - 0.00000000000000000000000000000002202 135.0
BYDH3_k127_9963949_2 Jag_N K06346 - - 0.000000000000001732 83.0
BYDH3_k127_9963949_3 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000001854 73.0
BYDH3_k127_9963949_4 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000007956 58.0
BYDH3_k127_9963949_5 ribonuclease P activity K03536,K08998 GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031123,GO:0031404,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 0.0005206 47.0