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Overview

ID MAG00197
Name BYDH3_bin.5
Sample SMP0006
Taxonomy
Kingdom Bacteria
Phylum Desulfobacterota
Class Desulfomonilia
Order UBA1062
Family UBA1062
Genus MWEI01
Species MWEI01 sp025454155
Assembly information
Completeness (%) 88.3
Contamination (%) 1.95
GC content (%) 58.0
N50 (bp) 10,720
Genome size (bp) 2,450,589

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2435

Gene name Description KEGG GOs EC E-value Score Sequence
BYDH3_k127_1007726_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 383.0
BYDH3_k127_1007726_1 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005507 373.0
BYDH3_k127_1007726_10 Belongs to the bacterial flagellin family K02397 - - 0.0000000000000000000000000000000001615 146.0
BYDH3_k127_1007726_11 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000004214 126.0
BYDH3_k127_1007726_12 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000008384 115.0
BYDH3_k127_1007726_13 Molybdopterin-guanine dinucleotide biosynthesis protein MobB K03753 - - 0.000000000000000000000546 102.0
BYDH3_k127_1007726_14 - - - - 0.000002324 57.0
BYDH3_k127_1007726_2 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000009425 238.0
BYDH3_k127_1007726_3 SMART PUA domain containing protein K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000001816 241.0
BYDH3_k127_1007726_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000003026 212.0
BYDH3_k127_1007726_5 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000001265 196.0
BYDH3_k127_1007726_6 HIT family K02503 - - 0.0000000000000000000000000000000000002358 143.0
BYDH3_k127_1007726_7 FliW protein K13626 - - 0.000000000000000000000000000000000009117 141.0
BYDH3_k127_1007726_8 PFAM cell wall hydrolase autolysin K01448 - 3.5.1.28 0.00000000000000000000000000000000005483 145.0
BYDH3_k127_1007726_9 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000001437 142.0
BYDH3_k127_10083634_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 509.0
BYDH3_k127_10083634_1 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 507.0
BYDH3_k127_10083634_10 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 302.0
BYDH3_k127_10083634_11 fumarylacetoacetate (FAA) hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006482 285.0
BYDH3_k127_10083634_12 Amino acid amide ABC transporter ATP-binding protein 2, HAAT family K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001487 274.0
BYDH3_k127_10083634_13 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000003777 269.0
BYDH3_k127_10083634_14 Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.000000000000000000000000000000000000000000000000001626 185.0
BYDH3_k127_10083634_15 PFAM Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000002464 165.0
BYDH3_k127_10083634_16 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000001151 160.0
BYDH3_k127_10083634_17 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950,K13940 - 2.7.6.3,4.1.2.25 0.0000000000000000000000000000008411 127.0
BYDH3_k127_10083634_18 - - - - 0.000000000000000000000000000001174 138.0
BYDH3_k127_10083634_19 outer membrane efflux protein - - - 0.00000000000000000000000001072 124.0
BYDH3_k127_10083634_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 477.0
BYDH3_k127_10083634_20 PFAM glutaredoxin K06191 - - 0.00000000000000000000001987 105.0
BYDH3_k127_10083634_21 serine threonine protein kinase - - - 0.00000000000000001009 91.0
BYDH3_k127_10083634_22 - - - - 0.00000000000000006106 84.0
BYDH3_k127_10083634_3 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006222 406.0
BYDH3_k127_10083634_4 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003023 360.0
BYDH3_k127_10083634_5 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 377.0
BYDH3_k127_10083634_6 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 351.0
BYDH3_k127_10083634_7 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000737 357.0
BYDH3_k127_10083634_8 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000585 318.0
BYDH3_k127_10083634_9 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 306.0
BYDH3_k127_10105571_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003412 502.0
BYDH3_k127_10105571_1 carbohydrate transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003025 415.0
BYDH3_k127_10105571_2 transcriptional regulator - - - 0.000000000000000009972 85.0
BYDH3_k127_10194597_0 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000000000000000000000000000000000001708 216.0
BYDH3_k127_10194597_1 Protein of unknown function (DUF1499) - - - 0.000000000000000000000000000000000005064 141.0
BYDH3_k127_10243615_0 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 505.0
BYDH3_k127_10243615_1 PFAM AMP-dependent synthetase and ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 508.0
BYDH3_k127_10243615_10 transcriptional regulator - - - 0.000000000000000000000000000000000000000001394 163.0
BYDH3_k127_10243615_12 OmpA-like transmembrane domain - - - 0.000000000000000009251 91.0
BYDH3_k127_10243615_2 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 466.0
BYDH3_k127_10243615_3 PFAM ABC transporter K01990,K01992,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 373.0
BYDH3_k127_10243615_4 HlyD family secretion protein K01993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 370.0
BYDH3_k127_10243615_5 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003971 300.0
BYDH3_k127_10243615_6 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000389 260.0
BYDH3_k127_10243615_7 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000003776 236.0
BYDH3_k127_10243615_8 PFAM phosphoesterase, PA-phosphatase related K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000001998 211.0
BYDH3_k127_10243615_9 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain - - - 0.0000000000000000000000000000000000000000001073 168.0
BYDH3_k127_10260845_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009807 385.0
BYDH3_k127_10260845_1 ATPase domain of DNA mismatch repair MUTS family K07456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 389.0
BYDH3_k127_10260845_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 365.0
BYDH3_k127_10260845_3 Glycerate kinase K11529 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016661,GO:0016662,GO:0016740,GO:0016772,GO:0043798,GO:0044237,GO:0055114 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 360.0
BYDH3_k127_10260845_4 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 302.0
BYDH3_k127_10260845_5 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00018 - 1.1.1.29 0.00000000000000000000000000000000000000000000000000000000000006867 225.0
BYDH3_k127_10260845_6 GatB Yqey domain protein K09117 - - 0.0000000000000000000000000001784 119.0
BYDH3_k127_10260845_7 Enolase, N-terminal domain K01689 - 4.2.1.11 0.0000000000000000000000004411 105.0
BYDH3_k127_10260845_8 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000006122 93.0
BYDH3_k127_10260845_9 - - - - 0.00004545 51.0
BYDH3_k127_10310141_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 516.0
BYDH3_k127_10310141_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 467.0
BYDH3_k127_10310141_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000001472 93.0
BYDH3_k127_10310141_3 FAD binding domain K21401 - 1.3.99.38 0.000000003637 70.0
BYDH3_k127_10313464_0 PFAM NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 1.5e-238 743.0
BYDH3_k127_10313464_1 acyl-coa dehydrogenase K08297 GO:0003674,GO:0003824,GO:0006066,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0016627,GO:0034308,GO:0034309,GO:0044281,GO:0044283,GO:0046165,GO:0052890,GO:0055114,GO:0071270,GO:0071271,GO:0071704,GO:1901576,GO:1901615,GO:1901617 1.3.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 560.0
BYDH3_k127_10313464_2 PFAM amidohydrolase 2 K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008833 556.0
BYDH3_k127_10313464_3 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 415.0
BYDH3_k127_10313464_4 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008354 361.0
BYDH3_k127_10313464_5 PFAM membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002169 284.0
BYDH3_k127_10313464_6 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.000000000000000000000000000000000000000000000000000000000000000004659 228.0
BYDH3_k127_10313464_7 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000385 190.0
BYDH3_k127_10313464_8 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.00000000000241 66.0
BYDH3_k127_10332190_0 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 301.0
BYDH3_k127_10332190_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000005506 236.0
BYDH3_k127_10332190_2 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000004499 160.0
BYDH3_k127_10332190_3 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000001988 106.0
BYDH3_k127_10332190_4 Periplasmic binding protein - - - 0.0000000000000424 85.0
BYDH3_k127_10371375_0 NAD(P)H-binding K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 500.0
BYDH3_k127_10371375_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 432.0
BYDH3_k127_10371375_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 434.0
BYDH3_k127_10371375_3 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 329.0
BYDH3_k127_10371375_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000673 280.0
BYDH3_k127_10371375_5 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000001166 171.0
BYDH3_k127_10371375_6 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000003725 160.0
BYDH3_k127_10371375_7 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.0000000000000000000000000000000000000002499 158.0
BYDH3_k127_10371375_8 four-way junction helicase activity K03550 GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009378,GO:0009379,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0031668,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051276,GO:0051289,GO:0051716,GO:0065003,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494 3.6.4.12 0.00000000000000000000000000000000007635 139.0
BYDH3_k127_10371375_9 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000002014 51.0
BYDH3_k127_10372093_0 Elongation factor Tu domain 2 K02355 - - 9.258e-220 701.0
BYDH3_k127_10372093_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007386 541.0
BYDH3_k127_10372093_10 flagellar motor switch protein FliG K02410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 314.0
BYDH3_k127_10372093_11 The M ring may be actively involved in energy transduction K02409 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000121 295.0
BYDH3_k127_10372093_12 Belongs to the SfsA family K06206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001145 259.0
BYDH3_k127_10372093_13 Radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000002304 239.0
BYDH3_k127_10372093_14 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000001872 220.0
BYDH3_k127_10372093_15 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000001511 214.0
BYDH3_k127_10372093_16 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.00000000000000000000000000000000000000000000000000000000008514 213.0
BYDH3_k127_10372093_17 TIGRFAM molybdenum cofactor synthesis - - - 0.00000000000000000000000000000000000000000000000000000007664 206.0
BYDH3_k127_10372093_18 phosphate transport regulator (Distant homolog of PhoU) K07220 - - 0.000000000000000000000000000000000000000000000000345 182.0
BYDH3_k127_10372093_19 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP - - - 0.0000000000000000000000000000000000000000002343 176.0
BYDH3_k127_10372093_2 Flagellar protein export ATPase FliI K02412 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 537.0
BYDH3_k127_10372093_20 TIGRFAM DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.0000000000000000000000000000000000000006029 160.0
BYDH3_k127_10372093_21 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000000000000000000008629 149.0
BYDH3_k127_10372093_22 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000193 151.0
BYDH3_k127_10372093_23 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000003859 160.0
BYDH3_k127_10372093_24 4Fe-4S dicluster domain K00171 - 1.2.7.1 0.00000000000000000000000000000000003861 136.0
BYDH3_k127_10372093_25 Smr domain - - - 0.0000000000000000000000000000000007734 137.0
BYDH3_k127_10372093_26 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000002014 132.0
BYDH3_k127_10372093_27 Segregation and condensation protein ScpA K05896 - - 0.00000000000000000000000000000005738 134.0
BYDH3_k127_10372093_28 - - - - 0.0000000000000000000000000002409 120.0
BYDH3_k127_10372093_29 Belongs to the bacterial histone-like protein family K05788 - - 0.00000000000000000000000003693 111.0
BYDH3_k127_10372093_3 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005077 537.0
BYDH3_k127_10372093_30 Flagellar assembly protein FliH K02411 - - 0.00000000000000000001897 100.0
BYDH3_k127_10372093_31 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.0000000000000000004006 91.0
BYDH3_k127_10372093_32 PFAM MgtE intracellular - - - 0.0000000000001082 78.0
BYDH3_k127_10372093_33 Flagellar hook-basal body complex protein FliE K02408 - - 0.0000000000001773 74.0
BYDH3_k127_10372093_34 peptidyl-tyrosine sulfation - - - 0.00000006261 66.0
BYDH3_k127_10372093_35 Flagellar FliJ protein K02413 - - 0.00001365 53.0
BYDH3_k127_10372093_36 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - GO:0005575,GO:0005623,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043933,GO:0044085,GO:0044464,GO:0051259,GO:0051260,GO:0051301,GO:0065003,GO:0071840 - 0.00048 51.0
BYDH3_k127_10372093_4 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004603 459.0
BYDH3_k127_10372093_5 ferredoxin oxidoreductase K00169 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 447.0
BYDH3_k127_10372093_6 PFAM aminoacyl-tRNA synthetase class Ib K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 413.0
BYDH3_k127_10372093_7 ferredoxin oxidoreductase beta subunit K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 400.0
BYDH3_k127_10372093_8 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 379.0
BYDH3_k127_10372093_9 Bacterial regulatory protein, Fis family K10943 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 358.0
BYDH3_k127_10399172_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 439.0
BYDH3_k127_10399172_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 309.0
BYDH3_k127_10399172_10 NlpC p60 family K19224,K21471 - - 0.0000000000000000000000000000038 131.0
BYDH3_k127_10399172_11 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.000000000000000000000008652 106.0
BYDH3_k127_10399172_12 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.0000000000000000000005382 105.0
BYDH3_k127_10399172_13 - - - - 0.000000000001965 71.0
BYDH3_k127_10399172_2 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003028 287.0
BYDH3_k127_10399172_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002315 283.0
BYDH3_k127_10399172_4 peptidyl-prolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000001761 277.0
BYDH3_k127_10399172_5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000003139 165.0
BYDH3_k127_10399172_6 Zincin-like metallopeptidase - - - 0.00000000000000000000000000000000000001071 149.0
BYDH3_k127_10399172_7 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000002371 153.0
BYDH3_k127_10399172_8 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000007698 141.0
BYDH3_k127_10399172_9 sporulation resulting in formation of a cellular spore K01449 - 3.5.1.28 0.000000000000000000000000000002808 129.0
BYDH3_k127_10408193_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 379.0
BYDH3_k127_10408193_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000002065 158.0
BYDH3_k127_10408193_2 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000001533 76.0
BYDH3_k127_10548695_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain - - - 1.061e-242 767.0
BYDH3_k127_10548695_1 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 553.0
BYDH3_k127_10548695_2 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 385.0
BYDH3_k127_10548695_3 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 338.0
BYDH3_k127_10548695_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000007215 239.0
BYDH3_k127_10548695_5 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000005505 230.0
BYDH3_k127_10548695_6 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000008186 204.0
BYDH3_k127_10548695_7 Protein of unknown function (DUF3108) - - - 0.0002529 52.0
BYDH3_k127_10590411_0 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 406.0
BYDH3_k127_10590411_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005938 349.0
BYDH3_k127_10590411_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 325.0
BYDH3_k127_10596497_0 acyl-CoA dehydrogenase - - - 1.493e-216 687.0
BYDH3_k127_10596497_1 PFAM Acetyl-CoA hydrolase transferase K18122 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 457.0
BYDH3_k127_10596497_2 long-chain fatty acid transport protein - - - 0.0000000000000003712 81.0
BYDH3_k127_1065684_0 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 472.0
BYDH3_k127_1065684_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000008169 170.0
BYDH3_k127_1065684_2 methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000002869 125.0
BYDH3_k127_1065684_3 Domain of unknown function(DUF2779) - - - 0.0002152 45.0
BYDH3_k127_10666376_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 4.775e-254 817.0
BYDH3_k127_10666376_1 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 GO:0000302,GO:0003674,GO:0003824,GO:0004601,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016661,GO:0016684,GO:0042221,GO:0042493,GO:0042542,GO:0046677,GO:0050418,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748 1.7.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 293.0
BYDH3_k127_10666376_2 Phospholipase, patatin family K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002603 281.0
BYDH3_k127_10666376_3 Haemolysin-III related K11068 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000154 253.0
BYDH3_k127_10666376_4 Collagenase K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000003604 235.0
BYDH3_k127_10666376_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000006908 160.0
BYDH3_k127_10666376_6 Matrixin - - - 0.000000000000000000000000001303 124.0
BYDH3_k127_10666376_7 Belongs to the P(II) protein family K04751,K04752 - - 0.000000000001889 71.0
BYDH3_k127_10666376_8 OmpA-like transmembrane domain - - - 0.000000008931 63.0
BYDH3_k127_10666376_9 - - - - 0.0002934 48.0
BYDH3_k127_10716547_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000005884 233.0
BYDH3_k127_10716547_1 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000001226 209.0
BYDH3_k127_10731560_0 ImcF-related N-terminal domain K11891 - - 5e-323 1029.0
BYDH3_k127_10731560_1 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE K11893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 534.0
BYDH3_k127_10731560_2 ImpA, N-terminal, type VI secretion system K11902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006484 290.0
BYDH3_k127_10731560_3 Type VI secretion system protein DotU K11892 - - 0.0000000000000000000000000000000000000000000000000000000000001193 219.0
BYDH3_k127_10731560_4 Protein of avirulence locus involved in temperature-dependent protein secretion K03217,K11898 - - 0.0000000000000000000000000000000000000000000002494 177.0
BYDH3_k127_10731560_5 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 - - - 0.0000000000000000000000000000000000000000000008491 171.0
BYDH3_k127_10731560_6 - - - - 0.0000000000000000000000000000000001836 137.0
BYDH3_k127_10731560_7 ImpA, N-terminal, type VI secretion system K11910 - - 0.00000000000000000000000000001996 134.0
BYDH3_k127_1075539_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006288 402.0
BYDH3_k127_1075539_1 PFAM Hydantoinase oxoprolinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 388.0
BYDH3_k127_1075539_2 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000001938 224.0
BYDH3_k127_1075539_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000455 167.0
BYDH3_k127_1075539_4 pilus assembly protein PilE K02655 - - 0.00000000005406 69.0
BYDH3_k127_1075539_5 His Kinase A (phosphoacceptor) domain - - - 0.0009117 51.0
BYDH3_k127_10824662_0 - - - - 2.625e-202 637.0
BYDH3_k127_10824662_1 Belongs to the glycosyl hydrolase family 6 K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 332.0
BYDH3_k127_10824662_2 cellulase activity - - - 0.0000000000000000005067 101.0
BYDH3_k127_10824662_3 GtrA-like protein - - - 0.00000000000002886 77.0
BYDH3_k127_10831765_0 Domain of unknown function (DUF1846) - - - 1.588e-269 839.0
BYDH3_k127_10831765_1 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009121 604.0
BYDH3_k127_10831765_10 Belongs to the peptidase S1C family K04771,K04772 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008272 389.0
BYDH3_k127_10831765_11 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006612 342.0
BYDH3_k127_10831765_12 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 297.0
BYDH3_k127_10831765_13 TIGRFAM glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001341 289.0
BYDH3_k127_10831765_14 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001889 278.0
BYDH3_k127_10831765_15 PFAM Class II aldolase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000001756 262.0
BYDH3_k127_10831765_16 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000003792 241.0
BYDH3_k127_10831765_17 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001749 261.0
BYDH3_k127_10831765_18 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000003209 230.0
BYDH3_k127_10831765_19 - - - - 0.00000000000000000000000000000000000000000000000000000000000001525 225.0
BYDH3_k127_10831765_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 533.0
BYDH3_k127_10831765_20 Dihydrouridine synthase (Dus) - - - 0.000000000000000000000000000000000000000000000000000000000001694 220.0
BYDH3_k127_10831765_21 queuosine metabolic process K04068,K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 1.97.1.4,4.3.99.3 0.00000000000000000000000000000000000000000000000000000000007613 210.0
BYDH3_k127_10831765_22 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000002356 212.0
BYDH3_k127_10831765_23 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00112 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000004996 217.0
BYDH3_k127_10831765_24 Peptidoglycan-synthase activator LpoB K07337 - - 0.00000000000000000000000000000000000000000000000000000001832 205.0
BYDH3_k127_10831765_25 PFAM Tetratricopeptide TPR_2 repeat protein K09859 - - 0.00000000000000000000000000000000000000000000000000000426 208.0
BYDH3_k127_10831765_26 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000001884 166.0
BYDH3_k127_10831765_27 methyltransferase - - - 0.00000000000000000000000000000000000000004929 164.0
BYDH3_k127_10831765_28 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000006743 163.0
BYDH3_k127_10831765_29 Thioredoxin K03671 - - 0.00000000000000000000000000001255 121.0
BYDH3_k127_10831765_3 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 542.0
BYDH3_k127_10831765_30 Phospholipid methyltransferase - - - 0.0000000000000000000000003035 112.0
BYDH3_k127_10831765_31 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000002728 78.0
BYDH3_k127_10831765_33 - - - - 0.0000005665 55.0
BYDH3_k127_10831765_34 Protein of unknown function (DUF1425) - - - 0.000008218 53.0
BYDH3_k127_10831765_4 Acyl-CoA dehydrogenase type 2 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 515.0
BYDH3_k127_10831765_5 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 511.0
BYDH3_k127_10831765_6 PFAM RNA binding S1 domain protein K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 489.0
BYDH3_k127_10831765_7 phosphoglycerate mutase K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 474.0
BYDH3_k127_10831765_8 BFD domain protein 2Fe-2S -binding domain protein K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005337 451.0
BYDH3_k127_10831765_9 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 421.0
BYDH3_k127_10831958_0 drug transmembrane transporter activity K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 592.0
BYDH3_k127_10831958_1 transcription factor binding K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 443.0
BYDH3_k127_10831958_10 TIGRFAM LAO AO transport system ATPase K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007282 273.0
BYDH3_k127_10831958_11 MazG nucleotide pyrophosphohydrolase domain K02428,K02499 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000003723 266.0
BYDH3_k127_10831958_12 Dienelactone hydrolase family K07020 - - 0.0000000000000000000000000000000000000000000000000000004331 200.0
BYDH3_k127_10831958_13 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000001756 200.0
BYDH3_k127_10831958_14 B12 binding domain K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000001931 186.0
BYDH3_k127_10831958_15 Zn-dependent hydrolase, glyoxylase - - - 0.00000000000000000000000000000000000000000003958 175.0
BYDH3_k127_10831958_16 methionine biosynthesis protein (MetW) - - - 0.000000000000000000000000000000000000000000483 164.0
BYDH3_k127_10831958_17 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000002262 117.0
BYDH3_k127_10831958_18 PFAM nitrogen-fixing NifU domain protein - - - 0.000000000000000000001403 97.0
BYDH3_k127_10831958_2 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 428.0
BYDH3_k127_10831958_3 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 404.0
BYDH3_k127_10831958_4 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 362.0
BYDH3_k127_10831958_5 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 357.0
BYDH3_k127_10831958_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006885 321.0
BYDH3_k127_10831958_7 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 317.0
BYDH3_k127_10831958_8 PFAM phospholipid glycerol acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 305.0
BYDH3_k127_10831958_9 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 286.0
BYDH3_k127_10890002_0 LppC putative lipoprotein K07121 - - 0.000000000000000000000000000000000000000018 168.0
BYDH3_k127_10890002_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000000000000000000002826 128.0
BYDH3_k127_10962179_0 synthetase K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000003408 245.0
BYDH3_k127_10962179_1 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000417 199.0
BYDH3_k127_10962179_2 BioY family K03523 - - 0.00000000000000000000000000000000000000001452 164.0
BYDH3_k127_10962179_3 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000004139 127.0
BYDH3_k127_10962179_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000001558 68.0
BYDH3_k127_1099201_0 dipeptide transport K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 391.0
BYDH3_k127_1099201_1 Bacterial extracellular solute-binding protein K02064 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 296.0
BYDH3_k127_11001538_0 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 367.0
BYDH3_k127_11001538_1 Electron transfer flavoprotein, alpha subunit K03522,K22432 - 1.3.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 325.0
BYDH3_k127_11001538_2 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000005425 129.0
BYDH3_k127_11002491_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1238.0
BYDH3_k127_11002491_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000001157 235.0
BYDH3_k127_11002491_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000006598 217.0
BYDH3_k127_11002491_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000003351 199.0
BYDH3_k127_11035986_0 Pyridine nucleotide-disulphide oxidoreductase K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008039 512.0
BYDH3_k127_11035986_1 4Fe-4S ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 464.0
BYDH3_k127_11035986_2 PFAM Sporulation stage II, protein E C-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 302.0
BYDH3_k127_11035986_3 - - - - 0.0000000000000000000000000000000000002929 144.0
BYDH3_k127_11035986_4 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.00000000000000001019 86.0
BYDH3_k127_11035986_5 Nitroreductase - - - 0.00000000000003256 73.0
BYDH3_k127_11069353_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 531.0
BYDH3_k127_11069353_1 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000006969 223.0
BYDH3_k127_11069353_2 PFAM ATP-binding region ATPase domain protein K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000003143 197.0
BYDH3_k127_11069353_3 PFAM OmpA MotB domain protein K03640 - - 0.0000000000000000000000000000000000000000001273 166.0
BYDH3_k127_11069353_4 PFAM MotA TolQ ExbB proton channel K03561,K03562 - - 0.000000000000000000000000000000000000000001446 165.0
BYDH3_k127_11069353_5 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000002458 130.0
BYDH3_k127_11069353_6 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.000000000000000000000000001058 119.0
BYDH3_k127_11069353_7 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000000005033 99.0
BYDH3_k127_11069353_8 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000003367 59.0
BYDH3_k127_11069353_9 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0001067 54.0
BYDH3_k127_11076784_0 cyclic 2,3-diphosphoglycerate synthetase activity - - - 1.945e-209 661.0
BYDH3_k127_11076784_1 Amino acid kinase family K00926 - 2.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 408.0
BYDH3_k127_11076784_2 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000004645 161.0
BYDH3_k127_11076784_3 - - - - 0.0000000000000000000000000000000000000000006356 161.0
BYDH3_k127_11076784_4 triphosphatase activity K18446 - 3.6.1.25 0.00000003376 61.0
BYDH3_k127_11103723_0 Chorismate mutase type II K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007987 294.0
BYDH3_k127_11103723_1 Penicillin-binding Protein - - - 0.000000000000000000000000000000000000000000000000000005499 205.0
BYDH3_k127_11103723_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000001383 177.0
BYDH3_k127_11103723_3 TIGRFAM conserved - - - 0.0000000000000000000000000000000000000004756 168.0
BYDH3_k127_11103723_4 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000001202 97.0
BYDH3_k127_11103723_5 Sel1-like repeats. K07126 - - 0.000000000000000002267 91.0
BYDH3_k127_11103723_6 helix_turn_helix, Lux Regulon - - - 0.000000000000002712 90.0
BYDH3_k127_11103723_7 Major facilitator Superfamily - - - 0.000004869 49.0
BYDH3_k127_11133524_0 PFAM AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000408 513.0
BYDH3_k127_11133524_1 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 399.0
BYDH3_k127_11133524_2 PFAM NAD dependent epimerase dehydratase family K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 393.0
BYDH3_k127_11133524_3 PFAM CoA-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 356.0
BYDH3_k127_11133524_4 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001062 282.0
BYDH3_k127_11133524_5 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000007532 89.0
BYDH3_k127_11159411_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000002335 245.0
BYDH3_k127_11159411_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000003196 203.0
BYDH3_k127_11159411_2 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000001717 133.0
BYDH3_k127_11187577_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1201.0
BYDH3_k127_11187577_1 TIGRFAM anaerobic ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 0.0 1060.0
BYDH3_k127_11187577_10 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000003178 153.0
BYDH3_k127_11187577_11 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000163 126.0
BYDH3_k127_11187577_12 OmpA family K02557 - - 0.0000000000000000001183 100.0
BYDH3_k127_11187577_13 Predicted permease YjgP/YjgQ family K07091 - - 0.000000000000000006403 96.0
BYDH3_k127_11187577_15 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000001681 75.0
BYDH3_k127_11187577_16 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000134 60.0
BYDH3_k127_11187577_17 Permease, YjgP YjgQ family K11720 - - 0.00000002783 66.0
BYDH3_k127_11187577_2 Coenzyme A transferase K01026 - 2.8.3.1 1.685e-285 891.0
BYDH3_k127_11187577_3 FAD binding domain K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 501.0
BYDH3_k127_11187577_4 PFAM AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006336 488.0
BYDH3_k127_11187577_5 Domain of unknown function (DUF3473) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007585 309.0
BYDH3_k127_11187577_6 ATPase family associated with various cellular activities (AAA) K03924 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 300.0
BYDH3_k127_11187577_7 SMART PAS domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008294 305.0
BYDH3_k127_11187577_8 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001291 293.0
BYDH3_k127_11187577_9 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000571 238.0
BYDH3_k127_11190599_0 geranylgeranyl reductase activity - - - 0.00000000000000000000000000000000000001336 156.0
BYDH3_k127_11190599_1 - - - - 0.000000000000000000000000000000004943 143.0
BYDH3_k127_11190599_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000003329 65.0
BYDH3_k127_1119789_0 Inorganic H+ pyrophosphatase K15987 - 3.6.1.1 7.08e-223 699.0
BYDH3_k127_1119789_1 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 1.205e-195 616.0
BYDH3_k127_1119789_2 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 471.0
BYDH3_k127_1119789_3 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 399.0
BYDH3_k127_1119789_4 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 347.0
BYDH3_k127_1119789_5 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 321.0
BYDH3_k127_1119789_6 PFAM short chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 299.0
BYDH3_k127_1119789_7 BadF/BadG/BcrA/BcrD ATPase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000091 294.0
BYDH3_k127_1122231_0 PFAM Beta propeller domain K14475 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002472 279.0
BYDH3_k127_1122231_1 tigr02147 - - - 0.00000000000000000000000000000000000000005569 162.0
BYDH3_k127_11256156_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase K02182 - 6.2.1.48 3.903e-246 774.0
BYDH3_k127_11256156_1 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 576.0
BYDH3_k127_11256156_2 Belongs to the thiolase family K07550 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007917 566.0
BYDH3_k127_11256156_3 Uncharacterized protein containing a ferredoxin domain (DUF2148) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 367.0
BYDH3_k127_11256156_4 Uncharacterized protein containing a ferredoxin domain (DUF2148) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 306.0
BYDH3_k127_11256156_5 PFAM Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000001792 211.0
BYDH3_k127_11256156_6 SCP-2 sterol transfer family - - - 0.0000000000000000000000000000000000000000000001313 173.0
BYDH3_k127_11347584_0 lysine 2,3-aminomutase activity K01843,K19810 - 5.4.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009632 540.0
BYDH3_k127_11347584_1 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 409.0
BYDH3_k127_11347584_2 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 385.0
BYDH3_k127_11347584_3 HlyD family secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 331.0
BYDH3_k127_11347584_4 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 293.0
BYDH3_k127_11347584_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000004302 210.0
BYDH3_k127_11347584_6 Chemotaxis phosphatase CheX K03409 - - 0.00000000000000000000000000000000000000000000000000000797 197.0
BYDH3_k127_11347584_7 acetyltransferase K18815 - 2.3.1.82 0.000000000000000000000000000000000000000000000000002701 187.0
BYDH3_k127_11347584_8 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00003522 46.0
BYDH3_k127_11371244_0 flagellar motor switch protein FliM K02416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 351.0
BYDH3_k127_11371244_1 MutS domain I K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004652 289.0
BYDH3_k127_11371244_10 - - - - 0.000000003481 67.0
BYDH3_k127_11371244_2 Plays a role in the flagellum-specific transport system K02419 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007774 282.0
BYDH3_k127_11371244_3 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000003824 164.0
BYDH3_k127_11371244_4 PFAM surface presentation of antigens (SPOA) protein K02417 - - 0.000000000000000000000000000000000000000415 154.0
BYDH3_k127_11371244_5 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.00000000000000000000000000000002652 132.0
BYDH3_k127_11371244_6 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.000000000000000000000000000001307 124.0
BYDH3_k127_11371244_7 Bacterial export proteins, family 3 K02420 - - 0.00000000000000000000005338 105.0
BYDH3_k127_11371244_8 PFAM OmpA MotB domain protein K02557 - - 0.00000000000004946 73.0
BYDH3_k127_11371244_9 flagellar K02418 - - 0.000000002987 63.0
BYDH3_k127_11428520_0 pyruvate phosphate dikinase - - - 0.0 1149.0
BYDH3_k127_11428520_1 glutamate dehydrogenase [NAD(P)+] activity K00262 - 1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006167 575.0
BYDH3_k127_11442940_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016465,GO:0018995,GO:0020003,GO:0023051,GO:0023056,GO:0030430,GO:0032991,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051082,GO:0061077,GO:0065007,GO:0065010,GO:0101031,GO:1901222,GO:1901224,GO:1902531,GO:1902533,GO:1990220,GO:2000535 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005998 288.0
BYDH3_k127_11442940_1 Nucleotidyltransferase domain K07075 - - 0.000000000000000000000000000000009518 129.0
BYDH3_k127_11442940_2 repeat protein - - - 0.000000000000000000000000000001995 128.0
BYDH3_k127_11442940_3 Protein of unknown function DUF86 - - - 0.000000000000000000000000000007962 122.0
BYDH3_k127_11442940_4 - - - - 0.0000000000000001024 80.0
BYDH3_k127_11510872_0 PFAM 4-hydroxyphenylacetate 3-hydroxylase N terminal K14534 - 4.2.1.120,5.3.3.3 4.67e-258 802.0
BYDH3_k127_11510872_1 Conserved region in glutamate synthase - - - 3.995e-237 738.0
BYDH3_k127_11510872_2 PFAM Acetyl-CoA hydrolase transferase K18122 - - 3.181e-205 647.0
BYDH3_k127_11510872_3 PFAM Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 473.0
BYDH3_k127_11510872_4 Ribonuclease R winged-helix domain K09720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 404.0
BYDH3_k127_11510872_5 Conserved region in glutamate synthase - - - 0.000000000000000000000000000000000000000000000004637 174.0
BYDH3_k127_11510872_6 - - - - 0.000000000000006721 80.0
BYDH3_k127_11510872_7 Aminotransferase class-III K00823,K07250 - 2.6.1.19,2.6.1.22 0.00000004705 55.0
BYDH3_k127_11521889_0 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 606.0
BYDH3_k127_11521889_1 PFAM Bile acid sodium symporter K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 535.0
BYDH3_k127_11521889_2 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 481.0
BYDH3_k127_11521889_3 methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000004693 204.0
BYDH3_k127_11521889_4 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000001244 176.0
BYDH3_k127_11521889_5 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.0000000000000000000000000000000216 133.0
BYDH3_k127_11521889_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000002257 68.0
BYDH3_k127_11521889_7 Belongs to the short-chain dehydrogenases reductases (SDR) family K03366 - 1.1.1.304,1.1.1.76 0.00000005064 59.0
BYDH3_k127_11544518_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1538.0
BYDH3_k127_11544518_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0 1180.0
BYDH3_k127_11544518_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 2.479e-239 745.0
BYDH3_k127_11544518_3 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 3.021e-231 722.0
BYDH3_k127_11544518_4 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K00972 - 2.7.7.23,2.7.7.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 530.0
BYDH3_k127_11544518_5 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 484.0
BYDH3_k127_11544518_6 Glucosamine-6-phosphate deaminase K02564 - 3.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 442.0
BYDH3_k127_11544518_7 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 338.0
BYDH3_k127_11544518_8 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 306.0
BYDH3_k127_11544518_9 glutamate synthase alpha subunit domain protein - - - 0.00000000000000000000000000000002594 126.0
BYDH3_k127_11558047_0 ferrous iron transmembrane transporter activity K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 376.0
BYDH3_k127_11558047_1 Ferric uptake regulator family K03711 - - 0.00000000000000000000000001536 116.0
BYDH3_k127_11558047_2 PFAM FeoA K04758 - - 0.0000001698 57.0
BYDH3_k127_11558047_3 Bacterial regulatory proteins, tetR family - - - 0.000001164 51.0
BYDH3_k127_11572891_0 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 370.0
BYDH3_k127_1159587_0 PFAM glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000947 454.0
BYDH3_k127_1159587_1 glycyl-tRNA aminoacylation K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 411.0
BYDH3_k127_1159587_2 Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000004395 229.0
BYDH3_k127_1159587_3 Involved in DNA repair and RecF pathway recombination K03474,K03584 GO:0008150,GO:0009314,GO:0009628,GO:0050896 2.6.99.2 0.0000000000000000004447 97.0
BYDH3_k127_1159587_4 Domain of unknown function (DUF4115) K15539 - - 0.0003759 49.0
BYDH3_k127_11637415_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 597.0
BYDH3_k127_11637415_1 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005561 535.0
BYDH3_k127_11637415_10 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000013 175.0
BYDH3_k127_11637415_11 glycolate biosynthetic process K01091,K07025 - 3.1.3.18 0.000000000000000000000000000000002341 139.0
BYDH3_k127_11637415_12 Lipid A biosynthesis K02517 - 2.3.1.241 0.000000000000000000000000000000008364 140.0
BYDH3_k127_11637415_13 Flagellar basal body rod FlgEFG protein C-terminal K02391,K02392 - - 0.0000000000000000000000002719 110.0
BYDH3_k127_11637415_14 Outer membrane protein (OmpH-like) K06142 - - 0.0000000000000000001237 97.0
BYDH3_k127_11637415_15 PFAM AMMECR1 domain protein K09141 - - 0.00000000000000001315 92.0
BYDH3_k127_11637415_16 amino acid abc transporter K01999 - - 0.000000000000003241 88.0
BYDH3_k127_11637415_17 Kdo2-lipid A biosynthetic process K02517 - 2.3.1.241 0.0000000006915 65.0
BYDH3_k127_11637415_18 Anti-sigma-28 factor, FlgM K02398 - - 0.00005876 49.0
BYDH3_k127_11637415_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 490.0
BYDH3_k127_11637415_3 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007459 359.0
BYDH3_k127_11637415_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 315.0
BYDH3_k127_11637415_5 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 313.0
BYDH3_k127_11637415_6 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 289.0
BYDH3_k127_11637415_7 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000001975 270.0
BYDH3_k127_11637415_8 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000008315 237.0
BYDH3_k127_11637415_9 D,d-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000004661 174.0
BYDH3_k127_11680895_0 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000000000000001789 188.0
BYDH3_k127_11680895_1 Putative glycosyl hydrolase domain - - - 0.000000000000000000000000000000000000000004899 171.0
BYDH3_k127_11680895_2 Domain of unknown function (DUF374) K09778 - - 0.00000000000000001052 84.0
BYDH3_k127_11680895_3 PFAM regulatory protein TetR K13770 - - 0.000000004553 60.0
BYDH3_k127_11698172_0 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 2.405e-292 917.0
BYDH3_k127_11698172_1 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 509.0
BYDH3_k127_11698172_2 PFAM Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 314.0
BYDH3_k127_11698172_3 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000002835 244.0
BYDH3_k127_11698172_4 methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000001543 157.0
BYDH3_k127_11698172_5 Belongs to the Fur family K03711,K09825 - - 0.0000000000000000000000000000000002855 136.0
BYDH3_k127_11698172_6 Thioredoxin-like - - - 0.000000000000000000000000008176 116.0
BYDH3_k127_11698172_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000008384 54.0
BYDH3_k127_11714835_0 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 310.0
BYDH3_k127_11714835_1 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 300.0
BYDH3_k127_11714835_2 dEAD DEAH box helicase K06877 - - 0.00000000000000000000000000000000005499 136.0
BYDH3_k127_11714835_3 RNase_H superfamily K07502 - - 0.00000000000000000001828 94.0
BYDH3_k127_1175067_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 518.0
BYDH3_k127_1175067_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 404.0
BYDH3_k127_1175067_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 320.0
BYDH3_k127_11759778_0 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 3.43e-303 945.0
BYDH3_k127_11759778_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 520.0
BYDH3_k127_11759778_10 Chromosome partitioning protein ParA K03496 - - 0.0000000000000000000000000000000000000000000000000000000006325 216.0
BYDH3_k127_11759778_11 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000001075 201.0
BYDH3_k127_11759778_12 Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000002547 188.0
BYDH3_k127_11759778_13 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000001194 195.0
BYDH3_k127_11759778_14 TfoX N-terminal domain - - - 0.000000000002767 74.0
BYDH3_k127_11759778_15 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K04562 - - 0.000004676 57.0
BYDH3_k127_11759778_2 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008156 456.0
BYDH3_k127_11759778_3 Major Facilitator Superfamily K08177 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 447.0
BYDH3_k127_11759778_4 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003723 379.0
BYDH3_k127_11759778_5 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008207 358.0
BYDH3_k127_11759778_6 PFAM 4Fe-4S ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004408 272.0
BYDH3_k127_11759778_7 PFAM Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000935 236.0
BYDH3_k127_11759778_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000399 218.0
BYDH3_k127_11759778_9 PFAM Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000005038 214.0
BYDH3_k127_11802159_0 Pyrimidine dimer DNA glycosylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001696 251.0
BYDH3_k127_11802159_1 Heavy-metal resistance - - - 0.0000000000000000000000311 105.0
BYDH3_k127_11816855_0 PFAM Peptidoglycan-binding domain 1 protein K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003938 278.0
BYDH3_k127_11816855_1 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000000001505 186.0
BYDH3_k127_11816855_2 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000002978 141.0
BYDH3_k127_11842517_0 COG2366 Protein related to penicillin acylase K01434,K07116 - 3.5.1.11,3.5.1.97 3.617e-264 838.0
BYDH3_k127_11842517_1 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005255 469.0
BYDH3_k127_11842517_2 Pfam:UPF0118 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 341.0
BYDH3_k127_11842517_3 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003613 322.0
BYDH3_k127_11842517_4 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000003206 151.0
BYDH3_k127_11842517_5 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000000000001201 147.0
BYDH3_k127_11842517_6 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000007324 162.0
BYDH3_k127_11842517_7 - - - - 0.0000000000000000000002366 102.0
BYDH3_k127_11899635_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003253 278.0
BYDH3_k127_11899635_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000001746 198.0
BYDH3_k127_11899635_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.000000004176 66.0
BYDH3_k127_12011034_0 PFAM CoA-binding domain protein K01905,K09181,K22224 - 6.2.1.13 4.555e-232 738.0
BYDH3_k127_12011034_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001484 269.0
BYDH3_k127_12011034_10 SNARE associated Golgi protein - - - 0.0000000001926 70.0
BYDH3_k127_12011034_2 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000001769 276.0
BYDH3_k127_12011034_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001357 271.0
BYDH3_k127_12011034_4 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000005657 210.0
BYDH3_k127_12011034_5 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000007892 173.0
BYDH3_k127_12011034_6 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000007148 172.0
BYDH3_k127_12011034_7 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000304 126.0
BYDH3_k127_12011034_8 - - - - 0.000000000000000003496 89.0
BYDH3_k127_12011034_9 PFAM Biotin lipoate A B protein ligase family K03800 - 6.3.1.20 0.000000000000000006786 93.0
BYDH3_k127_12077475_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029,K10002 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 606.0
BYDH3_k127_12077475_1 belongs to the bacterial solute-binding protein 3 family K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004215 403.0
BYDH3_k127_12077475_2 PFAM ABC transporter related K02028,K10004 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004388 386.0
BYDH3_k127_12077475_3 PFAM Extracellular solute-binding protein, family 3 K02030,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 374.0
BYDH3_k127_12077475_4 PFAM ABC transporter related K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 369.0
BYDH3_k127_12077475_5 PFAM binding-protein-dependent transport systems inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005858 340.0
BYDH3_k127_12077475_6 amino acid ABC transporter K02029 - - 0.0000000000000000000000000000000000005906 140.0
BYDH3_k127_12077475_7 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000001291 131.0
BYDH3_k127_12077475_8 Transcriptional regulator, TetR family - - - 0.000000000000000000000008925 111.0
BYDH3_k127_12077475_9 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.00000002746 56.0
BYDH3_k127_12129365_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008533 297.0
BYDH3_k127_12129365_1 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002701 267.0
BYDH3_k127_12153264_0 Threonyl and Alanyl tRNA synthetase second additional domain K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.274e-257 807.0
BYDH3_k127_12153264_1 Virulence protein RhuM family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007712 350.0
BYDH3_k127_12153264_2 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) K05967 - - 0.00000000000000000000000000000000000000004191 160.0
BYDH3_k127_12157772_0 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 363.0
BYDH3_k127_12157772_1 Sel1 domain protein repeat-containing protein K07126 - - 0.000000000000000000000000000000000000000000003357 176.0
BYDH3_k127_12157772_2 - - - - 0.000000000000000000000000000000000002622 148.0
BYDH3_k127_12157772_3 Memo-like protein K06990 - - 0.000000000000000000000000001202 122.0
BYDH3_k127_12205458_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 8.238e-307 961.0
BYDH3_k127_12205458_1 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000007895 247.0
BYDH3_k127_12205458_2 Formate dehydrogenase iron-sulfur subunit K00124 - - 0.0000000000000000000000000000001782 124.0
BYDH3_k127_12205458_3 metal cluster binding K06940 - - 0.00000000000000000000000000005333 117.0
BYDH3_k127_12205458_4 Necessary for formate dehydrogenase activity K02380 - - 0.00000000000000000000001605 109.0
BYDH3_k127_12313056_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261 - 1.4.1.2,1.4.1.3 1.587e-283 901.0
BYDH3_k127_12313056_1 PFAM Cys Met metabolism K01739 - 2.5.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007444 579.0
BYDH3_k127_12313056_10 Cell shape determining protein MreB Mrl K03569 - - 0.000000000000000000000000000000000000003613 147.0
BYDH3_k127_12313056_11 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000009305 155.0
BYDH3_k127_12313056_12 pyruvate phosphate dikinase - - - 0.00000000000000000000000000000000000005743 144.0
BYDH3_k127_12313056_13 cheY-homologous receiver domain - - - 0.00000000000000000000000006358 112.0
BYDH3_k127_12313056_2 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 492.0
BYDH3_k127_12313056_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 441.0
BYDH3_k127_12313056_4 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 427.0
BYDH3_k127_12313056_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 326.0
BYDH3_k127_12313056_6 AMMECR1 K06990 - - 0.000000000000000000000000000000000000000000000000000000000000003217 223.0
BYDH3_k127_12313056_7 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000456 228.0
BYDH3_k127_12313056_8 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000004762 199.0
BYDH3_k127_12313056_9 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000000000000000000000000000000000000000003066 162.0
BYDH3_k127_12437428_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 1.856e-276 863.0
BYDH3_k127_12437428_1 acyl-coa dehydrogenase K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005459 614.0
BYDH3_k127_12437428_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00172,K00441,K03522 - 1.12.98.1,1.2.7.1 0.00000000000000000000000000000000000000001206 157.0
BYDH3_k127_12437428_3 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0000000000000000000000000000000009994 132.0
BYDH3_k127_12437428_4 - - - - 0.000946 44.0
BYDH3_k127_12509374_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 604.0
BYDH3_k127_12509374_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 402.0
BYDH3_k127_12509374_10 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000006401 169.0
BYDH3_k127_12509374_11 Domain of unknown function (DUF4416) - - - 0.00000000000000000000000000000000000004216 152.0
BYDH3_k127_12509374_12 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000434 143.0
BYDH3_k127_12509374_13 Belongs to the UPF0296 family K09777 - - 0.000000000000000000000000000002939 122.0
BYDH3_k127_12509374_14 TIGRFAM flagellar biosynthetic protein FliS K02422 - - 0.0000000000000000000000002525 109.0
BYDH3_k127_12509374_15 PFAM 2-nitropropane dioxygenase NPD K02371 - 1.3.1.9 0.0000000000002491 70.0
BYDH3_k127_12509374_16 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.0003365 45.0
BYDH3_k127_12509374_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 329.0
BYDH3_k127_12509374_3 PFAM 2-nitropropane dioxygenase NPD K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 289.0
BYDH3_k127_12509374_4 Bifunctional protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001426 274.0
BYDH3_k127_12509374_5 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000009425 238.0
BYDH3_k127_12509374_6 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000003534 205.0
BYDH3_k127_12509374_7 PFAM YicC-like family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000001995 204.0
BYDH3_k127_12509374_8 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.0000000000000000000000000000000000000000000000000000002063 198.0
BYDH3_k127_12509374_9 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000003499 177.0
BYDH3_k127_12543235_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 2.834e-205 643.0
BYDH3_k127_12565111_0 NAD synthase - - - 4.956e-227 713.0
BYDH3_k127_12565111_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 5.663e-197 620.0
BYDH3_k127_12565111_10 NAD synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 334.0
BYDH3_k127_12565111_11 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 335.0
BYDH3_k127_12565111_12 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 330.0
BYDH3_k127_12565111_13 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004945 320.0
BYDH3_k127_12565111_14 PFAM transferase hexapeptide repeat containing protein K00661 - 2.3.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008107 307.0
BYDH3_k127_12565111_15 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001731 290.0
BYDH3_k127_12565111_16 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003942 266.0
BYDH3_k127_12565111_17 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000006635 257.0
BYDH3_k127_12565111_18 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000004317 244.0
BYDH3_k127_12565111_19 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000004025 233.0
BYDH3_k127_12565111_2 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009724 606.0
BYDH3_k127_12565111_20 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000003713 222.0
BYDH3_k127_12565111_21 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000006225 213.0
BYDH3_k127_12565111_22 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000007739 211.0
BYDH3_k127_12565111_23 Lumazine binding domain K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000001757 201.0
BYDH3_k127_12565111_24 PALM domain HD hydrolase domain and K09749 - - 0.000000000000000000000000000000000000000000000000002268 200.0
BYDH3_k127_12565111_25 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000009031 184.0
BYDH3_k127_12565111_26 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000121 191.0
BYDH3_k127_12565111_27 ribose 5-phosphate isomerase B K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000001644 176.0
BYDH3_k127_12565111_28 Type II secretion system (T2SS), protein G K02456 - - 0.00000000000000000000000000000000000000000000003298 173.0
BYDH3_k127_12565111_29 PFAM Thiamin pyrophosphokinase, catalytic region K00949 - 2.7.6.2 0.000000000000000000000000000000000000000287 157.0
BYDH3_k127_12565111_3 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 593.0
BYDH3_k127_12565111_30 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - 0.0000000000000000000000000000000000000004674 152.0
BYDH3_k127_12565111_31 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000006833 158.0
BYDH3_k127_12565111_32 Phosphoribosyl transferase domain K07101 - - 0.000000000000000000000000000000000001214 148.0
BYDH3_k127_12565111_33 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 - 3.1.3.5 0.000000000000000000000000000000000004781 149.0
BYDH3_k127_12565111_34 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000001172 131.0
BYDH3_k127_12565111_35 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000414 132.0
BYDH3_k127_12565111_36 Type II secretion system (T2SS), protein K K02460 - - 0.0000000000000000000000000000003322 136.0
BYDH3_k127_12565111_37 Fimbrial assembly family protein K02461 - - 0.0000000000000000000000000005753 129.0
BYDH3_k127_12565111_38 Peptidylprolyl isomerase K03769,K07533 - 5.2.1.8 0.000000000000000000000000002492 123.0
BYDH3_k127_12565111_39 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000009558 96.0
BYDH3_k127_12565111_4 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 505.0
BYDH3_k127_12565111_40 Ribosomal L32p protein family K02911 - - 0.00000000000000000008734 89.0
BYDH3_k127_12565111_41 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000002137 94.0
BYDH3_k127_12565111_42 major facilitator superfamily - - - 0.000000000000008271 87.0
BYDH3_k127_12565111_44 Type II secretion system (T2SS), protein M K02462 - - 0.000000000001683 76.0
BYDH3_k127_12565111_45 Prokaryotic N-terminal methylation motif K02459 - - 0.000000002612 66.0
BYDH3_k127_12565111_46 PFAM Pentapeptide repeats (8 copies) - - - 0.0000001458 63.0
BYDH3_k127_12565111_47 stress-induced mitochondrial fusion - - - 0.00001269 52.0
BYDH3_k127_12565111_48 bacterial-type flagellum assembly K02414 - - 0.00002263 57.0
BYDH3_k127_12565111_49 - - - - 0.00002618 56.0
BYDH3_k127_12565111_5 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 491.0
BYDH3_k127_12565111_50 Contains one ATP-binding region, ATPase-like domain (IPR003594) - - - 0.00003199 56.0
BYDH3_k127_12565111_51 Prokaryotic N-terminal methylation motif K08084 - - 0.00009197 52.0
BYDH3_k127_12565111_52 Type II secretion system (T2SS), protein I K02458 - - 0.0009133 46.0
BYDH3_k127_12565111_6 PFAM Glycoside hydrolase 15-related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 442.0
BYDH3_k127_12565111_7 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 441.0
BYDH3_k127_12565111_8 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 374.0
BYDH3_k127_12565111_9 General secretion pathway protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 355.0
BYDH3_k127_12567895_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009397 477.0
BYDH3_k127_12567895_1 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000334 245.0
BYDH3_k127_12567895_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000001066 143.0
BYDH3_k127_12579899_0 Belongs to the UPF0251 family - - - 0.000000000000000000000000000000000000000000008376 168.0
BYDH3_k127_12579899_1 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.000000000000000000000000000000000002271 143.0
BYDH3_k127_12579899_2 Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000000000000000000009379 137.0
BYDH3_k127_12579899_3 TIGRFAM C_GCAxxG_C_C family - - - 0.00000000000000000000000003693 111.0
BYDH3_k127_12593737_0 elongation factor Tu domain 2 protein K06207 - - 6.402e-240 749.0
BYDH3_k127_12593737_1 AcrB/AcrD/AcrF family K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 544.0
BYDH3_k127_12593737_2 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000005208 228.0
BYDH3_k127_12593737_3 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000005292 192.0
BYDH3_k127_12615014_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 418.0
BYDH3_k127_12615014_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 366.0
BYDH3_k127_12615014_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000006356 161.0
BYDH3_k127_12615014_3 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.0000000000000000000000003544 106.0
BYDH3_k127_12717618_0 PFAM molybdopterin oxidoreductase K00123,K05299 - 1.17.1.10,1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 506.0
BYDH3_k127_12717618_1 Major Facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 434.0
BYDH3_k127_12816184_0 Cytochrome c554 and c-prime - - - 2.565e-211 678.0
BYDH3_k127_12816184_1 Alpha amylase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 606.0
BYDH3_k127_128584_0 Saccharopine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 561.0
BYDH3_k127_128584_1 VWA domain containing CoxE-like protein K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 458.0
BYDH3_k127_128584_2 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 451.0
BYDH3_k127_128584_3 AAA ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 443.0
BYDH3_k127_128584_4 heat shock protein DnaJ domain protein K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007869 297.0
BYDH3_k127_128584_5 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000000000009694 216.0
BYDH3_k127_128584_6 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000001106 228.0
BYDH3_k127_128584_7 Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.000000000000000000000000000000000000000000000000000000001809 208.0
BYDH3_k127_128584_8 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000002386 185.0
BYDH3_k127_128584_9 photosystem II stabilization K02237 - - 0.0000000000001102 75.0
BYDH3_k127_12866944_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 420.0
BYDH3_k127_12866944_1 Pyridoxamine 5'-phosphate oxidase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 352.0
BYDH3_k127_12907857_0 Belongs to the RtcB family K14415 - 6.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000001543 232.0
BYDH3_k127_12907857_1 transport systems ATPase components K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000211 220.0
BYDH3_k127_12907857_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000003925 183.0
BYDH3_k127_12907857_3 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000002833 126.0
BYDH3_k127_12907857_4 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000002698 89.0
BYDH3_k127_12941816_0 Aminotransferase class-III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 464.0
BYDH3_k127_12941816_1 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000001067 174.0
BYDH3_k127_12941816_2 Hydrolase, NUDIX family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000001327 162.0
BYDH3_k127_12941816_3 - - - - 0.0000000000000000000000004396 118.0
BYDH3_k127_12941816_4 HEPN domain - - - 0.0000000000000000000000371 104.0
BYDH3_k127_12941816_6 CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette K15342 - - 0.00008235 46.0
BYDH3_k127_13060949_0 Molecular chaperone. Has ATPase activity K04079 - - 6.078e-267 836.0
BYDH3_k127_13060949_1 Belongs to the IlvD Edd family K01687,K22396 - 4.2.1.82,4.2.1.9 0.0000000000000000000000000000000005034 133.0
BYDH3_k127_130641_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 3.903e-301 937.0
BYDH3_k127_130641_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 304.0
BYDH3_k127_130641_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000005433 194.0
BYDH3_k127_130641_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000001487 149.0
BYDH3_k127_130641_4 PFAM Glycoside hydrolase, family 13 - - - 0.0000000000000000000000000000000000266 136.0
BYDH3_k127_130641_5 Iron-containing alcohol dehydrogenase K00001,K01714,K13954 - 1.1.1.1,4.3.3.7 0.0000000000000000000000000000000006646 133.0
BYDH3_k127_130641_6 SlyX K03745 - - 0.0001233 46.0
BYDH3_k127_13091051_0 4Fe-4S double cluster binding domain K00265 - 1.4.1.13,1.4.1.14 1.498e-297 932.0
BYDH3_k127_13091051_1 glutamate synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 473.0
BYDH3_k127_13091051_2 GXGXG motif - - - 0.00000000000000000000000000000000000000000000000000000000002406 209.0
BYDH3_k127_13091051_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. K02584 - - 0.00000000000000000000000000000000001737 136.0
BYDH3_k127_1315670_0 Thioesterase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 299.0
BYDH3_k127_1315670_1 Acyl-CoA dehydrogenase type 2 domain - - - 0.000003517 51.0
BYDH3_k127_1329802_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 2.759e-229 721.0
BYDH3_k127_1329802_1 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 614.0
BYDH3_k127_1329802_2 bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 571.0
BYDH3_k127_1329802_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 544.0
BYDH3_k127_1329802_4 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 476.0
BYDH3_k127_1329802_5 PFAM SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 366.0
BYDH3_k127_1329802_6 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000004591 223.0
BYDH3_k127_1329802_7 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000001095 193.0
BYDH3_k127_1329802_8 NUDIX domain - - - 0.000000000000000000000000000000001096 139.0
BYDH3_k127_1329802_9 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate K07566 - 2.7.7.87 0.00000000000000000000000253 108.0
BYDH3_k127_1329930_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 2.767e-207 650.0
BYDH3_k127_1329930_1 PFAM aminoglycoside phosphotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000759 494.0
BYDH3_k127_1329930_10 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000000000000008863 181.0
BYDH3_k127_1329930_11 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000000000000000000000000000000000002436 180.0
BYDH3_k127_1329930_12 AhpC/TSA family - - - 0.0000000000000000000000000000000003237 138.0
BYDH3_k127_1329930_13 PFAM Rubrerythrin - - - 0.000000000000000000000000000001849 120.0
BYDH3_k127_1329930_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 481.0
BYDH3_k127_1329930_3 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 334.0
BYDH3_k127_1329930_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000519 262.0
BYDH3_k127_1329930_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005291 260.0
BYDH3_k127_1329930_6 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002258 253.0
BYDH3_k127_1329930_7 electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000538 242.0
BYDH3_k127_1329930_8 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000000000002891 207.0
BYDH3_k127_1329930_9 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000002683 196.0
BYDH3_k127_1449531_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 517.0
BYDH3_k127_1449531_1 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 479.0
BYDH3_k127_1449531_10 Bacterial regulatory proteins, tetR family - - - 0.000000000000007718 83.0
BYDH3_k127_1449531_11 Dodecin K09165 - - 0.0000000000000184 76.0
BYDH3_k127_1449531_12 Caspase domain - - - 0.0002275 51.0
BYDH3_k127_1449531_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 452.0
BYDH3_k127_1449531_3 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 336.0
BYDH3_k127_1449531_4 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004515 319.0
BYDH3_k127_1449531_5 Anion-transporting ATPase K07321 - - 0.0000000000000000000000000000000000000000000000000000000000000000004658 237.0
BYDH3_k127_1449531_6 PFAM CoA-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001227 234.0
BYDH3_k127_1449531_7 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000003516 220.0
BYDH3_k127_1449531_8 - - - - 0.0000000000000000000000000000000000000000002951 175.0
BYDH3_k127_1449531_9 Dodecin K09165 - - 0.00000000000000000000001158 102.0
BYDH3_k127_1534708_0 biotin carboxylase activity K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 443.0
BYDH3_k127_1534708_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008379 360.0
BYDH3_k127_1534708_2 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000513 267.0
BYDH3_k127_1534708_3 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000003644 215.0
BYDH3_k127_1534708_4 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000006602 155.0
BYDH3_k127_1534708_5 Transglycosylase SLT domain K08305 - - 0.000000000000000000000000000000000000007169 161.0
BYDH3_k127_1534708_6 FtsJ-like methyltransferase K06442 GO:0000154,GO:0001510,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019835,GO:0019836,GO:0022613,GO:0031167,GO:0031640,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035821,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044003,GO:0044004,GO:0044085,GO:0044179,GO:0044237,GO:0044238,GO:0044260,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046483,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.226,2.1.1.227 0.00000004533 55.0
BYDH3_k127_1541501_0 PFAM Radical SAM domain protein K22226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006584 522.0
BYDH3_k127_1541501_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000001497 245.0
BYDH3_k127_1560112_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K07306 - 1.8.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006853 458.0
BYDH3_k127_1560112_1 Fe-S center protein K07138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 454.0
BYDH3_k127_1560112_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000000000000000000008006 219.0
BYDH3_k127_1560112_3 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000001651 194.0
BYDH3_k127_1560112_4 Cysteine dioxygenase type I - - - 0.00000000000000000000000000000000000000002147 160.0
BYDH3_k127_1560112_5 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000006262 66.0
BYDH3_k127_1589355_0 Glutamine amidotransferase domain K00764 - 2.4.2.14 1.835e-217 682.0
BYDH3_k127_1589355_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 1.265e-196 625.0
BYDH3_k127_1589355_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000001771 240.0
BYDH3_k127_1702282_0 Hydroxymethylglutaryl-coenzyme A reductase K00021 - 1.1.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005248 573.0
BYDH3_k127_1702282_1 Uncharacterised conserved protein (DUF2156) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 355.0
BYDH3_k127_1702282_2 Methylase involved in ubiquinone menaquinone biosynthesis K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000002919 239.0
BYDH3_k127_1702282_3 Peptidase family C69 - - - 0.00000000000000000000000000000000000000000000000000000003245 210.0
BYDH3_k127_1702282_4 haloacid dehalogenase-like hydrolase K00655,K15781 - 2.3.1.51,3.1.3.3 0.00000000000000000000000000000009443 133.0
BYDH3_k127_1702282_5 Flavin containing amine oxidoreductase K09516,K09835 - 1.3.99.23,5.2.1.13 0.000000000000008656 84.0
BYDH3_k127_1726517_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 441.0
BYDH3_k127_1726517_1 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002475 345.0
BYDH3_k127_1726517_2 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005792 267.0
BYDH3_k127_1727681_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 309.0
BYDH3_k127_1727681_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000003059 213.0
BYDH3_k127_1727681_2 Alpha/beta hydrolase family K06889,K07397 - - 0.00000000000000000000000000000000000000000000000000003694 197.0
BYDH3_k127_1727681_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000001561 193.0
BYDH3_k127_1727681_4 TIGRFAM siroheme synthase K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000002117 166.0
BYDH3_k127_1727681_5 Cytochrome C assembly protein - - - 0.0000000000000000000008911 107.0
BYDH3_k127_1727681_7 chlorophyll binding K16191,K20276 - - 0.000000001047 66.0
BYDH3_k127_1727681_8 Protein of unknown function (DUF1573) - - - 0.000007628 50.0
BYDH3_k127_1745137_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0046983,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 526.0
BYDH3_k127_1745137_1 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000003349 198.0
BYDH3_k127_1745137_2 PHP-associated K07053 - 3.1.3.97 0.000000000000000000000000000000000001592 143.0
BYDH3_k127_1806362_0 PFAM Phosphoglycerate mutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 460.0
BYDH3_k127_1806362_1 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000001064 227.0
BYDH3_k127_1806362_2 - - - - 0.000009793 48.0
BYDH3_k127_1930941_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 336.0
BYDH3_k127_1930941_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000001974 205.0
BYDH3_k127_1930941_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000003409 207.0
BYDH3_k127_1930941_3 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000004775 157.0
BYDH3_k127_1930941_4 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000001662 78.0
BYDH3_k127_1930941_5 Elongation factor Tu GTP binding domain K02358 - - 0.000000000006002 65.0
BYDH3_k127_1930941_6 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000004992 58.0
BYDH3_k127_1930941_7 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000546 48.0
BYDH3_k127_2093286_0 TGS domain K06944 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 400.0
BYDH3_k127_2093286_1 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000105 280.0
BYDH3_k127_2093286_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000004803 196.0
BYDH3_k127_2114057_0 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 520.0
BYDH3_k127_2114057_1 Bacterial type II and III secretion system protein K12282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 330.0
BYDH3_k127_2114057_2 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000001021 249.0
BYDH3_k127_2114057_3 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000000000000000000761 147.0
BYDH3_k127_2114057_4 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.0000000000000000000000000353 115.0
BYDH3_k127_2114057_5 general secretion pathway protein - - - 0.00000000000005131 80.0
BYDH3_k127_2284505_0 NADPH-dependent FMN reductase K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 301.0
BYDH3_k127_2284505_1 Electron transfer flavoprotein, alpha subunit K03522,K22432 - 1.3.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009526 293.0
BYDH3_k127_2284505_2 PFAM SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009293 249.0
BYDH3_k127_2284505_3 TIGRFAM DNA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000002165 214.0
BYDH3_k127_2326859_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 396.0
BYDH3_k127_2326859_1 Ribonuclease R winged-helix domain K09720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 334.0
BYDH3_k127_2326859_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000226 247.0
BYDH3_k127_2326859_3 Hydrolases of the alpha beta superfamily K06889 - - 0.00000000000000000000000000000002233 137.0
BYDH3_k127_2326859_4 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.000000000000000000000000005588 113.0
BYDH3_k127_2359323_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004912 456.0
BYDH3_k127_2359323_1 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009687 452.0
BYDH3_k127_2359323_10 PFAM Preprotein translocase SecG subunit K03075 - - 0.0000000000000000005342 90.0
BYDH3_k127_2359323_11 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 - 1.2.7.3 0.00000000000000000118 87.0
BYDH3_k127_2359323_12 adhesin AidA-related - - - 0.00000001316 67.0
BYDH3_k127_2359323_13 5-oxoprolinase (ATP-hydrolyzing) activity - - - 0.00003369 54.0
BYDH3_k127_2359323_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 353.0
BYDH3_k127_2359323_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 305.0
BYDH3_k127_2359323_4 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000001724 183.0
BYDH3_k127_2359323_5 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000000000000000000003097 163.0
BYDH3_k127_2359323_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000149 137.0
BYDH3_k127_2359323_7 ACT domain - - - 0.00000000000000000000000000000004322 129.0
BYDH3_k127_2359323_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000007505 125.0
BYDH3_k127_2359323_9 Peptidoglycan-synthase activator LpoB - - - 0.0000000000000000000001154 109.0
BYDH3_k127_2504835_0 PFAM Acyl-CoA dehydrogenase N terminal K00248 - 1.3.8.1 3.185e-234 739.0
BYDH3_k127_2504835_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000002419 62.0
BYDH3_k127_2514366_0 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 512.0
BYDH3_k127_2514366_1 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 339.0
BYDH3_k127_2514366_2 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 298.0
BYDH3_k127_2514366_3 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000001925 190.0
BYDH3_k127_2514366_4 PFAM Cyclic nucleotide-binding - - - 0.0000000000000000000000000000000000000000003713 168.0
BYDH3_k127_2514366_5 HemY protein - - - 0.00000000000000000000000000000000000000005635 161.0
BYDH3_k127_2514366_6 Member of the two-component regulatory system AtoS AtoC. In the presence of acetoacetate, AtoS AtoC stimulates the expression of the atoDAEB operon, leading to short chain fatty acid catabolism and activation of the poly-(R)-3-hydroxybutyrate (cPHB) biosynthetic pathway. Also induces the operon in response to spermidine. Involved in the regulation of motility and chemotaxis, via transcriptional induction of the flagellar regulon. AtoS is a membrane-associated kinase that phosphorylates and activates AtoC in response to environmental signals K07710 GO:0000155,GO:0000160,GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0017076,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 2.7.13.3 0.00000000000000000002275 105.0
BYDH3_k127_2514366_7 Zinc dependent phospholipase C - - - 0.0000000000002023 81.0
BYDH3_k127_2514366_8 PFAM Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.0004873 46.0
BYDH3_k127_2528437_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 301.0
BYDH3_k127_2528437_1 dihydromethanopterin reductase activity - - - 0.00000000000000000000006779 100.0
BYDH3_k127_2528437_2 GDSL-like Lipase/Acylhydrolase - - - 0.000001487 57.0
BYDH3_k127_258485_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004318 263.0
BYDH3_k127_258485_1 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000003143 229.0
BYDH3_k127_258485_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000001736 165.0
BYDH3_k127_258485_3 GMC oxidoreductase - - - 0.000000005384 58.0
BYDH3_k127_2631579_0 acyl-coa dehydrogenase K08297 GO:0003674,GO:0003824,GO:0006066,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0016627,GO:0034308,GO:0034309,GO:0044281,GO:0044283,GO:0046165,GO:0052890,GO:0055114,GO:0071270,GO:0071271,GO:0071704,GO:1901576,GO:1901615,GO:1901617 1.3.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005693 560.0
BYDH3_k127_2631579_1 PFAM AMP-dependent synthetase and ligase K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000008676 129.0
BYDH3_k127_2631579_2 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000003237 57.0
BYDH3_k127_2641708_0 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 561.0
BYDH3_k127_2641708_1 TOBE domain K11072 - 3.6.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 539.0
BYDH3_k127_2641708_10 - - - - 0.000000000000000000000001322 105.0
BYDH3_k127_2641708_11 PFAM Cysteine-rich domain - - - 0.000000008282 57.0
BYDH3_k127_2641708_2 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 471.0
BYDH3_k127_2641708_3 Binding-protein-dependent transport system inner membrane component K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 444.0
BYDH3_k127_2641708_4 Binding-protein-dependent transport system inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 437.0
BYDH3_k127_2641708_5 alcohol dehydrogenase K00043 - 1.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007591 359.0
BYDH3_k127_2641708_6 GMP synthase (glutamine-hydrolyzing) activity K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 315.0
BYDH3_k127_2641708_7 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 295.0
BYDH3_k127_2641708_8 phosphoserine phosphatase SerB K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000003565 199.0
BYDH3_k127_2641708_9 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.0000000000000000000000000002004 122.0
BYDH3_k127_2646035_0 PFAM formate C-acetyltransferase glycine radical K00656,K07540 - 2.3.1.54,4.1.99.11 0.0 1185.0
BYDH3_k127_2646035_1 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 452.0
BYDH3_k127_2646035_2 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 282.0
BYDH3_k127_2646035_3 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004039 264.0
BYDH3_k127_2693134_0 ABC transporter K03701 - - 0.0 1177.0
BYDH3_k127_2693134_1 TRCF K03723 - - 3.806e-240 782.0
BYDH3_k127_2693134_10 KH domain K06960 - - 0.000000000000000000000000004955 111.0
BYDH3_k127_2693134_11 - - - - 0.000000000000000000000007612 105.0
BYDH3_k127_2693134_12 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000001837 104.0
BYDH3_k127_2693134_13 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000005437 95.0
BYDH3_k127_2693134_14 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.00000001561 65.0
BYDH3_k127_2693134_2 transport system, periplasmic component K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 323.0
BYDH3_k127_2693134_3 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004972 272.0
BYDH3_k127_2693134_4 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000001288 258.0
BYDH3_k127_2693134_5 Metal-dependent phosphohydrolase - - - 0.0000000000000000000000000000000000000000000000000004943 199.0
BYDH3_k127_2693134_6 metallophosphoesterase K07096 - - 0.00000000000000000000000000000000000000000001123 175.0
BYDH3_k127_2693134_7 SAM-dependent RNA methyltransferase - - - 0.0000000000000000000000000000000000000000002371 169.0
BYDH3_k127_2693134_8 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075,K15780 - 2.4.2.8,6.3.4.19 0.0000000000000000000000000000000000000007052 164.0
BYDH3_k127_2693134_9 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000006963 139.0
BYDH3_k127_2758038_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001524 259.0
BYDH3_k127_2758038_1 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000003732 218.0
BYDH3_k127_2758038_10 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000009534 104.0
BYDH3_k127_2758038_11 COG1841 Ribosomal protein L30 L7E K02907 - - 0.000000000001458 71.0
BYDH3_k127_2758038_12 Binds to the 23S rRNA K02876 - - 0.000004436 49.0
BYDH3_k127_2758038_13 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00002938 53.0
BYDH3_k127_2758038_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000009749 194.0
BYDH3_k127_2758038_3 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000001671 196.0
BYDH3_k127_2758038_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000417 192.0
BYDH3_k127_2758038_5 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000003392 171.0
BYDH3_k127_2758038_6 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000004915 167.0
BYDH3_k127_2758038_7 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000006678 151.0
BYDH3_k127_2758038_8 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000000000000000001971 132.0
BYDH3_k127_2758038_9 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000002071 108.0
BYDH3_k127_2767709_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009981 420.0
BYDH3_k127_2767709_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 372.0
BYDH3_k127_2767709_10 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000006828 125.0
BYDH3_k127_2767709_11 Diguanylate cyclase - - - 0.000000000000000000000000345 122.0
BYDH3_k127_2767709_12 Domain of unknown function (DUF4388) - - - 0.00000000000000000001362 105.0
BYDH3_k127_2767709_13 Tetratricopeptide repeats - - - 0.00000000000005315 83.0
BYDH3_k127_2767709_14 - - - - 0.00000000000007417 77.0
BYDH3_k127_2767709_15 Tetratricopeptide repeats - - - 0.00000000007613 73.0
BYDH3_k127_2767709_16 peptidyl-tyrosine sulfation - - - 0.00008374 55.0
BYDH3_k127_2767709_2 NfeD-like C-terminal, partner-binding K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 374.0
BYDH3_k127_2767709_3 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006434 364.0
BYDH3_k127_2767709_4 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004627 261.0
BYDH3_k127_2767709_5 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000311 252.0
BYDH3_k127_2767709_6 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000001423 243.0
BYDH3_k127_2767709_7 tRNA methyl transferase K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000002799 241.0
BYDH3_k127_2767709_8 PFAM beta-lactamase domain protein - GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615 - 0.0000000000000000000000000000000000000000000000000000000007236 209.0
BYDH3_k127_2767709_9 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000002686 147.0
BYDH3_k127_2773848_0 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 341.0
BYDH3_k127_2773848_1 Methylase involved in ubiquinone menaquinone biosynthesis K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000001061 194.0
BYDH3_k127_2855719_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 1.266e-210 661.0
BYDH3_k127_2855719_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 622.0
BYDH3_k127_2855719_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 369.0
BYDH3_k127_2855719_3 PFAM Cytochrome c assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 293.0
BYDH3_k127_2855719_4 PFAM Phosphate-selective porin O K07221 - - 0.0000000000000000000000000000000000000000000000000000000000000000001601 246.0
BYDH3_k127_2855719_5 PFAM ResB family protein K07399 - - 0.00000000000000000000000000000000000000000000000000000000003143 222.0
BYDH3_k127_2855719_6 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000000000000002645 211.0
BYDH3_k127_2865189_0 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 368.0
BYDH3_k127_2865189_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 316.0
BYDH3_k127_2865189_2 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 325.0
BYDH3_k127_2865189_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000684 224.0
BYDH3_k127_2865189_4 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000859 191.0
BYDH3_k127_2865189_5 Pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.0000002007 55.0
BYDH3_k127_2877501_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 402.0
BYDH3_k127_2884831_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 9.634e-280 877.0
BYDH3_k127_2884831_1 Peptidyl-tRNA hydrolase K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.000000000000000000000000000000000000000000000002402 180.0
BYDH3_k127_2891759_0 PFAM Peptidase M29, aminopeptidase II K19689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 523.0
BYDH3_k127_2891759_1 Isocitrate/isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 432.0
BYDH3_k127_2891759_10 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000004366 122.0
BYDH3_k127_2891759_11 GGDEF domain - - - 0.0000000000000000000001415 106.0
BYDH3_k127_2891759_12 Belongs to the SOS response-associated peptidase family - - - 0.0000000000000000002645 97.0
BYDH3_k127_2891759_2 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 360.0
BYDH3_k127_2891759_3 alpha/beta hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 338.0
BYDH3_k127_2891759_4 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 289.0
BYDH3_k127_2891759_5 diguanylate cyclase - - - 0.000000000000000000000000000000000000000005052 163.0
BYDH3_k127_2891759_6 Amidohydrolase family K06015 - 3.5.1.81 0.00000000000000000000000000000000000000002114 162.0
BYDH3_k127_2891759_7 Universal stress protein family - - - 0.000000000000000000000000000000000000001036 157.0
BYDH3_k127_2891759_8 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 - 5.2.1.8 0.000000000000000000000000000000000000002412 151.0
BYDH3_k127_2891759_9 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000004231 128.0
BYDH3_k127_2946263_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009104 437.0
BYDH3_k127_2946263_1 response regulator K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 434.0
BYDH3_k127_2946263_2 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 288.0
BYDH3_k127_2946263_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004809 263.0
BYDH3_k127_2946263_4 histidine kinase HAMP region domain protein - - - 0.00000000000000000000000000000000000000000000000000000000003346 222.0
BYDH3_k127_2946263_5 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000004732 159.0
BYDH3_k127_2946263_6 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000000000001068 152.0
BYDH3_k127_2946263_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000007901 132.0
BYDH3_k127_2946263_8 OstA-like protein K09774 - - 0.000000000000002267 82.0
BYDH3_k127_2946263_9 Lipopolysaccharide-assembly, LptC-related - - - 0.0000007681 58.0
BYDH3_k127_2971724_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 6.624e-278 872.0
BYDH3_k127_2971724_1 oxidoreductase activity - - - 2.676e-242 769.0
BYDH3_k127_2971724_10 Male sterility protein K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000000000001264 274.0
BYDH3_k127_2971724_11 PFAM alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008164 273.0
BYDH3_k127_2971724_12 PFAM Iron-containing alcohol dehydrogenase K00001,K19954 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000004203 282.0
BYDH3_k127_2971724_13 PFAM Enoyl-CoA hydratase isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003481 259.0
BYDH3_k127_2971724_14 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002166 256.0
BYDH3_k127_2971724_15 Putative regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002515 236.0
BYDH3_k127_2971724_16 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000003832 227.0
BYDH3_k127_2971724_17 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000005523 213.0
BYDH3_k127_2971724_18 WbqC-like protein family - - - 0.000000000000000000000000000000000000000000000000000000003526 207.0
BYDH3_k127_2971724_19 FMN-dependent dehydrogenase K02371 - 1.3.1.9 0.0000000000000000000000000000000000938 138.0
BYDH3_k127_2971724_2 Adenine deaminase C-terminal domain K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 591.0
BYDH3_k127_2971724_20 PFAM regulatory protein MerR - - - 0.0000000000000000004298 100.0
BYDH3_k127_2971724_21 4Fe-4S single cluster domain of Ferredoxin I - - - 0.00000000000000008691 83.0
BYDH3_k127_2971724_22 - - - - 0.00000000002939 65.0
BYDH3_k127_2971724_23 - - - - 0.00000000009759 68.0
BYDH3_k127_2971724_24 Hydrolase, alpha beta domain protein - - - 0.00002065 57.0
BYDH3_k127_2971724_3 pfam abc-1 K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 578.0
BYDH3_k127_2971724_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 542.0
BYDH3_k127_2971724_5 23S rRNA (guanine(2445)-N(2))-methyltransferase activity K07444,K12297 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.264 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 493.0
BYDH3_k127_2971724_6 Belongs to the DEAD box helicase family K03732 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 459.0
BYDH3_k127_2971724_7 Protein of unknown function (DUF1298) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 404.0
BYDH3_k127_2971724_8 Fatty acid desaturase K00496 - 1.14.15.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 311.0
BYDH3_k127_2971724_9 EcsC protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002135 278.0
BYDH3_k127_3010804_0 PFAM aminotransferase class V K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 556.0
BYDH3_k127_3010804_1 PFAM transferase hexapeptide repeat containing protein K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000369 402.0
BYDH3_k127_3010804_2 BFD domain protein 2Fe-2S -binding domain protein K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491 304.0
BYDH3_k127_3010804_3 TraB family K09973 - - 0.000000000000000000000000000000000000000000000003175 184.0
BYDH3_k127_3010804_4 Pfam:UPF0118 - - - 0.00000000000000000000000007792 107.0
BYDH3_k127_3034640_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 2.62e-223 712.0
BYDH3_k127_3034640_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 1.592e-219 696.0
BYDH3_k127_3034640_2 HD domain K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 480.0
BYDH3_k127_3034640_3 hydrolases of the HAD superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 296.0
BYDH3_k127_3034640_4 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006595 249.0
BYDH3_k127_3034640_5 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000006954 177.0
BYDH3_k127_3060927_0 AIR synthase related protein domain protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 432.0
BYDH3_k127_3060927_1 Protein of unknown function (DUF401) K09133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004597 363.0
BYDH3_k127_3060927_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000006713 263.0
BYDH3_k127_3060927_3 Protein of unknown function (DUF523) - - - 0.0000000000000000000000000000000009289 137.0
BYDH3_k127_3060927_4 Type II transport protein GspH K08084 - - 0.0001459 51.0
BYDH3_k127_31450_0 Surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 401.0
BYDH3_k127_31450_1 Transposase - - - 0.000000000000000004483 87.0
BYDH3_k127_31450_2 Protein of unknown function (DUF3313) - - - 0.00000004088 55.0
BYDH3_k127_3145042_0 PFAM V-type ATPase 116 kDa K02123 - - 1.028e-229 734.0
BYDH3_k127_3145042_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 2.171e-201 631.0
BYDH3_k127_3145042_10 hydroxymethylglutaryl-CoA reductase K00021 - 1.1.1.34 0.00002073 48.0
BYDH3_k127_3145042_2 subunit (C K02119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 298.0
BYDH3_k127_3145042_3 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042802,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005646 258.0
BYDH3_k127_3145042_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001501 225.0
BYDH3_k127_3145042_5 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000000005001 209.0
BYDH3_k127_3145042_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.000000000000000000000000000000000000000000000002872 179.0
BYDH3_k127_3145042_7 Transcriptional regulator - - - 0.00000000000000000000000000000000000000001358 155.0
BYDH3_k127_3145042_8 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.0000000008236 63.0
BYDH3_k127_3145042_9 PFAM SpoVT AbrB - - - 0.000006792 48.0
BYDH3_k127_3152305_0 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 321.0
BYDH3_k127_3152305_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000000000000000000000000006539 194.0
BYDH3_k127_3152305_2 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.0000000000000000000000000000000000000008103 167.0
BYDH3_k127_3152305_3 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000001803 103.0
BYDH3_k127_3152305_4 PTS system sorbose-specific iic component K02795,K19508 - - 0.0000000001426 70.0
BYDH3_k127_3181159_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000001032 199.0
BYDH3_k127_3181159_1 PFAM aminotransferase class I and II K11358 - 2.6.1.1 0.00000000000000000000000000000001309 131.0
BYDH3_k127_3185161_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 1.685e-200 633.0
BYDH3_k127_3185161_1 TIGRFAM cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 454.0
BYDH3_k127_3185161_2 acetyl coenzyme A synthetase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000198 250.0
BYDH3_k127_3185161_3 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000223 151.0
BYDH3_k127_3185161_4 PFAM CoA-binding domain protein - - - 0.00000008658 59.0
BYDH3_k127_3222454_0 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000907 583.0
BYDH3_k127_3222454_1 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 375.0
BYDH3_k127_3222454_2 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 372.0
BYDH3_k127_3222454_3 Acyl-CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 367.0
BYDH3_k127_3222454_4 Enoyl-(Acyl carrier protein) reductase K15734 - 1.1.1.105 0.0000000000000000000000000000000000000000000000000000000000002473 221.0
BYDH3_k127_3222454_5 - - - - 0.000000000000000000000000000000000000000000000000629 184.0
BYDH3_k127_3222454_6 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000005158 152.0
BYDH3_k127_3222454_7 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000113 116.0
BYDH3_k127_3222454_8 Bacterial regulatory proteins, tetR family - - - 0.00000000007954 71.0
BYDH3_k127_3222454_9 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000003198 69.0
BYDH3_k127_3259571_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 506.0
BYDH3_k127_3259571_1 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 475.0
BYDH3_k127_3259571_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006969 451.0
BYDH3_k127_3259571_3 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005556 372.0
BYDH3_k127_3259571_4 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000001487 211.0
BYDH3_k127_3259571_5 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000000000000000003884 139.0
BYDH3_k127_3259571_6 PFAM tRNA synthetase class II (D K and N), nucleic acid binding OB-fold tRNA helicase-type K01893 - 6.1.1.22 0.00000000000000000000002217 104.0
BYDH3_k127_3259571_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000003389 106.0
BYDH3_k127_3259571_8 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.000000000000001062 82.0
BYDH3_k127_3259571_9 Modulates RecA activity K03565 - - 0.0000000001896 66.0
BYDH3_k127_337454_0 Sugar (and other) transporter K03446 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006262 606.0
BYDH3_k127_337454_1 PFAM secretion protein HlyD family protein K03543 - - 0.0000000000000000000000000000000000127 136.0
BYDH3_k127_337454_2 PFAM regulatory protein ArsR K03892 - - 0.000000000000000008232 87.0
BYDH3_k127_337454_3 redox-active disulfide protein 2 - - - 0.00000001108 57.0
BYDH3_k127_3376319_0 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 439.0
BYDH3_k127_3376319_1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 394.0
BYDH3_k127_3376319_10 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000002076 58.0
BYDH3_k127_3376319_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004265 392.0
BYDH3_k127_3376319_3 DNA polymerase K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004006 383.0
BYDH3_k127_3376319_4 SMART Elongator protein 3 MiaB NifB K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006323 282.0
BYDH3_k127_3376319_5 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005015 282.0
BYDH3_k127_3376319_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000003656 222.0
BYDH3_k127_3376319_7 ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16787 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015238,GO:0015711,GO:0015893,GO:0016020,GO:0022857,GO:0032217,GO:0032218,GO:0034220,GO:0035461,GO:0042221,GO:0042493,GO:0044464,GO:0050896,GO:0051179,GO:0051180,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0090482,GO:0098656 - 0.0000000000000000000000000000000000000000000000000287 190.0
BYDH3_k127_3376319_8 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000004173 181.0
BYDH3_k127_3376319_9 tRNA binding K01886,K05533,K15437 GO:0000049,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004819,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0030234,GO:0032266,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035091,GO:0035770,GO:0036464,GO:0043038,GO:0043039,GO:0043043,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0051340,GO:0051351,GO:0065007,GO:0065009,GO:0071704,GO:0080025,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901981,GO:1902936,GO:1990904 6.1.1.18 0.0000000000000000000000000000000000000000003506 167.0
BYDH3_k127_3393509_0 nitrogen compound transport K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008184 514.0
BYDH3_k127_3393509_1 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 434.0
BYDH3_k127_3393509_2 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 424.0
BYDH3_k127_3393509_3 dipeptide transport K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 348.0
BYDH3_k127_3393509_4 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000002575 226.0
BYDH3_k127_3444522_0 PFAM Pyridoxal-dependent decarboxylase K01580 - 4.1.1.15 1.327e-254 796.0
BYDH3_k127_3444522_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 4.535e-210 672.0
BYDH3_k127_3444522_10 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000424 286.0
BYDH3_k127_3444522_11 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003161 279.0
BYDH3_k127_3444522_12 Protein of unknown function (DUF554) K07150 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004484 252.0
BYDH3_k127_3444522_13 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000169 230.0
BYDH3_k127_3444522_14 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000007107 224.0
BYDH3_k127_3444522_15 PFAM flavin reductase domain protein, FMN-binding - - - 0.0000000000000000000000000000000000000000000000000000001964 201.0
BYDH3_k127_3444522_16 Hit family K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000000000004037 191.0
BYDH3_k127_3444522_17 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000756 191.0
BYDH3_k127_3444522_18 HDOD domain - - - 0.00000000000000000000000000000000000000001691 164.0
BYDH3_k127_3444522_19 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000000000000000000000001626 152.0
BYDH3_k127_3444522_2 acetyl-CoA hydrolase transferase - - - 8.477e-197 629.0
BYDH3_k127_3444522_20 Putative zinc- or iron-chelating domain K06940 - - 0.0000000000000000000000000000008387 129.0
BYDH3_k127_3444522_21 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - GO:0003674,GO:0003824,GO:0005488,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114 - 0.00000000000000000000000006747 108.0
BYDH3_k127_3444522_22 PFAM Metal-dependent hydrolase HDOD - - - 0.000000000000000000001558 107.0
BYDH3_k127_3444522_23 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000007143 92.0
BYDH3_k127_3444522_24 General secretion pathway protein C K02452 - - 0.00000000000000001838 93.0
BYDH3_k127_3444522_25 tetratricopeptide repeat - - - 0.00000000005091 72.0
BYDH3_k127_3444522_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 582.0
BYDH3_k127_3444522_4 type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 561.0
BYDH3_k127_3444522_5 amino acid-binding ACT domain protein K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 481.0
BYDH3_k127_3444522_6 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003496 444.0
BYDH3_k127_3444522_7 type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007266 455.0
BYDH3_k127_3444522_8 Proposed homoserine kinase K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 441.0
BYDH3_k127_3444522_9 PFAM Peptidoglycan-binding domain 1 protein K02450 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006598 300.0
BYDH3_k127_3450711_0 Domain of unknown function (DUF3390) K18929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008363 496.0
BYDH3_k127_3450711_1 Iron hydrogenase small subunit K00336,K18332 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000001525 197.0
BYDH3_k127_3450711_2 Pfam:DUF162 K00782 - - 0.000000000000000000000000000000000000000000000000005347 188.0
BYDH3_k127_3450711_3 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K18330,K22340 - 1.12.1.3,1.17.1.11,1.6.5.3 0.0000000000000000000000005642 118.0
BYDH3_k127_3450711_4 Respiratory-chain NADH dehydrogenase 51 Kd subunit K00335,K18331 - 1.12.1.3,1.6.5.3 0.0008703 43.0
BYDH3_k127_348886_0 PFAM ABC transporter related K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006026 287.0
BYDH3_k127_348886_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000111 223.0
BYDH3_k127_348886_2 AMP binding - - - 0.00000000000000000000000000000002563 130.0
BYDH3_k127_348886_3 RF-1 domain - - - 0.0000000000000000000000001814 108.0
BYDH3_k127_348886_4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000057 53.0
BYDH3_k127_3499537_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 2.847e-201 634.0
BYDH3_k127_3499537_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004382 486.0
BYDH3_k127_3499537_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008979 452.0
BYDH3_k127_3499537_3 PFAM Amino acid-binding ACT - - - 0.000000000000000000000000000000000000000000000000000000001059 205.0
BYDH3_k127_3499537_4 Trap-type c4-dicarboxylate transport system, small permease component K11689 - - 0.00000000000000000000000000000008568 131.0
BYDH3_k127_3499537_5 amino acid-binding ACT - - - 0.000000000000000000004698 97.0
BYDH3_k127_3515083_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 6.741e-229 729.0
BYDH3_k127_3515083_1 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005444 525.0
BYDH3_k127_3515083_10 - - - - 0.0000000000000000000000000000003856 127.0
BYDH3_k127_3515083_11 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000001682 86.0
BYDH3_k127_3515083_2 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 355.0
BYDH3_k127_3515083_3 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003792 248.0
BYDH3_k127_3515083_4 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000827 246.0
BYDH3_k127_3515083_5 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000005563 241.0
BYDH3_k127_3515083_6 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.000000000000000000000000000000000000000000000000000000000000006125 222.0
BYDH3_k127_3515083_7 Bacterial regulatory proteins, crp family - - - 0.000000000000000000000000000000000000000000000000000000000000007974 222.0
BYDH3_k127_3515083_8 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000000000000000000000000000000003337 144.0
BYDH3_k127_3515083_9 DsrC like protein K11179,K17218 - 1.8.5.4 0.00000000000000000000000000000004647 128.0
BYDH3_k127_3552709_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000002387 184.0
BYDH3_k127_3552709_1 acyl-CoA dehydrogenase - - - 0.0000000005388 70.0
BYDH3_k127_3649330_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 356.0
BYDH3_k127_3649330_1 Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB K16092 GO:0003674,GO:0005215 - 0.00000000000000000000638 103.0
BYDH3_k127_3649330_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K13829 - 2.7.1.71,4.2.3.4 0.0000000002008 64.0
BYDH3_k127_3704131_0 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 472.0
BYDH3_k127_3704131_1 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 328.0
BYDH3_k127_3704131_3 Ribonuclease R winged-helix domain K09720 - - 0.000000000000000000000077 98.0
BYDH3_k127_3704131_4 heptosyltransferase K02849 - - 0.0000000000000009461 80.0
BYDH3_k127_3704131_5 Lipopolysaccharide heptosyltransferase III K02849 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0071704,GO:0071967,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.000000000000381 76.0
BYDH3_k127_3717191_0 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005405 491.0
BYDH3_k127_3717191_1 keratinocyte proliferation K15734 GO:0000122,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001523,GO:0003674,GO:0003824,GO:0004745,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006066,GO:0006081,GO:0006355,GO:0006357,GO:0006629,GO:0006720,GO:0006721,GO:0006950,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010817,GO:0012505,GO:0016020,GO:0016101,GO:0016491,GO:0016614,GO:0016616,GO:0017053,GO:0019219,GO:0019222,GO:0031056,GO:0031057,GO:0031058,GO:0031063,GO:0031065,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031401,GO:0031984,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032991,GO:0033043,GO:0033044,GO:0033555,GO:0033613,GO:0034308,GO:0034754,GO:0035065,GO:0035067,GO:0042175,GO:0042445,GO:0042572,GO:0042574,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043616,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050673,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090311,GO:0090312,GO:0098827,GO:0140110,GO:1901615,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:1905268,GO:1905269,GO:2000112,GO:2000113,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252 1.1.1.105 0.0000000000000000000000000000000000000000000000000000000000009864 222.0
BYDH3_k127_3717191_2 - - - - 0.00000000000000000000000000000000000000000000000000000000001507 214.0
BYDH3_k127_3717191_3 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000005153 159.0
BYDH3_k127_3717191_4 4Fe-4S dicluster domain K00124 - - 0.00000007591 57.0
BYDH3_k127_3725379_0 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045 524.0
BYDH3_k127_3725379_1 Oxidoreductase FAD-binding domain K05916 - 1.14.12.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007787 279.0
BYDH3_k127_3725379_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.00001675 50.0
BYDH3_k127_3753189_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 5.3e-221 694.0
BYDH3_k127_3753189_1 oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 346.0
BYDH3_k127_3753189_2 PFAM Type II secretion system protein E K02669 - - 0.00000000000000000000000000000000000000000000008097 185.0
BYDH3_k127_3753189_3 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000000000001509 181.0
BYDH3_k127_3753189_4 Protein of unknown function (DUF3015) - - - 0.000000000000000000000000000000000000000004081 160.0
BYDH3_k127_3753189_5 Domain of unknown function (DUF4105) - - - 0.00000000000000000000000000000000000000002765 158.0
BYDH3_k127_3753189_6 PFAM DRTGG domain - - - 0.00000000000000000000000000000000003881 137.0
BYDH3_k127_3753189_7 PFAM FlhB HrpN YscU SpaS Family K04061 - - 0.000000000000000000000004597 105.0
BYDH3_k127_3753189_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000008579 102.0
BYDH3_k127_3788390_0 Biotin and Thiamin Synthesis associated K03150 - 4.1.99.19 1.145e-204 643.0
BYDH3_k127_3788390_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 478.0
BYDH3_k127_3788390_2 SMART Elongator protein 3 MiaB NifB K01012,K16180 - 2.8.1.6,5.4.99.58 0.000000000000000000000000000000000000000000000000003917 186.0
BYDH3_k127_3788390_3 SMART Elongator protein 3 MiaB NifB K01012,K16180 - 2.8.1.6,5.4.99.58 0.000000000000000000000000000000000000000000000002047 178.0
BYDH3_k127_3788390_4 Hydrogenase maturation GTPase HydF - - - 0.00000000000000000000000000000000000009594 148.0
BYDH3_k127_3788390_5 Iron hydrogenase small subunit K00336,K18332 - 1.12.1.3,1.6.5.3 0.00000000000000000000000000000004888 126.0
BYDH3_k127_3788390_6 iron-only hydrogenase system regulator - - - 0.000000000000000000000000004425 112.0
BYDH3_k127_3788390_7 PFAM GTP-binding protein HSR1-related - - - 0.000000000000001089 78.0
BYDH3_k127_3788390_8 Biotin and Thiamin Synthesis associated K03150 - 4.1.99.19 0.000316 44.0
BYDH3_k127_3790771_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031420,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 2.551e-252 791.0
BYDH3_k127_3790771_1 PFAM response regulator receiver K11384 - - 3.753e-198 627.0
BYDH3_k127_3790771_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K11383 - 2.7.13.3 5.197e-195 625.0
BYDH3_k127_3790771_3 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004722 404.0
BYDH3_k127_3810196_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 8.45e-322 1011.0
BYDH3_k127_3810196_1 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006248 445.0
BYDH3_k127_3810196_2 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000001659 194.0
BYDH3_k127_3810196_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000000000002425 188.0
BYDH3_k127_3810196_4 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000003537 50.0
BYDH3_k127_3848503_0 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009535 476.0
BYDH3_k127_3848503_1 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000003694 108.0
BYDH3_k127_3855761_0 Type VI secretion system, TssF K11896 - - 1.982e-249 782.0
BYDH3_k127_3855761_1 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 5.491e-220 685.0
BYDH3_k127_3855761_2 type VI secretion protein K11895 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 306.0
BYDH3_k127_3855761_3 Type VI secretion system effector, Hcp K11903 - - 0.00000000000000000000000000000000000000000000000000000000000776 211.0
BYDH3_k127_3855761_4 Gene 25-like lysozyme K11897 - - 0.0000000000000000000000000000000003712 139.0
BYDH3_k127_3855761_5 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.000000000000000000000000001618 112.0
BYDH3_k127_3855761_6 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 0.000000000000002219 75.0
BYDH3_k127_3863888_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001287 237.0
BYDH3_k127_3863888_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000000449 200.0
BYDH3_k127_3863888_2 including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000678 113.0
BYDH3_k127_3863888_3 Phosphoribosyl transferase domain - - - 0.000000000000000000000556 100.0
BYDH3_k127_3923796_0 ABC-type branched-chain amino acid transport systems, periplasmic component K01997,K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008655 439.0
BYDH3_k127_3923796_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000004759 115.0
BYDH3_k127_3923796_2 EamA-like transporter family - - - 0.0000000000000000000000003556 107.0
BYDH3_k127_3929685_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 464.0
BYDH3_k127_3929685_1 Sigma-54 factor interaction domain-containing protein K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 450.0
BYDH3_k127_3929685_2 Cellulose biosynthesis protein BcsQ K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003357 286.0
BYDH3_k127_3929685_3 PFAM ATP-binding region, ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004879 291.0
BYDH3_k127_3929685_4 Protein of unknown function (DUF1254) - - - 0.0000000000000000000000000000000000000000000000000000000000001405 230.0
BYDH3_k127_3929685_5 HEAT repeat - - - 0.000009376 56.0
BYDH3_k127_3929685_6 lipoprotein NlpE involved in copper resistance - - - 0.0001491 49.0
BYDH3_k127_3929685_7 - - - - 0.0003362 49.0
BYDH3_k127_3956660_0 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 405.0
BYDH3_k127_3956660_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000001586 117.0
BYDH3_k127_3956660_2 'glutamate synthase K00123 - 1.17.1.9 0.00000000000000000000000009353 111.0
BYDH3_k127_3956660_3 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.000000000006638 69.0
BYDH3_k127_398577_0 pfam abc K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000002811 254.0
BYDH3_k127_398577_1 PFAM binding-protein-dependent transport systems inner membrane component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002229 247.0
BYDH3_k127_398577_2 Bacterial extracellular solute-binding protein K02020 - - 0.000000000000000000000000000000000000000000000000000000000000002932 221.0
BYDH3_k127_398577_3 FmdE, Molybdenum formylmethanofuran dehydrogenase operon K11261 - 1.2.7.12 0.00000000000000000000000000000000000000000000000000000000000002672 218.0
BYDH3_k127_399632_0 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000001058 257.0
BYDH3_k127_399632_1 tRNA processing K04075,K14058 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000004418 242.0
BYDH3_k127_399632_2 Memo-like protein K06990 - - 0.000000000000000000000000000000000000002513 157.0
BYDH3_k127_3999112_0 Acyl-CoA dehydrogenase N terminal K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 612.0
BYDH3_k127_3999112_1 Helicase conserved C-terminal domain K10843 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 602.0
BYDH3_k127_3999112_10 Peptidase family M48 - - - 0.00000000000000000000000000000000003715 150.0
BYDH3_k127_3999112_11 cellulase activity K18197 - 4.2.2.23 0.00000000000002278 82.0
BYDH3_k127_3999112_12 Helicase conserved C-terminal domain - - - 0.00000000004218 75.0
BYDH3_k127_3999112_13 alginic acid biosynthetic process K12287 - - 0.00000000007652 72.0
BYDH3_k127_3999112_14 PFAM AMP-dependent synthetase and ligase K00666,K01897 - 6.2.1.3 0.00006735 46.0
BYDH3_k127_3999112_15 domain, Protein - - - 0.0003438 51.0
BYDH3_k127_3999112_2 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 569.0
BYDH3_k127_3999112_3 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 503.0
BYDH3_k127_3999112_4 glycosyl transferase family 2 K21349 - 2.4.1.268 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003113 485.0
BYDH3_k127_3999112_5 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 375.0
BYDH3_k127_3999112_6 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009893 367.0
BYDH3_k127_3999112_7 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 310.0
BYDH3_k127_3999112_8 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685,K07053 - 3.1.26.3,3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000000665 229.0
BYDH3_k127_3999112_9 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000001009 168.0
BYDH3_k127_401299_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 4.73e-240 756.0
BYDH3_k127_401299_1 Carbonic anhydrase K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000028 206.0
BYDH3_k127_401299_2 PFAM ATP-binding region, ATPase domain protein - - - 0.0000000000000000000000000000000000008119 143.0
BYDH3_k127_401299_3 DRTGG domain - - - 0.0000000000000000000000000008296 120.0
BYDH3_k127_401299_4 DRTGG domain - - - 0.000000000000000000000000004653 113.0
BYDH3_k127_401299_5 PFAM PHP domain K07053 - 3.1.3.97 0.000000000000000000000002086 105.0
BYDH3_k127_4040896_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K05299 - 1.17.1.10,1.17.1.9 1.888e-206 655.0
BYDH3_k127_4040896_1 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007833 623.0
BYDH3_k127_4040896_10 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001408 252.0
BYDH3_k127_4040896_11 histidine kinase HAMP region domain protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002811 263.0
BYDH3_k127_4040896_12 His Kinase A (phosphoacceptor) domain K02484 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000001784 243.0
BYDH3_k127_4040896_13 Sulfite reductase, subunit A - - - 0.000000000000000000000000000000000000000000000000000001687 208.0
BYDH3_k127_4040896_14 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000000000000000000000000000000000000000002091 192.0
BYDH3_k127_4040896_15 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000001479 203.0
BYDH3_k127_4040896_16 PFAM molybdopterin oxidoreductase Fe4S4 region - - - 0.00000000000000000000000000000000000000000000001149 180.0
BYDH3_k127_4040896_17 Two component signalling adaptor domain K03408 - - 0.00000000000000000000000000000000000000000004012 165.0
BYDH3_k127_4040896_18 NUDIX domain - - - 0.00000000000000000000000000000000000000000669 161.0
BYDH3_k127_4040896_19 PFAM response regulator receiver K03413 - - 0.00000000000000000000000000000000000000001236 159.0
BYDH3_k127_4040896_2 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 402.0
BYDH3_k127_4040896_20 PTS system fructose IIA component K02793 - 2.7.1.191 0.00000000000000000000000000000000003362 138.0
BYDH3_k127_4040896_21 PFAM PTS system sorbose subfamily IIB component K02794 - 2.7.1.191 0.000000000000000000000000003305 115.0
BYDH3_k127_4040896_22 phosphorelay signal transduction system - - - 0.00000000000000000000000002156 113.0
BYDH3_k127_4040896_23 peptidase U32 - - - 0.000000000000000000575 89.0
BYDH3_k127_4040896_24 PFAM response regulator receiver - - - 0.000000000000000001203 90.0
BYDH3_k127_4040896_25 STAS domain K04749 - - 0.0000000000000009066 80.0
BYDH3_k127_4040896_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 401.0
BYDH3_k127_4040896_4 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 402.0
BYDH3_k127_4040896_5 AAA domain (Cdc48 subfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 392.0
BYDH3_k127_4040896_6 histidine kinase HAMP region domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 400.0
BYDH3_k127_4040896_7 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 381.0
BYDH3_k127_4040896_8 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004044 310.0
BYDH3_k127_4040896_9 Oxidoreductase NAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003416 282.0
BYDH3_k127_4071541_0 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 326.0
BYDH3_k127_4071541_1 cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000005195 245.0
BYDH3_k127_4071541_2 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000103 224.0
BYDH3_k127_4071541_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.0000000000000000000000000000000000000000007177 167.0
BYDH3_k127_4071541_4 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.000000000000000000000000000000000000179 142.0
BYDH3_k127_4071541_5 YtkA-like - - - 0.0000007311 57.0
BYDH3_k127_4099767_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 9.016e-213 676.0
BYDH3_k127_4099767_1 Peptidase dimerisation domain K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 355.0
BYDH3_k127_4099767_2 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 347.0
BYDH3_k127_4099767_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 314.0
BYDH3_k127_4099767_4 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008006 267.0
BYDH3_k127_4099767_5 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000084 213.0
BYDH3_k127_4099767_6 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000002449 176.0
BYDH3_k127_4099767_7 Putative TM nitroreductase - - - 0.00000000000000000000000000000001927 133.0
BYDH3_k127_4099767_8 - - - - 0.000000000000000000000001262 105.0
BYDH3_k127_4277609_0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 390.0
BYDH3_k127_4277609_1 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003585 361.0
BYDH3_k127_4277609_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000008598 147.0
BYDH3_k127_4277609_3 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K01083,K06131,K06915 - 3.1.3.8 0.00000003619 60.0
BYDH3_k127_4303496_0 Belongs to the transketolase family K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984 604.0
BYDH3_k127_4303496_1 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 492.0
BYDH3_k127_4303496_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00033,K00616,K01810,K08300,K13810 - 1.1.1.343,1.1.1.44,2.2.1.2,3.1.26.12,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007421 400.0
BYDH3_k127_4377727_0 Domain of unknown function (DUF3552) K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 518.0
BYDH3_k127_4377727_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 450.0
BYDH3_k127_4377727_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 357.0
BYDH3_k127_4377727_3 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000007992 125.0
BYDH3_k127_4377727_4 GAF domain - - - 0.000008955 54.0
BYDH3_k127_4377727_5 Sterol carrier protein - - - 0.00003438 54.0
BYDH3_k127_4377727_6 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0000921,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0030428,GO:0031106,GO:0032153,GO:0032185,GO:0032505,GO:0032506,GO:0034622,GO:0042802,GO:0043093,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0065003,GO:0070925,GO:0071840,GO:0090529,GO:1902410,GO:1903047 - 0.00005458 49.0
BYDH3_k127_4490345_0 PFAM Acetyl-CoA hydrolase transferase - - - 5.523e-205 645.0
BYDH3_k127_4490345_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K16066 - 1.1.1.381 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 313.0
BYDH3_k127_4618476_0 Heat shock 70 kDa protein K04043 - - 1.387e-295 918.0
BYDH3_k127_4618476_1 PFAM Ketose-bisphosphate aldolase, class-II K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005755 604.0
BYDH3_k127_4618476_10 PFAM Band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 339.0
BYDH3_k127_4618476_11 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009188 334.0
BYDH3_k127_4618476_12 UDP-N-acetylglucosamine 2-epimerase activity K01791,K13019 - 5.1.3.14,5.1.3.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 330.0
BYDH3_k127_4618476_13 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 312.0
BYDH3_k127_4618476_14 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007526 307.0
BYDH3_k127_4618476_15 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 314.0
BYDH3_k127_4618476_16 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0004425,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 304.0
BYDH3_k127_4618476_17 Peptidase C26 K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000002515 227.0
BYDH3_k127_4618476_18 PFAM CBS domain containing protein K06189 - - 0.00000000000000000000000000000000000000000000000000000000007615 215.0
BYDH3_k127_4618476_19 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000001317 169.0
BYDH3_k127_4618476_2 Arginyl tRNA synthetase N terminal dom K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005472 591.0
BYDH3_k127_4618476_20 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000000000000219 155.0
BYDH3_k127_4618476_21 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000007481 113.0
BYDH3_k127_4618476_22 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000305 77.0
BYDH3_k127_4618476_23 Tetratricopeptide repeat - - - 0.000000000000004102 84.0
BYDH3_k127_4618476_24 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.00000000000001909 83.0
BYDH3_k127_4618476_25 Cyclic nucleotide-monophosphate binding domain K04739 - - 0.0000000001424 72.0
BYDH3_k127_4618476_26 Regulatory protein, FmdB family - - - 0.0000004409 57.0
BYDH3_k127_4618476_27 AAA domain K07028 - - 0.0002211 51.0
BYDH3_k127_4618476_3 VWA containing CoxE family protein K09989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007194 521.0
BYDH3_k127_4618476_4 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 421.0
BYDH3_k127_4618476_5 AAA domain (Cdc48 subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009153 415.0
BYDH3_k127_4618476_6 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 397.0
BYDH3_k127_4618476_7 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005823 380.0
BYDH3_k127_4618476_8 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K01665 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 374.0
BYDH3_k127_4618476_9 TIGRFAM TraB family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003359 362.0
BYDH3_k127_4632251_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1529.0
BYDH3_k127_4632251_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004736 344.0
BYDH3_k127_4632251_2 Protein of unknown function (DUF3830) - - - 0.0000000000000000000000000000000000000000000000000000000000006117 212.0
BYDH3_k127_4632251_3 Bacterial regulatory proteins, tetR family - - - 0.000000000001044 76.0
BYDH3_k127_4632251_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.00001017 47.0
BYDH3_k127_4653273_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 5.742e-269 844.0
BYDH3_k127_4653273_1 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005689 366.0
BYDH3_k127_4653273_2 Belongs to the peptidase S24 family K03503 - - 0.0000000000000000000000000000000000008131 144.0
BYDH3_k127_4653273_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000004957 86.0
BYDH3_k127_4654021_0 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 430.0
BYDH3_k127_4654021_1 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 400.0
BYDH3_k127_4654021_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000816 135.0
BYDH3_k127_4654021_3 Smr domain - - - 0.0000000000000000000000000007237 116.0
BYDH3_k127_4654021_4 Belongs to the peptidase S41A family K03797 GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016787,GO:0019538,GO:0023052,GO:0030163,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.102 0.0000002252 56.0
BYDH3_k127_4660122_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 3.23e-276 862.0
BYDH3_k127_4660122_1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus K00441,K21231 - 1.12.98.1,1.3.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006852 314.0
BYDH3_k127_4660122_2 Cysteine-rich domain K18928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 287.0
BYDH3_k127_4660122_3 indolepyruvate ferredoxin oxidoreductase, beta subunit K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000493 242.0
BYDH3_k127_4660122_4 WHG domain - - - 0.000000000000000000000000000000000000000000000000000000000012 213.0
BYDH3_k127_4708914_0 Iron-containing alcohol dehydrogenase K00001,K01714,K13954 - 1.1.1.1,4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006594 318.0
BYDH3_k127_4708914_1 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.00000000000000000000000000000000000000000000000000000003546 202.0
BYDH3_k127_4708914_2 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000000001752 154.0
BYDH3_k127_4708914_3 Protein involved in outer membrane biogenesis K07289,K09800 - - 0.000000000000000000000000000000000001535 154.0
BYDH3_k127_4708914_4 - - - - 0.00000000000000000000000000000000002832 136.0
BYDH3_k127_4759303_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 0.0 1710.0
BYDH3_k127_4759303_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 483.0
BYDH3_k127_4759303_2 PFAM GAF domain protein - - - 0.00000000000000000000000000000000000000000000000001371 187.0
BYDH3_k127_4790091_0 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 493.0
BYDH3_k127_4790091_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000001248 222.0
BYDH3_k127_4790091_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000004343 104.0
BYDH3_k127_4935043_0 Found in ATP-dependent protease La (LON) K01338 - 3.4.21.53 8.495e-245 781.0
BYDH3_k127_4935043_1 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 513.0
BYDH3_k127_4935043_10 amidase activity K03796 - - 0.000000000000000000000000000000000005917 147.0
BYDH3_k127_4935043_11 transcriptional regulator, AsnC family - - - 0.000000000000000000000000002173 118.0
BYDH3_k127_4935043_12 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000005438 111.0
BYDH3_k127_4935043_13 Carbon storage regulator homolog K03563 - - 0.0000000000000000002621 89.0
BYDH3_k127_4935043_15 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.00000002373 60.0
BYDH3_k127_4935043_16 ATP synthase I chain - - - 0.000000111 59.0
BYDH3_k127_4935043_17 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.000009178 50.0
BYDH3_k127_4935043_2 Cell shape determining protein MreB Mrl K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007629 411.0
BYDH3_k127_4935043_3 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005811 360.0
BYDH3_k127_4935043_4 Belongs to the flagella basal body rod proteins family K02396 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004643 304.0
BYDH3_k127_4935043_5 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000000000000001132 261.0
BYDH3_k127_4935043_6 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000004414 258.0
BYDH3_k127_4935043_7 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000000000000000000000002218 226.0
BYDH3_k127_4935043_8 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000006658 186.0
BYDH3_k127_4935043_9 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.000000000000000000000000000000000000002234 155.0
BYDH3_k127_493882_0 Belongs to the thiolase family K00626 - 2.3.1.9 1.256e-282 872.0
BYDH3_k127_493882_1 phenylacetate-CoA ligase Coenzyme F390 synthetase-like protein K01912 - 6.2.1.30 2.517e-226 707.0
BYDH3_k127_493882_10 Transcriptional regulator, TetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007986 258.0
BYDH3_k127_493882_11 PFAM Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.0000000000000000000000000000000000000000004637 162.0
BYDH3_k127_493882_12 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000002097 166.0
BYDH3_k127_493882_13 MaoC like domain - - - 0.00000000000000000000000000000001987 135.0
BYDH3_k127_493882_14 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000003632 136.0
BYDH3_k127_493882_15 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000005215 106.0
BYDH3_k127_493882_16 BetI-type transcriptional repressor, C-terminal - - - 0.000000000000000000001126 102.0
BYDH3_k127_493882_17 PFAM acyl-CoA dehydrogenase domain protein - - - 0.00000000000000844 76.0
BYDH3_k127_493882_18 Cupin domain - - - 0.00000000000001188 81.0
BYDH3_k127_493882_19 PFAM Stage II sporulation protein E (SpoIIE) - - - 0.000008677 57.0
BYDH3_k127_493882_2 Thiolase, C-terminal domain - - - 1.122e-197 622.0
BYDH3_k127_493882_3 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007219 541.0
BYDH3_k127_493882_4 PFAM AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 504.0
BYDH3_k127_493882_5 Acyl-CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 483.0
BYDH3_k127_493882_6 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006425 378.0
BYDH3_k127_493882_7 Acyl-CoA dehydrogenase, N-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 343.0
BYDH3_k127_493882_8 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 299.0
BYDH3_k127_493882_9 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009981 280.0
BYDH3_k127_4940575_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.864e-235 734.0
BYDH3_k127_4940575_1 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 1.086e-226 721.0
BYDH3_k127_4940575_10 FlhB HrpN YscU SpaS Family K02401 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 302.0
BYDH3_k127_4940575_11 sigma factor activity K02405,K03093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005798 262.0
BYDH3_k127_4940575_12 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001581 254.0
BYDH3_k127_4940575_13 PBS lyase HEAT domain protein repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000007272 230.0
BYDH3_k127_4940575_14 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000005283 214.0
BYDH3_k127_4940575_15 flagellar biosynthesis protein FlhF K02404 - - 0.0000000000000000000000000000000000000000000000000000000007615 214.0
BYDH3_k127_4940575_16 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.000000000000000000000000000000000000000000000000000000002989 206.0
BYDH3_k127_4940575_17 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000001446 206.0
BYDH3_k127_4940575_18 response regulator, receiver K03413 - - 0.000000000000000000000000000000000000000000000000000001417 194.0
BYDH3_k127_4940575_19 Divergent polysaccharide deacetylase K09798 - - 0.0000000000000000000000000000000000000000000000000008014 198.0
BYDH3_k127_4940575_2 PAS domain K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 625.0
BYDH3_k127_4940575_20 PFAM Metal-dependent hydrolase HDOD - - - 0.000000000000000000000000000000000000000000000001651 184.0
BYDH3_k127_4940575_21 AsmA-like C-terminal region - - - 0.00000000000000000000000000000000001995 150.0
BYDH3_k127_4940575_22 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000009745 137.0
BYDH3_k127_4940575_23 Response regulator receiver K03413 - - 0.00000000000000000000000000004406 120.0
BYDH3_k127_4940575_24 PFAM peptidase - - - 0.000000000000000000000000000391 127.0
BYDH3_k127_4940575_25 radical SAM domain protein K22318 - - 0.00000000000000000000000001583 116.0
BYDH3_k127_4940575_26 Transcription termination factor nusG - - - 0.000000000000000000003689 100.0
BYDH3_k127_4940575_27 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000005793 97.0
BYDH3_k127_4940575_28 ATP synthase B/B' CF(0) K02109 - - 0.00000000000000162 82.0
BYDH3_k127_4940575_29 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000001756 87.0
BYDH3_k127_4940575_3 radical SAM domain protein K22318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 521.0
BYDH3_k127_4940575_30 Protein of unknown function (FYDLN_acid) - - - 0.0000000003584 64.0
BYDH3_k127_4940575_31 PFAM Colicin V production protein K03558 - - 0.000000006148 63.0
BYDH3_k127_4940575_32 - - - - 0.0000008686 56.0
BYDH3_k127_4940575_33 Helix-turn-helix XRE-family like proteins - - - 0.000002324 57.0
BYDH3_k127_4940575_4 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006959 516.0
BYDH3_k127_4940575_5 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 507.0
BYDH3_k127_4940575_6 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 407.0
BYDH3_k127_4940575_7 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009979 392.0
BYDH3_k127_4940575_8 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000281 360.0
BYDH3_k127_4940575_9 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 318.0
BYDH3_k127_4944361_0 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007489 427.0
BYDH3_k127_4944361_1 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009833 394.0
BYDH3_k127_4944361_2 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 361.0
BYDH3_k127_4944361_3 extracellular solute-binding protein, family 5 K02035,K13893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 317.0
BYDH3_k127_4944361_4 UvrD-like helicase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002117 243.0
BYDH3_k127_4944361_5 Tellurite resistance protein TerB - - - 0.000000000000000000000000000009592 124.0
BYDH3_k127_4973907_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1021.0
BYDH3_k127_4973907_1 Belongs to the thiolase family K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004838 524.0
BYDH3_k127_4973907_2 Elongator protein 3, MiaB family, Radical SAM K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 447.0
BYDH3_k127_4973907_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 298.0
BYDH3_k127_499627_0 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008789 427.0
BYDH3_k127_499627_1 Histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 377.0
BYDH3_k127_499627_2 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005412 321.0
BYDH3_k127_499627_3 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007225 306.0
BYDH3_k127_499627_4 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 288.0
BYDH3_k127_499627_5 PFAM GtrA-like protein - - - 0.000000000000000000000000000000000000002862 151.0
BYDH3_k127_499627_6 Uncharacterised protein family UPF0066 - - - 0.0000000000000000000000000000002005 127.0
BYDH3_k127_499627_7 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000008777 108.0
BYDH3_k127_499627_8 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000002762 79.0
BYDH3_k127_5069632_0 PFAM acyl-CoA dehydrogenase domain protein K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007504 464.0
BYDH3_k127_5069632_1 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002833 408.0
BYDH3_k127_5069632_2 Domain of unknown function (DUF4037) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 369.0
BYDH3_k127_5069632_3 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 324.0
BYDH3_k127_5069632_4 Acyl-CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006245 285.0
BYDH3_k127_5069632_5 Protein of unknown function (DUF4125) - - - 0.000000000000000000000000000000000000000000000000009341 186.0
BYDH3_k127_5069632_6 binding domain protein - - - 0.00000886 48.0
BYDH3_k127_5111290_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 2.593e-288 895.0
BYDH3_k127_5111290_1 PFAM NAD-dependent epimerase dehydratase K01710,K01784,K02473,K08678 - 4.1.1.35,4.2.1.46,5.1.3.2,5.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 496.0
BYDH3_k127_5111290_2 NAD(P)H-binding K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 453.0
BYDH3_k127_5111290_3 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 342.0
BYDH3_k127_5111290_4 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000107 217.0
BYDH3_k127_5111290_5 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000003909 189.0
BYDH3_k127_514236_0 Endonuclease NucS K07503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001121 276.0
BYDH3_k127_514236_1 - - - - 0.000000000000000000000000000000001566 135.0
BYDH3_k127_5168792_0 Protein of unknown function (DUF3795) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 307.0
BYDH3_k127_5168792_1 TIGRFAM flagellar motor stator protein MotA K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 310.0
BYDH3_k127_5168792_2 OmpA MotB domain protein K02557 - - 0.000000000000000000000000000000000000000000000000000000000000051 224.0
BYDH3_k127_5168792_3 Amidohydrolase family - - - 0.00000000000000000000000000000000000000004095 169.0
BYDH3_k127_5168792_4 PFAM Peptidase C11, clostripain - - - 0.0000000000000000000000000000000000003549 160.0
BYDH3_k127_5168792_5 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000436 79.0
BYDH3_k127_5176721_0 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 507.0
BYDH3_k127_5176721_1 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007422 506.0
BYDH3_k127_517795_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 555.0
BYDH3_k127_517795_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 398.0
BYDH3_k127_517795_2 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 400.0
BYDH3_k127_517795_3 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000005839 254.0
BYDH3_k127_517795_4 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000004694 248.0
BYDH3_k127_517795_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000046 222.0
BYDH3_k127_517795_6 diguanylate cyclase - - - 0.000000000000000000000000000000000000000004963 167.0
BYDH3_k127_517795_7 4Fe-4S binding domain K00171 - 1.2.7.1 0.000000000000000000000000000000000000000223 151.0
BYDH3_k127_517795_8 PilZ domain - - - 0.0000000002991 70.0
BYDH3_k127_517795_9 protein conserved in bacteria K07184 - - 0.0000000009808 67.0
BYDH3_k127_5187229_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 344.0
BYDH3_k127_5187229_1 Putative exonuclease, RdgC K03554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 343.0
BYDH3_k127_5187229_10 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000001089 78.0
BYDH3_k127_5187229_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388,K16885,K16886 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000003377 273.0
BYDH3_k127_5187229_3 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000008124 243.0
BYDH3_k127_5187229_4 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K07306 - 1.8.5.3 0.000000000000000000000000000000000000000000000000000000000001739 214.0
BYDH3_k127_5187229_5 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000001496 199.0
BYDH3_k127_5187229_6 signal transduction HD GYP protein - - - 0.000000000000000000000000000000000000000000000000000003024 207.0
BYDH3_k127_5187229_7 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000008476 169.0
BYDH3_k127_5187229_8 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000002772 168.0
BYDH3_k127_5287720_0 asparagine K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007877 453.0
BYDH3_k127_5287720_1 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000001893 203.0
BYDH3_k127_5299414_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 383.0
BYDH3_k127_5323237_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 426.0
BYDH3_k127_5323237_1 Bacterial extracellular solute-binding protein, family 7 K11688,K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000006016 240.0
BYDH3_k127_5323237_2 TRAP transporter T-component - - - 0.000000000000000000000000000000000000000000003344 174.0
BYDH3_k127_5323237_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000002504 102.0
BYDH3_k127_5336419_0 type IV pilus assembly PilZ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 335.0
BYDH3_k127_5336419_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 299.0
BYDH3_k127_5336419_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 291.0
BYDH3_k127_5336419_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008053 278.0
BYDH3_k127_5336419_4 regulatory protein, arsR - - - 0.00000000000000000002083 96.0
BYDH3_k127_5336419_5 Belongs to the HesB IscA family - - - 0.0000000000000003216 82.0
BYDH3_k127_5336419_6 Belongs to the HesB IscA family - - - 0.000000000000001616 78.0
BYDH3_k127_5341507_0 AAA domain, putative AbiEii toxin, Type IV TA system K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 298.0
BYDH3_k127_5341507_1 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000000004976 240.0
BYDH3_k127_5341507_2 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.000000000000000000000000000000000000000000000000001692 186.0
BYDH3_k127_5417096_0 Aminopeptidase I zinc metalloprotease (M18) K01267 - 3.4.11.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 508.0
BYDH3_k127_5417096_1 Elongator protein 3, MiaB family, Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 396.0
BYDH3_k127_5417096_2 Histidine kinase K02482 - 2.7.13.3 0.00000001542 67.0
BYDH3_k127_5417096_3 NUDIX domain K03574 - 3.6.1.55 0.0000002778 52.0
BYDH3_k127_5437928_0 PFAM MotA TolQ ExbB proton channel K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008887 265.0
BYDH3_k127_5437928_1 PFAM OmpA MotB domain protein K02557 - - 0.00000000000000000000000002085 118.0
BYDH3_k127_5437928_2 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.00000000000000000000000002117 117.0
BYDH3_k127_5438336_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004047 283.0
BYDH3_k127_5438336_1 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.00000000000009832 73.0
BYDH3_k127_5555217_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006313 574.0
BYDH3_k127_5555217_1 xanthine dehydrogenase activity K11178 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007275 282.0
BYDH3_k127_5555217_2 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000002524 221.0
BYDH3_k127_5585457_0 Amino acid kinase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008541 416.0
BYDH3_k127_5585457_1 PBP superfamily domain K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 385.0
BYDH3_k127_5585457_10 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.00000000000000000000000000000000000000001922 166.0
BYDH3_k127_5585457_11 CrtC N-terminal lipocalin domain - - - 0.0000000000000000000000000000000000002047 154.0
BYDH3_k127_5585457_12 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000001684 129.0
BYDH3_k127_5585457_13 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.0000000000000000002208 98.0
BYDH3_k127_5585457_14 - - - - 0.000000000000000001008 87.0
BYDH3_k127_5585457_15 PFAM Metallophosphoesterase K07096 - - 0.000000007388 68.0
BYDH3_k127_5585457_16 MoeA domain protein domain I and II K03750,K07219 - 2.10.1.1 0.000005778 50.0
BYDH3_k127_5585457_2 ATPases associated with a variety of cellular activities K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 314.0
BYDH3_k127_5585457_3 tRNA wobble cytosine modification - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 291.0
BYDH3_k127_5585457_4 HlyD membrane-fusion protein of T1SS K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005358 289.0
BYDH3_k127_5585457_5 PFAM Enoyl-CoA hydratase isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002435 251.0
BYDH3_k127_5585457_6 Binding-protein-dependent transport system inner membrane component K05773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001537 245.0
BYDH3_k127_5585457_7 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000008162 197.0
BYDH3_k127_5585457_8 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000001247 190.0
BYDH3_k127_5585457_9 Protein of unknown function (DUF3124) - - - 0.000000000000000000000000000000000000000000451 163.0
BYDH3_k127_5595088_0 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 385.0
BYDH3_k127_5595088_1 repeat protein - - - 0.000000000000000000001141 108.0
BYDH3_k127_5598993_0 domain protein K03455 - - 1.255e-240 760.0
BYDH3_k127_5598993_1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) K05967 - - 0.000000000000000000000000003116 115.0
BYDH3_k127_5598993_2 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.0000000000000000000005424 98.0
BYDH3_k127_5601343_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 584.0
BYDH3_k127_5601343_1 Flavodoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 450.0
BYDH3_k127_5601343_10 Sir2 family K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002495 250.0
BYDH3_k127_5601343_11 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000001132 243.0
BYDH3_k127_5601343_12 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0003674,GO:0003824,GO:0004735,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0017144,GO:0018130,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0055129,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000001375 233.0
BYDH3_k127_5601343_13 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000006875 241.0
BYDH3_k127_5601343_14 PFAM Desulfoferrodoxin ferrous iron-binding region K05919 - 1.15.1.2 0.0000000000000000000000000000000000000000000000000000000000000001968 224.0
BYDH3_k127_5601343_15 Ferritin-like domain K02217 - 1.16.3.2 0.000000000000000000000000000000000000000000000000000000000000001175 223.0
BYDH3_k127_5601343_16 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000007944 220.0
BYDH3_k127_5601343_17 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000002951 200.0
BYDH3_k127_5601343_18 His Kinase A (phosphoacceptor) domain K00694,K03406,K07315,K14986 - 2.4.1.12,2.7.13.3,3.1.3.3 0.0000000000000000000000000000000000000000000000000001759 209.0
BYDH3_k127_5601343_19 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000001428 188.0
BYDH3_k127_5601343_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 444.0
BYDH3_k127_5601343_20 Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000001248 183.0
BYDH3_k127_5601343_21 Coenzyme A transferase K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000000009106 183.0
BYDH3_k127_5601343_22 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000001169 167.0
BYDH3_k127_5601343_23 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000002744 160.0
BYDH3_k127_5601343_24 Anaphase-promoting complex, cyclosome, subunit 3 - - - 0.00000000000000000000000000000000000000001916 171.0
BYDH3_k127_5601343_25 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000004846 127.0
BYDH3_k127_5601343_26 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000004932 131.0
BYDH3_k127_5601343_27 PFAM Rubredoxin-type Fe(Cys)4 protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000001402 100.0
BYDH3_k127_5601343_29 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000009323 74.0
BYDH3_k127_5601343_3 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 398.0
BYDH3_k127_5601343_30 Belongs to the SUA5 family K07566 GO:0000049,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.7.7.87 0.00000000002269 66.0
BYDH3_k127_5601343_31 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.0000000004444 65.0
BYDH3_k127_5601343_33 Belongs to the flagella basal body rod proteins family K02388 - - 0.0001663 49.0
BYDH3_k127_5601343_4 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 389.0
BYDH3_k127_5601343_5 AAA ATPase, central domain protein K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 377.0
BYDH3_k127_5601343_6 UDP-glucose pyrophosphorylase K00972 - 2.7.7.23,2.7.7.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 312.0
BYDH3_k127_5601343_7 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 293.0
BYDH3_k127_5601343_8 Protein of unknown function (DUF2400) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002331 279.0
BYDH3_k127_5601343_9 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000002134 270.0
BYDH3_k127_5635504_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.966e-263 824.0
BYDH3_k127_5635504_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005815 399.0
BYDH3_k127_5635504_10 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589,K13052 - - 0.00001043 51.0
BYDH3_k127_5635504_2 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007934 355.0
BYDH3_k127_5635504_3 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 342.0
BYDH3_k127_5635504_4 PFAM Rhomboid family protein - - - 0.000000000000000000000000000000000000000003434 164.0
BYDH3_k127_5635504_5 PFAM Pilus assembly protein PilO K02664 - - 0.000000000000000000000000000000008072 136.0
BYDH3_k127_5635504_6 Fimbrial assembly protein (PilN) K02663 - - 0.0000000000000000000001261 104.0
BYDH3_k127_5635504_7 Pilus assembly protein, PilP K02665 - - 0.00000000000000131 83.0
BYDH3_k127_5635504_8 Protein of unknown function (DUF2905) - - - 0.00000000000009301 73.0
BYDH3_k127_5635504_9 Tetratricopeptide repeat-like domain - - - 0.0000000000001699 79.0
BYDH3_k127_5635579_0 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 302.0
BYDH3_k127_5635579_1 SOUL heme-binding protein - - - 0.0000000000000000000000000000000000000000000001586 173.0
BYDH3_k127_5635579_2 Membrane - - - 0.00000000000000000000000000000000001461 142.0
BYDH3_k127_5635579_3 PFAM ABC transporter K06020 - 3.6.3.25 0.000000000000000001026 85.0
BYDH3_k127_5694349_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 408.0
BYDH3_k127_5694349_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000002963 246.0
BYDH3_k127_5694349_2 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000001375 166.0
BYDH3_k127_5694349_3 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000003496 103.0
BYDH3_k127_5712603_0 AMP-binding enzyme C-terminal domain K00666,K12508 - 6.2.1.34 1.561e-233 733.0
BYDH3_k127_5712603_1 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 373.0
BYDH3_k127_5712603_2 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009251 297.0
BYDH3_k127_5712603_3 pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000000000000001255 166.0
BYDH3_k127_5712603_4 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.000000000000000000000000000000003448 145.0
BYDH3_k127_5732194_0 NAD(P)H dehydrogenase K00355 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000001017 202.0
BYDH3_k127_5732194_1 MMPL family K07003 - - 0.000000000000000000000000000184 131.0
BYDH3_k127_5732194_2 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000004082 93.0
BYDH3_k127_5734021_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 381.0
BYDH3_k127_5734021_1 Putative TM nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004248 275.0
BYDH3_k127_5734021_10 WD40-like Beta Propeller Repeat - - - 0.0003226 51.0
BYDH3_k127_5734021_2 TIGRFAM formate dehydrogenase family accessory protein FdhD K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000321 222.0
BYDH3_k127_5734021_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000000000001964 196.0
BYDH3_k127_5734021_4 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000008368 181.0
BYDH3_k127_5734021_5 Thioesterase superfamily K02614 - - 0.00000000000000000000000000000000003186 138.0
BYDH3_k127_5734021_6 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.00000000000000000000000000003357 126.0
BYDH3_k127_5734021_7 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000003197 97.0
BYDH3_k127_5734021_8 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000004206 75.0
BYDH3_k127_5734021_9 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000007794 71.0
BYDH3_k127_5750059_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006045 416.0
BYDH3_k127_5776863_0 photosynthesis K12132,K20543 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 434.0
BYDH3_k127_5776863_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000002191 177.0
BYDH3_k127_5776863_2 COG0811 Biopolymer transport proteins - - - 0.000000000000000000000000000000000005787 144.0
BYDH3_k127_5776863_3 Forkhead associated domain - - - 0.000000000000000000000000003496 129.0
BYDH3_k127_5776863_5 Biopolymer transport protein ExbD/TolR - - - 0.0000000007242 66.0
BYDH3_k127_5776863_6 COG0848 Biopolymer transport protein - - - 0.00000008272 60.0
BYDH3_k127_5858512_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1105.0
BYDH3_k127_5858512_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 329.0
BYDH3_k127_5858512_2 Peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007925 300.0
BYDH3_k127_5858512_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001631 292.0
BYDH3_k127_5858512_4 TIGRFAM geranylgeranyl reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002356 259.0
BYDH3_k127_5858512_5 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000008495 250.0
BYDH3_k127_5858512_6 Belongs to the acetyltransferase family. ArgA subfamily K00619,K14681 GO:0003674,GO:0003824,GO:0004042,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016043,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0040007,GO:0042450,GO:0042802,GO:0042803,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 0.000000000000000000000000000000000000000000001085 170.0
BYDH3_k127_5858512_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000006517 158.0
BYDH3_k127_5914215_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 1.059e-295 915.0
BYDH3_k127_5914215_1 PFAM Cys Met metabolism K01739,K01760,K01761 - 2.5.1.48,4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000645 486.0
BYDH3_k127_5914215_10 Protein of unknown function (FYDLN_acid) - - - 0.000000005918 61.0
BYDH3_k127_5914215_11 self proteolysis - - - 0.0008415 53.0
BYDH3_k127_5914215_2 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 297.0
BYDH3_k127_5914215_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K20276 - - 0.000000000000000000000000000000000000000000000000000004291 216.0
BYDH3_k127_5914215_4 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000006602 190.0
BYDH3_k127_5914215_5 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000001199 152.0
BYDH3_k127_5914215_6 SMART HNH nuclease - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000002698 147.0
BYDH3_k127_5914215_7 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000005564 116.0
BYDH3_k127_5914215_8 metallopeptidase activity - - - 0.00000000000000001741 98.0
BYDH3_k127_5914215_9 ThiS family - - - 0.00000000000000003386 84.0
BYDH3_k127_5918212_0 Phage late control gene D protein (GPD) K11904 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 452.0
BYDH3_k127_5918212_1 type VI secretion protein K11900,K11901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 386.0
BYDH3_k127_5918212_2 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.0000000000000000000000000000001413 125.0
BYDH3_k127_5918212_3 Domain of unknown function (DUF5086) - - - 0.0000000000000000000007499 103.0
BYDH3_k127_5932930_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 2.863e-223 701.0
BYDH3_k127_5932930_1 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 442.0
BYDH3_k127_5932930_2 ATP-grasp domain K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000466 199.0
BYDH3_k127_5932930_3 DoxX - - - 0.0000000000000000000000000000000007734 137.0
BYDH3_k127_5932930_4 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000006444 65.0
BYDH3_k127_5932930_5 Rhodanese Homology Domain - - - 0.0009594 44.0
BYDH3_k127_5945751_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 451.0
BYDH3_k127_5945751_1 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000002787 189.0
BYDH3_k127_5945751_2 Ferredoxin K17992 - 1.12.1.3 0.00000000000000000000000000000000000002794 147.0
BYDH3_k127_5945751_3 Putative Fe-S cluster K02482 - 2.7.13.3 0.00000000000000000000001178 109.0
BYDH3_k127_6008376_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 582.0
BYDH3_k127_6008376_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 486.0
BYDH3_k127_6008376_2 PFAM 3-hydroxyacyl-CoA dehydrogenase K00074,K15016 - 1.1.1.157,1.1.1.35,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 460.0
BYDH3_k127_6008376_3 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003794 466.0
BYDH3_k127_6008376_4 Glycosyl transferase family 2 K09931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 362.0
BYDH3_k127_6008376_5 Protein of unknown function (DUF3047) - - - 0.00000000000000000000000000000000000000000000000000000000000004815 231.0
BYDH3_k127_6008376_6 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000002689 174.0
BYDH3_k127_6008376_7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000655 111.0
BYDH3_k127_6008376_8 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000009274 95.0
BYDH3_k127_6008376_9 Protein of unknown function (DUF1499) - - - 0.0000001892 52.0
BYDH3_k127_6082278_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000002113 217.0
BYDH3_k127_6082278_1 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000006404 139.0
BYDH3_k127_6082278_2 Protein of unknown function DUF45 K07043 - - 0.000000000000000000000000008218 117.0
BYDH3_k127_6082278_3 Glycogen recognition site of AMP-activated protein kinase - - - 0.000000001015 62.0
BYDH3_k127_6204963_0 Histone deacetylase domain K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 492.0
BYDH3_k127_6204963_1 PFAM Hydantoinase oxoprolinase - - - 0.0000000000000000000002184 100.0
BYDH3_k127_6204963_2 PFAM histone deacetylase superfamily - - - 0.000000000000000000000794 99.0
BYDH3_k127_6204963_3 PFAM Patatin K07001 - - 0.0003443 44.0
BYDH3_k127_6248842_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 424.0
BYDH3_k127_6248842_1 Nitrate reductase gamma subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 387.0
BYDH3_k127_6248842_10 DnaJ molecular chaperone homology domain - - - 0.000000000000009091 87.0
BYDH3_k127_6248842_11 heat shock protein binding K05516 - - 0.0000006031 62.0
BYDH3_k127_6248842_12 - - - - 0.00001025 54.0
BYDH3_k127_6248842_2 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003244 333.0
BYDH3_k127_6248842_3 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002688 278.0
BYDH3_k127_6248842_4 stress-induced mitochondrial fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005699 273.0
BYDH3_k127_6248842_5 Nitrate reductase gamma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003412 260.0
BYDH3_k127_6248842_6 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074,K01782 - 1.1.1.157,1.1.1.35,4.2.1.17,5.1.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000001495 263.0
BYDH3_k127_6248842_7 PFAM regulatory protein TetR K13770 - - 0.0000000000000000000000000000000000000000000000000000000000005323 216.0
BYDH3_k127_6248842_8 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000001442 227.0
BYDH3_k127_6248842_9 Mannose-6-phosphate isomerase - - - 0.00000000000000000000000000000000000000000298 158.0
BYDH3_k127_6250347_0 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 443.0
BYDH3_k127_6250347_1 Zinc transporter K07238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 404.0
BYDH3_k127_6250347_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000001283 115.0
BYDH3_k127_6250347_3 cellulose binding K13735 - - 0.00000000000000000001545 104.0
BYDH3_k127_6264225_0 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 525.0
BYDH3_k127_6264225_1 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 519.0
BYDH3_k127_6264225_10 - - - - 0.0000000000000001021 91.0
BYDH3_k127_6264225_11 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000003674 69.0
BYDH3_k127_6264225_13 Bacterial regulatory proteins, tetR family - - - 0.00000000002162 73.0
BYDH3_k127_6264225_14 Beta-ketoacyl synthase, N-terminal domain - - - 0.000003068 51.0
BYDH3_k127_6264225_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 431.0
BYDH3_k127_6264225_3 Acyl-CoA dehydrogenase type 2 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006957 369.0
BYDH3_k127_6264225_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 293.0
BYDH3_k127_6264225_5 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001342 282.0
BYDH3_k127_6264225_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001398 251.0
BYDH3_k127_6264225_7 Lysozyme inhibitor LprI - - - 0.0000000000000000000000000000000000000000000000000000000000000004445 230.0
BYDH3_k127_6264225_8 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000000000000000000000000000000000000000000001585 225.0
BYDH3_k127_6264225_9 Acetoacetate decarboxylase (ADC) - - - 0.00000000000000000001608 101.0
BYDH3_k127_6318207_0 Phosphoribosylformylglycinamidine (FGAM) synthase K01952 - 6.3.5.3 0.0 1154.0
BYDH3_k127_6318207_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.328e-274 865.0
BYDH3_k127_6318207_10 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039 456.0
BYDH3_k127_6318207_11 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 454.0
BYDH3_k127_6318207_12 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 456.0
BYDH3_k127_6318207_13 Histidinol dehydrogenase K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006483 428.0
BYDH3_k127_6318207_14 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009595 423.0
BYDH3_k127_6318207_15 PFAM peptidase M16 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004295 372.0
BYDH3_k127_6318207_16 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 372.0
BYDH3_k127_6318207_17 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 362.0
BYDH3_k127_6318207_18 PFAM acyl-CoA dehydrogenase domain protein K00253 - 1.3.8.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 361.0
BYDH3_k127_6318207_19 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005917 349.0
BYDH3_k127_6318207_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.751e-265 840.0
BYDH3_k127_6318207_20 TIGRFAM RarD protein, DMT superfamily transporter K05786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 340.0
BYDH3_k127_6318207_21 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009171 335.0
BYDH3_k127_6318207_22 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 329.0
BYDH3_k127_6318207_23 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 296.0
BYDH3_k127_6318207_24 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000009444 267.0
BYDH3_k127_6318207_25 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000001884 257.0
BYDH3_k127_6318207_26 TIGRFAM hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000001076 241.0
BYDH3_k127_6318207_27 Peptidase S24-like K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000002919 241.0
BYDH3_k127_6318207_28 Inositol monophosphatase K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000004698 237.0
BYDH3_k127_6318207_29 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000289 232.0
BYDH3_k127_6318207_3 polyribonucleotide nucleotidyltransferase activity K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 1.488e-219 701.0
BYDH3_k127_6318207_30 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000006861 231.0
BYDH3_k127_6318207_31 regulation of RNA biosynthetic process K03567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000001444 200.0
BYDH3_k127_6318207_32 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493,K07320 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009007,GO:0009008,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0032775,GO:0034641,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044728,GO:0046483,GO:0071704,GO:0090304,GO:0140096,GO:0140097,GO:1901360,GO:1901564 2.1.1.297,2.1.1.298 0.0000000000000000000000000000000000000000000000000000003975 204.0
BYDH3_k127_6318207_33 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K04562 - - 0.0000000000000000000000000000000000000000000000000000006485 205.0
BYDH3_k127_6318207_34 saccharopine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000003645 196.0
BYDH3_k127_6318207_35 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000005609 195.0
BYDH3_k127_6318207_36 PFAM Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000002423 183.0
BYDH3_k127_6318207_37 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.0000000000000000000000000000000000000000000001326 176.0
BYDH3_k127_6318207_38 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000007058 180.0
BYDH3_k127_6318207_39 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000008211 176.0
BYDH3_k127_6318207_4 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 5.084e-199 650.0
BYDH3_k127_6318207_40 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000002286 158.0
BYDH3_k127_6318207_41 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000005829 164.0
BYDH3_k127_6318207_42 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000001174 160.0
BYDH3_k127_6318207_43 SMART Metal-dependent phosphohydrolase, HD region - - - 0.000000000000000000000000000000003851 145.0
BYDH3_k127_6318207_44 YGGT family K02221 - - 0.00000000000000000000000000000005035 127.0
BYDH3_k127_6318207_45 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000001146 127.0
BYDH3_k127_6318207_46 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000003132 119.0
BYDH3_k127_6318207_47 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.0000000000000000000000000004458 116.0
BYDH3_k127_6318207_48 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.0000000000000000000000000007527 118.0
BYDH3_k127_6318207_49 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000001658 116.0
BYDH3_k127_6318207_5 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 8.613e-199 626.0
BYDH3_k127_6318207_50 TRAP transporter T-component - - - 0.0000000000000000000000003154 117.0
BYDH3_k127_6318207_51 50S ribosomal protein L31 K02909 - - 0.0000000000000000000000004866 105.0
BYDH3_k127_6318207_52 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000002013 107.0
BYDH3_k127_6318207_53 Protein of unknown function (DUF503) K09764 - - 0.00000000000000000003915 93.0
BYDH3_k127_6318207_54 Belongs to the UPF0235 family K09131 - - 0.000000000000000002269 89.0
BYDH3_k127_6318207_55 Protein of unknown function (DUF448) K07742 - - 0.000000006913 64.0
BYDH3_k127_6318207_56 TIGRFAM DivIVA domain K04074 - - 0.0000003469 58.0
BYDH3_k127_6318207_6 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 508.0
BYDH3_k127_6318207_7 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007829 503.0
BYDH3_k127_6318207_8 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 466.0
BYDH3_k127_6318207_9 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 460.0
BYDH3_k127_6323438_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 486.0
BYDH3_k127_6323438_1 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 376.0
BYDH3_k127_6323438_2 Dehydrogenase E1 component K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 360.0
BYDH3_k127_6323438_3 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009707 303.0
BYDH3_k127_6323438_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000001336 236.0
BYDH3_k127_6323438_5 manganese ion transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000003974 204.0
BYDH3_k127_6323438_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000000001467 149.0
BYDH3_k127_6323579_0 Collagenase K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 352.0
BYDH3_k127_6336253_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 564.0
BYDH3_k127_6336253_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.000000000000000000003122 96.0
BYDH3_k127_6352011_0 Iron-containing alcohol dehydrogenase K00001,K04072 - 1.1.1.1,1.2.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 342.0
BYDH3_k127_6352011_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000276 214.0
BYDH3_k127_6352011_2 citrate synthase K01647 - 2.3.3.1 0.0000000000000000000000006024 106.0
BYDH3_k127_6367893_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K09251 - 2.6.1.82 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 546.0
BYDH3_k127_6367893_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 505.0
BYDH3_k127_6367893_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K09251 - 2.6.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 425.0
BYDH3_k127_6367893_3 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 306.0
BYDH3_k127_6367893_4 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000002366 165.0
BYDH3_k127_6427704_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002634 482.0
BYDH3_k127_6427704_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006345 475.0
BYDH3_k127_6427704_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000003406 233.0
BYDH3_k127_6445233_0 Valyl tRNA synthetase tRNA binding arm K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1104.0
BYDH3_k127_6445233_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 5.77e-213 675.0
BYDH3_k127_6445233_10 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.0000000000000000000000000002755 124.0
BYDH3_k127_6445233_11 - - - - 0.000000000000000000000001309 105.0
BYDH3_k127_6445233_12 YdjC-like protein K02759,K03478 - 2.7.1.196,2.7.1.205,3.5.1.105 0.0000000000000000000009013 105.0
BYDH3_k127_6445233_13 - - - - 0.000000000000000005527 87.0
BYDH3_k127_6445233_15 DNA excision - - - 0.000000006944 59.0
BYDH3_k127_6445233_16 - - - - 0.00008661 49.0
BYDH3_k127_6445233_2 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 511.0
BYDH3_k127_6445233_3 Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP- dependent clade X sub-subfamily K00850 - 2.7.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 508.0
BYDH3_k127_6445233_4 Type II secretion system K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 482.0
BYDH3_k127_6445233_5 Phage integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009282 421.0
BYDH3_k127_6445233_6 Protein of unknown function (DUF3987) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004959 402.0
BYDH3_k127_6445233_7 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006976 366.0
BYDH3_k127_6445233_8 pyridine nucleotide-disulphide oxidoreductase dimerisation K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 329.0
BYDH3_k127_6445233_9 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000009045 144.0
BYDH3_k127_6501580_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 457.0
BYDH3_k127_6501580_1 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000206 269.0
BYDH3_k127_6501580_2 methyltransferase - - - 0.0000000000000000000000000000000000000000004881 166.0
BYDH3_k127_6501580_3 PFAM regulatory protein ArsR K03892 - - 0.000000000000000008232 87.0
BYDH3_k127_6600757_0 Thiamine pyrophosphate enzyme, central K01652 - 2.2.1.6 2.429e-238 751.0
BYDH3_k127_6600757_1 ABC-type uncharacterized transport system - - - 4.653e-217 696.0
BYDH3_k127_6600757_10 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 309.0
BYDH3_k127_6600757_11 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 308.0
BYDH3_k127_6600757_12 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000001832 240.0
BYDH3_k127_6600757_13 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000004749 243.0
BYDH3_k127_6600757_14 Cobalt transport protein K16785 - - 0.0000000000000000000000000000000000000000000000000000000008518 211.0
BYDH3_k127_6600757_15 TIGRFAM acetolactate synthase, small subunit K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000009005 208.0
BYDH3_k127_6600757_16 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000001569 207.0
BYDH3_k127_6600757_17 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000004036 185.0
BYDH3_k127_6600757_18 PFAM Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000002726 174.0
BYDH3_k127_6600757_19 Sel1-like repeats. K07126 - - 0.0000000000000000000000000000000000000000000007216 175.0
BYDH3_k127_6600757_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 2.112e-195 623.0
BYDH3_k127_6600757_20 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000000005025 172.0
BYDH3_k127_6600757_21 oxidoreductase FAD NAD(P)-binding - - - 0.000000000000000000000000000000000000002052 151.0
BYDH3_k127_6600757_22 - - - - 0.000000000000000004894 91.0
BYDH3_k127_6600757_23 Cytochrome b5 - - - 0.0000000000000003392 84.0
BYDH3_k127_6600757_24 Rubrerythrin - - - 0.00000000000001188 81.0
BYDH3_k127_6600757_25 Protein of unknown function (DUF465) K09794 - - 0.0000000000002841 74.0
BYDH3_k127_6600757_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006335 577.0
BYDH3_k127_6600757_4 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052,K07246 - 1.1.1.83,1.1.1.85,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 520.0
BYDH3_k127_6600757_5 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 502.0
BYDH3_k127_6600757_6 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 488.0
BYDH3_k127_6600757_7 PFAM ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 382.0
BYDH3_k127_6600757_8 PFAM EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 381.0
BYDH3_k127_6600757_9 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 337.0
BYDH3_k127_6612562_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 488.0
BYDH3_k127_6612562_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001486 260.0
BYDH3_k127_6612562_2 coenzyme F420 binding K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000001603 168.0
BYDH3_k127_6626440_0 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006134 425.0
BYDH3_k127_6626440_1 YhhN family - - - 0.000000000000000003408 93.0
BYDH3_k127_6645867_0 NeuB family K03856,K04516 - 2.5.1.54,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 434.0
BYDH3_k127_6645867_1 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004619 259.0
BYDH3_k127_6645867_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000007218 187.0
BYDH3_k127_6645867_3 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000226 141.0
BYDH3_k127_6645867_4 Regulatory protein, FmdB family - - - 0.000000000000000000002005 96.0
BYDH3_k127_6645867_5 Outer membrane protein beta-barrel family K16089 - - 0.00000000000003349 84.0
BYDH3_k127_6645867_6 - - - - 0.00000000206 66.0
BYDH3_k127_6661206_0 aconitate hydratase K01681 - 4.2.1.3 1.823e-266 834.0
BYDH3_k127_6661206_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007308 585.0
BYDH3_k127_6661206_2 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000081 278.0
BYDH3_k127_6661206_3 ECF-type riboflavin transporter, S component - - - 0.000000000000000000000000000000000000000409 155.0
BYDH3_k127_6661206_4 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 0.000000000000002559 85.0
BYDH3_k127_6661206_5 twitching motility protein K02669 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00003793 54.0
BYDH3_k127_667315_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 597.0
BYDH3_k127_667315_1 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 470.0
BYDH3_k127_667315_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 473.0
BYDH3_k127_667315_3 type IV pilus assembly PilZ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 364.0
BYDH3_k127_667315_4 auxin-activated signaling pathway K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 304.0
BYDH3_k127_667315_5 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006661 266.0
BYDH3_k127_667315_6 Binds zinc. Could be an important component of the zinc- balancing mechanism K07803 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0008270,GO:0016151,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0050897 - 0.00001449 54.0
BYDH3_k127_6701498_0 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 1.209e-267 830.0
BYDH3_k127_6701498_1 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 0.000000000000000000000000000000000000004298 147.0
BYDH3_k127_6701498_2 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 0.0000000000000000000000000005488 113.0
BYDH3_k127_6721820_0 PFAM formate C-acetyltransferase glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.0 1281.0
BYDH3_k127_6721820_1 formate C-acetyltransferase glycine radical - - - 0.0 1204.0
BYDH3_k127_6721820_2 Bacterial protein of unknown function (DUF853) K06915 - - 2.153e-224 713.0
BYDH3_k127_6721820_3 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 528.0
BYDH3_k127_6721820_4 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009066 410.0
BYDH3_k127_6721820_5 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 363.0
BYDH3_k127_6721820_6 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 287.0
BYDH3_k127_6721820_7 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001907 261.0
BYDH3_k127_6721820_8 WHG domain - - - 0.000000000000000000000000000000000000000000000000000000009066 205.0
BYDH3_k127_6721820_9 Transcriptional regulator, GntR family K05799 - - 0.000000000000000000000000000000009666 138.0
BYDH3_k127_675906_0 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 3.02e-212 673.0
BYDH3_k127_675906_1 phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 441.0
BYDH3_k127_675906_2 Signal transduction histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 314.0
BYDH3_k127_675906_3 PFAM response regulator receiver K07657,K07663 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004658 281.0
BYDH3_k127_675906_4 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.0000000000000000000000000000000000000000000000000000000000000001275 238.0
BYDH3_k127_675906_5 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000007909 221.0
BYDH3_k127_675906_6 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000001241 186.0
BYDH3_k127_675906_7 Protein of unknown function DUF47 K02039,K07220 - - 0.0000000000000000000000000000000000000001428 157.0
BYDH3_k127_675906_8 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.0000000000000000000000000003517 123.0
BYDH3_k127_675906_9 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.000000000000000000006638 92.0
BYDH3_k127_6786972_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 516.0
BYDH3_k127_6786972_1 ATP synthase K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000327 280.0
BYDH3_k127_6786972_2 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000008512 207.0
BYDH3_k127_6786972_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000001021 76.0
BYDH3_k127_6874977_0 type III restriction protein res subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 401.0
BYDH3_k127_6874977_1 MMPL family K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 387.0
BYDH3_k127_6874977_2 amino acid ABC transporter K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004466 277.0
BYDH3_k127_6874977_3 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000002964 231.0
BYDH3_k127_6874977_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000000000000000000000911 228.0
BYDH3_k127_6874977_5 Nucleoside recognition - - - 0.00000000000000000000000000000000000000001454 166.0
BYDH3_k127_688782_0 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 315.0
BYDH3_k127_688782_1 Cold shock protein K03704 - - 0.0000000000000000000000003091 107.0
BYDH3_k127_6916937_0 PFAM Alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009998 464.0
BYDH3_k127_6916937_1 PFAM thiamine pyrophosphate protein domain protein TPP-binding K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 415.0
BYDH3_k127_6916937_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.000000002647 64.0
BYDH3_k127_6917103_0 CoA binding domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004926 422.0
BYDH3_k127_6917103_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000006504 188.0
BYDH3_k127_6917103_2 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000001968 129.0
BYDH3_k127_6917103_3 Ribosomal L27 protein K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000001242 126.0
BYDH3_k127_6917103_4 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000008457 73.0
BYDH3_k127_6961639_0 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 402.0
BYDH3_k127_6961639_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 393.0
BYDH3_k127_6961639_2 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000832 374.0
BYDH3_k127_6961639_3 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 362.0
BYDH3_k127_6961639_4 PFAM Radical SAM domain protein K07139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 324.0
BYDH3_k127_6961639_5 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 302.0
BYDH3_k127_6961639_6 Belongs to the bacterial solute-binding protein 3 family K02030 - - 0.0000000000000000000000000000000000000000000000000000000000004452 220.0
BYDH3_k127_6961639_7 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000002712 180.0
BYDH3_k127_6961639_8 Peptidase family C69 - - - 0.00000000000000000000000000000000003603 141.0
BYDH3_k127_6964868_0 CBS domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 297.0
BYDH3_k127_6964868_1 DNA helicase K03657 - 3.6.4.12 0.0000000000002573 75.0
BYDH3_k127_6982640_0 DNA-directed DNA polymerase activity K02337 - 2.7.7.7 0.0 1036.0
BYDH3_k127_6982640_1 PFAM NADH flavin oxidoreductase NADH oxidase - - - 6.557e-241 761.0
BYDH3_k127_6982640_10 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005366 320.0
BYDH3_k127_6982640_11 PFAM Radical SAM K04070 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006312 299.0
BYDH3_k127_6982640_12 Ion channel K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 302.0
BYDH3_k127_6982640_13 Histone deacetylase domain K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 303.0
BYDH3_k127_6982640_14 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000105 296.0
BYDH3_k127_6982640_15 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008647 286.0
BYDH3_k127_6982640_16 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000002149 269.0
BYDH3_k127_6982640_17 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000003858 261.0
BYDH3_k127_6982640_18 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000009765 229.0
BYDH3_k127_6982640_19 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000002543 205.0
BYDH3_k127_6982640_2 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 1.559e-214 687.0
BYDH3_k127_6982640_20 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.0000000000000000000000000000000000000000000000001509 187.0
BYDH3_k127_6982640_21 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000001838 182.0
BYDH3_k127_6982640_22 Endoribonuclease L-PSP K09022 GO:0003674,GO:0003824,GO:0016787,GO:0019239 3.5.99.10 0.00000000000000000000000000000000000000026 153.0
BYDH3_k127_6982640_23 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000000000000002791 136.0
BYDH3_k127_6982640_24 Methyltransferase domain - - - 0.0000000000000000000000000000002801 136.0
BYDH3_k127_6982640_25 Could be involved in septation K06412 - - 0.00000000000000000000000000004154 118.0
BYDH3_k127_6982640_26 LysM domain - - - 0.000000000000000000000005569 113.0
BYDH3_k127_6982640_27 Two component, sigma54 specific, transcriptional regulator, Fis family K07713,K07714,K19641 - - 0.000000000000000000000005894 109.0
BYDH3_k127_6982640_28 TIGRFAM methyltransferase FkbM family - - - 0.00000000000000000005276 100.0
BYDH3_k127_6982640_29 - - - - 0.00000000000000000551 89.0
BYDH3_k127_6982640_3 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 9.492e-213 670.0
BYDH3_k127_6982640_30 Lipopolysaccharide kinase (Kdo/WaaP) family - - - 0.000000000000000005517 96.0
BYDH3_k127_6982640_31 Domain of unknown function (DUF1844) - - - 0.0000000000000001839 84.0
BYDH3_k127_6982640_32 Glycosyl transferases group 1 - - - 0.00000000000006631 82.0
BYDH3_k127_6982640_33 Protein of unknown function (DUF3426) - - - 0.000000002374 68.0
BYDH3_k127_6982640_35 Lipopolysaccharide kinase (Kdo/WaaP) family - - - 0.0000283 51.0
BYDH3_k127_6982640_4 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 574.0
BYDH3_k127_6982640_5 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 511.0
BYDH3_k127_6982640_6 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 431.0
BYDH3_k127_6982640_7 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 398.0
BYDH3_k127_6982640_8 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 344.0
BYDH3_k127_6982640_9 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 313.0
BYDH3_k127_7022155_1 Uncharacterised conserved protein (DUF2156) K01163 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003683 335.0
BYDH3_k127_7022155_2 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 314.0
BYDH3_k127_7022155_3 PFAM membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002637 269.0
BYDH3_k127_7022155_4 transcriptional regulator - - - 0.000000000000000000000000000000000000000002135 162.0
BYDH3_k127_7022155_5 Calcineurin-like phosphoesterase K07098 - - 0.000000000000000000000000000000000007505 138.0
BYDH3_k127_7022155_6 - - - - 0.000000000000000000000000000000744 127.0
BYDH3_k127_7022155_7 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000628 68.0
BYDH3_k127_7026711_0 acyl-coa dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 550.0
BYDH3_k127_7026711_1 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008083 553.0
BYDH3_k127_7026711_10 polar amino acid ABC transporter, inner membrane subunit K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000661 323.0
BYDH3_k127_7026711_11 PFAM Mg2 transporter protein CorA family protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 323.0
BYDH3_k127_7026711_12 Binding-protein-dependent transport system inner membrane component K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 311.0
BYDH3_k127_7026711_13 ACT domain K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000004979 267.0
BYDH3_k127_7026711_14 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000000000000000000000000007125 218.0
BYDH3_k127_7026711_15 extracellular solute-binding protein, family 3 K02030 - - 0.00000000000000000000000000000000000000000000002514 171.0
BYDH3_k127_7026711_16 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000001246 158.0
BYDH3_k127_7026711_17 NmrA-like family - - - 0.00000000000000000000000000000002433 138.0
BYDH3_k127_7026711_18 - - - - 0.0000000000000003341 85.0
BYDH3_k127_7026711_19 SCP-2 sterol transfer family - - - 0.000000000002762 72.0
BYDH3_k127_7026711_2 Glycine radical K00656,K20038 - 2.3.1.54,4.3.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 567.0
BYDH3_k127_7026711_3 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 532.0
BYDH3_k127_7026711_4 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006953 503.0
BYDH3_k127_7026711_5 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004278 440.0
BYDH3_k127_7026711_6 TOBE domain K02052,K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007175 436.0
BYDH3_k127_7026711_7 PFAM Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 424.0
BYDH3_k127_7026711_8 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 347.0
BYDH3_k127_7026711_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 332.0
BYDH3_k127_7058915_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 449.0
BYDH3_k127_7058915_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 328.0
BYDH3_k127_7058915_2 PFAM response regulator receiver K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004699 311.0
BYDH3_k127_7058915_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07644 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 311.0
BYDH3_k127_7058915_4 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000007761 142.0
BYDH3_k127_7058915_5 Phosphopantetheine attachment site - - - 0.000000000000001155 79.0
BYDH3_k127_7058915_6 Methyltransferase domain - - - 0.0000009266 59.0
BYDH3_k127_7071785_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488 405.0
BYDH3_k127_7071785_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000007257 265.0
BYDH3_k127_7071785_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000002506 203.0
BYDH3_k127_7071785_3 Prephenate dehydrogenase K00210,K04517 - 1.3.1.12 0.000000000000000000000000000000000000000000000000001773 196.0
BYDH3_k127_708035_0 GMC oxidoreductase K03333 - 1.1.3.6 1.176e-196 627.0
BYDH3_k127_708035_1 tRNA synthetases class I (K) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 318.0
BYDH3_k127_708035_10 Inverse autotransporter, beta-domain K13735 - - 0.0000001769 61.0
BYDH3_k127_708035_11 - - - - 0.0003189 45.0
BYDH3_k127_708035_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000331 252.0
BYDH3_k127_708035_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000002259 241.0
BYDH3_k127_708035_4 galactose-1-phosphate uridylyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001644 245.0
BYDH3_k127_708035_5 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000000000000000000000000000001653 130.0
BYDH3_k127_708035_6 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000009318 134.0
BYDH3_k127_708035_7 chemotaxis signal transduction protein K03408 - - 0.000000000000000000000000001455 129.0
BYDH3_k127_708035_8 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.00000000000000000000000005996 124.0
BYDH3_k127_708035_9 PFAM CopG domain protein DNA-binding domain protein K18918 - - 0.0000000000000003211 79.0
BYDH3_k127_7109294_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1070.0
BYDH3_k127_7109294_1 TIGRFAM penicillin-binding protein, 1A family K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 546.0
BYDH3_k127_7109294_10 WD40 repeat, subgroup - - - 0.000000003384 69.0
BYDH3_k127_7109294_2 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003935 404.0
BYDH3_k127_7109294_3 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 350.0
BYDH3_k127_7109294_4 cellulose binding - - - 0.00000000000000000000000000000000000000000000000141 190.0
BYDH3_k127_7109294_5 Lytic transglycosylase catalytic K08307 - - 0.000000000000000000000000009413 117.0
BYDH3_k127_7109294_6 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000001454 109.0
BYDH3_k127_7109294_7 LysM domain - - - 0.000000000000003743 89.0
BYDH3_k127_7109294_8 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000002571 70.0
BYDH3_k127_7109294_9 - - - - 0.000000000004641 72.0
BYDH3_k127_711463_0 Bacterial DNA topoisomeraes I ATP-binding domain K03168 - 5.99.1.2 1.205e-229 735.0
BYDH3_k127_711463_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 1.338e-208 664.0
BYDH3_k127_711463_10 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000002069 203.0
BYDH3_k127_711463_11 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000005054 189.0
BYDH3_k127_711463_12 Uroporphyrinogen decarboxylase (URO-D) - - - 0.000000000000000000000000000000000000602 153.0
BYDH3_k127_711463_13 Universal stress protein family - - - 0.000000000000000000000000000000009333 132.0
BYDH3_k127_711463_14 PFAM Cold-shock protein DNA-binding K03704 - - 0.000000000000000000000000006594 110.0
BYDH3_k127_711463_15 Regulatory protein, FmdB family - - - 0.00000000003123 66.0
BYDH3_k127_711463_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 569.0
BYDH3_k127_711463_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 482.0
BYDH3_k127_711463_4 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 472.0
BYDH3_k127_711463_5 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 445.0
BYDH3_k127_711463_6 Peptidase family M20/M25/M40 K01270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 421.0
BYDH3_k127_711463_7 TIGRFAM DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002847 272.0
BYDH3_k127_711463_8 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000002271 240.0
BYDH3_k127_711463_9 beta-lactamase activity K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000001428 241.0
BYDH3_k127_7122951_0 PFAM CoA-binding domain protein - - - 8.114e-273 856.0
BYDH3_k127_7122951_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000003269 233.0
BYDH3_k127_7182904_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 407.0
BYDH3_k127_7182904_1 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000000000000000000000000000000000000000004251 228.0
BYDH3_k127_7233930_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003244 551.0
BYDH3_k127_7233930_1 PFAM Acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008637 428.0
BYDH3_k127_7233930_2 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000007639 162.0
BYDH3_k127_7244544_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 9.351e-240 757.0
BYDH3_k127_7244544_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 586.0
BYDH3_k127_7244544_10 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000001207 173.0
BYDH3_k127_7244544_11 cheY-homologous receiver domain - - - 0.0000000000000000000000000004197 117.0
BYDH3_k127_7244544_12 - - - - 0.0000000000001124 77.0
BYDH3_k127_7244544_13 biopolymer transport protein K03559 - - 0.000000000002058 74.0
BYDH3_k127_7244544_14 Serine aminopeptidase, S33 K01048 - 3.1.1.5 0.000001888 50.0
BYDH3_k127_7244544_2 Acyl-CoA dehydrogenase N terminal K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004756 587.0
BYDH3_k127_7244544_3 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008084 469.0
BYDH3_k127_7244544_4 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 359.0
BYDH3_k127_7244544_5 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009706 297.0
BYDH3_k127_7244544_6 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000679 265.0
BYDH3_k127_7244544_7 PFAM PSP1 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001544 253.0
BYDH3_k127_7244544_8 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001768 250.0
BYDH3_k127_7244544_9 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000017 204.0
BYDH3_k127_7319058_0 Lipopolysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001775 276.0
BYDH3_k127_7319058_1 PFAM Peptidoglycan-binding domain 1 protein K02450 - - 0.000000000000000000000000000000000000000000000000000000000000003267 238.0
BYDH3_k127_7319058_2 CobQ/CobB/MinD/ParA nucleotide binding domain K08252 - 2.7.10.1 0.00000000000000000000000000000000000000000001716 171.0
BYDH3_k127_7319058_3 PFAM Phosphoribosyltransferase - - - 0.000000000000001957 81.0
BYDH3_k127_7412358_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582 537.0
BYDH3_k127_7412358_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000905 419.0
BYDH3_k127_7412358_10 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.0000000000000000000000000000000000000000000001001 177.0
BYDH3_k127_7412358_11 SMART Transcription regulator, AsnC-type - - - 0.000000000000000000000000000000000000000002166 159.0
BYDH3_k127_7412358_12 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000000000004858 169.0
BYDH3_k127_7412358_13 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.0000000000000000000000000000000000000004194 159.0
BYDH3_k127_7412358_14 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000001987 162.0
BYDH3_k127_7412358_15 metal-dependent phosphohydrolase HD - - - 0.000000000000000000000000000003029 128.0
BYDH3_k127_7412358_16 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000006226 120.0
BYDH3_k127_7412358_17 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000001316 114.0
BYDH3_k127_7412358_18 - - - - 0.0000000000000001584 87.0
BYDH3_k127_7412358_19 - - - - 0.0000000000005343 76.0
BYDH3_k127_7412358_2 SMART Elongator protein 3 MiaB NifB K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 324.0
BYDH3_k127_7412358_20 phosphorelay signal transduction system - - - 0.00000001436 65.0
BYDH3_k127_7412358_3 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007402 314.0
BYDH3_k127_7412358_4 PFAM Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003325 285.0
BYDH3_k127_7412358_5 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000136 246.0
BYDH3_k127_7412358_6 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000003346 232.0
BYDH3_k127_7412358_7 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000001406 218.0
BYDH3_k127_7412358_8 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000393 211.0
BYDH3_k127_7412358_9 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000003981 201.0
BYDH3_k127_7436803_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769 2.6.1.83 7.044e-201 631.0
BYDH3_k127_7436803_1 Conserved carboxylase domain K01571,K01960,K03416 - 2.1.3.1,4.1.1.3,6.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007441 498.0
BYDH3_k127_7436803_2 Cys Met metabolism pyridoxal-phosphate-dependent protein K01739,K01760 - 2.5.1.48,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 463.0
BYDH3_k127_7436803_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008852 466.0
BYDH3_k127_7436803_4 TIGRFAM hydrogenase accessory protein HypB K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 318.0
BYDH3_k127_7436803_5 Metal dependent phosphohydrolases with conserved 'HD' motif. K06950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000195 260.0
BYDH3_k127_7436803_6 long-chain fatty acid transporting porin activity K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000023 256.0
BYDH3_k127_7436803_7 Hydrogenase/urease nickel incorporation, metallochaperone, hypA - - - 0.000000000000000000000000009169 119.0
BYDH3_k127_7436803_8 Proposed nucleic acid binding domain - - - 0.000007018 51.0
BYDH3_k127_7513927_0 endonuclease III K07457 - - 0.00000000000000000000000000000000000000000000000000000000000000482 223.0
BYDH3_k127_7513927_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000001484 159.0
BYDH3_k127_7513927_2 PFAM Enoyl-CoA hydratase isomerase K15866 - 5.3.3.18 0.000004904 51.0
BYDH3_k127_7550668_0 PFAM multi antimicrobial extrusion protein MatE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 476.0
BYDH3_k127_7550668_1 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008625 308.0
BYDH3_k127_7550668_2 ADP-ribosylglycohydrolase - - - 0.000000000000000000000000000000000000000001036 161.0
BYDH3_k127_7550668_3 RF-1 domain K15034 - - 0.000000000000000000001802 95.0
BYDH3_k127_7561941_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000001135 218.0
BYDH3_k127_7561941_1 PFAM HhH-GPD superfamily base excision DNA repair protein K03575 - - 0.000000000000000000000000000000000000000000003005 167.0
BYDH3_k127_7561941_2 CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.0000000000000000000000000002346 119.0
BYDH3_k127_75715_0 LeuA allosteric (dimerisation) domain K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 609.0
BYDH3_k127_75715_1 PFAM aspartate glutamate uridylate kinase K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005376 512.0
BYDH3_k127_75715_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001362 269.0
BYDH3_k127_75715_3 tRNA threonylcarbamoyladenosine modification K06925,K07102 - 2.7.1.221 0.0000000000000000000000002294 114.0
BYDH3_k127_75715_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000007823 108.0
BYDH3_k127_75715_5 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000422 83.0
BYDH3_k127_75715_7 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000004436 49.0
BYDH3_k127_7589391_0 molybdopterin oxidoreductase Fe4S4 region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 408.0
BYDH3_k127_7589391_1 Ferrous iron transport protein B - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003776 391.0
BYDH3_k127_7589391_2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00123,K05299 - 1.17.1.10,1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000004484 256.0
BYDH3_k127_7634393_0 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 399.0
BYDH3_k127_7634393_1 DHH family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007964 287.0
BYDH3_k127_7634393_2 PFAM Fibronectin, type III domain - - - 0.0000000000000000000000000000000000000000000000000008758 192.0
BYDH3_k127_7667466_0 Acetyl-CoA hydrolase transferase N-terminal domain - - - 8.111e-267 833.0
BYDH3_k127_7667466_1 Inorganic H+ pyrophosphatase K15987 - 3.6.1.1 6.088e-229 715.0
BYDH3_k127_7667466_2 PFAM ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 565.0
BYDH3_k127_7667466_3 PFAM ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000007795 222.0
BYDH3_k127_7667466_4 GMP synthase C terminal domain K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000003508 171.0
BYDH3_k127_7667466_5 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316,K17680 - 3.6.4.12 0.000000000000000000000000001574 124.0
BYDH3_k127_7667466_6 COG0644 Dehydrogenases (flavoproteins) K00311 - 1.5.5.1 0.000002336 59.0
BYDH3_k127_7733343_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 481.0
BYDH3_k127_7733343_1 B12 binding domain K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000001863 227.0
BYDH3_k127_7733343_2 B12 binding domain K00548 - 2.1.1.13 0.000000000000000002655 86.0
BYDH3_k127_7733343_3 Domain of unknown function (DUF4445) - - - 0.000000001551 61.0
BYDH3_k127_7748666_0 PFAM 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007837 372.0
BYDH3_k127_7748666_1 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 293.0
BYDH3_k127_7748666_2 AhpC/TSA family K03386 - 1.11.1.15 0.000000000000000004515 83.0
BYDH3_k127_781672_0 TIGRFAM SagB-type dehydrogenase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002456 243.0
BYDH3_k127_781672_1 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000003595 103.0
BYDH3_k127_781672_2 Trp repressor protein - - - 0.00000000000000000000002816 105.0
BYDH3_k127_781672_3 PAS domain - - - 0.0005146 47.0
BYDH3_k127_7867431_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 4.278e-206 648.0
BYDH3_k127_7867431_1 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000009754 89.0
BYDH3_k127_7899763_0 PFAM Basic membrane K02058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007813 584.0
BYDH3_k127_7899763_1 Domain of unknown function (DUF3413) K07014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 565.0
BYDH3_k127_7899763_2 ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 540.0
BYDH3_k127_7899763_3 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 394.0
BYDH3_k127_7899763_4 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 392.0
BYDH3_k127_7899763_5 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 396.0
BYDH3_k127_7899763_6 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000003464 195.0
BYDH3_k127_7899763_7 PFAM Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000001014 189.0
BYDH3_k127_7899763_8 Universal stress protein family - - - 0.000000000000000000000000000004454 126.0
BYDH3_k127_7899763_9 Branched-chain amino acid transport system / permease component K02057 - - 0.0000000000000000005606 88.0
BYDH3_k127_791058_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 554.0
BYDH3_k127_791058_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 371.0
BYDH3_k127_791058_10 Ribosomal protein L36 K02919 - - 0.00000000001261 65.0
BYDH3_k127_791058_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 295.0
BYDH3_k127_791058_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009277 267.0
BYDH3_k127_791058_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000002979 186.0
BYDH3_k127_791058_5 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000003427 172.0
BYDH3_k127_791058_6 ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16786,K16787 - - 0.00000000000000000000000000000000000000000003844 169.0
BYDH3_k127_791058_7 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000125 141.0
BYDH3_k127_791058_8 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000001141 132.0
BYDH3_k127_791058_9 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.0000000000000000000000000000004484 123.0
BYDH3_k127_7911244_0 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 324.0
BYDH3_k127_7911244_1 Phage late control gene D protein (GPD) K11904 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004693 244.0
BYDH3_k127_7911244_2 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000004395 214.0
BYDH3_k127_7956251_0 C4-type zinc ribbon domain K07164 - - 0.000000000000000000000000002204 124.0
BYDH3_k127_7956251_1 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.0000000000000000000004136 98.0
BYDH3_k127_7956251_2 Prokaryotic N-terminal methylation motif K02650 - - 0.000000000006167 70.0
BYDH3_k127_8098828_0 Transcriptional regulator K03717 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 370.0
BYDH3_k127_8098828_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007344 334.0
BYDH3_k127_8098828_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 309.0
BYDH3_k127_8098828_3 MaoC like domain - - - 0.00000000000000000000000000000000000000000000000000000000000003492 218.0
BYDH3_k127_8098828_4 aminopeptidase N - - - 0.0000000000000000000000000000000000000000000000004559 187.0
BYDH3_k127_8098828_5 ankyrin 3, node of Ranvier (ankyrin G) K10277,K10380 GO:0000226,GO:0000278,GO:0000281,GO:0000323,GO:0000902,GO:0000904,GO:0000910,GO:0001508,GO:0002027,GO:0002028,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003254,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005783,GO:0005794,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006888,GO:0006892,GO:0006893,GO:0006928,GO:0006935,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007016,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007267,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007507,GO:0007528,GO:0007600,GO:0007605,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0008015,GO:0008016,GO:0008092,GO:0008104,GO:0008150,GO:0008582,GO:0009605,GO:0009653,GO:0009893,GO:0009986,GO:0009987,GO:0010035,GO:0010038,GO:0010171,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010649,GO:0010650,GO:0010765,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0010960,GO:0012505,GO:0014069,GO:0014704,GO:0014731,GO:0015031,GO:0015459,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0016247,GO:0016323,GO:0016328,GO:0016528,GO:0016529,GO:0019222,GO:0019226,GO:0019228,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022008,GO:0022402,GO:0022407,GO:0022409,GO:0022607,GO:0022898,GO:0023051,GO:0023052,GO:0023057,GO:0030001,GO:0030003,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030030,GO:0030048,GO:0030054,GO:0030154,GO:0030155,GO:0030182,GO:0030315,GO:0030424,GO:0030425,GO:0030507,GO:0030674,GO:0031175,GO:0031224,GO:0031226,GO:0031430,GO:0031594,GO:0031647,GO:0031672,GO:0031674,GO:0032026,GO:0032279,GO:0032386,GO:0032388,GO:0032409,GO:0032410,GO:0032411,GO:0032412,GO:0032413,GO:0032414,GO:0032501,GO:0032502,GO:0032507,GO:0032879,GO:0032880,GO:0032970,GO:0032989,GO:0032990,GO:0033036,GO:0033157,GO:0033267,GO:0033268,GO:0033270,GO:0033292,GO:0033365,GO:0033563,GO:0034110,GO:0034112,GO:0034394,GO:0034613,GO:0034762,GO:0034763,GO:0034764,GO:0034765,GO:0034766,GO:0034767,GO:0035556,GO:0035637,GO:0036062,GO:0036309,GO:0036371,GO:0036477,GO:0040007,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0042221,GO:0042330,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042734,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043034,GO:0043194,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043267,GO:0043268,GO:0043269,GO:0043270,GO:0043271,GO:0043292,GO:0043679,GO:0044057,GO:0044085,GO:0044087,GO:0044089,GO:0044091,GO:0044092,GO:0044093,GO:0044291,GO:0044304,GO:0044306,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045170,GO:0045184,GO:0045185,GO:0045202,GO:0045211,GO:0045296,GO:0045760,GO:0045785,GO:0045838,GO:0045887,GO:0045927,GO:0046907,GO:0048193,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048588,GO:0048589,GO:0048638,GO:0048639,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050803,GO:0050804,GO:0050805,GO:0050807,GO:0050808,GO:0050821,GO:0050839,GO:0050877,GO:0050890,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051051,GO:0051094,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051270,GO:0051279,GO:0051282,GO:0051301,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0055001,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060249,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0060560,GO:0061024,GO:0061061,GO:0061337,GO:0061564,GO:0061640,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070050,GO:0070201,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070887,GO:0070972,GO:0071241,GO:0071248,GO:0071286,GO:0071702,GO:0071705,GO:0071709,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086036,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090087,GO:0090150,GO:0090257,GO:0090313,GO:0090314,GO:0090316,GO:0097060,GO:0097447,GO:0097458,GO:0097485,GO:0098590,GO:0098771,GO:0098772,GO:0098793,GO:0098794,GO:0098876,GO:0098900,GO:0098901,GO:0098902,GO:0098904,GO:0098907,GO:0098910,GO:0098984,GO:0099080,GO:0099081,GO:0099106,GO:0099177,GO:0099512,GO:0099572,GO:0099612,GO:0099623,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1900073,GO:1900074,GO:1900825,GO:1900827,GO:1901016,GO:1901017,GO:1901018,GO:1901019,GO:1901021,GO:1901379,GO:1901380,GO:1901381,GO:1902259,GO:1902260,GO:1902305,GO:1902307,GO:1903047,GO:1903115,GO:1903169,GO:1903522,GO:1903533,GO:1903779,GO:1903817,GO:1903827,GO:1903829,GO:1904062,GO:1904063,GO:1904064,GO:1904181,GO:1904396,GO:1904398,GO:1904427,GO:1904951,GO:1905475,GO:1905477,GO:1990138,GO:1990778,GO:2000026,GO:2000649,GO:2000651,GO:2001257,GO:2001258,GO:2001259 1.14.11.27 0.0000000000000000000006861 110.0
BYDH3_k127_8098828_6 GIY-YIG catalytic domain K07461 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.0000000000000000002554 91.0
BYDH3_k127_8098828_7 Transcription factor zinc-finger K09981 - - 0.00000000000000214 82.0
BYDH3_k127_8098828_8 Protein of unknown function (DUF2846) - - - 0.000000008008 64.0
BYDH3_k127_8104196_0 Alpha amylase, catalytic domain - - - 0.0 1120.0
BYDH3_k127_8104196_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 345.0
BYDH3_k127_8104196_10 Transglycosylase SLT domain - - - 0.00003448 53.0
BYDH3_k127_8104196_11 HEAT repeat - - - 0.0001087 55.0
BYDH3_k127_8104196_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 301.0
BYDH3_k127_8104196_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000001645 260.0
BYDH3_k127_8104196_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002551 255.0
BYDH3_k127_8104196_5 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000724 223.0
BYDH3_k127_8104196_6 Protein of unknown function DUF89 K09116 - - 0.000000000000000000000000000000000000000000000000000000000001133 220.0
BYDH3_k127_8104196_7 translation initiation factor activity K03699 - - 0.00000000000000000000000000000000000000003414 163.0
BYDH3_k127_8104196_8 Isochorismatase family - - - 0.0000000000000000000000000000000000000006602 155.0
BYDH3_k127_8104196_9 Glutamine amidotransferase domain K00764 - 2.4.2.14 0.00000000000001092 74.0
BYDH3_k127_8237907_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000034 258.0
BYDH3_k127_8237907_1 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004346 255.0
BYDH3_k127_8237907_2 Domain of unknown function (DUF4442) - - - 0.00000000000000000000000000000000003014 139.0
BYDH3_k127_8287146_0 Domain of Unknown Function (DUF748) - - - 8.929e-211 687.0
BYDH3_k127_8287146_1 - - - - 9.189e-198 632.0
BYDH3_k127_8287146_10 - - - - 0.000000000000000000000153 100.0
BYDH3_k127_8287146_11 - - - - 0.0000000000000000004615 96.0
BYDH3_k127_8287146_12 - - - - 0.0000000000000000005994 89.0
BYDH3_k127_8287146_13 - - - - 0.000000000000000002221 88.0
BYDH3_k127_8287146_2 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 570.0
BYDH3_k127_8287146_3 PFAM tRNA synthetase class II (D K and N) K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 498.0
BYDH3_k127_8287146_4 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 378.0
BYDH3_k127_8287146_5 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 369.0
BYDH3_k127_8287146_6 PHB de-polymerase C-terminus K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 329.0
BYDH3_k127_8287146_7 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003204 251.0
BYDH3_k127_8287146_8 MaoC like domain K17865 - 4.2.1.55 0.0000000000000000000000000000000000000000000000000000000007745 205.0
BYDH3_k127_8287146_9 PHB/PHA accumulation regulator DNA-binding domain - - - 0.00000000000000000000000000000000000000001437 159.0
BYDH3_k127_8409260_0 PFAM Radical SAM - - - 7.023e-224 706.0
BYDH3_k127_8409260_1 Aminotransferase class I and II K00814 - 2.6.1.2 1.015e-216 680.0
BYDH3_k127_8409260_10 Belongs to the UPF0307 family K09889 - - 0.00000000000003858 82.0
BYDH3_k127_8409260_11 - - - - 0.00000000121 64.0
BYDH3_k127_8409260_12 Pyridine nucleotide-disulphide oxidoreductase, dimerisation - - - 0.000006658 50.0
BYDH3_k127_8409260_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327 480.0
BYDH3_k127_8409260_3 Pfam:UPF0118 K03548 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 345.0
BYDH3_k127_8409260_4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 314.0
BYDH3_k127_8409260_5 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 - 1.1.1.27,1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005671 286.0
BYDH3_k127_8409260_6 Aldehyde dehydrogenase family K00130 - 1.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003203 278.0
BYDH3_k127_8409260_7 SCO1/SenC - - - 0.0000000000000000000000000000000000000000000000000000000663 200.0
BYDH3_k127_8409260_8 Chalcone isomerase-like - - - 0.000000000000000000000000000000000000000000000000003961 187.0
BYDH3_k127_8409260_9 Universal stress protein - - - 0.000000000000000000000000001961 116.0
BYDH3_k127_8424942_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 2.446e-263 820.0
BYDH3_k127_8424942_1 PFAM amidohydrolase 2 K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 518.0
BYDH3_k127_8424942_2 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 315.0
BYDH3_k127_8424942_3 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000004182 252.0
BYDH3_k127_8424942_4 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000458 199.0
BYDH3_k127_8519779_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007927 547.0
BYDH3_k127_8519779_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 461.0
BYDH3_k127_8519779_10 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000714 289.0
BYDH3_k127_8519779_11 CoA binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003961 277.0
BYDH3_k127_8519779_12 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000001722 273.0
BYDH3_k127_8519779_13 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000006593 239.0
BYDH3_k127_8519779_14 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000002496 180.0
BYDH3_k127_8519779_15 regulator of chromosome condensation, RCC1 - - - 0.00000000000604 79.0
BYDH3_k127_8519779_16 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.000000005677 66.0
BYDH3_k127_8519779_17 Subtilase family - - - 0.00000007444 66.0
BYDH3_k127_8519779_18 - - - - 0.0000006806 59.0
BYDH3_k127_8519779_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008663 446.0
BYDH3_k127_8519779_3 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007898 437.0
BYDH3_k127_8519779_4 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 402.0
BYDH3_k127_8519779_5 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 388.0
BYDH3_k127_8519779_6 Fungalysin metallopeptidase (M36) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 326.0
BYDH3_k127_8519779_7 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 307.0
BYDH3_k127_8519779_8 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 303.0
BYDH3_k127_8519779_9 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005711 298.0
BYDH3_k127_8551758_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 1.574e-206 661.0
BYDH3_k127_8551758_2 - - - - 0.000000000000000000000000000000000005574 139.0
BYDH3_k127_8551758_3 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000009488 128.0
BYDH3_k127_8551758_4 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000738 114.0
BYDH3_k127_8551758_5 plasmid maintenance K03496 - - 0.00000001205 65.0
BYDH3_k127_8551758_6 Protein of unknown function (DUF3097) - - - 0.0009664 49.0
BYDH3_k127_8598796_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0 1201.0
BYDH3_k127_8598796_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261,K00262 - 1.4.1.3,1.4.1.4 7.98e-265 818.0
BYDH3_k127_8598796_11 Enoyl-(Acyl carrier protein) reductase K04708 - 1.1.1.102 0.000000000007118 67.0
BYDH3_k127_8598796_2 PFAM tRNA synthetases class I (E and Q), catalytic domain K01886 - 6.1.1.18 8.731e-225 704.0
BYDH3_k127_8598796_3 L,D-transpeptidase catalytic domain K16291 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002774 602.0
BYDH3_k127_8598796_4 Histidine kinase K07675,K09684 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006332 465.0
BYDH3_k127_8598796_5 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 412.0
BYDH3_k127_8598796_6 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 313.0
BYDH3_k127_8598796_7 Ribonuclease R winged-helix domain K09720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008419 303.0
BYDH3_k127_8598796_8 Isochorismatase family - - - 0.000000000000000000000000000000008574 140.0
BYDH3_k127_8598796_9 Alanine-zipper, major outer membrane lipoprotein - - - 0.0000000000000000000001016 100.0
BYDH3_k127_8624356_0 Arylsulfatase - - - 1.011e-258 803.0
BYDH3_k127_8624356_1 Iron-sulfur cluster-binding domain K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003434 326.0
BYDH3_k127_8635902_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 2.495e-197 628.0
BYDH3_k127_8635902_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 5.294e-197 629.0
BYDH3_k127_8635902_10 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 327.0
BYDH3_k127_8635902_11 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 311.0
BYDH3_k127_8635902_12 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000167 233.0
BYDH3_k127_8635902_13 PFAM NUDIX hydrolase K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000001027 192.0
BYDH3_k127_8635902_14 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K01083,K06131,K06915 - 3.1.3.8 0.0000000000000002513 85.0
BYDH3_k127_8635902_15 TRL-like protein family - - - 0.00000000000002704 76.0
BYDH3_k127_8635902_2 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 590.0
BYDH3_k127_8635902_3 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 496.0
BYDH3_k127_8635902_4 PFAM Branched-chain amino acid transport system permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 399.0
BYDH3_k127_8635902_5 PFAM Extracellular ligand-binding receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 383.0
BYDH3_k127_8635902_6 PFAM Extracellular ligand-binding receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 378.0
BYDH3_k127_8635902_7 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 341.0
BYDH3_k127_8635902_8 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009115 321.0
BYDH3_k127_8635902_9 PFAM ABC transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 317.0
BYDH3_k127_8638222_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.463e-249 790.0
BYDH3_k127_8638222_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 604.0
BYDH3_k127_8638222_10 Ribosomal protein L11 methyltransferase (PrmA) K15460 - 2.1.1.223 0.00000000000000000000000000000000000000000000000005812 186.0
BYDH3_k127_8638222_11 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000005342 116.0
BYDH3_k127_8638222_12 TIGRFAM preprotein translocase, YajC subunit K03210 - - 0.000000000000000000000000002914 115.0
BYDH3_k127_8638222_13 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.00000000000000000000002494 109.0
BYDH3_k127_8638222_14 cellulase activity K01387 - 3.4.24.3 0.00000000000000000000004029 113.0
BYDH3_k127_8638222_15 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.000000000000000000003043 98.0
BYDH3_k127_8638222_16 Acetyl-CoA hydrolase transferase N-terminal domain - - - 0.0000000000000000099 85.0
BYDH3_k127_8638222_17 dUTPase K01520 - 3.6.1.23 0.0000000000008623 76.0
BYDH3_k127_8638222_18 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.00000000002077 66.0
BYDH3_k127_8638222_19 all-trans-retinol 13,14-reductase activity - - - 0.0000001494 61.0
BYDH3_k127_8638222_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 486.0
BYDH3_k127_8638222_3 Queuine tRNA-ribosyltransferase K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 432.0
BYDH3_k127_8638222_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008246 285.0
BYDH3_k127_8638222_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006073 279.0
BYDH3_k127_8638222_6 Thiamine biosynthesis protein (ThiI) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008375 266.0
BYDH3_k127_8638222_7 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000003034 260.0
BYDH3_k127_8638222_8 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000002835 231.0
BYDH3_k127_8638222_9 PFAM Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.0000000000000000000000000000000000000000000000000000112 194.0
BYDH3_k127_8654415_0 PFAM Pyruvate carboxyltransferase - - - 9.323e-238 752.0
BYDH3_k127_8654415_1 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008283 580.0
BYDH3_k127_8654415_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001571 279.0
BYDH3_k127_8654415_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000004636 112.0
BYDH3_k127_8654415_4 positive regulation of growth rate K02453 - - 0.000000000000000003616 95.0
BYDH3_k127_8654415_5 Protein of unknown function (FYDLN_acid) - - - 0.0000001627 61.0
BYDH3_k127_8798185_0 PFAM ABC transporter K06020 - 3.6.3.25 1.974e-308 951.0
BYDH3_k127_8798185_1 PDZ domain (Also known as DHR or GLGF) K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009861 544.0
BYDH3_k127_8798185_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030234,GO:0043021,GO:0043022,GO:0043023,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0098772 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007737 362.0
BYDH3_k127_8798185_3 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000307 203.0
BYDH3_k127_8811069_0 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 549.0
BYDH3_k127_8811069_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007507 434.0
BYDH3_k127_8811069_2 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000001802 141.0
BYDH3_k127_8893206_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 615.0
BYDH3_k127_8893206_1 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 415.0
BYDH3_k127_8893206_10 Hfq protein K03666 - - 0.0000000000000000227 85.0
BYDH3_k127_8893206_11 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000001447 85.0
BYDH3_k127_8893206_12 - - - - 0.0000003438 62.0
BYDH3_k127_8893206_2 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005061 280.0
BYDH3_k127_8893206_3 PFAM SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000004507 221.0
BYDH3_k127_8893206_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.0000000000000000000000000000000000001885 151.0
BYDH3_k127_8893206_5 Binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000001745 139.0
BYDH3_k127_8893206_6 TRAM domain K03215 - 2.1.1.190 0.000000000000000000000000000133 119.0
BYDH3_k127_8893206_7 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000000000000002855 108.0
BYDH3_k127_8893206_8 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000009092 105.0
BYDH3_k127_8893206_9 Predicted membrane protein (DUF2232) - - - 0.00000000000000000002813 102.0
BYDH3_k127_8911711_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.489e-212 668.0
BYDH3_k127_8911711_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 331.0
BYDH3_k127_8911711_2 NlpC/P60 family - - - 0.000000000000000000000000000000000000000000000000000013 193.0
BYDH3_k127_8911711_3 epsilon subunit K02114 - - 0.000000000000000000000000000000000000002592 150.0
BYDH3_k127_8911711_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000000000000000001499 135.0
BYDH3_k127_8911711_5 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.000000000000000000000000000008748 121.0
BYDH3_k127_8911711_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000003475 90.0
BYDH3_k127_8911711_7 N-ATPase, AtpR subunit - - - 0.000000000005175 69.0
BYDH3_k127_8954794_0 tRNA nucleotidyltransferase poly(A) polymerase K00974 - 2.7.7.72 4.184e-254 797.0
BYDH3_k127_8954794_1 recombinase XerD K04763 GO:0000150,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008907,GO:0009009,GO:0009037,GO:0009314,GO:0009628,GO:0009987,GO:0015074,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0071139,GO:0071704,GO:0090304,GO:0140097,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000001778 246.0
BYDH3_k127_8992120_0 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 528.0
BYDH3_k127_9031765_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000003144 268.0
BYDH3_k127_9031765_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000002475 232.0
BYDH3_k127_9031765_2 tartrate metabolic process K01676,K01678 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000004517 222.0
BYDH3_k127_9031765_3 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000002503 190.0
BYDH3_k127_904659_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1054.0
BYDH3_k127_904659_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000002463 188.0
BYDH3_k127_9117267_0 Curli production assembly/transport component CsgG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004197 589.0
BYDH3_k127_9117267_1 gluconolactonase activity K01053,K01179,K07214,K12287 - 3.1.1.17,3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000001649 247.0
BYDH3_k127_9117267_10 - - - - 0.0000000000000000002047 101.0
BYDH3_k127_9117267_12 Curli production assembly/transport component CsgG - - - 0.0000008499 57.0
BYDH3_k127_9117267_2 PFAM ATP-binding region, ATPase domain protein K17752 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000002018 224.0
BYDH3_k127_9117267_3 Curli production assembly/transport component CsgG - - - 0.000000000000000000000000000000000000000000000000000003253 201.0
BYDH3_k127_9117267_4 TIGRFAM addiction module toxin, Txe YoeB family - - - 0.0000000000000000000000000000000000000000000005811 166.0
BYDH3_k127_9117267_5 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000005197 166.0
BYDH3_k127_9117267_6 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.000000000000000000000000000000000003147 139.0
BYDH3_k127_9117267_7 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.0000000000000000000000000000000001216 134.0
BYDH3_k127_9117267_8 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000000000000000000000000002568 130.0
BYDH3_k127_9117267_9 PFAM DRTGG domain - - - 0.000000000000000000000000009453 113.0
BYDH3_k127_9275332_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 313.0
BYDH3_k127_9275332_1 Large family of predicted nucleotide-binding domains - GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 300.0
BYDH3_k127_9275332_2 Adenylate cyclase K05851 GO:0003674,GO:0003824,GO:0004016,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009975,GO:0009987,GO:0016829,GO:0016849,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046058,GO:0046390,GO:0046483,GO:0052652,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000006945 269.0
BYDH3_k127_9275332_3 CarD-like/TRCF domain K07736 - - 0.0000000000000000000000000000000000000000000000005028 180.0
BYDH3_k127_9275332_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.0000000000000000000000006718 109.0
BYDH3_k127_9277266_0 SCP-2 sterol transfer family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 416.0
BYDH3_k127_9277266_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 358.0
BYDH3_k127_9277266_2 nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004264 272.0
BYDH3_k127_9277266_3 PFAM sigma-70 region 2 domain protein K03088 - - 0.0000000000000000000000000000000000000000000000005346 181.0
BYDH3_k127_9277266_4 PFAM Metal-dependent hydrolase HDOD - - - 0.00000000004596 69.0
BYDH3_k127_9313153_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1054.0
BYDH3_k127_9313153_1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01835 - 5.4.2.2 5.805e-240 752.0
BYDH3_k127_9313153_10 - K01822 - 5.3.3.1 0.00000000000000000000002589 111.0
BYDH3_k127_9313153_2 Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 588.0
BYDH3_k127_9313153_3 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 525.0
BYDH3_k127_9313153_4 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 310.0
BYDH3_k127_9313153_5 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 291.0
BYDH3_k127_9313153_6 extracellular solute-binding protein, family 3 K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000005087 233.0
BYDH3_k127_9313153_8 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000007298 179.0
BYDH3_k127_9313153_9 Chalcone isomerase-like - - - 0.000000000000000000000000000000000000006183 152.0
BYDH3_k127_9322988_0 RNA-metabolising metallo-beta-lactamase K07576 - - 2.982e-215 681.0
BYDH3_k127_9322988_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 6.16e-213 670.0
BYDH3_k127_9322988_10 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.000000000000000003649 84.0
BYDH3_k127_9322988_2 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007141 402.0
BYDH3_k127_9322988_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000004023 239.0
BYDH3_k127_9322988_4 COG1585 Membrane protein implicated in regulation of membrane protease activity K07340 - - 0.00000000000000000000000000000000000000000000000001267 184.0
BYDH3_k127_9322988_5 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000000000006527 180.0
BYDH3_k127_9322988_6 Papain-like cysteine protease AvrRpt2 - - - 0.00000000000000000000000000000000000000000001043 167.0
BYDH3_k127_9322988_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000002757 137.0
BYDH3_k127_9322988_8 - - - - 0.00000000000000000000000000002995 122.0
BYDH3_k127_9322988_9 Acid phosphatase homologues - - - 0.000000000000000000000003213 108.0
BYDH3_k127_9347674_0 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 296.0
BYDH3_k127_9347674_1 Sigma-70, region 4 K03089 - - 0.00000000000000000000000000000000000000000000000000000000000189 218.0
BYDH3_k127_9347674_2 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000004085 174.0
BYDH3_k127_9347674_3 Putative single-stranded nucleic acids-binding domain K06346 - - 0.000000000000000000000000000000000000001214 156.0
BYDH3_k127_9347674_4 CS domain K13993 - - 0.00000000000000000000000008034 111.0
BYDH3_k127_9347674_5 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 - 2.1.1.170 0.00000000000001381 81.0
BYDH3_k127_9347674_6 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000003433 69.0
BYDH3_k127_9381628_0 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 497.0
BYDH3_k127_9381628_1 Conserved carboxylase domain K01571,K01960,K03416 - 2.1.3.1,4.1.1.3,6.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000861 486.0
BYDH3_k127_941703_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 366.0
BYDH3_k127_941703_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000431 317.0
BYDH3_k127_941703_2 PFAM Binding-protein-dependent transport system inner membrane component K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009167 319.0
BYDH3_k127_941703_3 phosphate binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001182 280.0
BYDH3_k127_941703_4 negative regulation of phosphate transmembrane transport K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0060255,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000002911 183.0
BYDH3_k127_941703_5 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000002377 104.0
BYDH3_k127_941703_6 Phosphate transporter family K03306 - - 0.0000000007552 59.0
BYDH3_k127_942639_0 S-adenosylmethionine-dependent methyltransferase K06969,K12297 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.191,2.1.1.264 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004796 455.0
BYDH3_k127_942639_1 Cation efflux family K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007792 340.0
BYDH3_k127_942639_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 327.0
BYDH3_k127_942639_3 Succinyl-CoA ligase like flavodoxin domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002341 282.0
BYDH3_k127_942639_4 RNA pseudouridylate synthase K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000002223 217.0
BYDH3_k127_942639_5 Acid phosphatase homologues - - - 0.00000000000000000000000000000000000000001087 164.0
BYDH3_k127_942639_6 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000000000004779 148.0
BYDH3_k127_942639_7 - - - - 0.0000000000000000000000000000000000001226 150.0
BYDH3_k127_942639_8 Major facilitator superfamily - - - 0.00000000008849 63.0
BYDH3_k127_9444599_0 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009289 453.0
BYDH3_k127_9444599_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000003109 89.0
BYDH3_k127_9476379_0 4Fe-4S dicluster domain - - - 1.633e-285 890.0
BYDH3_k127_9476379_1 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 499.0
BYDH3_k127_9476379_2 Aminotransferase class I and II K14155 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 496.0
BYDH3_k127_9476379_3 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 305.0
BYDH3_k127_9476379_4 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007063 285.0
BYDH3_k127_9476379_5 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000007775 261.0
BYDH3_k127_9476379_6 L-2-amino-thiazoline-4-carboxylic acid hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000316 239.0
BYDH3_k127_9476379_7 Ion channel - - - 0.0000000000000000000004817 104.0
BYDH3_k127_9476379_8 - - - - 0.0000000002184 73.0
BYDH3_k127_9476379_9 SdrD B-like domain - - - 0.0002477 48.0
BYDH3_k127_9505847_0 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 332.0
BYDH3_k127_9505847_1 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 321.0
BYDH3_k127_9505847_2 Bacterial extracellular solute-binding protein, family 7 K11688,K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000007765 240.0
BYDH3_k127_9505847_3 TRAP transporter T-component - - - 0.000000000000000000000000000000000000000000000009647 182.0
BYDH3_k127_9505847_4 toxin-antitoxin pair type II binding - - - 0.000000000000000000000000342 108.0
BYDH3_k127_9505847_5 Protein of unknown function (DUF2288) - - - 0.0000000008037 64.0
BYDH3_k127_9512223_0 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 381.0
BYDH3_k127_9512223_1 Cobalt transport protein K02008 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000398 284.0
BYDH3_k127_9512223_2 response regulator K03413 - - 0.0000000000000000001575 92.0
BYDH3_k127_9552175_0 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 492.0
BYDH3_k127_9552175_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009191 439.0
BYDH3_k127_9552175_2 Pfam:Kce K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 443.0
BYDH3_k127_9552175_3 CoA-transferase activity K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 390.0
BYDH3_k127_9552175_4 Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 360.0
BYDH3_k127_9552175_5 Enoyl-CoA hydratase/isomerase K13767,K13816 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000007709 244.0
BYDH3_k127_9552175_6 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000004675 139.0
BYDH3_k127_9552175_7 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.000000000000000000000000000001973 136.0
BYDH3_k127_9552175_8 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000003856 99.0
BYDH3_k127_9552175_9 PFAM short-chain dehydrogenase reductase SDR - - - 0.00000000009964 73.0
BYDH3_k127_9560377_0 aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 427.0
BYDH3_k127_9560377_1 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000003977 260.0
BYDH3_k127_9560377_10 Transcriptional regulatory protein, C terminal K10682 GO:0008150,GO:0010468,GO:0019222,GO:0050789,GO:0060255,GO:0065007 - 0.000000000000000000007215 96.0
BYDH3_k127_9560377_11 Universal stress protein K06149 - - 0.0000000001708 67.0
BYDH3_k127_9560377_12 Tetratricopeptide repeat - - - 0.000000001006 71.0
BYDH3_k127_9560377_13 Exonuclease VII small subunit K03602 - 3.1.11.6 0.000001407 53.0
BYDH3_k127_9560377_2 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000148 229.0
BYDH3_k127_9560377_3 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000005619 217.0
BYDH3_k127_9560377_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000008594 197.0
BYDH3_k127_9560377_5 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000229 149.0
BYDH3_k127_9560377_6 HDOD domain - - - 0.000000000000000000000000000001706 131.0
BYDH3_k127_9560377_7 DnaJ molecular chaperone homology domain K05516 - - 0.00000000000000000000000000004403 125.0
BYDH3_k127_9560377_8 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000001023 116.0
BYDH3_k127_9560377_9 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000002494 109.0
BYDH3_k127_9572158_0 PFAM binding-protein-dependent transport systems inner membrane component K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 389.0
BYDH3_k127_9572158_1 PFAM ABC transporter related K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 364.0
BYDH3_k127_9572158_2 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007557 351.0
BYDH3_k127_9572158_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000007996 77.0
BYDH3_k127_9572158_4 flavin adenine dinucleotide binding. It is involved in the biological process described with oxidation-reduction process K00248 GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004085,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016491,GO:0016627,GO:0017076,GO:0019395,GO:0019605,GO:0019626,GO:0019752,GO:0022607,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033218,GO:0033539,GO:0033993,GO:0034440,GO:0036094,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046359,GO:0046395,GO:0046459,GO:0048037,GO:0048545,GO:0050660,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051384,GO:0052890,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681 1.3.8.1 0.00000001758 65.0
BYDH3_k127_9607497_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 294.0
BYDH3_k127_9607497_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000002908 259.0
BYDH3_k127_9607497_2 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000005274 141.0
BYDH3_k127_9607497_3 Elongation factor Tu C-terminal domain K02358 - - 0.000000000000000006205 83.0
BYDH3_k127_9607497_4 - - - - 0.00000000008397 64.0
BYDH3_k127_9643890_0 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.0000000000000000000000000000000000000000000000000000000003721 207.0
BYDH3_k127_9643890_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000002909 196.0
BYDH3_k127_9643890_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000002653 130.0
BYDH3_k127_9643890_3 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0000000000000000000008823 96.0
BYDH3_k127_9643890_4 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000001574 87.0
BYDH3_k127_9702645_0 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 404.0
BYDH3_k127_9755556_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000000000000000000001663 100.0
BYDH3_k127_9755556_1 Predicted permease K07089 - - 0.00002618 56.0
BYDH3_k127_9760825_0 PDZ domain (Also known as DHR or GLGF) K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 501.0
BYDH3_k127_9760825_1 Thioredoxin domain K03387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004072 308.0
BYDH3_k127_9760825_2 PFAM TrkA-N domain K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000004635 235.0
BYDH3_k127_9760825_3 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.00000000000000000000000000000000000000000000000000001561 192.0
BYDH3_k127_9760825_4 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 0.00000000000000000000000000000000000000000000000202 176.0
BYDH3_k127_9760825_6 COG0168 Trk-type K transport systems, membrane components - - - 0.00000934 48.0
BYDH3_k127_9850490_0 COGs COG0318 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666,K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008876 437.0
BYDH3_k127_9850490_1 Phosphopantetheine attachment site - - - 0.0000000003412 61.0
BYDH3_k127_9850490_2 Psort location Cytoplasmic, score - - - 0.000000003358 58.0
BYDH3_k127_9865525_0 proline dipeptidase activity K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 535.0
BYDH3_k127_9865525_1 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 441.0
BYDH3_k127_9865525_10 - - - - 0.0000000000002022 75.0
BYDH3_k127_9865525_11 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K02491 - 2.7.13.3 0.00000000002636 78.0
BYDH3_k127_9865525_2 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 372.0
BYDH3_k127_9865525_3 histidine kinase HAMP region domain protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 376.0
BYDH3_k127_9865525_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 342.0
BYDH3_k127_9865525_5 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 286.0
BYDH3_k127_9865525_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001342 280.0
BYDH3_k127_9865525_7 Fe-S-cluster oxidoreductase K06940 - - 0.00000000000000000000000000000000000000000000001999 173.0
BYDH3_k127_9865525_8 Sterol carrier protein - - - 0.000000000000000000000000000000000002575 141.0
BYDH3_k127_9865525_9 - - - - 0.000000000000000000000001751 109.0
BYDH3_k127_9877141_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 355.0
BYDH3_k127_9877141_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004838 275.0
BYDH3_k127_9877141_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046429,GO:0046490,GO:0046872,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000003039 269.0
BYDH3_k127_9877141_3 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005103 249.0
BYDH3_k127_9877141_4 PFAM AzlC family protein - - - 0.000000000000000000000000000000000000000000000000000000005204 207.0
BYDH3_k127_9877141_5 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000001197 197.0
BYDH3_k127_9877141_6 molybdenum cofactor guanylyltransferase activity K03752,K13818 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.77 0.000000000000000000000000000000000000000000000162 179.0
BYDH3_k127_9877141_7 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000005655 169.0
BYDH3_k127_9877141_8 ATP-binding region ATPase domain protein, response regulator receiver, histidine kinase A domain protein - - - 0.0000000000000000000000000000000000004705 160.0
BYDH3_k127_9877141_9 Branched-chain amino acid transport protein (AzlD) - - - 0.00000000000000000000008836 101.0
BYDH3_k127_9882291_0 Carboxyl transferase domain K01969,K13778 - 6.4.1.4,6.4.1.5 1.866e-257 802.0
BYDH3_k127_9882291_1 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008814 333.0
BYDH3_k127_9882291_2 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000216 141.0
BYDH3_k127_9882291_3 Glycosyl transferase 4-like domain K21011 - - 0.0000000184 59.0
BYDH3_k127_9882291_4 PFAM Carbamoyl-phosphate synthase L chain K01961 - 6.3.4.14,6.4.1.2 0.00000004052 54.0
BYDH3_k127_9886284_0 PhoH-like protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 388.0
BYDH3_k127_9886284_1 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 326.0
BYDH3_k127_9886284_2 PFAM AIR synthase related protein domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001571 227.0
BYDH3_k127_9886284_3 PFAM 6-pyruvoyl tetrahydropterin synthase and K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000002478 142.0
BYDH3_k127_9886284_4 Uncharacterized protein family UPF0054 K07042 - - 0.000000000001389 76.0
BYDH3_k127_9928403_0 Major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009008 369.0
BYDH3_k127_9928403_1 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 289.0
BYDH3_k127_9928403_2 Enoyl-CoA hydratase/isomerase K13767,K13816 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000009658 222.0
BYDH3_k127_9928403_3 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000000000000000000000000000000000000000000001119 192.0
BYDH3_k127_9928403_4 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000005226 178.0
BYDH3_k127_9928403_5 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000006055 156.0
BYDH3_k127_9928403_6 Amidohydrolase - - - 0.0000000000000000000000000000000000000000126 156.0
BYDH3_k127_9928403_7 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.00000000000014 75.0
BYDH3_k127_9928403_8 iron-sulfur transferase activity K04488,K15790 - - 0.000000000000225 79.0
BYDH3_k127_9969474_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 546.0
BYDH3_k127_9969474_1 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000111 225.0
BYDH3_k127_9969474_2 dinitrogenase iron-molybdenum cofactor - - - 0.00000000000000000000000000000000000000000001655 164.0
BYDH3_k127_9969474_3 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000001341 79.0
BYDH3_k127_9969474_5 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000006931 63.0
BYDH3_k127_9969474_7 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000004347 63.0
BYDH3_k127_9984910_0 C-terminal, D2-small domain, of ClpB protein K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 553.0
BYDH3_k127_9984910_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 531.0
BYDH3_k127_9984910_2 Glycoprotease family K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 329.0
BYDH3_k127_9984910_3 nucleic acid binding OB-fold tRNA helicase-type K03698 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001687 270.0
BYDH3_k127_9984910_4 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000051 252.0
BYDH3_k127_9984910_5 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000009216 242.0
BYDH3_k127_9984910_6 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000006002 233.0
BYDH3_k127_9984910_7 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000000000000000000000003775 167.0
BYDH3_k127_9984910_8 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000001716 160.0
BYDH3_k127_9984910_9 Adenylosuccinate lyase C-terminus K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.00000009561 53.0
BYDH3_k127_998532_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005288 540.0
BYDH3_k127_998532_1 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 GO:0000302,GO:0003674,GO:0003824,GO:0004601,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016661,GO:0016684,GO:0042221,GO:0042493,GO:0042542,GO:0046677,GO:0050418,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748 1.7.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 509.0
BYDH3_k127_998532_2 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000001895 181.0
BYDH3_k127_998532_3 YCII-related domain K09780 - - 0.00000000000000000000000006715 111.0
BYDH3_k127_9986895_0 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000456 248.0
BYDH3_k127_9986895_1 protein conserved in bacteria (DUF2179) - - - 0.0000000000000000000000000000000000000000000000000001061 194.0
BYDH3_k127_9986895_2 Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides K10011 - 1.1.1.305,2.1.2.13 0.000000000000000000000000000000000000000000003966 173.0