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Overview

ID MAG00300
Name CMS1_bin.113
Sample SMP0010
Taxonomy
Kingdom Bacteria
Phylum Campylobacterota
Class Campylobacteria
Order Campylobacterales
Family Sulfurimonadaceae
Genus
Species
Assembly information
Completeness (%) 83.46
Contamination (%) 1.02
GC content (%) 41.0
N50 (bp) 8,266
Genome size (bp) 2,130,804

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2110

Gene name Description KEGG GOs EC E-value Score Sequence
CMS1_k127_1010570_0 Belongs to the Orn Lys Arg decarboxylase class-II family. NspC subfamily K13747 - 4.1.1.96 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003626 595.0
CMS1_k127_1010570_1 Cation transporter/ATPase, N-terminus K01539 - 3.6.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 602.0
CMS1_k127_1010570_11 Bacteriophage replication gene A protein (GPA) - - - 0.0000000000001542 72.0
CMS1_k127_1010570_13 Protein of unknown function (DUF1566) - - - 0.0000917 51.0
CMS1_k127_1010570_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007217 435.0
CMS1_k127_1010570_3 flavin adenine dinucleotide binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 380.0
CMS1_k127_1010570_4 Cation transporter/ATPase, N-terminus K01539 - 3.6.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006382 376.0
CMS1_k127_1010570_5 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005798 274.0
CMS1_k127_1010570_6 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001708 253.0
CMS1_k127_1010570_7 Histidine kinase K13040 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000007684 259.0
CMS1_k127_1010570_8 response to abiotic stimulus K21439 - - 0.0000000000000000000000000000000000000000000001753 171.0
CMS1_k127_1010570_9 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000002148 106.0
CMS1_k127_1018288_0 COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537 505.0
CMS1_k127_1018288_1 pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 454.0
CMS1_k127_1018288_2 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 326.0
CMS1_k127_1018288_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000002472 133.0
CMS1_k127_1018288_4 COG0457 FOG TPR repeat - - - 0.000000000000000000000000001693 125.0
CMS1_k127_1018893_0 fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 2.602e-228 718.0
CMS1_k127_1018893_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 8.974e-198 622.0
CMS1_k127_1018893_10 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000001618 173.0
CMS1_k127_1018893_11 PFAM Ferric reductase domain protein transmembrane component domain K17247 - - 0.000000000000000000000000000000000000009149 152.0
CMS1_k127_1018893_13 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000001843 101.0
CMS1_k127_1018893_15 LuxR family - - - 0.00000000000122 69.0
CMS1_k127_1018893_16 von willebrand factor, type A K20276 - - 0.0000000002741 74.0
CMS1_k127_1018893_2 transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008585 506.0
CMS1_k127_1018893_3 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 409.0
CMS1_k127_1018893_4 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00018 - 1.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 386.0
CMS1_k127_1018893_5 fumarate reductase, iron-sulfur protein K00245 - 1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001738 277.0
CMS1_k127_1018893_6 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005699 269.0
CMS1_k127_1018893_7 - K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000002524 199.0
CMS1_k127_1018893_8 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000352 211.0
CMS1_k127_1018893_9 Bacterial transcriptional repressor - - - 0.00000000000000000000000000000000000000000000001024 178.0
CMS1_k127_1025522_0 ATP-dependent DNA helicase K03655 - 3.6.4.12 8.846e-196 627.0
CMS1_k127_1025522_1 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 566.0
CMS1_k127_1025522_10 type IV pilus modification protein PilV - - - 0.00000000000000000009056 98.0
CMS1_k127_1025522_2 Peptidase, M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009953 441.0
CMS1_k127_1025522_3 Hep Hag repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008142 435.0
CMS1_k127_1025522_4 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007265 282.0
CMS1_k127_1025522_5 sigma 54 modulation protein ribosomal protein S30EA K05808 - - 0.000000000000000000000000000000000000000000000000000000000008857 211.0
CMS1_k127_1025522_6 Prepilin-type N-terminal cleavage methylation domain - - - 0.0000000000000000000000000000000000000000002124 171.0
CMS1_k127_1025522_7 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.00000000000000000000000000006268 117.0
CMS1_k127_1025522_8 - - - - 0.000000000000000000000000002248 116.0
CMS1_k127_1025522_9 Domain of unknown function DUF302 - - - 0.000000000000000000004009 98.0
CMS1_k127_1027896_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 3.488e-293 905.0
CMS1_k127_1027896_1 membrane-associated protein - - - 0.0000000000000000000000000000000000000000000000000000000001496 208.0
CMS1_k127_1027896_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.0000000000000000000000000000000000000000000000000001021 194.0
CMS1_k127_1027896_3 Histidine kinase K07645 - 2.7.13.3 0.000000000000000000000000111 121.0
CMS1_k127_1027896_4 - - - - 0.0000000000000000000000005475 111.0
CMS1_k127_1027896_5 Na+/H+ antiporter family - - - 0.00004587 46.0
CMS1_k127_1046585_0 Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA K03212 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.189 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 455.0
CMS1_k127_1046585_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 438.0
CMS1_k127_1046585_10 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000417 181.0
CMS1_k127_1046585_11 DNA processing protein K04096 - - 0.0000000000000000000000005625 107.0
CMS1_k127_1046585_12 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.00000000000000000000001202 102.0
CMS1_k127_1046585_13 Toll - interleukin 1 - resistance - - - 0.0000000000000001257 88.0
CMS1_k127_1046585_2 Belongs to the ParA family K03609 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009912 404.0
CMS1_k127_1046585_3 leucine binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 340.0
CMS1_k127_1046585_4 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 314.0
CMS1_k127_1046585_5 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 293.0
CMS1_k127_1046585_6 ABC-type phosphate phosphonate transport system periplasmic component K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000007427 244.0
CMS1_k127_1046585_7 Predicted metal-dependent hydrolase K07044 - - 0.00000000000000000000000000000000000000000000000000000000003443 214.0
CMS1_k127_1046585_8 Haem-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000008861 205.0
CMS1_k127_1046585_9 Divergent polysaccharide deacetylase K09798 - - 0.000000000000000000000000000000000000000000000000000000002395 212.0
CMS1_k127_1086859_0 Acyltransferase K05939 - 2.3.1.40,6.2.1.20 0.0 1182.0
CMS1_k127_1086859_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 1.789e-288 897.0
CMS1_k127_1086859_2 Saccharopine dehydrogenase K00290 - 1.5.1.7 1.76e-235 730.0
CMS1_k127_1086859_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000006975 229.0
CMS1_k127_1086859_4 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000000001703 112.0
CMS1_k127_1086859_5 Family of unknown function (DUF695) - - - 0.00000000000000000009647 98.0
CMS1_k127_1086859_6 - - - - 0.000000000000000007646 88.0
CMS1_k127_109442_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003586 421.0
CMS1_k127_109442_1 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 328.0
CMS1_k127_109442_2 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000000000000000000003937 194.0
CMS1_k127_109442_3 Tellurite resistance protein TehB - - - 0.000000000000000000000000000000000000000000000000007914 186.0
CMS1_k127_109442_4 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000001815 179.0
CMS1_k127_1133929_0 COG0659 Sulfate permease and related K03321 - - 3.082e-220 693.0
CMS1_k127_1133929_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 581.0
CMS1_k127_1202741_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 1.178e-215 686.0
CMS1_k127_1202741_10 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000001482 117.0
CMS1_k127_1202741_11 - - - - 0.0000000000000000000000002291 113.0
CMS1_k127_1202741_2 Belongs to the glucose-6-phosphate 1-epimerase family K01792 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716 5.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001052 274.0
CMS1_k127_1202741_3 PFAM adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002661 271.0
CMS1_k127_1202741_4 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000001585 210.0
CMS1_k127_1202741_5 RNase H - - - 0.0000000000000000000000000000000000000000001221 166.0
CMS1_k127_1202741_6 Domain of unknown function (DUF4405) - - - 0.00000000000000000000000000000000000000000145 163.0
CMS1_k127_1202741_7 Is required to sustain N(2)-dependent growth in the presence of low levels of carbon monoxide (CO). Probably acts by protecting the N(2) fixation ability of the nitrogenase complex, which is inactivated in the presence of CO K21694 - - 0.0000000000000000000000000000000000001568 143.0
CMS1_k127_1202741_8 Domain of unknown function (DUF4442) - - - 0.000000000000000000000000000000004574 133.0
CMS1_k127_1202741_9 Predicted membrane protein (DUF2306) - - - 0.00000000000000000000000000003634 124.0
CMS1_k127_1221973_0 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 482.0
CMS1_k127_1221973_1 - - - - 0.0000000000000000000000000000000000000000000005885 168.0
CMS1_k127_1237571_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1412.0
CMS1_k127_1237571_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.632e-205 647.0
CMS1_k127_1237571_2 type II secretion system protein E K02454,K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 547.0
CMS1_k127_1237571_3 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 339.0
CMS1_k127_1237571_4 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000003525 113.0
CMS1_k127_1237571_5 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.000000000000000001561 85.0
CMS1_k127_1237571_6 - - - - 0.0000002114 52.0
CMS1_k127_1237571_7 - - - - 0.0000004949 53.0
CMS1_k127_1237571_8 - - - - 0.0003345 45.0
CMS1_k127_1283048_0 Acyl-CoA dehydrogenase, N-terminal domain K14448 - 1.3.8.12 2.563e-234 743.0
CMS1_k127_1283048_1 Enoyl-CoA hydratase/isomerase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 602.0
CMS1_k127_1322234_0 Belongs to the FtsK SpoIIIE SftA family K03466 - - 1.032e-248 789.0
CMS1_k127_1322234_1 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005603 480.0
CMS1_k127_1322234_2 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000000000000000000000002465 131.0
CMS1_k127_1332090_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1181.0
CMS1_k127_1332090_1 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 348.0
CMS1_k127_1332090_2 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 318.0
CMS1_k127_1332090_3 - - - - 0.0000000000000000000000000000000000000000000000003249 181.0
CMS1_k127_1332090_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000004509 124.0
CMS1_k127_138382_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007329 280.0
CMS1_k127_138382_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000007266 132.0
CMS1_k127_138382_2 S4 domain protein - - - 0.0000000000000000000000000001278 116.0
CMS1_k127_1403885_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 - 2.7.7.6 0.0 2462.0
CMS1_k127_1403885_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1609.0
CMS1_k127_1403885_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000000002041 236.0
CMS1_k127_1403885_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000004158 143.0
CMS1_k127_1480860_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 6.054e-209 655.0
CMS1_k127_1480860_1 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000006384 233.0
CMS1_k127_1480860_2 - - - - 0.0000000000000000000000000000000000000866 146.0
CMS1_k127_1480860_3 glucose galactose transporter K02429 - - 0.00000000000002978 73.0
CMS1_k127_1480860_6 Histidine kinase - - - 0.0001427 48.0
CMS1_k127_1532651_0 Belongs to the 5'-nucleotidase family K01119,K17224 - 3.1.3.6,3.1.4.16 0.0 1032.0
CMS1_k127_1532651_1 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 374.0
CMS1_k127_1532651_2 oxidation protein SoxZ K17227 - - 0.000000000000000000000000000000000000000000000005265 173.0
CMS1_k127_153969_0 ABC transporter K11085 - - 3.803e-200 638.0
CMS1_k127_153969_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 601.0
CMS1_k127_153969_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 369.0
CMS1_k127_153969_3 - - - - 0.0000000000000000000000000009925 116.0
CMS1_k127_153969_4 MerR HTH family regulatory protein - - - 0.00005972 45.0
CMS1_k127_1560999_0 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000002017 203.0
CMS1_k127_1560999_1 M18 family aminopeptidase 2 K01267 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008270,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.21 0.000000000000000000000000000000000000000000001271 168.0
CMS1_k127_1560999_2 Ankyrin repeat and KH domain-containing protein K16726 GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007005,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0009605,GO:0009607,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010506,GO:0010507,GO:0010639,GO:0010821,GO:0010823,GO:0010927,GO:0010941,GO:0016043,GO:0019222,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022607,GO:0023052,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030239,GO:0031032,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0040011,GO:0042692,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044085,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0045087,GO:0045214,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051146,GO:0051704,GO:0051707,GO:0051716,GO:0055001,GO:0055002,GO:0060361,GO:0060548,GO:0061061,GO:0065007,GO:0070925,GO:0071840,GO:0090596,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:1903146,GO:1903147 - 0.000000000000000003455 99.0
CMS1_k127_1564343_0 leucine binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000216 355.0
CMS1_k127_1564343_1 Desulfoferrodoxin ferrous iron-binding K05919 - 1.15.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000004249 258.0
CMS1_k127_1564343_2 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000007913 209.0
CMS1_k127_1564343_3 thioesterase K07107 - - 0.0000000000000000000000000000006083 125.0
CMS1_k127_1581672_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 3.471e-247 771.0
CMS1_k127_1581672_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 8.661e-204 639.0
CMS1_k127_1581672_10 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000001986 78.0
CMS1_k127_1581672_11 RESPONSE REGULATOR receiver K07288 - - 0.00002006 56.0
CMS1_k127_1581672_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005045 550.0
CMS1_k127_1581672_3 ABC transporter permease K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 391.0
CMS1_k127_1581672_4 Enoyl- acyl-carrier-protein reductase NADH K00208 GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 376.0
CMS1_k127_1581672_5 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002409 276.0
CMS1_k127_1581672_6 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000001098 256.0
CMS1_k127_1581672_7 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000001234 163.0
CMS1_k127_1581672_8 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000008912 113.0
CMS1_k127_1581672_9 Belongs to the UPF0246 family K09861 - - 0.00000000000000000006836 92.0
CMS1_k127_1591226_0 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004751 262.0
CMS1_k127_1591226_1 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000000002015 239.0
CMS1_k127_1591226_2 Archaea bacterial proteins of unknown function K06921 - - 0.0000000000000000000000000000000001943 133.0
CMS1_k127_1591226_3 - - - - 0.0000000000007641 74.0
CMS1_k127_1604208_0 peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 486.0
CMS1_k127_1604208_1 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006353 466.0
CMS1_k127_1604208_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 417.0
CMS1_k127_1604208_3 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000003531 257.0
CMS1_k127_1604208_4 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000001182 146.0
CMS1_k127_1604208_5 Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization K03610 - - 0.00000000000000000000004189 106.0
CMS1_k127_1604208_6 COG1214 Inactive homolog of metal-dependent proteases - - - 0.00000000000000002917 83.0
CMS1_k127_1610089_0 Single-stranded-DNA-specific exonuclease (RecJ) K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006531 606.0
CMS1_k127_1610089_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 456.0
CMS1_k127_1619823_0 amino acid carrier protein K03310 - - 1.964e-233 728.0
CMS1_k127_1636429_0 chemotaxis protein K03407 - 2.7.13.3 2.477e-284 889.0
CMS1_k127_1636429_1 PFAM Methyl-accepting chemotaxis protein (MCP) signaling domain K03406,K05875 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 527.0
CMS1_k127_1636429_2 Chemotaxis protein CheW K03408 - - 0.000000000000000000000000000000000000000000000000000000019 200.0
CMS1_k127_170642_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1046.0
CMS1_k127_170642_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 475.0
CMS1_k127_170642_10 bacterioferritin comigratory protein K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000003741 234.0
CMS1_k127_170642_11 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000003934 240.0
CMS1_k127_170642_12 Glycosyl transferase family, helical bundle domain - - - 0.0000000000000000000000000000000000000000000000000000001617 204.0
CMS1_k127_170642_13 Phosphoesterase K07095 - - 0.000000000000000000000000000000000000000000000000001211 188.0
CMS1_k127_170642_14 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000001127 166.0
CMS1_k127_170642_15 Protein of unknown function (DUF523) - - - 0.00000000000000000000000000000000001009 141.0
CMS1_k127_170642_16 - - - - 0.00000000000000000000000000000001136 130.0
CMS1_k127_170642_2 Protein of unknown function (DUF3373) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 482.0
CMS1_k127_170642_3 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006103 425.0
CMS1_k127_170642_4 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 400.0
CMS1_k127_170642_5 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 392.0
CMS1_k127_170642_6 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 341.0
CMS1_k127_170642_7 abc transporter atp-binding protein K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001147 276.0
CMS1_k127_170642_8 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003089 251.0
CMS1_k127_170642_9 Flagellar biosynthetic protein fliR K02421 - - 0.000000000000000000000000000000000000000000000000000000000000000000009378 241.0
CMS1_k127_1708728_0 COGs COG3797 conserved - - - 0.00000000000000000000000000000000000000003342 159.0
CMS1_k127_1708728_1 Winged helix DNA-binding domain - - - 0.0000000000000000000000000006212 120.0
CMS1_k127_1708728_3 COG1943 Transposase and inactivated derivatives - - - 0.00000000000000009939 84.0
CMS1_k127_1716678_0 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005667 286.0
CMS1_k127_1716678_1 uracil phosphoribosyltransferase K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000001163 227.0
CMS1_k127_1716678_2 PFAM AMMECR1 domain protein K09141 - - 0.0000000000000000007523 87.0
CMS1_k127_1739611_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003289 556.0
CMS1_k127_1739611_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005827 545.0
CMS1_k127_1739611_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.00000000005044 64.0
CMS1_k127_1739611_3 endonuclease containing a URI domain K07461 - - 0.00004754 45.0
CMS1_k127_1739611_4 endonuclease containing a URI domain K07461 - - 0.00006318 45.0
CMS1_k127_1743462_0 DNA polymerase K02337 - 2.7.7.7 0.0 1713.0
CMS1_k127_1743462_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009661 444.0
CMS1_k127_1743462_2 response regulator - - - 0.0000000000000000000000000000000000000003928 155.0
CMS1_k127_1748038_0 Type I secretion system ATPase K11004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007357 586.0
CMS1_k127_1748038_1 membrane-fusion protein K11003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007588 250.0
CMS1_k127_17647_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 7.349e-273 844.0
CMS1_k127_17647_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003049 321.0
CMS1_k127_17647_2 AsmA-like C-terminal region - - - 0.000000000000001486 90.0
CMS1_k127_1793507_0 Sterol-sensing domain of SREBP cleavage-activation K07003 - - 4.795e-199 647.0
CMS1_k127_1793507_1 Formylmethanofuran dehydrogenase, subunit e - - - 0.0000000000000000000000000000000000000000000000000000000000000001863 227.0
CMS1_k127_1793507_2 Nudix domain K08077 - 3.6.1.45 0.000000000000000000000000000000000000000000000000347 179.0
CMS1_k127_1793507_3 diguanylate cyclase - - - 0.0000000000003275 76.0
CMS1_k127_1796721_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 2.189e-256 807.0
CMS1_k127_1796721_1 Belongs to the flagella basal body rod proteins family K02392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005837 409.0
CMS1_k127_1796721_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 341.0
CMS1_k127_1796721_3 flagellar basal body K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 302.0
CMS1_k127_1796721_4 COGs COG0665 Glycine D-amino acid oxidase (deaminating) K15461 - 2.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003639 284.0
CMS1_k127_1796721_5 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000007481 203.0
CMS1_k127_1796721_6 QacR-like protein, C-terminal region - - - 0.000000000002873 74.0
CMS1_k127_1796721_7 peptidoglycan-binding protein - GO:0003674,GO:0005488,GO:0008150,GO:0010035,GO:0010038,GO:0030955,GO:0031420,GO:0035864,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896 - 0.000000000218 70.0
CMS1_k127_1803549_0 Peptidase family M41 - - - 1.312e-248 791.0
CMS1_k127_1803549_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000005193 213.0
CMS1_k127_1803549_2 Bacterial transcriptional repressor C-terminal K16137 - - 0.000000000000000000000000000000000000000000000002277 179.0
CMS1_k127_1803549_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000005564 149.0
CMS1_k127_1803549_4 Bacterial transcriptional repressor - - - 0.0000000000000000000000000000007321 128.0
CMS1_k127_1803549_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000001075 96.0
CMS1_k127_1803549_6 Bacterial transcription activator, effector binding domain - - - 0.00002712 53.0
CMS1_k127_1804750_0 PFAM biotin lipoyl attachment domain-containing protein K01960 - 6.4.1.1 9.4e-323 994.0
CMS1_k127_1804750_1 COG1883 Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit K01572 - 4.1.1.3 5.82e-202 637.0
CMS1_k127_1804750_2 - - - - 0.00000000000000000000000126 106.0
CMS1_k127_1804750_3 Oxaloacetate decarboxylase, gamma chain K01573 - 4.1.1.3 0.0000000000000128 76.0
CMS1_k127_1804750_4 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000004067 64.0
CMS1_k127_1804750_5 Diguanylate cyclase - - - 0.00000003029 60.0
CMS1_k127_1847932_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 GO:0000018,GO:0008150,GO:0009892,GO:0010605,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0045910,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0060255,GO:0065007,GO:0080090 - 9.18e-235 747.0
CMS1_k127_1847932_1 Belongs to the aldehyde dehydrogenase family - - - 3.197e-223 699.0
CMS1_k127_1847932_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 548.0
CMS1_k127_1847932_3 COG0436 Aspartate tyrosine aromatic aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 499.0
CMS1_k127_1847932_4 phosphorelay signal transduction system K01768,K07315 - 3.1.3.3,4.6.1.1 0.000000000000000000000000000000003135 140.0
CMS1_k127_1855379_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 2.144e-311 984.0
CMS1_k127_1855379_1 Peptidase M1 membrane alanine aminopeptidase K01256,K08776 - 3.4.11.2 4.097e-290 914.0
CMS1_k127_1855379_2 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 589.0
CMS1_k127_1894565_0 ADP-ribosylglycohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 597.0
CMS1_k127_1894565_1 PhnA domain K06193 - - 0.000000000000000000000000000000000000009548 147.0
CMS1_k127_1894565_2 - - - - 0.00000000000000000000000000000001117 133.0
CMS1_k127_1894565_3 Uncharacterized conserved protein (DUF2164) - - - 0.00000000000000000000000000002383 118.0
CMS1_k127_1911069_0 S1 domain K00243 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009401 304.0
CMS1_k127_1911069_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006457,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0034613,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042802,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061077,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0003504 43.0
CMS1_k127_1917307_0 Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006095 592.0
CMS1_k127_1917307_1 Bacterial periplasmic substrate-binding proteins - - - 0.00000000000000000000000000000000000000000000000003844 200.0
CMS1_k127_1917307_2 cytochrome C oxidoreductase subunit B - - - 0.000000000000000000000000000000000000003072 148.0
CMS1_k127_1917307_3 GGDEF domain - - - 0.000000000000232 83.0
CMS1_k127_1920573_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006434 586.0
CMS1_k127_1920573_1 PFAM NAD dependent epimerase dehydratase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 299.0
CMS1_k127_1921805_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 1.24e-249 783.0
CMS1_k127_1921805_1 Belongs to the UbiD family K03182 - 4.1.1.98 7.607e-224 699.0
CMS1_k127_1921805_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 427.0
CMS1_k127_1921805_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004317 384.0
CMS1_k127_1921805_4 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005863 322.0
CMS1_k127_1921805_5 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001061 272.0
CMS1_k127_1921805_6 FxsA cytoplasmic membrane protein K01649,K07113 - 2.3.3.13 0.0000000003501 66.0
CMS1_k127_1925456_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1519.0
CMS1_k127_1925456_1 Glutathionylspermidine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 579.0
CMS1_k127_1925456_2 Belongs to the DNA mismatch repair MutS family K03555 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005993 348.0
CMS1_k127_1925456_3 - - - - 0.0000000000000000000000000000000000000000001103 165.0
CMS1_k127_1925456_4 L-threonylcarbamoyladenylate synthase - - - 0.00000000000000000000000000000673 124.0
CMS1_k127_1925456_5 chemotaxis protein K03406 - - 0.0000000000000000000004402 111.0
CMS1_k127_1925456_6 - - - - 0.0000000000000003757 84.0
CMS1_k127_1928983_0 COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component K09014 - - 1.814e-225 703.0
CMS1_k127_1928983_1 TIGRFAM FeS assembly ATPase SufC K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 290.0
CMS1_k127_1928983_2 COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component K09015 - - 0.0000000000000000000000000002473 128.0
CMS1_k127_1928983_3 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000006356 100.0
CMS1_k127_194930_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1298.0
CMS1_k127_194930_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1059.0
CMS1_k127_194930_2 Cytochrome c biogenesis protein - - - 1.356e-298 948.0
CMS1_k127_194930_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 495.0
CMS1_k127_194930_4 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 383.0
CMS1_k127_194930_5 Signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 308.0
CMS1_k127_194930_6 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001352 266.0
CMS1_k127_194930_7 FeS assembly protein SufB K09014 - - 0.0000000000000000000000000000000004175 133.0
CMS1_k127_1992849_0 Diguanylate cyclase - - - 2.813e-232 734.0
CMS1_k127_1992849_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 287.0
CMS1_k127_1992849_2 PFAM Na Pi-cotransporter K03324 - - 0.000001373 50.0
CMS1_k127_2007397_0 Glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 2205.0
CMS1_k127_2007397_1 Glutamate synthase K00266 - 1.4.1.13,1.4.1.14 6.324e-224 701.0
CMS1_k127_2007397_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 440.0
CMS1_k127_2007397_3 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000002995 199.0
CMS1_k127_2007397_4 RecO N terminal - - - 0.00000000000000000000000000000000000000000000001063 173.0
CMS1_k127_2007397_5 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.0001846 44.0
CMS1_k127_2037541_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003741 412.0
CMS1_k127_2037541_1 Protein of unknown function, DUF393 - - - 0.0000000000000000000000000000008722 124.0
CMS1_k127_2040511_0 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 - 2.1.1.13 0.0 1896.0
CMS1_k127_2040511_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 2.48e-220 688.0
CMS1_k127_2040511_10 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000000000000000000003901 234.0
CMS1_k127_2040511_11 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000000000000000000006342 233.0
CMS1_k127_2040511_12 Pfam Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000004819 216.0
CMS1_k127_2040511_13 HD domain - - - 0.0000000000000000000000000000000000000000000000000000001633 206.0
CMS1_k127_2040511_14 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000000000000000000000001606 187.0
CMS1_k127_2040511_15 COG1393 Arsenate reductase and related K00537 - 1.20.4.1 0.000000000000000000000000000000000000015 148.0
CMS1_k127_2040511_16 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000001038 139.0
CMS1_k127_2040511_17 PDP protein - - - 0.000000000000000000000000000003022 126.0
CMS1_k127_2040511_18 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000000000004125 120.0
CMS1_k127_2040511_19 Transcriptional regulator - - - 0.00000000000000000000000007464 112.0
CMS1_k127_2040511_2 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007991 583.0
CMS1_k127_2040511_20 Protein of unknown function, DUF255 - - - 0.0000000000000000001741 94.0
CMS1_k127_2040511_21 Flagellar FliJ protein - - - 0.000000000000001565 82.0
CMS1_k127_2040511_3 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 577.0
CMS1_k127_2040511_4 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006051 537.0
CMS1_k127_2040511_5 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 504.0
CMS1_k127_2040511_6 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008388 438.0
CMS1_k127_2040511_7 PFAM tRNA synthetase class II (G H P and S) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004307 334.0
CMS1_k127_2040511_8 Serine aminopeptidase, S33 K15756 - 3.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000301 272.0
CMS1_k127_2040511_9 protein conserved in bacteria K09804 - - 0.000000000000000000000000000000000000000000000000000000000000000000001227 240.0
CMS1_k127_206118_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 3.642e-256 797.0
CMS1_k127_206118_1 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 433.0
CMS1_k127_206118_2 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000000002021 187.0
CMS1_k127_206118_3 - - - - 0.0000000000000002711 79.0
CMS1_k127_2068871_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 612.0
CMS1_k127_2068871_1 Belongs to the pseudouridine synthase RluA family K06179,K06180 - 5.4.99.23,5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 297.0
CMS1_k127_2068871_2 3-deoxy-d-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000003149 199.0
CMS1_k127_2068871_3 SPTR Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000009885 114.0
CMS1_k127_2128707_0 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.272e-235 734.0
CMS1_k127_2128707_1 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007187 356.0
CMS1_k127_2128707_2 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000001517 203.0
CMS1_k127_2128707_3 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000001205 160.0
CMS1_k127_2158121_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1064.0
CMS1_k127_2158121_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 7.683e-235 731.0
CMS1_k127_2158121_10 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000000000004136 194.0
CMS1_k127_2158121_11 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000007244 196.0
CMS1_k127_2158121_12 - - - - 0.000000000000000000000000000000000000007812 149.0
CMS1_k127_2158121_13 Belongs to the UPF0102 family K07460 - - 0.000000000000000000000000000000000005563 139.0
CMS1_k127_2158121_14 Protein conserved in bacteria - - - 0.00000000000000000000000000000000007972 143.0
CMS1_k127_2158121_15 Binds the 23S rRNA K02909 - - 0.00000000000000000000000001084 110.0
CMS1_k127_2158121_2 Aminotransferase K14261 - - 6.793e-207 648.0
CMS1_k127_2158121_3 homoserine dehydrogenase K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 610.0
CMS1_k127_2158121_4 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 502.0
CMS1_k127_2158121_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 373.0
CMS1_k127_2158121_6 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006097 298.0
CMS1_k127_2158121_7 Short-chain dehydrogenase reductase sdr - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007303 262.0
CMS1_k127_2158121_8 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000001821 253.0
CMS1_k127_2158121_9 - - - - 0.0000000000000000000000000000000000000000000000000000002051 203.0
CMS1_k127_2165981_0 Transglutaminase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003615 281.0
CMS1_k127_2165981_1 surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003231 272.0
CMS1_k127_2173217_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 6.174e-197 618.0
CMS1_k127_2173217_1 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 399.0
CMS1_k127_2173217_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 336.0
CMS1_k127_2173217_3 domain protein K09944 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 336.0
CMS1_k127_2173217_4 D-alanyl-D-alanine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006053 246.0
CMS1_k127_2187505_0 MMPL family K07003 - - 6.242e-269 850.0
CMS1_k127_2187505_1 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003378 338.0
CMS1_k127_2187505_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 305.0
CMS1_k127_2187505_3 (Lipo)protein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002408 261.0
CMS1_k127_2187505_4 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000000000000000000001826 186.0
CMS1_k127_2187505_5 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000000000000000001855 182.0
CMS1_k127_2187505_6 ABC-type transport system involved in resistance to organic solvents auxiliary component K07323 - - 0.000000000000000000000000000000000000000001234 163.0
CMS1_k127_2187505_7 Receptor - - - 0.00000000000000000000000000000000000000878 148.0
CMS1_k127_2187505_8 COG2143 Thioredoxin-related protein K04084 - 1.8.1.8 0.0000000000000000000008906 100.0
CMS1_k127_2194990_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 524.0
CMS1_k127_2194990_1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.0000000000000000000000000406 109.0
CMS1_k127_2194990_2 - - - - 0.0000000000000001152 85.0
CMS1_k127_219502_0 Histidine kinase K13040 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000004129 210.0
CMS1_k127_219502_1 Permease - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000000000000842 170.0
CMS1_k127_219502_2 - - - - 0.000000000001693 72.0
CMS1_k127_2197932_0 fructose-bisphosphate aldolase K01624 - 4.1.2.13 7.219e-195 611.0
CMS1_k127_2197932_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 456.0
CMS1_k127_2197932_2 Histidine kinase K20972 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002138 284.0
CMS1_k127_2197932_3 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000004302 256.0
CMS1_k127_2197932_4 1-aminocyclopropane-1-carboxylate deaminase K01505 - 3.5.99.7 0.000000000000000000000000000000000000000000000000000000000000001095 229.0
CMS1_k127_2197932_5 peptidylprolyl isomerase K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000003058 222.0
CMS1_k127_2232727_0 PFAM Formylglycine-generating sulfatase enzyme - - - 1.591e-251 794.0
CMS1_k127_2232727_1 Cystathionine beta-lyase K14155 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 328.0
CMS1_k127_2232727_2 PFAM metal-dependent phosphohydrolase, HD sub domain K01120 - 3.1.4.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006251 271.0
CMS1_k127_2232727_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000004248 79.0
CMS1_k127_2321617_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.000000000000000000000000000000000000000000000000000000000000000000205 237.0
CMS1_k127_2321617_1 GatB Yqey family protein K09117 - - 0.0000000000000000000000000000000000000000000002299 171.0
CMS1_k127_2321617_2 Na+/Pi-cotransporter K03324 - - 0.00008123 52.0
CMS1_k127_2323548_0 RNA binding S1 domain protein K06959 - - 0.0 1022.0
CMS1_k127_2323548_1 Archaea bacterial proteins of unknown function K06921 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 301.0
CMS1_k127_2342868_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 9.516e-230 715.0
CMS1_k127_2342868_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 608.0
CMS1_k127_2342868_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 488.0
CMS1_k127_2342868_3 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 331.0
CMS1_k127_2342868_4 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003075 271.0
CMS1_k127_2342868_5 peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000002872 216.0
CMS1_k127_2342868_6 - - - - 0.000000000000000000000000000000000000058 145.0
CMS1_k127_2342868_7 ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000002681 105.0
CMS1_k127_2386632_0 Methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000003044 230.0
CMS1_k127_2386632_1 PAS domain - - - 0.000000000000000000000001035 104.0
CMS1_k127_2406009_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 539.0
CMS1_k127_2406009_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - 0.0000000000000000000000003561 116.0
CMS1_k127_2421726_0 chemotaxis protein K03407 - 2.7.13.3 0.0 1050.0
CMS1_k127_2421726_1 intermembrane lipid transfer K06192 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0009987,GO:0010876,GO:0016020,GO:0016021,GO:0016043,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0042597,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071840,GO:0071944,GO:0120009 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009276 492.0
CMS1_k127_2421726_10 involved in molybdopterin and thiamine biosynthesis family 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004211 275.0
CMS1_k127_2421726_11 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009155 252.0
CMS1_k127_2421726_12 Flagellar Assembly Protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000008223 251.0
CMS1_k127_2421726_13 chemotaxis protein K03408 - - 0.00000000000000000000000000000000000000000000000000000000000000009138 225.0
CMS1_k127_2421726_14 NHL repeat - - - 0.0000000000000000000000000000000000000000000000000000000000001427 228.0
CMS1_k127_2421726_15 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000003955 209.0
CMS1_k127_2421726_16 PFAM PAS fold-3 domain protein K03776 - - 0.0000000000000000000000000000000000000000000000000000000191 198.0
CMS1_k127_2421726_17 response to heat K03808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000001103 201.0
CMS1_k127_2421726_18 Domain of unknown function (DUF3943) - - - 0.0000000000000000000000000000000000000000000000000001574 196.0
CMS1_k127_2421726_19 - - - - 0.00000000000000000000000000000000000000000000000001101 186.0
CMS1_k127_2421726_2 PFAM peptidase M48 Ste24p K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004147 455.0
CMS1_k127_2421726_20 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000001205 160.0
CMS1_k127_2421726_21 protein conserved in bacteria K03269 - 3.6.1.54 0.00000000000000000000000000000000000000002114 162.0
CMS1_k127_2421726_22 - - - - 0.000000000000000000000000000000000005791 139.0
CMS1_k127_2421726_23 spectrin binding - - - 0.000000000000000000000000000000004305 144.0
CMS1_k127_2421726_24 COGs COG1252 NADH dehydrogenase FAD-containing subunit K17218 - 1.8.5.4 0.0000000000000000000000003565 104.0
CMS1_k127_2421726_25 paraquat-inducible protein A K03808 - - 0.000000000000000000002857 101.0
CMS1_k127_2421726_26 - - - - 0.000000000003309 74.0
CMS1_k127_2421726_27 - - - - 0.0000000009289 61.0
CMS1_k127_2421726_28 OmpA family - - - 0.0000001129 64.0
CMS1_k127_2421726_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 429.0
CMS1_k127_2421726_4 chemotaxis protein K03415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006322 412.0
CMS1_k127_2421726_5 Methylenetetrahydrofolate reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 407.0
CMS1_k127_2421726_6 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 345.0
CMS1_k127_2421726_7 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 343.0
CMS1_k127_2421726_8 phosphoserine phosphatase K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 321.0
CMS1_k127_2421726_9 methyl-accepting chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 329.0
CMS1_k127_2501864_0 transporter K14445 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004425 434.0
CMS1_k127_2501864_1 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000001863 156.0
CMS1_k127_2501864_2 PFAM phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000002375 121.0
CMS1_k127_2531673_0 protein secretion by the type I secretion system K12541 - - 6.56e-212 669.0
CMS1_k127_2531673_1 Pas domain K02022,K12542 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 382.0
CMS1_k127_2531673_2 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000002703 104.0
CMS1_k127_2531673_3 domain, Protein K01179,K01218,K03112,K18197 GO:0003674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0030428,GO:0032153,GO:0042834,GO:0044464,GO:0097367 3.2.1.4,3.2.1.78,4.2.2.23 0.000000001451 66.0
CMS1_k127_2562979_0 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006361 277.0
CMS1_k127_2562979_1 Belongs to the MtfA family K09933 - - 0.0000000000000000000000000000000000000000000000000000001102 202.0
CMS1_k127_2562979_2 PFAM Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000000000000000000000000000000006109 182.0
CMS1_k127_2562979_3 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000000000000000009194 151.0
CMS1_k127_2562979_4 - - - - 0.0000000000000004065 83.0
CMS1_k127_257416_0 rod shape-determining protein mreB K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 580.0
CMS1_k127_257416_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 558.0
CMS1_k127_257416_2 Rod shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000314 248.0
CMS1_k127_257416_3 HD domain - - - 0.0000000000000000002048 88.0
CMS1_k127_2580163_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 528.0
CMS1_k127_2580163_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 389.0
CMS1_k127_2580163_2 PAS fold K03776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 390.0
CMS1_k127_2580163_3 PFAM ATP-binding region, ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001592 236.0
CMS1_k127_2580163_4 GGDEF domain - GO:0003674,GO:0003824,GO:0008081,GO:0016787,GO:0016788,GO:0042578,GO:0071111 - 0.0000000000000000000000000000000000000000000000000000000000003391 227.0
CMS1_k127_2580163_5 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.00000000000000000000000000000000000000000000000000000000002885 209.0
CMS1_k127_2580163_6 Histidine kinase K03407 - 2.7.13.3 0.0000000000000007703 81.0
CMS1_k127_2616546_0 Type I secretion system ATPase K12541 - - 7.821e-259 816.0
CMS1_k127_2616546_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 475.0
CMS1_k127_2616546_10 helix_turn_helix, Lux Regulon - - - 0.00000000000002608 79.0
CMS1_k127_2616546_2 type I secretion membrane fusion protein, HlyD family K02022,K12542 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 452.0
CMS1_k127_2616546_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 374.0
CMS1_k127_2616546_4 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 334.0
CMS1_k127_2616546_5 Outer membrane efflux protein K12543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 320.0
CMS1_k127_2616546_6 COGs COG1120 ABC-type cobalamin Fe3 -siderophores transport systems ATPase components K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000001739 226.0
CMS1_k127_2616546_7 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.000000000000000000000000000000000000000000000000002512 189.0
CMS1_k127_2616546_8 Cadherin repeats. - - - 0.000000000000000000000001681 121.0
CMS1_k127_2616546_9 Protein of unknown function (DUF1566) - - - 0.00000000000000000001153 109.0
CMS1_k127_2624655_0 bacterial-type flagellum assembly - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009395 434.0
CMS1_k127_2624655_1 - K07341 - - 0.0000000000000000000000000000000000000000000000000000000000002288 214.0
CMS1_k127_2624655_2 PFAM Eco57I restriction endonuclease - - - 0.0000000000000000000000000000001363 126.0
CMS1_k127_2652218_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 464.0
CMS1_k127_2652218_1 PFAM FecR protein - - - 0.00000000000000709 84.0
CMS1_k127_2677795_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 4.308e-216 676.0
CMS1_k127_2677795_1 Belongs to the 'phage' integrase family K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006279 284.0
CMS1_k127_2677795_2 protein conserved in bacteria K09778 - - 0.000000000000000000000000000000000000000000000000000000000000005087 222.0
CMS1_k127_2677795_3 - - - - 0.000000000000000000000000001709 117.0
CMS1_k127_2677795_4 - - - - 0.00000000000000000826 92.0
CMS1_k127_2681290_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 426.0
CMS1_k127_2681290_1 lytic murein transglycosylase K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 433.0
CMS1_k127_2681290_2 YGGT family K02221 - - 0.000000000000000000000000002373 114.0
CMS1_k127_2685921_0 Methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005008 304.0
CMS1_k127_2685921_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000002806 190.0
CMS1_k127_2685921_2 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000005894 164.0
CMS1_k127_2706049_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 1.069e-264 823.0
CMS1_k127_2706049_1 ribosomal protein S1 K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007909 503.0
CMS1_k127_2706049_2 - - - - 0.0002362 49.0
CMS1_k127_2719343_0 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 8.359e-222 715.0
CMS1_k127_2719343_1 COG3893 inactivated superfamily I helicase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 582.0
CMS1_k127_2719343_2 FixH - - - 0.00000000000000000000000006321 113.0
CMS1_k127_2719343_3 - - - - 0.000000000000000000003545 98.0
CMS1_k127_2735595_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1894.0
CMS1_k127_2735595_1 sulfate adenylyltransferase K00958 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002949 548.0
CMS1_k127_2735595_10 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) - - - 0.00000000000000000000006415 109.0
CMS1_k127_2735595_11 Two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.0000000118 66.0
CMS1_k127_2735595_2 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 383.0
CMS1_k127_2735595_3 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 377.0
CMS1_k127_2735595_4 component of anaerobic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 287.0
CMS1_k127_2735595_5 4Fe-4S ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000000004419 205.0
CMS1_k127_2735595_6 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000000000000000000000000000002252 176.0
CMS1_k127_2735595_7 - - - - 0.0000000000000000000000000000000000000000000002059 172.0
CMS1_k127_2735595_8 TIGRFAM Diguanylate cyclase K02030,K03320 - - 0.0000000000000000000000000000000000000000004022 172.0
CMS1_k127_2735595_9 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000001431 119.0
CMS1_k127_2753568_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 1.722e-220 708.0
CMS1_k127_2753568_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000876 598.0
CMS1_k127_2753568_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 497.0
CMS1_k127_2753568_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 393.0
CMS1_k127_2753568_4 Hit family K02503 - - 0.000000000000000000000000000000000000000000000005886 176.0
CMS1_k127_2753568_5 ribosomal protein S1 K02945 - - 0.0000000000000000003146 91.0
CMS1_k127_2760282_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 2.391e-197 619.0
CMS1_k127_2760282_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 607.0
CMS1_k127_2760282_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 602.0
CMS1_k127_2760282_3 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 393.0
CMS1_k127_2760282_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000000000000000000007861 149.0
CMS1_k127_2760282_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000003568 92.0
CMS1_k127_2766021_0 Cysteine desulfurase K04487 - 2.8.1.7 3.459e-223 695.0
CMS1_k127_2766021_1 ATP synthase K02412 - 3.6.3.14 2.644e-203 640.0
CMS1_k127_2766021_2 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006598 552.0
CMS1_k127_2766021_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006265 494.0
CMS1_k127_2766021_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 404.0
CMS1_k127_2766021_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008818 333.0
CMS1_k127_2766021_6 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007395 307.0
CMS1_k127_2766021_7 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 312.0
CMS1_k127_2766021_8 Histidine kinase K00936,K07315,K07679,K20977 - 2.7.13.3,3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000002609 258.0
CMS1_k127_2766021_9 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000001853 216.0
CMS1_k127_2783606_0 Signal transducing histidine kinase, homodimeric domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 402.0
CMS1_k127_2783606_1 NUBPL iron-transfer P-loop NTPase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005537 319.0
CMS1_k127_2783606_2 COG0835 Chemotaxis signal transduction protein - - - 0.0000000000000000000002615 106.0
CMS1_k127_2783606_3 GGDEF domain K03413 - - 0.000000004561 58.0
CMS1_k127_2795366_0 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007434 466.0
CMS1_k127_2795366_1 Protein of unknown function (DUF420) K08976 - - 0.0000000000000000000000000000000000000006725 153.0
CMS1_k127_2795366_2 - - - - 0.000000000000000000000000000008172 124.0
CMS1_k127_2795668_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.322e-272 844.0
CMS1_k127_2795668_1 involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005845 430.0
CMS1_k127_2795668_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 390.0
CMS1_k127_2795668_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 372.0
CMS1_k127_2795668_4 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004449 267.0
CMS1_k127_2795668_5 biotin acetyl-CoA-carboxylase ligase K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000001104 213.0
CMS1_k127_2795668_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000001118 147.0
CMS1_k127_2795668_7 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000002935 140.0
CMS1_k127_2795668_8 Belongs to the ATPase B chain family K02109 - - 0.00000000000000000000000000000003663 130.0
CMS1_k127_2797123_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000002402 236.0
CMS1_k127_2797123_1 PFAM EAL domain protein - - - 0.00000000000000000000000000000000000000000000000000006514 200.0
CMS1_k127_2797123_2 Major facilitator superfamily K08167 - - 0.0000000000000000000000000009612 115.0
CMS1_k127_2797216_0 Belongs to the DEAD box helicase family K05592 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.6.4.13 1.222e-203 645.0
CMS1_k127_2797216_1 (HIT) family - - - 0.000000000000000000000000000000000000000000006759 166.0
CMS1_k127_2797216_2 Histone H1 - - - 0.00000003327 58.0
CMS1_k127_2798514_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 567.0
CMS1_k127_2798514_2 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003574 499.0
CMS1_k127_2798514_3 COGs COG4087 Soluble P-type ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000009166 228.0
CMS1_k127_2798514_4 PFAM DTW domain containing protein - - - 0.0000000000000000000000000000004435 127.0
CMS1_k127_2798514_5 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000003284 101.0
CMS1_k127_2798514_6 - - - - 0.00000000000000000146 89.0
CMS1_k127_2798514_7 Tfp pilus assembly protein FimV - - - 0.00000001867 63.0
CMS1_k127_2806230_0 fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 2.406e-310 957.0
CMS1_k127_2806230_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240,K00245 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 481.0
CMS1_k127_2806230_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 300.0
CMS1_k127_2806230_3 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 - 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000001013 254.0
CMS1_k127_2811069_0 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 419.0
CMS1_k127_2811069_1 Histidine kinase K02482,K07710 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 385.0
CMS1_k127_2811069_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 377.0
CMS1_k127_2811069_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009236 304.0
CMS1_k127_2811069_4 Methyltransferase type 11 K07755 - 2.1.1.137 0.000000000000000000000000000000000000001538 149.0
CMS1_k127_2811069_6 - - - - 0.00000000000000000000000000002589 120.0
CMS1_k127_2811069_7 - - - - 0.00000009611 60.0
CMS1_k127_2821839_0 - - - - 0.0000000000000000000000000000000000000000002486 159.0
CMS1_k127_2821839_2 - - - - 0.00000000000000000000000000000000002474 143.0
CMS1_k127_2821839_3 Rhodanese Homology Domain - - - 0.000000000000000000000000884 108.0
CMS1_k127_2822451_0 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 530.0
CMS1_k127_2822451_1 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003211 370.0
CMS1_k127_2822451_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 291.0
CMS1_k127_2822451_3 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000000001844 176.0
CMS1_k127_2824537_0 PAS domain - - - 0.00000000000000000000000000002478 132.0
CMS1_k127_2824537_1 Protein of unknown function DUF89 K09116 - - 0.0000000000517 64.0
CMS1_k127_2826870_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 575.0
CMS1_k127_2826870_1 - - - - 0.00000002172 59.0
CMS1_k127_2842246_0 ABC-type multidrug transport system ATPase K01990 - - 0.000000000000000001022 90.0
CMS1_k127_2842599_0 ATP-dependent CLP protease ATP-binding subunit K03694 - - 2.065e-297 928.0
CMS1_k127_2842599_1 Ammonium Transporter K03320 - - 1.396e-201 633.0
CMS1_k127_2842599_10 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000003859 231.0
CMS1_k127_2842599_11 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.000000000000000000000000000000000000000000000000000000000161 209.0
CMS1_k127_2842599_12 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0003674,GO:0003824,GO:0004141,GO:0016874,GO:0016879,GO:0016882 6.3.3.3 0.000000000000000000000000000000000000000000000000000000001116 207.0
CMS1_k127_2842599_13 sensor protein - - - 0.000000000000000000000000000000000000000000000000000000001215 204.0
CMS1_k127_2842599_14 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000000000000000000000000000000000000000000004062 188.0
CMS1_k127_2842599_15 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000009007 141.0
CMS1_k127_2842599_16 MOSC domain - - - 0.000000000000000000000000000000000006185 143.0
CMS1_k127_2842599_17 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000007761 144.0
CMS1_k127_2842599_18 - - - - 0.0000000000000000000000000000000007559 134.0
CMS1_k127_2842599_19 - - - - 0.00000000000000000005365 91.0
CMS1_k127_2842599_2 Ammonium Transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 577.0
CMS1_k127_2842599_20 Prokaryotic metallothionein K06950 - - 0.0000000003311 63.0
CMS1_k127_2842599_21 prephenate dehydrogenase K04517 - 1.3.1.12 0.00006711 46.0
CMS1_k127_2842599_3 O-acetylhomoserine sulfhydrylase K01740 - 2.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009606 553.0
CMS1_k127_2842599_4 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 526.0
CMS1_k127_2842599_5 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 482.0
CMS1_k127_2842599_6 chemotaxis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 312.0
CMS1_k127_2842599_7 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001113 282.0
CMS1_k127_2842599_8 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000001023 258.0
CMS1_k127_2842599_9 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001861 248.0
CMS1_k127_2843892_0 Co Zn Cd efflux system component K16264 - - 0.00000000000000000000000000000000000000000000000000000005465 203.0
CMS1_k127_2843892_1 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000002397 165.0
CMS1_k127_2843892_2 Protein of unknown function (DUF3584) - - - 0.0000000000000000000000000000000002351 149.0
CMS1_k127_2843892_3 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000233 133.0
CMS1_k127_2843892_4 Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues - - - 0.00000000000000000000000005482 123.0
CMS1_k127_2843892_5 Rubredoxin-type Fe(Cys)4 protein - - - 0.000000000000000000005552 94.0
CMS1_k127_2843892_6 regulation of response to stimulus K01406,K13730 - 3.4.24.40 0.00000000000000004477 95.0
CMS1_k127_2865195_0 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 1.899e-294 918.0
CMS1_k127_2865195_1 7 transmembrane helices usually fused to an inactive transglutaminase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 407.0
CMS1_k127_2865195_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 327.0
CMS1_k127_2865195_3 Sugar-transfer associated ATP-grasp - - - 0.00000000000000000000000000000000000000000000000000000000000000000005258 241.0
CMS1_k127_2865195_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000001169 206.0
CMS1_k127_2865195_5 Histidine kinase-like ATPases - - - 0.000000000000000000000005536 116.0
CMS1_k127_2865195_6 phosphorelay sensor kinase activity K13598,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.0000000000000000001667 99.0
CMS1_k127_2865195_7 PFAM TPR repeat-containing protein - - - 0.000005512 59.0
CMS1_k127_2865195_8 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141 - 0.000005631 55.0
CMS1_k127_2865195_9 Bacterial DNA-binding protein - - - 0.0000478 49.0
CMS1_k127_288451_0 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K02584 - - 8.447e-248 775.0
CMS1_k127_288451_1 fumarate reductase, flavoprotein subunit K00239,K00244 - 1.3.5.1,1.3.5.4 2.994e-221 699.0
CMS1_k127_288451_10 flagellar - - - 0.00000000000000000000000000000000000000000000000007805 188.0
CMS1_k127_288451_11 Membrane K08984 - - 0.00000000000000000000000000000000000000000000003086 175.0
CMS1_k127_288451_12 flagellar motor switch protein K02417 - - 0.0000000000000000000000000000000000000000002715 160.0
CMS1_k127_288451_13 Curli production assembly/transport component CsgG - - - 0.000000000000000000000000000000000001638 150.0
CMS1_k127_288451_14 NifQ K15790 - - 0.00000000000000000000000000000002582 129.0
CMS1_k127_288451_15 Belongs to the ArsC family - - - 0.0000000000000000000000000001509 119.0
CMS1_k127_288451_16 nitrogen fixation protein FixT K02593 - - 0.0000000000000000000007516 96.0
CMS1_k127_288451_17 - - - - 0.0000000000000000000008271 99.0
CMS1_k127_288451_2 COG0714 MoxR-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005162 527.0
CMS1_k127_288451_21 aldo keto reductase - - - 0.00009787 45.0
CMS1_k127_288451_22 - - - - 0.0001546 53.0
CMS1_k127_288451_23 ABC-type phosphate transport system, periplasmic component - - - 0.0006313 48.0
CMS1_k127_288451_3 Putative metallopeptidase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 449.0
CMS1_k127_288451_4 His Kinase A (phospho-acceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006477 432.0
CMS1_k127_288451_5 Amino Acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 322.0
CMS1_k127_288451_6 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001508 278.0
CMS1_k127_288451_7 AhpC/TSA family K11065 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002939 272.0
CMS1_k127_288451_8 TIGRFAM SagB-type dehydrogenase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003804 273.0
CMS1_k127_288451_9 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000003048 205.0
CMS1_k127_2902708_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 451.0
CMS1_k127_2902708_1 HDOD domain - GO:0003674,GO:0003824,GO:0004112,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008081,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009187,GO:0009214,GO:0009987,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007641 425.0
CMS1_k127_2902708_2 pyridine nucleotide-disulfide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 406.0
CMS1_k127_2902708_3 SelR domain K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000004923 186.0
CMS1_k127_2902708_4 Chemoreceptor zinc-binding domain - - - 0.0000000000000000000000000000000000000000000000008973 178.0
CMS1_k127_2902708_5 KR domain - - - 0.0000002924 53.0
CMS1_k127_2902708_6 - - - - 0.00002388 49.0
CMS1_k127_2908098_0 COG0474 Cation transport ATPase - - - 6.119e-320 1000.0
CMS1_k127_2908098_1 Transcriptional regulatory protein - - - 0.00000000000000000000000000000000000000002679 154.0
CMS1_k127_2908098_2 Putative thioesterase (yiiD_Cterm) - - - 0.00000000000000000000000000000000008948 137.0
CMS1_k127_2912109_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1236.0
CMS1_k127_2912109_1 ABC transporter K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 477.0
CMS1_k127_2912109_10 PFAM SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000006175 239.0
CMS1_k127_2912109_11 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.00000000000000000000000000000000000000000000001755 174.0
CMS1_k127_2912109_12 Periplasmic Protein - - - 0.00000000000000000000000000000000000000000002468 171.0
CMS1_k127_2912109_13 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000000000000000000000000000000000006687 161.0
CMS1_k127_2912109_14 integral membrane protein - - - 0.0000000000000000000000000000000000000000001125 164.0
CMS1_k127_2912109_15 - - - - 0.00000000000000000005229 92.0
CMS1_k127_2912109_2 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007504 475.0
CMS1_k127_2912109_3 8-amino-7-oxononanoate synthase K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007412 432.0
CMS1_k127_2912109_4 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004031 359.0
CMS1_k127_2912109_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003355 348.0
CMS1_k127_2912109_6 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 334.0
CMS1_k127_2912109_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 297.0
CMS1_k127_2912109_8 abc transporter atp-binding protein K02031,K15587 - 3.6.3.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 284.0
CMS1_k127_2912109_9 nucleotide-binding protein implicated in inhibition of septum formation K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001289 266.0
CMS1_k127_292083_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1093.0
CMS1_k127_292083_1 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 610.0
CMS1_k127_292083_2 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 305.0
CMS1_k127_292083_3 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000034 200.0
CMS1_k127_292083_4 DNA-binding protein - - - 0.00000000000000000000000000000007155 126.0
CMS1_k127_2952689_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.162e-311 965.0
CMS1_k127_2952689_1 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 545.0
CMS1_k127_2952689_10 phosphatidylserine decarboxylase K01613 - 4.1.1.65 0.0000007538 59.0
CMS1_k127_2952689_2 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003902 397.0
CMS1_k127_2952689_3 General glycosylation pathway protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009948 382.0
CMS1_k127_2952689_4 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008747 322.0
CMS1_k127_2952689_5 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 297.0
CMS1_k127_2952689_6 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 300.0
CMS1_k127_2952689_7 lipopolysaccharide heptosyltransferase K02841 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 293.0
CMS1_k127_2952689_8 Chemotaxis protein cheY K03413 - - 0.00000000000000000000000000000000000000000000000000000000000002024 216.0
CMS1_k127_2952689_9 lipid a biosynthesis K02517 - 2.3.1.241 0.000000000000000000000000000000000000000001647 166.0
CMS1_k127_2980817_0 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000323 537.0
CMS1_k127_2980817_1 Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009852 344.0
CMS1_k127_2980817_2 - - - - 0.00000000000000000000000000000000000004014 156.0
CMS1_k127_2980817_3 - - - - 0.00000000000000000000000000000005966 132.0
CMS1_k127_2980817_4 Belongs to the ArsC family - - - 0.0000000000000000000000000000002033 127.0
CMS1_k127_2980817_5 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000002958 122.0
CMS1_k127_2980817_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000002196 91.0
CMS1_k127_2989328_0 COG0402 Cytosine deaminase and related metal-dependent K20810 - 3.5.4.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007717 358.0
CMS1_k127_2989328_1 signal peptide peptidase SppA, 36K type K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004115 285.0
CMS1_k127_2989328_2 protein ubiquitination K15502,K15503 - - 0.000000000000000000002659 108.0
CMS1_k127_2989328_3 ABC transporter, phosphonate, periplasmic substrate-binding protein K13040 - 2.7.13.3 0.000000000000761 73.0
CMS1_k127_2990626_0 Protein of unknown function (DUF1538) - - - 5.622e-266 829.0
CMS1_k127_2990626_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 545.0
CMS1_k127_2990626_10 Protein of unknown function (DUF2393) - - - 0.000000000000000000009735 98.0
CMS1_k127_2990626_11 - - - - 0.0000000000000002669 82.0
CMS1_k127_2990626_12 Protein of unknown function (DUF2393) - - - 0.00000000007262 69.0
CMS1_k127_2990626_13 Protein of unknown function (DUF2393) - - - 0.0000001343 59.0
CMS1_k127_2990626_14 of the cytoplasmic domain of flagellar protein FhlB K04061 - - 0.0001209 45.0
CMS1_k127_2990626_2 Radical SAM protein K07139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005785 445.0
CMS1_k127_2990626_3 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005086 424.0
CMS1_k127_2990626_4 Histidine biosynthesis bifunctional protein hisIE K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 325.0
CMS1_k127_2990626_5 riboflavin synthase alpha K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002687 272.0
CMS1_k127_2990626_6 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000001778 228.0
CMS1_k127_2990626_7 COG2346 Truncated hemoglobins K06886 - - 0.0000000000000000000000000000000000000000000000000000000000000937 215.0
CMS1_k127_2990626_8 Belongs to the P(II) protein family - - - 0.00000000000000000000000000000000000000000000000005628 180.0
CMS1_k127_2990626_9 Protein of unknown function (DUF2393) - - - 0.0000000000000000000000006693 111.0
CMS1_k127_2992591_0 CHASE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 372.0
CMS1_k127_2992591_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009191 280.0
CMS1_k127_2994716_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 3.821e-235 730.0
CMS1_k127_2994716_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006772 601.0
CMS1_k127_2994716_10 Binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000004111 177.0
CMS1_k127_2994716_11 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000002823 162.0
CMS1_k127_2994716_12 flagellar protein FliS K02422 - - 0.0000000000000000000000000000000000000009621 151.0
CMS1_k127_2994716_13 Cytochrome P460 - - - 0.000000000000000000000000000000000000003318 151.0
CMS1_k127_2994716_14 - - - - 0.0000000000000000000000000000000000008204 147.0
CMS1_k127_2994716_15 proteins homologs of microcin C7 resistance protein MccF - - - 0.000000000000000000000000001194 115.0
CMS1_k127_2994716_17 - - - - 0.0000000846 56.0
CMS1_k127_2994716_18 morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 GO:0001539,GO:0005575,GO:0005576,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.00001734 49.0
CMS1_k127_2994716_2 Type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 509.0
CMS1_k127_2994716_3 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 396.0
CMS1_k127_2994716_4 C-terminal domain of metallo-carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 400.0
CMS1_k127_2994716_5 Pilus assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 371.0
CMS1_k127_2994716_6 PFAM Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003683 351.0
CMS1_k127_2994716_7 ATPase (AAA K01714,K12283 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009684 305.0
CMS1_k127_2994716_8 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 301.0
CMS1_k127_2994716_9 ErfK YbiS YcfS YnhG family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009016 294.0
CMS1_k127_3007590_0 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000004279 237.0
CMS1_k127_3007590_1 PhoQ Sensor - - - 0.00000000000002891 74.0
CMS1_k127_3014964_0 GHKL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 393.0
CMS1_k127_3014964_1 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 361.0
CMS1_k127_3014964_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 323.0
CMS1_k127_3014964_3 Histidine kinase K11527,K20973 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007508 313.0
CMS1_k127_3015424_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 8.171e-225 699.0
CMS1_k127_3015424_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000002047 234.0
CMS1_k127_3015424_2 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000001903 213.0
CMS1_k127_3015424_3 metal-binding, possibly nucleic acid-binding protein - - - 0.0000000000000000000000001976 109.0
CMS1_k127_3015424_4 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000003721 87.0
CMS1_k127_3015424_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000009478 77.0
CMS1_k127_3015424_6 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.000000005053 57.0
CMS1_k127_3026104_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K14086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003628 493.0
CMS1_k127_3026104_1 EAL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008505 408.0
CMS1_k127_3026104_2 protein conserved in bacteria K08682 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0008770,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016788,GO:0019752,GO:0032787,GO:0042578,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:0140096,GO:1901576 3.1.4.14 0.00000000000000000000000000000136 128.0
CMS1_k127_3026104_3 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000002031 91.0
CMS1_k127_3046027_0 Belongs to the DNA mismatch repair MutS family K03555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 400.0
CMS1_k127_3046027_1 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000007939 117.0
CMS1_k127_3077195_0 - - - - 0.0 1091.0
CMS1_k127_3077195_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.414e-289 898.0
CMS1_k127_3077195_10 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005295 535.0
CMS1_k127_3077195_11 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 528.0
CMS1_k127_3077195_12 Chorismate mutase prephenate dehydratase K14170 - 4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007423 523.0
CMS1_k127_3077195_13 flagellar motor switch protein K02410 GO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 504.0
CMS1_k127_3077195_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007978 460.0
CMS1_k127_3077195_15 COG0348 Polyferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000938 455.0
CMS1_k127_3077195_16 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 456.0
CMS1_k127_3077195_17 HD domain K07814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 421.0
CMS1_k127_3077195_18 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 414.0
CMS1_k127_3077195_19 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 400.0
CMS1_k127_3077195_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K13378 - 1.6.5.3 1.136e-226 715.0
CMS1_k127_3077195_20 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 370.0
CMS1_k127_3077195_21 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 374.0
CMS1_k127_3077195_22 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 362.0
CMS1_k127_3077195_23 permease K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 327.0
CMS1_k127_3077195_24 HAD-superfamily hydrolase, subfamily IIA K02566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007165 297.0
CMS1_k127_3077195_25 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000003787 262.0
CMS1_k127_3077195_26 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009478 246.0
CMS1_k127_3077195_27 HPP family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009858 243.0
CMS1_k127_3077195_28 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000000000000000000001844 239.0
CMS1_k127_3077195_29 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000001101 228.0
CMS1_k127_3077195_3 phosphomannomutase K15778 - 5.4.2.2,5.4.2.8 7.816e-209 657.0
CMS1_k127_3077195_30 Belongs to the peptidase S41A family - - - 0.00000000000000000000000000000000000000000000000000000000000000005859 232.0
CMS1_k127_3077195_31 Domain of unknown function (DUF4395) - - - 0.000000000000000000000000000000000000000000000000000000000007208 213.0
CMS1_k127_3077195_32 NADH-quinone oxidoreductase K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000121 205.0
CMS1_k127_3077195_33 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000002564 199.0
CMS1_k127_3077195_34 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000005051 198.0
CMS1_k127_3077195_35 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000108 200.0
CMS1_k127_3077195_36 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000001176 194.0
CMS1_k127_3077195_37 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000008548 185.0
CMS1_k127_3077195_38 Biopolymer transporter ExbB K03561 - - 0.00000000000000000000000000000000000000000001876 166.0
CMS1_k127_3077195_39 Dinitrogenase iron-molybdenum cofactor biosynthesis protein K02596 - - 0.00000000000000000000000000000000000000001735 156.0
CMS1_k127_3077195_4 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 5.05e-199 625.0
CMS1_k127_3077195_40 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.0000000000000000000000000000000000000003158 154.0
CMS1_k127_3077195_41 - - - - 0.0000000000000000000000000000000000000009305 154.0
CMS1_k127_3077195_42 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000002707 140.0
CMS1_k127_3077195_43 flagellar assembly protein FliH K02411 - - 0.000000000000000000000000000000001427 140.0
CMS1_k127_3077195_44 biopolymer transport protein K03559 - - 0.0000000000000000000000000004197 117.0
CMS1_k127_3077195_45 Transcriptional regulator, ModE family K02019 - - 0.000000000000000000000000001573 114.0
CMS1_k127_3077195_46 - - - - 0.000000000000000000005194 96.0
CMS1_k127_3077195_47 cyclic nucleotide binding K21828 GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000001847 94.0
CMS1_k127_3077195_48 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000004746 84.0
CMS1_k127_3077195_5 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009428 611.0
CMS1_k127_3077195_6 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 595.0
CMS1_k127_3077195_7 Oxidoreductase K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 571.0
CMS1_k127_3077195_8 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 572.0
CMS1_k127_3077195_9 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009901 569.0
CMS1_k127_3082893_0 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000002953 223.0
CMS1_k127_3082893_2 Glycosyl hydrolases family 25 - - - 0.00003299 53.0
CMS1_k127_3096538_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0 1018.0
CMS1_k127_3096538_1 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 368.0
CMS1_k127_3096538_2 Ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000046 229.0
CMS1_k127_3096538_3 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000006452 220.0
CMS1_k127_3096538_4 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000002149 125.0
CMS1_k127_3096538_5 PDZ domain - - - 0.0000000000000000000000000000165 130.0
CMS1_k127_3096538_6 that it carries out the mismatch recognition step. This protein has a weak ATPase activity - - - 0.000000000000002826 86.0
CMS1_k127_3099214_0 Belongs to the peptidase S41A family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001247 291.0
CMS1_k127_3108734_0 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 329.0
CMS1_k127_3108734_1 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002248 248.0
CMS1_k127_3108734_2 PFAM O-Antigen K02847 - - 0.00000000000244 76.0
CMS1_k127_3132796_0 Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- amino-6-oxopimelate using succinyl-CoA K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007069 553.0
CMS1_k127_3132796_1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 369.0
CMS1_k127_3132796_2 phage repressor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 310.0
CMS1_k127_3132796_3 Ankyrin repeat - - - 0.000000000000000000000000000000000001424 146.0
CMS1_k127_3152551_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 3.8e-225 707.0
CMS1_k127_3152551_1 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 418.0
CMS1_k127_31717_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1204.0
CMS1_k127_31717_1 Lipopolysaccharide-assembly - - - 0.000000000000000000000000000000000000578 145.0
CMS1_k127_3206765_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004746 435.0
CMS1_k127_3206765_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006594 429.0
CMS1_k127_3206765_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 365.0
CMS1_k127_3206765_3 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000118 185.0
CMS1_k127_3206765_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.000000000000000000000008365 106.0
CMS1_k127_3206765_5 DNA protecting protein DprA K04096 - - 0.00000000000000000664 86.0
CMS1_k127_321774_0 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 350.0
CMS1_k127_321774_1 Protein of unknown function (DUF465) K09794 - - 0.000000000000000162 81.0
CMS1_k127_321774_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000001915 55.0
CMS1_k127_321774_3 Belongs to the DegT DnrJ EryC1 family K15895 - 2.6.1.92 0.00001712 55.0
CMS1_k127_3220469_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 610.0
CMS1_k127_3220469_1 dihydropteroate synthase K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 444.0
CMS1_k127_3220469_2 DNA replication regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000008685 223.0
CMS1_k127_3220469_3 DNA polymerase III K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000003222 168.0
CMS1_k127_3220469_4 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000001149 50.0
CMS1_k127_323764_0 DNA helicase K03657 - 3.6.4.12 1.303e-305 949.0
CMS1_k127_323764_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 8.075e-202 643.0
CMS1_k127_323764_2 Type II secretion system K02455,K12278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 461.0
CMS1_k127_323764_3 proteins homologs of microcin C7 resistance protein MccF - - - 0.00006513 47.0
CMS1_k127_323764_4 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.00009728 45.0
CMS1_k127_323876_0 hydrogenase (NiFe) small subunit HydA K05927 - 1.12.5.1 0.0 1144.0
CMS1_k127_323876_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K05922 - 1.12.5.1 1.437e-308 951.0
CMS1_k127_323876_10 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.00000000000009402 77.0
CMS1_k127_323876_2 Belongs to the HypD family K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 560.0
CMS1_k127_323876_3 hydrogenase expression formation protein K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 443.0
CMS1_k127_323876_4 Hydrogenase K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 372.0
CMS1_k127_323876_5 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 313.0
CMS1_k127_323876_6 2-keto-4-pentenoate hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004269 277.0
CMS1_k127_323876_7 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.000000000000000000000000000000000000000000000000000005666 196.0
CMS1_k127_323876_8 Hydrogenase/urease nickel incorporation, metallochaperone, hypA K04651 - - 0.000000000000000000000000000000000005314 139.0
CMS1_k127_323876_9 hydrogenase assembly chaperone HypC K04653 - - 0.0000000000000000000000000004035 114.0
CMS1_k127_3241032_0 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 9.941e-257 798.0
CMS1_k127_3241032_1 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007488 584.0
CMS1_k127_3241032_11 - - - - 0.0000003612 55.0
CMS1_k127_3241032_2 LacY proton/sugar symporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 539.0
CMS1_k127_3241032_3 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 301.0
CMS1_k127_3241032_4 Protein of unknown function (DUF1722) K13281 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001614 280.0
CMS1_k127_3241032_5 PFAM dUTPase - - - 0.0000000000000000000000000000000000000000000000000000000003367 209.0
CMS1_k127_3241032_6 HDOD domain - GO:0003674,GO:0003824,GO:0004112,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008081,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009187,GO:0009214,GO:0009987,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 - 0.000000000000000000000000000000000000000000000000002674 185.0
CMS1_k127_3241032_7 - - - - 0.00000000000000000000000000000000000000000000000001382 181.0
CMS1_k127_3241032_8 - - - - 0.0000000000000000000000000000000000000007621 152.0
CMS1_k127_3241032_9 -acetyltransferase K06975 - - 0.0000000000000000000000000000000005088 134.0
CMS1_k127_3242406_0 Cell division protein FtsI penicillin-binding protein K03587 - 3.4.16.4 1.198e-194 623.0
CMS1_k127_3242406_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 569.0
CMS1_k127_3242406_2 Histidine kinase K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006609 372.0
CMS1_k127_3242406_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003614 339.0
CMS1_k127_3242406_4 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000115 265.0
CMS1_k127_3242406_5 Diguanylate cyclase (GGDEF) domain - - - 0.00000000000000000000000000000000000000000000000000000000000005035 235.0
CMS1_k127_3242406_6 Flagellar hook-basal body complex protein FliE K02408 - - 0.0000000000000000000000000000005502 124.0
CMS1_k127_3242406_7 - - - - 0.000004655 54.0
CMS1_k127_3253665_0 MiaB-like tRNA modifying enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004707 572.0
CMS1_k127_3253665_1 Belongs to the AAA ATPase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 475.0
CMS1_k127_3253665_2 Molybdenum cofactor biosynthesis protein K03831 - 2.7.7.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006828 301.0
CMS1_k127_3253665_3 mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005115 281.0
CMS1_k127_3253665_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000009595 212.0
CMS1_k127_3253665_5 carboxylic ester hydrolase activity - - - 0.000000000000000000000000000000000000000000104 166.0
CMS1_k127_3253665_6 Thioesterase K07107 - - 0.0000000000000000000000000003727 118.0
CMS1_k127_3253665_7 - - - - 0.00002597 51.0
CMS1_k127_3255118_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 7.559e-209 656.0
CMS1_k127_3255118_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000715 298.0
CMS1_k127_3255118_2 PFAM Fimbrial assembly family protein - - - 0.00000000000000000000000000000000000001187 150.0
CMS1_k127_3255118_3 - - - - 0.000000000000000000000001303 110.0
CMS1_k127_3255118_4 esterase of the alpha beta hydrolase fold K07002 - - 0.00000000000000000000001067 107.0
CMS1_k127_3255118_5 - - - - 0.00000000001862 70.0
CMS1_k127_3256751_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001962 230.0
CMS1_k127_3256751_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000002361 216.0
CMS1_k127_3256751_2 Thioredoxin K03671 - - 0.00000000000000000000000000000000000000000000007693 171.0
CMS1_k127_3256751_3 GGDEF domain K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000001809 176.0
CMS1_k127_3256751_4 Domain of unknown function (DUF4389) - - - 0.00000000000003796 75.0
CMS1_k127_3261651_0 Belongs to the glutaminase family K01425 - 3.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 497.0
CMS1_k127_3261651_1 Dtw domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000003805 226.0
CMS1_k127_3261651_2 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000003395 208.0
CMS1_k127_3261651_3 - - - - 0.00000000000000000000000000000000000000005096 159.0
CMS1_k127_3261651_4 DNA-binding protein VF530 - - - 0.00000000000000000000000001262 111.0
CMS1_k127_3261651_5 - - - - 0.00000000000000000000005705 103.0
CMS1_k127_331448_0 Methyltransferase type 11 K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 611.0
CMS1_k127_331448_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 342.0
CMS1_k127_331448_2 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 300.0
CMS1_k127_331448_3 Helix-turn-helix domain K03892 - - 0.0000000000000000000000000000000000000000000000000000000000000009162 220.0
CMS1_k127_331448_4 - - - - 0.0000000000000000000000002284 106.0
CMS1_k127_331448_5 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000618 51.0
CMS1_k127_3318804_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 3.504e-194 612.0
CMS1_k127_3318804_1 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 402.0
CMS1_k127_3318804_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 402.0
CMS1_k127_3318804_3 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002573 279.0
CMS1_k127_3318804_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001335 261.0
CMS1_k127_3318804_5 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000000000000001356 208.0
CMS1_k127_3318804_6 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000000002705 154.0
CMS1_k127_3318804_7 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000000000005622 151.0
CMS1_k127_3318804_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000002103 144.0
CMS1_k127_3318804_9 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000771 126.0
CMS1_k127_3342366_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 591.0
CMS1_k127_3342366_1 cation transport ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 487.0
CMS1_k127_3342366_2 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 - 5.1.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008894 271.0
CMS1_k127_3342366_3 - - - - 0.000000000000000000000483 103.0
CMS1_k127_3342366_4 Cytochrome c553 K08738 - - 0.000000000000000832 80.0
CMS1_k127_3342366_5 Cytochrome oxidase maturation protein - - - 0.000000000006072 68.0
CMS1_k127_3347820_0 Hpt sensor hybrid histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004838 370.0
CMS1_k127_3347820_1 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.000000000000000000000000000000000000000000000000000003063 193.0
CMS1_k127_3354889_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.1.2.1 6.333e-247 764.0
CMS1_k127_3354889_1 Involved in arsenical resistance. Thought to form the channel of an arsenite pump K03893 - - 1.657e-220 689.0
CMS1_k127_3354889_2 anthranilate synthase component K01657 - 4.1.3.27 3.469e-206 650.0
CMS1_k127_3354889_3 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.6 1.554e-205 642.0
CMS1_k127_3354889_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 353.0
CMS1_k127_3354889_5 Domain of unknown function (DUF1882) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 308.0
CMS1_k127_3354889_6 Sporulation related domain K03591,K03749 - - 0.00000000000000000000002254 108.0
CMS1_k127_3354889_7 Domain of unknown function (DUF4878) - - - 0.0000000000000006306 82.0
CMS1_k127_3354889_8 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000000000000001606 84.0
CMS1_k127_3368722_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1129.0
CMS1_k127_3368722_1 Sodium:sulfate symporter transmembrane region K14445 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003835 597.0
CMS1_k127_3368722_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 520.0
CMS1_k127_3368722_3 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000000009008 201.0
CMS1_k127_3368722_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000158 44.0
CMS1_k127_3403999_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1201.0
CMS1_k127_3403999_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008397 524.0
CMS1_k127_3403999_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 523.0
CMS1_k127_3403999_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 510.0
CMS1_k127_3403999_4 membrane - - - 0.00000000000000000000000000000000000000000000000000000000006201 208.0
CMS1_k127_3403999_5 (Lipo)protein K09860 - - 0.000000000000000000000000000000009135 135.0
CMS1_k127_3403999_6 - - - - 0.000000000000000002635 89.0
CMS1_k127_3403999_7 PFAM Bacterial protein of - - - 0.00000000000002739 81.0
CMS1_k127_3403999_8 - - - - 0.000001661 55.0
CMS1_k127_3409922_0 Mediates zinc uptake. May also transport other divalent cations K07238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005704 385.0
CMS1_k127_3409922_1 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006188 280.0
CMS1_k127_3409922_3 - - - - 0.00000000000000000000000000000000005762 136.0
CMS1_k127_3409922_4 flagellar motor switch protein K02410 GO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.00000000000000000000000004222 112.0
CMS1_k127_3409922_5 Domain of unknown function (DUF4389) - - - 0.00000000000134 71.0
CMS1_k127_345028_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0005488,GO:0010181,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0097159,GO:0097367,GO:1901265,GO:1901363 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 559.0
CMS1_k127_345028_1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 516.0
CMS1_k127_345028_2 Cytochrome c oxidase accessory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 488.0
CMS1_k127_345028_3 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 428.0
CMS1_k127_345028_4 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006006 355.0
CMS1_k127_345028_5 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 307.0
CMS1_k127_345028_6 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000001492 226.0
CMS1_k127_345028_7 tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000001957 189.0
CMS1_k127_345028_8 TIGRFAM secondary thiamine-phosphate synthase enzyme - - - 0.00000000000000000000000000000000004762 138.0
CMS1_k127_345028_9 Protein of unknown function, DUF255 - - - 0.00000000000000000000000604 105.0
CMS1_k127_3461454_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.61e-309 951.0
CMS1_k127_3461454_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 1.062e-208 664.0
CMS1_k127_3461454_10 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000006304 121.0
CMS1_k127_3461454_11 - - - - 0.000000000000000000000000008583 115.0
CMS1_k127_3461454_12 GAF domain - - - 0.0000000000008659 75.0
CMS1_k127_3461454_2 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 1.062e-205 649.0
CMS1_k127_3461454_3 Belongs to the GARS family K01945 - 6.3.4.13 1.427e-200 634.0
CMS1_k127_3461454_4 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 576.0
CMS1_k127_3461454_5 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004904 351.0
CMS1_k127_3461454_6 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000004741 230.0
CMS1_k127_3461454_7 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000003658 220.0
CMS1_k127_3461454_8 signal transduction sensor histidine kinase - - - 0.000000000000000000000000000000000000001358 151.0
CMS1_k127_3461454_9 RDD family - - - 0.00000000000000000000000000000002905 130.0
CMS1_k127_3465612_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000082 405.0
CMS1_k127_3465612_1 Abc transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008691 350.0
CMS1_k127_3465612_2 Diguanylate cyclase K02030,K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001307 289.0
CMS1_k127_3465612_3 Domain of unknown function (DUF386) - - - 0.0000000000000000000000000000000000000000000000000000004456 196.0
CMS1_k127_3465612_4 Protein of unknown function (DUF808) K09781 - - 0.000000000000000000000000000000000000000000000000001243 186.0
CMS1_k127_3465612_5 helicase activity - - - 0.00000000000000000000000003471 117.0
CMS1_k127_3480470_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.0 1568.0
CMS1_k127_3480470_1 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1487.0
CMS1_k127_3480470_10 (EAL) domain protein - - - 0.00000000000000000000000000000000000000000000000001608 197.0
CMS1_k127_3480470_11 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000001106 146.0
CMS1_k127_3480470_12 CAAX protease self-immunity K07052 - - 0.000000000007767 74.0
CMS1_k127_3480470_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 7.434e-302 934.0
CMS1_k127_3480470_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K11928 - - 2.401e-245 765.0
CMS1_k127_3480470_4 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 414.0
CMS1_k127_3480470_5 COG0631 Serine threonine protein phosphatase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 398.0
CMS1_k127_3480470_6 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001156 264.0
CMS1_k127_3480470_7 Flagellar Assembly Protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000002513 255.0
CMS1_k127_3480470_8 cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000000000000008659 220.0
CMS1_k127_3480470_9 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000307 210.0
CMS1_k127_3506565_0 cation transport ATPase K01533,K17686 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.4,3.6.3.54 1.215e-312 974.0
CMS1_k127_3506565_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 442.0
CMS1_k127_3506565_2 NMT1/THI5 like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007571 360.0
CMS1_k127_3506565_3 Curli production assembly/transport component CsgG - - - 0.00000000000000000000000000000000000000000005087 172.0
CMS1_k127_3506565_5 Bacterial periplasmic substrate-binding proteins - - - 0.0000000000000000004013 89.0
CMS1_k127_3506565_6 membrane protein (DUF2078) K08982 - - 0.000000000005295 67.0
CMS1_k127_3532669_0 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 536.0
CMS1_k127_3532669_1 phosphoribosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 387.0
CMS1_k127_3532669_10 homoserine kinase type II (Protein kinase fold) K02204 - 2.7.1.39 0.0000000000000000000000000000000002644 143.0
CMS1_k127_3532669_11 - - - - 0.00000000000000001751 87.0
CMS1_k127_3532669_12 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000002409 63.0
CMS1_k127_3532669_2 TonB dependent receptor K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 385.0
CMS1_k127_3532669_3 PFAM Aminotransferase class I and II K04720 - 4.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009202 303.0
CMS1_k127_3532669_4 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003738 274.0
CMS1_k127_3532669_5 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000001708 269.0
CMS1_k127_3532669_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000001918 217.0
CMS1_k127_3532669_7 PFAM Cobinamide kinase cobinamide phosphate guanyltransferase K02231 - 2.7.1.156,2.7.7.62 0.00000000000000000000000000000000000000000000000000000000047 206.0
CMS1_k127_3532669_8 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000000000006018 199.0
CMS1_k127_3532669_9 Periplasmic binding protein K02016 - - 0.00000000000000000000000000000000000000000000000148 184.0
CMS1_k127_3552719_0 Molecular chaperone. Has ATPase activity K04079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 506.0
CMS1_k127_3552719_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 286.0
CMS1_k127_3552719_2 Permease, YjgP YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001432 271.0
CMS1_k127_3552719_3 Peptidase A24 K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000003835 261.0
CMS1_k127_3552719_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000002939 233.0
CMS1_k127_3552719_5 MORN repeat variant - - - 0.00000000000000000000000000000000006346 150.0
CMS1_k127_3552719_6 peptide-methionine (S)-S-oxide reductase activity - - - 0.0000000000000000000000001039 110.0
CMS1_k127_3552719_7 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000155 69.0
CMS1_k127_3552719_8 - - - - 0.0000008265 59.0
CMS1_k127_3557796_0 Histidine kinase K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 571.0
CMS1_k127_3557796_1 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 541.0
CMS1_k127_3557796_2 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005605 495.0
CMS1_k127_3557796_3 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 500.0
CMS1_k127_3557796_4 Nucleotidyltransferase DNA polymerase involved in DNA repair K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 393.0
CMS1_k127_3557796_5 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 340.0
CMS1_k127_3557796_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000001405 174.0
CMS1_k127_3557796_7 COG0642 Signal transduction histidine kinase K02484 - 2.7.13.3 0.00000000000000000000000000000000000000001599 158.0
CMS1_k127_3557796_8 SCO1/SenC K07152 - - 0.00000000000000000000000007481 113.0
CMS1_k127_3557796_9 outer membrane porin, OprD family - - - 0.00000000000000001204 90.0
CMS1_k127_3560933_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0 1034.0
CMS1_k127_3560933_1 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 602.0
CMS1_k127_3560933_2 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002892 545.0
CMS1_k127_3560933_3 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 452.0
CMS1_k127_3560933_5 - - - - 0.00000002273 56.0
CMS1_k127_3560933_7 - - - - 0.0001561 44.0
CMS1_k127_3610654_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 1.116e-258 816.0
CMS1_k127_3610654_1 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 310.0
CMS1_k127_3610654_2 phosphoribosyltransferase K07100 - - 0.000000000000000000000000000000000000000000000000000000000000005463 223.0
CMS1_k127_3610654_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000000000000000000000001197 153.0
CMS1_k127_3610654_4 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000004648 83.0
CMS1_k127_3633406_0 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000936 400.0
CMS1_k127_3633406_1 COG0859 ADP-heptose LPS heptosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 391.0
CMS1_k127_3633406_2 Alginate O-acetylation protein - - - 0.0000000000000000000007789 98.0
CMS1_k127_3657879_0 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008073 482.0
CMS1_k127_3657879_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 399.0
CMS1_k127_3657879_10 PepSY-associated TM region - - - 0.00000000000001796 81.0
CMS1_k127_3657879_11 Protein of unknown function (DUF2798) - - - 0.0000000000007907 70.0
CMS1_k127_3657879_2 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 316.0
CMS1_k127_3657879_3 RNA pseudouridylate synthase K06175 - 5.4.99.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000996 299.0
CMS1_k127_3657879_4 Protein of unknown function (DUF1566) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 294.0
CMS1_k127_3657879_5 Uncharacterized protein conserved in bacteria (DUF2237) K09966 - - 0.00000000000000000000000000000000000000000000000000000001242 199.0
CMS1_k127_3657879_6 phosphatase homologous to the C-terminal domain of histone macroH2A1 - - - 0.000000000000000000000000000000000000000000000000000001219 197.0
CMS1_k127_3657879_7 SCO1 SenC K07152 - - 0.000000000000000000000000000000000000000000000000000003164 196.0
CMS1_k127_3657879_8 hmm pf04314 K09796 - - 0.000000000000000000000000000000000000000000002426 170.0
CMS1_k127_3657879_9 protein conserved in bacteria K09928 - - 0.000000000000000000000000000000000000000000008532 168.0
CMS1_k127_3664394_0 Thiol disulfide interchange protein K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 511.0
CMS1_k127_3664394_1 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005134 380.0
CMS1_k127_3664394_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 285.0
CMS1_k127_3664394_3 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000987 232.0
CMS1_k127_3664394_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000000000000000000005407 207.0
CMS1_k127_3664394_5 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000000000000000000000000000000000005704 153.0
CMS1_k127_3664394_6 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000495 149.0
CMS1_k127_3664394_7 cytochrome c class I - - - 0.000000000000000000417 91.0
CMS1_k127_3672308_0 phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005213 477.0
CMS1_k127_3672308_1 COG0803 ABC-type metal ion transport system, periplasmic component surface adhesin K02077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 403.0
CMS1_k127_3672308_2 ABC 3 transport family K02075 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 293.0
CMS1_k127_3672308_3 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000002618 74.0
CMS1_k127_3696664_0 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 587.0
CMS1_k127_3696664_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005567 415.0
CMS1_k127_3696664_2 dehydrogenase K00076 - 1.1.1.159 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009133 409.0
CMS1_k127_3696664_3 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 328.0
CMS1_k127_3718474_0 GTP-binding protein K06207 - - 0.0 1066.0
CMS1_k127_3718474_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 595.0
CMS1_k127_3718474_2 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000004333 266.0
CMS1_k127_3718474_3 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003521 239.0
CMS1_k127_3718474_4 DsrE/DsrF-like family K09004 - - 0.0000000000000000000000000000000000000001484 155.0
CMS1_k127_3718474_5 TraB family K09973 - - 0.00000000000000000000000000000000000005617 155.0
CMS1_k127_3718474_6 Flagellar hook-length control protein FliK - - - 0.00000000000000004523 95.0
CMS1_k127_3722199_0 cation transport ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 527.0
CMS1_k127_3722199_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669 321.0
CMS1_k127_3722199_2 D,D-heptose 1,7-bisphosphate phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000001762 239.0
CMS1_k127_3722199_3 Oligosaccharyl transferase, STT3 subunit K07151,K17251 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0034645,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046872,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.99.18,2.4.99.19 0.0000000000000000000000000000000000000000000000000000000000000000001517 239.0
CMS1_k127_3723227_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 420.0
CMS1_k127_3723227_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 331.0
CMS1_k127_3723227_2 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 303.0
CMS1_k127_3723227_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000001795 192.0
CMS1_k127_3723227_4 Cytochrome c - - - 0.00000000000000000000000000007311 119.0
CMS1_k127_3737062_0 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000000000000000006522 214.0
CMS1_k127_3737062_1 Histidine kinase - - - 0.00000000000000000000000000000009363 133.0
CMS1_k127_3738243_0 phosphate transporter K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 596.0
CMS1_k127_3738243_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 471.0
CMS1_k127_3738243_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004736 479.0
CMS1_k127_3738243_3 Belongs to the UPF0324 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008049 461.0
CMS1_k127_3738243_4 - K07221 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 460.0
CMS1_k127_3738243_5 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000001066 220.0
CMS1_k127_3740694_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1297.0
CMS1_k127_3740694_1 SMART PAS domain containing protein - - - 0.000000000000000000000000000006093 126.0
CMS1_k127_3771032_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 613.0
CMS1_k127_3771032_1 Glyoxalase-like domain K06996 - - 0.0000000000000000000000000000000000000000000000007736 177.0
CMS1_k127_3771032_2 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000000000000000000003926 143.0
CMS1_k127_3779324_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0 1320.0
CMS1_k127_3779324_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.149e-271 838.0
CMS1_k127_3779324_10 Major facilitator Superfamily - - - 0.00000000000000000000000000001129 122.0
CMS1_k127_3779324_2 Diguanylate cyclase - - - 4.592e-253 799.0
CMS1_k127_3779324_3 Phospholipid glycerol acyltransferase - - - 4.75e-199 636.0
CMS1_k127_3779324_4 Belongs to the pseudouridine synthase RluA family K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 323.0
CMS1_k127_3779324_5 Prolyl 4-hydroxylase alpha subunit homologues. K07394 - - 0.000000000000000000000000000000000000000000000000000000000000000001373 235.0
CMS1_k127_3779324_6 Low molecular weight phosphotyrosine protein phosphatase K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000000000001811 200.0
CMS1_k127_3779324_7 Thioredoxin K07396 - - 0.0000000000000000000000000000000000000000000000000005401 190.0
CMS1_k127_3779324_8 ERAD pathway - - - 0.00000000000000000000000000000000000000003182 164.0
CMS1_k127_3779324_9 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 0.0000000000000000000000000000000000000282 147.0
CMS1_k127_3782324_0 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 548.0
CMS1_k127_3782324_1 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 310.0
CMS1_k127_3782324_2 PFAM EAL domain - - - 0.00000000000006824 75.0
CMS1_k127_3782324_3 dinuclear metal center protein, YbgI K22391 - 3.5.4.16 0.000000001946 61.0
CMS1_k127_3804606_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000487 557.0
CMS1_k127_3804606_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 307.0
CMS1_k127_3804606_2 General glycosylation pathway protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 302.0
CMS1_k127_3804606_3 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 296.0
CMS1_k127_3804606_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001341 247.0
CMS1_k127_3804606_5 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001249 249.0
CMS1_k127_3804606_6 - - - - 0.0000000000005553 73.0
CMS1_k127_3807954_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009161 515.0
CMS1_k127_3807954_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 459.0
CMS1_k127_3807954_2 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000001031 216.0
CMS1_k127_3816491_0 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000001118 158.0
CMS1_k127_3816491_1 Mammalian cell entry related domain protein K02067 - - 0.0000000000000000000000000000000000001474 152.0
CMS1_k127_3816491_2 Hpt sensor hybrid histidine kinase - - - 0.000000000000003407 78.0
CMS1_k127_3816491_3 Sel1-like repeats. - - - 0.0000009537 55.0
CMS1_k127_3816491_4 ATPase activity K02013,K05776 - 3.6.3.34 0.000003566 55.0
CMS1_k127_3816491_5 - - - - 0.0002502 51.0
CMS1_k127_3823301_0 Mg chelatase-related protein K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 559.0
CMS1_k127_3823301_1 - - - - 0.00000000000000000000000000000000000000002821 164.0
CMS1_k127_3823301_2 Histidine kinase - - - 0.0000000000000000000000000001537 119.0
CMS1_k127_3823301_3 Cytochrome c oxidase accessory protein - - - 0.000000000000000006324 86.0
CMS1_k127_3845778_0 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006451 526.0
CMS1_k127_3845778_1 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001148 283.0
CMS1_k127_3845778_2 Protein of unknown function (DUF2892) - - - 0.00001217 53.0
CMS1_k127_38499_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 531.0
CMS1_k127_38499_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007695 278.0
CMS1_k127_38499_2 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001718 280.0
CMS1_k127_38499_3 - - - - 0.000000000000000000000000000007449 123.0
CMS1_k127_3854_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 505.0
CMS1_k127_3854_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006986 364.0
CMS1_k127_3854_2 hydrolase, TatD K03424 - - 0.000000000000000000000000000008944 120.0
CMS1_k127_3854_3 - - - - 0.00000121 56.0
CMS1_k127_3868679_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1215.0
CMS1_k127_3868679_1 Calcineurin-like phosphoesterase - - - 9.206e-220 706.0
CMS1_k127_3868679_2 Ethylbenzene dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007764 503.0
CMS1_k127_3868679_3 Epimerase K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 331.0
CMS1_k127_3868679_4 Lipocalin-like domain K03098 GO:0005575,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0033554,GO:0044462,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000008244 216.0
CMS1_k127_3868679_5 Protein of unknown function (DUF1566) - - - 0.00000000000000000000000000000000000000000000000957 179.0
CMS1_k127_3868679_6 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000001567 160.0
CMS1_k127_3900029_0 COG0474 Cation transport ATPase K01537 - 3.6.3.8 0.0 1255.0
CMS1_k127_3900029_1 Mitochondrial degradasome RNA helicase subunit C terminal K17675 - 3.6.4.13 3.885e-231 746.0
CMS1_k127_3900029_10 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000001702 238.0
CMS1_k127_3900029_11 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000008749 224.0
CMS1_k127_3900029_12 N-acetylmuramoyl-L-alanine amidase - - - 0.000000000000000000000000000000000000000000000000000000000000005313 225.0
CMS1_k127_3900029_13 Protein of unknown function (DUF819) - - - 0.0000000000000000000000000000000000000000000000000000000000002252 227.0
CMS1_k127_3900029_14 Belongs to the globin family K05916 - 1.14.12.17 0.000000000000000000000000000000000000000000000000000000000001927 212.0
CMS1_k127_3900029_15 Enoyl-(Acyl carrier protein) reductase K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000001326 205.0
CMS1_k127_3900029_16 sodium:proton antiporter activity K06382 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000008826 207.0
CMS1_k127_3900029_17 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000001025 182.0
CMS1_k127_3900029_18 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000002748 174.0
CMS1_k127_3900029_19 RDD family - - - 0.000000000000000000000000000000000000000000104 166.0
CMS1_k127_3900029_2 Fad-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 496.0
CMS1_k127_3900029_20 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000000000000000000000000000008367 147.0
CMS1_k127_3900029_21 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000005378 142.0
CMS1_k127_3900029_22 Transcriptional regulator K07734 - - 0.0000000000000000000000000000000001938 139.0
CMS1_k127_3900029_23 Protein of unknown function, DUF481 K07283 - - 0.00000000000000000000000000000003401 135.0
CMS1_k127_3900029_24 Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively - - - 0.0000000000000000000000000000427 126.0
CMS1_k127_3900029_25 Belongs to the glutamate synthase family - - - 0.00000000000000000000001213 102.0
CMS1_k127_3900029_26 cytochrome - - - 0.00000000000000000001256 96.0
CMS1_k127_3900029_27 Domain of unknown function (DUF309) - - - 0.0000000000000007912 82.0
CMS1_k127_3900029_28 COG0531 Amino acid transporters - - - 0.0000002746 53.0
CMS1_k127_3900029_29 Protein of unknown function (DUF2892) - - - 0.0000004548 53.0
CMS1_k127_3900029_3 polyphosphate kinase K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 399.0
CMS1_k127_3900029_4 radical SAM domain protein K03716 - 4.1.99.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 385.0
CMS1_k127_3900029_5 Major facilitator superfamily K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009473 340.0
CMS1_k127_3900029_6 a g-specific adenine glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 335.0
CMS1_k127_3900029_7 epimerase, PhzC PhzF homolog - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008341 325.0
CMS1_k127_3900029_8 SMART GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007376 342.0
CMS1_k127_3900029_9 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003412 262.0
CMS1_k127_3911533_0 phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000000000000000000000001928 157.0
CMS1_k127_3911533_1 - - - - 0.0000000000000000009176 91.0
CMS1_k127_3911533_2 GGDEF domain - - - 0.00000002365 59.0
CMS1_k127_3912433_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.007e-212 663.0
CMS1_k127_3912433_1 o-acetylhomoserine K01740 - 2.5.1.49 3.405e-210 659.0
CMS1_k127_3912433_2 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 549.0
CMS1_k127_3912433_3 involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007906 352.0
CMS1_k127_3912433_4 hydrolase K01501 - 3.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005384 303.0
CMS1_k127_3912433_5 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000008623 194.0
CMS1_k127_3950390_0 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 3.14e-265 835.0
CMS1_k127_3950390_1 Type I secretion system ATPase K12541 - - 1.196e-261 824.0
CMS1_k127_3950390_10 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000654 53.0
CMS1_k127_3950390_2 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 520.0
CMS1_k127_3950390_3 type I secretion membrane fusion protein, HlyD family K02022,K12542 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 447.0
CMS1_k127_3950390_4 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001087 258.0
CMS1_k127_3950390_5 Outer membrane efflux protein K12543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001424 260.0
CMS1_k127_3950390_6 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000001582 246.0
CMS1_k127_3950390_7 domain protein K20276 - - 0.000000000000000000000000000000002847 149.0
CMS1_k127_3950390_8 PFAM FecR protein - - - 0.0000000000000000000000001891 114.0
CMS1_k127_3950390_9 response regulator K07684 - - 0.0000000000000000009147 94.0
CMS1_k127_3968469_0 abc transporter atp-binding protein K06147,K06148 - - 7.258e-226 713.0
CMS1_k127_3968469_1 molybdopterin biosynthesis K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005122 452.0
CMS1_k127_3968469_2 GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005367 432.0
CMS1_k127_3968469_3 molybdopterin converting factor K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000006803 250.0
CMS1_k127_3968469_4 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000000000000000000000000000000003707 226.0
CMS1_k127_3968469_5 Co Zn Cd efflux system component K16264 - - 0.00000000000000000000000000000000000001474 149.0
CMS1_k127_3968469_6 molybdopterin converting factor K03636 - - 0.000000000000000000000001114 104.0
CMS1_k127_3970124_0 Acts as a magnesium transporter K06213 - - 4.877e-221 693.0
CMS1_k127_3970124_1 Uncharacterised conserved protein (DUF2156) K01163 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 568.0
CMS1_k127_3970124_10 Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001358 260.0
CMS1_k127_3970124_11 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000609 200.0
CMS1_k127_3970124_12 Putative ATP-dependant zinc protease - - - 0.00000000000000000000000000000000000000000000004962 173.0
CMS1_k127_3970124_13 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000000000000002287 148.0
CMS1_k127_3970124_2 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007523 498.0
CMS1_k127_3970124_3 Belongs to the RimK family K05844 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 491.0
CMS1_k127_3970124_4 M42 glutamyl aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 488.0
CMS1_k127_3970124_5 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 439.0
CMS1_k127_3970124_6 polyphosphate kinase K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 431.0
CMS1_k127_3970124_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 293.0
CMS1_k127_3970124_8 Histidine Phosphotransfer domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007803 278.0
CMS1_k127_3970124_9 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 - 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000002434 268.0
CMS1_k127_397051_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009744 327.0
CMS1_k127_397051_1 two-component sensor histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000105 237.0
CMS1_k127_397051_2 two-component sensor histidine kinase - - - 0.00000000000000000000000000004142 130.0
CMS1_k127_3977106_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 579.0
CMS1_k127_3977106_1 lytic murein transglycosylase K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 320.0
CMS1_k127_3977106_2 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009209 265.0
CMS1_k127_3977106_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000002562 225.0
CMS1_k127_3977106_4 YGGT family K02221 - - 0.000000000000000000000000002062 113.0
CMS1_k127_3977106_5 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000001453 53.0
CMS1_k127_3984621_0 Malate quinone- oxidoreductase K00116 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.1.5.4 2.134e-256 797.0
CMS1_k127_3984621_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 486.0
CMS1_k127_3984621_2 PFAM ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001811 272.0
CMS1_k127_3984621_3 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001306 259.0
CMS1_k127_3984621_4 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001441 256.0
CMS1_k127_3984621_5 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000007215 239.0
CMS1_k127_3984621_7 Uncharacterised protein family (UPF0259) - - - 0.000738 50.0
CMS1_k127_400833_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007136 280.0
CMS1_k127_400833_1 Lipopolysaccharide-assembly - - - 0.000000000000000000000000000001171 125.0
CMS1_k127_4025194_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 604.0
CMS1_k127_4025194_1 Haemolysin-III related K11068 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001735 278.0
CMS1_k127_4025194_2 PFAM EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008188 290.0
CMS1_k127_4025194_3 Ceramidase - - - 0.000000000000000000000000000000000000000000000000000000000000003073 226.0
CMS1_k127_4035429_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 1.898e-217 692.0
CMS1_k127_4035429_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 429.0
CMS1_k127_4035429_2 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 391.0
CMS1_k127_4035429_3 PAS fold K03776 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003333 239.0
CMS1_k127_4035429_4 HEAT repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000004473 239.0
CMS1_k127_4035429_5 PFAM response regulator receiver K03407,K03413 - 2.7.13.3 0.0000000000000000000000000000000000000000000000002087 178.0
CMS1_k127_4035429_6 SMART CheW domain protein K03408 - - 0.000000000000000000000000000000000000007044 162.0
CMS1_k127_4035429_7 GGDEF domain K03413 - - 0.000000000000000000000003566 102.0
CMS1_k127_4035429_8 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000004916 96.0
CMS1_k127_4042021_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 8.335e-209 670.0
CMS1_k127_4042021_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 583.0
CMS1_k127_4042021_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 565.0
CMS1_k127_4042021_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000002154 222.0
CMS1_k127_4042021_4 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.000000000000000000000000000000000000000000000000006832 186.0
CMS1_k127_4042021_5 Peptidase, M16 K07263 - - 0.0000000000000000000000000000000000000000000000001349 198.0
CMS1_k127_4042021_6 phosphoribosyltransferase K00769 - 2.4.2.22 0.000000000000000000000000000000001739 134.0
CMS1_k127_4072306_0 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 2.969e-206 664.0
CMS1_k127_4072306_1 Cytochrome K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 425.0
CMS1_k127_4072306_2 HI0933 family K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 410.0
CMS1_k127_4072306_3 Nitronate monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006905 329.0
CMS1_k127_4072306_4 Abortive infection protein - - - 0.000000000000000000000000000000159 132.0
CMS1_k127_4072306_5 Uncharacterized protein conserved in bacteria (DUF2059) - - - 0.0000000000006089 78.0
CMS1_k127_4080528_0 type I restriction-modification system K03427 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000002459 261.0
CMS1_k127_4080528_1 neuron death in response to oxidative stress K01173 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003002 259.0
CMS1_k127_4087100_0 Mur ligase middle domain K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 613.0
CMS1_k127_4087100_1 TRAP transporter, DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 511.0
CMS1_k127_4087100_2 Flagellar Assembly Protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 442.0
CMS1_k127_4087100_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 386.0
CMS1_k127_4087100_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002974 288.0
CMS1_k127_4087100_5 HIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001608 268.0
CMS1_k127_4087100_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000003967 222.0
CMS1_k127_4087100_7 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.0000000000000000000000000000000000000000000319 166.0
CMS1_k127_4087100_8 Thiamine-binding protein - - - 0.000000000000000000000000000000000001125 140.0
CMS1_k127_4087100_9 Ankyrin repeat - GO:0003674,GO:0003824,GO:0005575,GO:0008150,GO:0009405,GO:0016740,GO:0016772,GO:0016773,GO:0018995,GO:0030430,GO:0033643,GO:0033646,GO:0043087,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044419,GO:0044605,GO:0050790,GO:0051336,GO:0051704,GO:0065007,GO:0065009 - 0.0000000000000004455 91.0
CMS1_k127_4090641_0 Peptidase M48 K06013 - 3.4.24.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 426.0
CMS1_k127_4090641_1 abc transporter atp-binding protein K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006962 336.0
CMS1_k127_4090641_2 Belongs to the protein N5-glutamine methyltransferase family K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000000000001637 270.0
CMS1_k127_4090641_3 membrane - - - 0.0000000000000000000000001098 112.0
CMS1_k127_4122078_0 Belongs to the ClpA ClpB family K03694,K03695 - - 0.0 1274.0
CMS1_k127_4122078_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 552.0
CMS1_k127_4122078_10 anaphase-promoting complex binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 315.0
CMS1_k127_4122078_11 Jag_N K06346 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000515 273.0
CMS1_k127_4122078_12 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005079 255.0
CMS1_k127_4122078_13 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001378 241.0
CMS1_k127_4122078_14 - - - - 0.0000000000000000000000000000000000000000000000000000007705 199.0
CMS1_k127_4122078_15 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000007615 168.0
CMS1_k127_4122078_16 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000000000000000004093 161.0
CMS1_k127_4122078_17 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000003536 158.0
CMS1_k127_4122078_18 Heme iron utilization protein K07226 - - 0.00000000000000000000000000000000000001896 149.0
CMS1_k127_4122078_19 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000000000000000000002242 132.0
CMS1_k127_4122078_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 529.0
CMS1_k127_4122078_20 Could be involved in insertion of integral membrane proteins into the membrane - - - 0.0000000000000000000000000001258 118.0
CMS1_k127_4122078_21 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000001611 113.0
CMS1_k127_4122078_22 - - - - 0.000000000000000000000000004073 113.0
CMS1_k127_4122078_23 spectrin binding - - - 0.000000000000000000000003655 108.0
CMS1_k127_4122078_24 thiamine biosynthesis protein ThiS K03154 - - 0.00000000000000000003913 91.0
CMS1_k127_4122078_25 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000000139 83.0
CMS1_k127_4122078_26 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000000001303 77.0
CMS1_k127_4122078_3 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 527.0
CMS1_k127_4122078_4 molybdopterin oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 526.0
CMS1_k127_4122078_5 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 488.0
CMS1_k127_4122078_6 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003247 435.0
CMS1_k127_4122078_7 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 407.0
CMS1_k127_4122078_8 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 402.0
CMS1_k127_4122078_9 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 347.0
CMS1_k127_4136244_0 PFAM ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 384.0
CMS1_k127_4136244_1 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002475 342.0
CMS1_k127_4136244_2 COGs COG3864 conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003178 272.0
CMS1_k127_4136244_3 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000000000003861 191.0
CMS1_k127_4144281_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 2.492e-209 664.0
CMS1_k127_4144281_1 NMT1/THI5 like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009479 398.0
CMS1_k127_4144281_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000005074 209.0
CMS1_k127_4144281_3 PAP2 superfamily - - - 0.00000000000000000000000000000000000001464 151.0
CMS1_k127_4144281_4 COGs COG3188 P pilus assembly protein porin PapC K07347 - - 0.0000000000000000000000000000003115 143.0
CMS1_k127_4144281_5 domain, Protein - - - 0.0000000000000001041 89.0
CMS1_k127_4144281_6 COG2143 Thioredoxin-related protein K04084 - 1.8.1.8 0.0000000000000002212 84.0
CMS1_k127_4144281_7 Pili and flagellar-assembly chaperone, PapD N-terminal domain K07346 - - 0.00001142 55.0
CMS1_k127_4172085_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 374.0
CMS1_k127_4172085_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000321 160.0
CMS1_k127_4172085_2 Flagellar Assembly Protein A - - - 0.000000002994 70.0
CMS1_k127_4192271_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007092 585.0
CMS1_k127_4192271_1 general secretion pathway protein D K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 506.0
CMS1_k127_4192271_10 - - - - 0.00000000000007685 77.0
CMS1_k127_4192271_11 general secretion pathway protein K02452 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000001329 66.0
CMS1_k127_4192271_13 - - - - 0.00007233 49.0
CMS1_k127_4192271_2 COG1459 Type II secretory pathway, component PulF K02455,K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 375.0
CMS1_k127_4192271_3 protein conserved in bacteria K09930 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336 353.0
CMS1_k127_4192271_4 von Willebrand factor type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 313.0
CMS1_k127_4192271_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004699 255.0
CMS1_k127_4192271_6 transcriptional regulator, Crp K01420 - - 0.000000000000000000000000000000000000000007575 162.0
CMS1_k127_4192271_7 DoxX K15977 - - 0.00000000000000000000000000000000008553 140.0
CMS1_k127_4192271_9 - - - - 0.000000000000000002937 87.0
CMS1_k127_4259610_0 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 496.0
CMS1_k127_4259610_1 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 381.0
CMS1_k127_4259610_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003577 354.0
CMS1_k127_4259610_3 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 299.0
CMS1_k127_4259610_4 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005499 276.0
CMS1_k127_4259610_5 - - - - 0.000002063 55.0
CMS1_k127_4286286_0 Specifically methylates the adenine in position 1618 of 23S rRNA K06970 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008988,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052907,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 359.0
CMS1_k127_4286286_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 346.0
CMS1_k127_4286286_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001676 273.0
CMS1_k127_4286286_3 Protein of unknown function (DUF808) K09781 - - 0.00000000000000000000000000000000000000000000000000000003516 198.0
CMS1_k127_4286286_4 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000004311 111.0
CMS1_k127_4293607_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 404.0
CMS1_k127_4293607_1 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000002969 242.0
CMS1_k127_4293607_2 Belongs to the HpcH HpaI aldolase family - - - 0.00000000000000000000000000000000000000000000000001335 190.0
CMS1_k127_4293607_3 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000004818 189.0
CMS1_k127_4293607_4 PAS domain - - - 0.0000000000000000000000000000000000000004336 169.0
CMS1_k127_4293607_5 - - - - 0.00000000000000000003706 96.0
CMS1_k127_4293607_6 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.00000001561 67.0
CMS1_k127_4293607_7 - - - - 0.0001439 52.0
CMS1_k127_437855_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 379.0
CMS1_k127_437855_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001032 226.0
CMS1_k127_437855_2 Exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000002366 181.0
CMS1_k127_437855_3 Protein of unknown function (DUF2905) - - - 0.0000000000000000258 84.0
CMS1_k127_437855_4 Protein of unknown function (DUF503) K09764 - - 0.0000000005866 63.0
CMS1_k127_4410480_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.725e-221 697.0
CMS1_k127_4410480_1 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 449.0
CMS1_k127_4410480_10 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000002199 67.0
CMS1_k127_4410480_12 Domain of unknown function (DUF4395) - - - 0.000002125 55.0
CMS1_k127_4410480_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 423.0
CMS1_k127_4410480_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 389.0
CMS1_k127_4410480_4 apolipoprotein N-acyltransferase K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 337.0
CMS1_k127_4410480_5 - - - - 0.00000000000000000000000000000000000000000000000002395 181.0
CMS1_k127_4410480_6 - - - - 0.0000000000000000000000000000000000000002771 154.0
CMS1_k127_4410480_7 Branched-chain amino acid aminotransferase K02619 - 4.1.3.38 0.00000000000000000000000000000000000007043 149.0
CMS1_k127_4410480_8 Stress responsive A B Barrel Domain - - - 0.000000000000000000000000000001199 123.0
CMS1_k127_4410480_9 protein transport K03210 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031522,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000003298 100.0
CMS1_k127_4439802_0 COGs COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase K15022 - 1.17.1.10 0.0 1187.0
CMS1_k127_4439802_1 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1056.0
CMS1_k127_4439802_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 400.0
CMS1_k127_4439802_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 356.0
CMS1_k127_4439802_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006135 297.0
CMS1_k127_4439802_13 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000001348 207.0
CMS1_k127_4439802_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000000005905 161.0
CMS1_k127_4439802_15 putative NADH-ubiquinone oxidoreductase chain E K00334 - 1.6.5.3 0.0000000000000000000000000001193 116.0
CMS1_k127_4439802_17 outer membrane porin, OprD family - - - 0.00000000008648 71.0
CMS1_k127_4439802_2 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 1.106e-310 967.0
CMS1_k127_4439802_3 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 2.683e-278 868.0
CMS1_k127_4439802_4 ATPase (AAA - - - 1.315e-254 796.0
CMS1_k127_4439802_5 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 4.21e-239 747.0
CMS1_k127_4439802_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 3.194e-224 698.0
CMS1_k127_4439802_7 Belongs to the UPF0061 (SELO) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008673 600.0
CMS1_k127_4439802_8 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 477.0
CMS1_k127_4439802_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 433.0
CMS1_k127_444625_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 442.0
CMS1_k127_444625_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 GO:0003674,GO:0005488,GO:0005515,GO:0042802 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 359.0
CMS1_k127_444625_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003736 349.0
CMS1_k127_4469097_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1034.0
CMS1_k127_4469097_1 chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000004089 248.0
CMS1_k127_4469097_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000001221 87.0
CMS1_k127_4486189_0 Putative diguanylate phosphodiesterase - - - 1.667e-267 836.0
CMS1_k127_4486189_1 argininosuccinate lyase K01755 - 4.3.2.1 4.163e-223 699.0
CMS1_k127_4486189_2 CAAX protease self-immunity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002532 251.0
CMS1_k127_4486189_3 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004472 242.0
CMS1_k127_4486189_4 Protein of unknown function, DUF255 - - - 0.0000000000000000000000000000285 122.0
CMS1_k127_4486189_5 BFD-like [2Fe-2S] binding domain - - - 0.0000000000000000000001172 104.0
CMS1_k127_4486189_6 Belongs to the UbiD family K03182 - 4.1.1.98 0.0000000000000000000002633 97.0
CMS1_k127_4486189_7 - - - - 0.00000000000000000001072 96.0
CMS1_k127_4486189_8 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000003099 79.0
CMS1_k127_4497207_0 Diguanylate cyclase K20964 - 3.1.4.52 1.566e-239 766.0
CMS1_k127_4497207_1 Pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000005128 139.0
CMS1_k127_4500280_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.257e-306 950.0
CMS1_k127_4500280_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.528e-302 942.0
CMS1_k127_4500280_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 456.0
CMS1_k127_4500280_3 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 291.0
CMS1_k127_4500280_4 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000001268 224.0
CMS1_k127_4500280_5 - - - - 0.00000000000000000000000005891 122.0
CMS1_k127_4537906_0 PFAM CheW domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 535.0
CMS1_k127_4537906_2 Proprotein convertase P-domain - - - 0.000000006998 61.0
CMS1_k127_4540872_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00367,K00372,K08356 - 1.20.2.1,1.20.9.1,1.7.7.2 0.0 1071.0
CMS1_k127_4540872_1 COG0155 Sulfite reductase, beta subunit (hemoprotein) K00366,K00392 - 1.7.7.1,1.8.7.1 9.529e-287 893.0
CMS1_k127_4540872_2 COG2223 Nitrate nitrite transporter K02575 - - 4.487e-236 734.0
CMS1_k127_4540872_3 COG0631 Serine threonine protein phosphatase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 446.0
CMS1_k127_4540872_4 precorrin-2 dehydrogenase activity K02302,K02303,K02304,K13541,K13542 GO:0003674,GO:0003824,GO:0004851,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008757,GO:0009058,GO:0009628,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019354,GO:0019438,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046156,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.76,2.1.1.107,2.1.1.131,3.7.1.12,4.2.1.75,4.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 442.0
CMS1_k127_4543450_0 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000004686 167.0
CMS1_k127_4543450_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000001003 149.0
CMS1_k127_4543450_2 Bacterial regulatory proteins, tetR family - - - 0.00000003936 61.0
CMS1_k127_4568289_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006953 492.0
CMS1_k127_4568289_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 377.0
CMS1_k127_4568289_10 Putative thioesterase (yiiD_Cterm) - - - 0.000000000000000000000000000002161 124.0
CMS1_k127_4568289_11 Cupin domain - - - 0.00000000000000000000000003724 111.0
CMS1_k127_4568289_12 - - - - 0.000000000001005 72.0
CMS1_k127_4568289_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 360.0
CMS1_k127_4568289_3 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 341.0
CMS1_k127_4568289_4 sensor diguanylate cyclase phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 355.0
CMS1_k127_4568289_5 acid membrane antigen A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 306.0
CMS1_k127_4568289_6 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000002478 253.0
CMS1_k127_4568289_7 7TM diverse intracellular signalling K20971 - - 0.00000000000000000000000000000000000000000000000000000000000000000001927 258.0
CMS1_k127_4568289_8 GHKL domain - - - 0.00000000000000000000000000000000000009025 156.0
CMS1_k127_4568289_9 Histidine kinase K03407 - 2.7.13.3 0.0000000000000000000000000000000001673 138.0
CMS1_k127_4598165_0 ABC transporter, ATP-binding protein K15738 - - 3.885e-282 882.0
CMS1_k127_4598165_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001175 238.0
CMS1_k127_4598165_2 - - - - 0.000000008199 65.0
CMS1_k127_4612567_0 Cytochrome c K17223 - - 0.000000000000000000000000000000000000000000000000000000000000000000001929 239.0
CMS1_k127_4612567_1 chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000003011 215.0
CMS1_k127_4612567_2 Sulfur oxidation protein SoxY K17226 - - 0.000000000000000000000000000000000000000000000005951 175.0
CMS1_k127_4637492_0 Biotin carboxylase K01959,K01961 - 6.3.4.14,6.4.1.1,6.4.1.2 2.178e-244 761.0
CMS1_k127_4637492_1 PFAM Bacterial transcription activator, effector binding domain K13652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 413.0
CMS1_k127_4637492_10 - - - - 0.000000000000000000000000000005055 126.0
CMS1_k127_4637492_11 Thioredoxin K03672 - 1.8.1.8 0.000000000000000000000000003305 115.0
CMS1_k127_4637492_12 beta-lactamase activity K07126 - - 0.00000000000006467 72.0
CMS1_k127_4637492_2 Sel1-like repeats. K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001234 272.0
CMS1_k127_4637492_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007551 247.0
CMS1_k127_4637492_4 Probably functions as a manganese efflux pump - - - 0.0000000000000000000000000000000000000000000000000000000000000009257 224.0
CMS1_k127_4637492_5 Ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000001146 217.0
CMS1_k127_4637492_6 CheR methyltransferase, SAM binding domain K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000003761 213.0
CMS1_k127_4637492_7 - - - - 0.000000000000000000000000000000000000000000000000007121 185.0
CMS1_k127_4637492_8 Dinitrogenase iron-molybdenum cofactor - - - 0.00000000000000000000000000000000000000003909 155.0
CMS1_k127_4637492_9 molybdate ion transport K02017,K06857 - 3.6.3.29,3.6.3.55 0.00000000000000000000000000000000008088 138.0
CMS1_k127_4660624_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001186 269.0
CMS1_k127_4660624_1 Thioredoxin K03672 - 1.8.1.8 0.0000000000000000000000000000000000000000000000005983 178.0
CMS1_k127_4660624_2 YceI-like domain - - - 0.0000000000000000000000000006155 119.0
CMS1_k127_4668908_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007107 497.0
CMS1_k127_4668908_1 chemotaxis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 329.0
CMS1_k127_4668908_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001922 276.0
CMS1_k127_4668908_3 Oxygen tolerance - - - 0.00000000000000000000000000000000000000000000000000000000002306 224.0
CMS1_k127_4668908_4 - - - - 0.000000000000000000000000000000000000000000000000000001201 214.0
CMS1_k127_4668908_5 - - - - 0.0000000000000000000000004374 117.0
CMS1_k127_4668908_6 Aerotolerance regulator BatC - - - 0.00000004329 63.0
CMS1_k127_4679712_0 Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA) K00557 - 2.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051 430.0
CMS1_k127_4679712_1 forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine K02556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 358.0
CMS1_k127_4679712_10 Membrane domain of glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000001088 98.0
CMS1_k127_4679712_2 Plays a role in the flagellum-specific transport system K02419 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 355.0
CMS1_k127_4679712_3 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 323.0
CMS1_k127_4679712_4 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001504 265.0
CMS1_k127_4679712_5 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001634 269.0
CMS1_k127_4679712_6 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000000000007837 188.0
CMS1_k127_4679712_7 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000251 186.0
CMS1_k127_4679712_8 COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.0000000000000000000004617 100.0
CMS1_k127_4679712_9 S4 domain K14761 - - 0.0000000000000000000758 90.0
CMS1_k127_4700177_0 membrane K15270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007585 408.0
CMS1_k127_4700177_1 Belongs to the KdsA family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000281 405.0
CMS1_k127_4700177_2 mechanosensitive ion channel K16052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 333.0
CMS1_k127_4700177_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000000000001469 258.0
CMS1_k127_4700177_4 LPP20 lipoprotein - - - 0.000000000000000000000000000000000000000000000000000147 191.0
CMS1_k127_4700177_5 Membrane-bound lytic murein transglycosylase C K08306 - - 0.000000000000000000000000000000000000000000008169 172.0
CMS1_k127_4700177_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000004905 70.0
CMS1_k127_47103_0 DNA recombination protein K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004899 386.0
CMS1_k127_47103_1 cAMP phosphodiesterases class-II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002571 279.0
CMS1_k127_47103_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000003525 237.0
CMS1_k127_47103_3 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000001412 199.0
CMS1_k127_47103_4 - - - - 0.000000000000000000000000000005538 124.0
CMS1_k127_4732114_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 9.927e-205 647.0
CMS1_k127_4732114_1 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000008412 179.0
CMS1_k127_473664_0 MotA TolQ ExbB proton channel family - - - 0.0000000000000000000000000000000000000000000000000001892 191.0
CMS1_k127_473664_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000019 156.0
CMS1_k127_473664_2 transport protein K03559 - - 0.0000000000000000000000000000000000001507 144.0
CMS1_k127_473664_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000267 57.0
CMS1_k127_473664_4 Involved in the TonB-independent uptake of proteins K03641 - - 0.00009733 46.0
CMS1_k127_4748267_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 327.0
CMS1_k127_4748267_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008427 316.0
CMS1_k127_4748267_2 Hemolysin K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000004352 192.0
CMS1_k127_4748267_3 - - - - 0.0000000000000000000000000000000000000000001033 164.0
CMS1_k127_4748267_4 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000001696 151.0
CMS1_k127_4748267_5 Uncharacterised protein family (UPF0227) K07000 - - 0.00000000000000000000000000000000001858 141.0
CMS1_k127_4748267_6 Protein of unknown function (DUF2892) - - - 0.000000000000000002472 85.0
CMS1_k127_4748267_7 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. - - - 0.000000002183 70.0
CMS1_k127_4748267_9 ankyrin 3, node of Ranvier (ankyrin G) K10799 - 2.4.2.30 0.0001901 54.0
CMS1_k127_4753985_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001055 278.0
CMS1_k127_4753985_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000001157 210.0
CMS1_k127_4753985_2 - - - - 0.00000000000000000000000000000000000000000000000000007834 192.0
CMS1_k127_4753985_3 Nitrogen fixation protein NifU - - - 0.00000000000000000000000000000000000000002938 153.0
CMS1_k127_4758275_0 MMPL family K07003 - - 4.608e-274 864.0
CMS1_k127_4758275_1 Major Facilitator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 393.0
CMS1_k127_4758275_2 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000001225 178.0
CMS1_k127_4758275_3 morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 GO:0001539,GO:0005575,GO:0005576,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.0000000000000000000000000000000000000000000001071 184.0
CMS1_k127_4758275_4 transcriptional regulator - - - 0.0000000000000000000000000000000000000000001221 166.0
CMS1_k127_4758275_6 flagellar protein FlaG K06603 - - 0.00000000000003822 78.0
CMS1_k127_4785112_0 Hydrogenase-4, component G K14090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 576.0
CMS1_k127_4785112_1 PFAM respiratory-chain NADH dehydrogenase, subunit 1 K14087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 347.0
CMS1_k127_4785112_2 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 287.0
CMS1_k127_4785112_3 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00338,K14091 - 1.6.5.3 0.00000000000000000000000000000000000000000002091 165.0
CMS1_k127_4785112_4 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 0.0000000000000000000000000000000000004863 142.0
CMS1_k127_4814404_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 480.0
CMS1_k127_4814404_1 Histidine kinase K13040 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000001399 258.0
CMS1_k127_4814404_2 beta-lactamase activity K07126 - - 0.000000000000000000000000000000000000000000000000000000000001225 212.0
CMS1_k127_4814404_3 - - - - 0.000000000000000000000000000000000000000000000000000000000008206 219.0
CMS1_k127_4814404_4 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000000000000000000000000002613 203.0
CMS1_k127_4814404_5 DnaK suppressor protein K06204 - - 0.000000000000000000000000000000000000000000001149 167.0
CMS1_k127_4814404_6 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000004305 164.0
CMS1_k127_4843628_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 5.841e-224 696.0
CMS1_k127_4843628_1 Belongs to the mannose-6-phosphate isomerase type 2 family K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 438.0
CMS1_k127_4843628_2 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 375.0
CMS1_k127_4843628_3 NUDIX domain K03207 - - 0.0000000000000000000000000000000000005436 144.0
CMS1_k127_4865292_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000005624 230.0
CMS1_k127_4865292_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000001435 175.0
CMS1_k127_4865292_2 Histidine kinase - - - 0.000000000000000000000000000000000000000001058 159.0
CMS1_k127_4865292_3 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000003515 115.0
CMS1_k127_488329_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 604.0
CMS1_k127_488329_1 Abc transporter K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 607.0
CMS1_k127_488329_2 pyruvate ferredoxin oxidoreductase K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 573.0
CMS1_k127_488329_3 pyruvate ferredoxin oxidoreductase K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005437 321.0
CMS1_k127_488329_4 Hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001359 273.0
CMS1_k127_488329_5 Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) K07173 - 4.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002432 269.0
CMS1_k127_488329_6 S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001826 242.0
CMS1_k127_488329_7 pyruvate ferredoxin oxidoreductase K00171 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000007254 217.0
CMS1_k127_488329_8 - - - - 0.000000000001919 70.0
CMS1_k127_4893024_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000005123 218.0
CMS1_k127_4913852_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 1.142e-204 646.0
CMS1_k127_4913852_1 chaperone-mediated protein folding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 480.0
CMS1_k127_4913852_2 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 437.0
CMS1_k127_4913852_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001763 286.0
CMS1_k127_4913852_4 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002357 251.0
CMS1_k127_4913852_5 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000002227 206.0
CMS1_k127_4913852_6 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.00000000000000000000000000000001504 129.0
CMS1_k127_4913852_7 - - - - 0.000001229 52.0
CMS1_k127_4914621_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 5.32e-305 944.0
CMS1_k127_4914621_1 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 2.309e-220 692.0
CMS1_k127_4914621_2 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001276 272.0
CMS1_k127_4914621_3 ubiquinol cytochrome c oxidoreductase, cytochrome c1 K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002819 264.0
CMS1_k127_4914621_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000001318 228.0
CMS1_k127_4914621_5 - - - - 0.00000000000000000000000000000000000000000000000000000004743 206.0
CMS1_k127_4988305_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 554.0
CMS1_k127_4988305_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006253 451.0
CMS1_k127_4988305_10 Belongs to the DEAD box helicase family K05591 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000001096 195.0
CMS1_k127_4988305_2 Belongs to the DegT DnrJ EryC1 family K15895 - 2.6.1.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 451.0
CMS1_k127_4988305_3 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 402.0
CMS1_k127_4988305_4 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005163 364.0
CMS1_k127_4988305_5 component I K01665 - 2.6.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 365.0
CMS1_k127_4988305_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 308.0
CMS1_k127_4988305_7 hmm pf04305 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 305.0
CMS1_k127_4988305_8 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002089 280.0
CMS1_k127_4988305_9 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000007231 219.0
CMS1_k127_5000578_0 COGs COG1252 NADH dehydrogenase FAD-containing subunit K17218 - 1.8.5.4 1.51e-229 717.0
CMS1_k127_5000578_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 317.0
CMS1_k127_5007353_0 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 446.0
CMS1_k127_5007353_1 chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008587 389.0
CMS1_k127_5007353_2 peptidase M23 - - - 0.0000000000000000000000002727 108.0
CMS1_k127_5007353_3 Nudix domain K08077 - 3.6.1.45 0.0000003075 52.0
CMS1_k127_5029549_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 1.27e-225 704.0
CMS1_k127_5029549_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 471.0
CMS1_k127_5029549_2 PFAM NAD dependent epimerase dehydratase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 445.0
CMS1_k127_5043520_0 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 1.456e-230 719.0
CMS1_k127_5043520_1 Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM) K15256 GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0042221,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071281 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 293.0
CMS1_k127_5043520_3 Lipid A 3-O-deacylase (PagL) - - - 0.0000000000003973 77.0
CMS1_k127_5043520_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K12976 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008653,GO:0009279,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0016788,GO:0019637,GO:0019867,GO:0030312,GO:0030313,GO:0031224,GO:0031975,GO:0042802,GO:0042803,GO:0043170,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044425,GO:0044462,GO:0044464,GO:0046493,GO:0046983,GO:0050528,GO:0052689,GO:0071704,GO:0071944,GO:1901135,GO:1901269,GO:1903509 - 0.0000001361 61.0
CMS1_k127_5045126_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1044.0
CMS1_k127_5045126_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 527.0
CMS1_k127_5045126_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007762 382.0
CMS1_k127_5045126_3 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000001277 211.0
CMS1_k127_5045126_4 transformation system protein K02242 - - 0.0000000000000000000000000000000000000000000000002886 183.0
CMS1_k127_5045126_5 Sulfatase-modifying factor enzyme 1 - - - 0.0000000000000000000000000000000000000000000001006 178.0
CMS1_k127_5045126_6 Histidine kinase - - - 0.00000000000000000000000000000000001608 152.0
CMS1_k127_5045126_7 Metal-dependent hydrolase K07043 - - 0.0000000000000000000001065 106.0
CMS1_k127_5045126_8 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000721 82.0
CMS1_k127_5045126_9 - - - - 0.00001403 53.0
CMS1_k127_5058419_0 PFAM peptidase M3A and M3B thimet oligopeptidase F K01414 - 3.4.24.70 2.335e-272 851.0
CMS1_k127_5058419_1 Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001008 285.0
CMS1_k127_5078362_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 343.0
CMS1_k127_5078362_1 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001104 246.0
CMS1_k127_5078362_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000002503 189.0
CMS1_k127_5113618_0 GHKL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 350.0
CMS1_k127_5113618_1 Hydrolase, alpha beta domain protein K01048 - 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000000004025 217.0
CMS1_k127_5134737_0 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 593.0
CMS1_k127_5134737_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 439.0
CMS1_k127_5134737_2 transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009568 387.0
CMS1_k127_5134737_4 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000591 213.0
CMS1_k127_5156022_0 GAF domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001129 270.0
CMS1_k127_5156022_1 - - - - 0.00000000000000000000001881 104.0
CMS1_k127_5163925_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 2.622e-227 726.0
CMS1_k127_5163925_1 Histidine kinase K02484 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 464.0
CMS1_k127_5163925_2 Guanosine pentaphosphate phosphohydrolase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009143 441.0
CMS1_k127_5163925_3 prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 290.0
CMS1_k127_5163925_5 Ferredoxin K05337 - - 0.0000000000000000000000000000000000000008877 148.0
CMS1_k127_5163925_6 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000002746 56.0
CMS1_k127_5164200_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 4e-283 894.0
CMS1_k127_5164200_1 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 389.0
CMS1_k127_5164200_10 nucleic-acid-binding protein implicated in transcription termination - - - 0.00000000002571 67.0
CMS1_k127_5164200_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009127 389.0
CMS1_k127_5164200_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 357.0
CMS1_k127_5164200_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 306.0
CMS1_k127_5164200_5 riboflavin biosynthesis protein K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 310.0
CMS1_k127_5164200_6 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000003216 211.0
CMS1_k127_5164200_7 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000000000000000000008299 155.0
CMS1_k127_5164200_8 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000000001054 154.0
CMS1_k127_5164200_9 Methyltransferase domain - - - 0.00000000000000000000000000003697 120.0
CMS1_k127_5169275_0 Glycolate oxidase subunit K00104 - 1.1.3.15 1.366e-263 815.0
CMS1_k127_5169275_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 GO:0003674,GO:0005488,GO:0005515,GO:0042802 3.6.4.12 3.321e-211 665.0
CMS1_k127_5169275_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 564.0
CMS1_k127_5169275_3 peptidase M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006478 309.0
CMS1_k127_5169275_4 Competence protein K02238 - - 0.00000000000000000000000000000000000000000000000000000000000003653 229.0
CMS1_k127_5169275_5 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000001514 201.0
CMS1_k127_5169275_6 Plasminogen-binding protein pgbA N-terminal - - - 0.00000000000000000000000000000000000000007986 159.0
CMS1_k127_5169275_7 ribonuclease BN K07058 - - 0.0000000000000000000000000000000000000001167 160.0
CMS1_k127_5204040_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 2.443e-285 881.0
CMS1_k127_5204040_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006823 453.0
CMS1_k127_5204040_2 Co-chaperone-curved DNA binding protein A K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 374.0
CMS1_k127_5204040_3 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003543 271.0
CMS1_k127_5204040_4 Pseudouridine synthase K06177,K06179,K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23,5.4.99.24,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000002857 216.0
CMS1_k127_5204040_5 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000005487 237.0
CMS1_k127_5204040_6 Transcriptional regulator K13640 - - 0.0000000000000000000000000000000000000000131 155.0
CMS1_k127_5227780_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.875e-202 639.0
CMS1_k127_5227780_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 524.0
CMS1_k127_5227780_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 325.0
CMS1_k127_5227780_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000502 248.0
CMS1_k127_5227780_4 Mannosyl-glycoprotein K03796 - - 0.000000000000000000000000000000000000000000000000000000000000007185 224.0
CMS1_k127_5227780_5 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000000000000001062 209.0
CMS1_k127_5227780_6 7TM diverse intracellular signalling K20971 - - 0.0000000000000000000000000000000000000000000000000000006582 203.0
CMS1_k127_5227780_7 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000195 165.0
CMS1_k127_5227780_8 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000000002356 116.0
CMS1_k127_5227780_9 glyoxalase III activity - - - 0.0000000000002346 76.0
CMS1_k127_5241279_0 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 2.665e-232 725.0
CMS1_k127_5241279_1 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 286.0
CMS1_k127_5241279_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006286 284.0
CMS1_k127_5241279_3 phenylacetate-CoA ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000009341 223.0
CMS1_k127_5241279_4 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000544 211.0
CMS1_k127_5270009_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 429.0
CMS1_k127_5270009_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 362.0
CMS1_k127_5270009_2 7TMR-DISM extracellular 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001272 265.0
CMS1_k127_5273171_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 2.458e-275 849.0
CMS1_k127_5273171_1 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000003155 235.0
CMS1_k127_5326359_0 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 387.0
CMS1_k127_5326359_1 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000000000000000000000000000004892 215.0
CMS1_k127_5326359_2 Chemotaxis protein CheW K03408 - - 0.0000000000001539 71.0
CMS1_k127_5329173_0 COG0847 DNA polymerase III epsilon subunit and related 3'-5' K02342,K10857 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 314.0
CMS1_k127_5329173_1 lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000009021 239.0
CMS1_k127_5329173_2 Methyltransferase domain - - - 0.0000000000000000000009341 99.0
CMS1_k127_5329173_3 Domain of unknown function (DUF4389) - - - 0.0000000000000142 78.0
CMS1_k127_5332015_0 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.000000000000000006383 99.0
CMS1_k127_5332015_1 Belongs to the MtfA family K09933 - - 0.000000000000002057 77.0
CMS1_k127_5335353_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1018.0
CMS1_k127_5335353_1 MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 353.0
CMS1_k127_5335353_10 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000000000000000000000000000000000000000001006 167.0
CMS1_k127_5335353_11 proline dehydrogenase activity - - - 0.000000000000000000000000000001052 132.0
CMS1_k127_5335353_12 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000000000003678 111.0
CMS1_k127_5335353_13 Prokaryotic N-terminal methylation motif - - - 0.0000000000008086 75.0
CMS1_k127_5335353_14 - - - - 0.00000000000121 78.0
CMS1_k127_5335353_15 TonB dependent receptor K02014 - - 0.000000001871 59.0
CMS1_k127_5335353_16 - - - - 0.0000003782 60.0
CMS1_k127_5335353_2 PFAM Auxin Efflux Carrier K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 321.0
CMS1_k127_5335353_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003592 261.0
CMS1_k127_5335353_4 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000003179 214.0
CMS1_k127_5335353_5 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000000000000000000000002984 195.0
CMS1_k127_5335353_6 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000001358 189.0
CMS1_k127_5335353_7 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000000000000000000000001272 175.0
CMS1_k127_5335353_8 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000004654 171.0
CMS1_k127_5335353_9 Protein of unknown function (DUF3450) - - - 0.000000000000000000000000000000000000000000007603 172.0
CMS1_k127_5336383_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 1.065e-196 618.0
CMS1_k127_5336383_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005905 389.0
CMS1_k127_5336383_2 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003648 282.0
CMS1_k127_5336383_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000003092 199.0
CMS1_k127_5336383_4 Diguanylate cyclase - - - 0.00000000000000000000000000002257 122.0
CMS1_k127_5345835_0 CDP-glucose 4,6-dehydratase K01709 - 4.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 554.0
CMS1_k127_5345835_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 323.0
CMS1_k127_5345835_2 Glucose-1-phosphate cytidylyltransferase K00978 - 2.7.7.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 289.0
CMS1_k127_5399123_0 Toxic anion resistance protein (TelA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 411.0
CMS1_k127_5399123_1 - - - - 0.000000000000000000000000000000000000000000000002533 187.0
CMS1_k127_5399123_2 - - - - 0.00000000000000000000000000000000000000002173 167.0
CMS1_k127_5403024_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 357.0
CMS1_k127_5403024_1 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 - 4.1.2.17 0.0000000000000000000000566 101.0
CMS1_k127_5403024_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000007268 72.0
CMS1_k127_5424156_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 420.0
CMS1_k127_5424156_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008886 271.0
CMS1_k127_5429987_0 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 398.0
CMS1_k127_5429987_1 potassium channel protein K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004167 353.0
CMS1_k127_5429987_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001525 281.0
CMS1_k127_5429987_3 TrkA-N domain - - - 0.0000000000000000000000000000000000000000005819 165.0
CMS1_k127_544966_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1194.0
CMS1_k127_544966_1 metallophosphoesterase K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 365.0
CMS1_k127_544966_2 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005645 337.0
CMS1_k127_544966_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 336.0
CMS1_k127_544966_4 endonuclease III K07457 - - 0.0000000000000000000000000000000000000000000000000000000000000001036 228.0
CMS1_k127_544966_5 carbonic anhydrase K01674 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000001174 217.0
CMS1_k127_544966_6 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000008015 106.0
CMS1_k127_544966_7 outer membrane porin, OprD family - - - 0.0000000000002302 82.0
CMS1_k127_5484788_0 acetolactate synthase K01652 - 2.2.1.6 2.385e-296 918.0
CMS1_k127_5484788_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 518.0
CMS1_k127_5484788_2 PFAM HI0933 family protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 437.0
CMS1_k127_5484788_3 WD40 repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 384.0
CMS1_k127_5484788_4 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 308.0
CMS1_k127_5484788_5 Ppx GppA K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000529 265.0
CMS1_k127_5484788_6 acetolactate synthase K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000007659 236.0
CMS1_k127_5484788_7 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000002494 233.0
CMS1_k127_5484788_8 CoA-binding protein K06929 - - 0.000000000000000000000000000000000000000000000000000000009201 201.0
CMS1_k127_5484788_9 protein involved in exopolysaccharide biosynthesis - - - 0.00002656 54.0
CMS1_k127_5493601_0 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 8.905e-217 677.0
CMS1_k127_5493601_1 Desulfoferrodoxin, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 323.0
CMS1_k127_5493601_2 COG0433 Predicted ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 306.0
CMS1_k127_5493601_3 Chemotaxis phosphatase CheX - - - 0.000000000000000000000000000000000000000000000000000000002013 213.0
CMS1_k127_5493601_5 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000007664 150.0
CMS1_k127_5493601_7 - - - - 0.00000000000004363 77.0
CMS1_k127_5495700_0 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034,K12370 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 344.0
CMS1_k127_5495700_1 flagellar hook-associated protein K02396 - - 0.00000000000000000000000000000003021 130.0
CMS1_k127_5527371_0 penicillin-binding protein K05515 - 3.4.16.4 1.028e-235 742.0
CMS1_k127_5527371_1 Imidazoleglycerol-phosphate dehydratase K01089,K01693 - 3.1.3.15,4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 290.0
CMS1_k127_5527371_2 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001148 256.0
CMS1_k127_5527371_3 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000004182 221.0
CMS1_k127_5527371_4 acetyltransferase K00619 - 2.3.1.1 0.0000000000000000000000000000000000000000000000000000000000007436 214.0
CMS1_k127_5527371_5 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000006376 196.0
CMS1_k127_5527371_6 Lipopolysaccharide transport periplasmic protein lpta K09774 - - 0.0000000000000000000000000008333 119.0
CMS1_k127_5527371_7 - - - - 0.0000000000001337 78.0
CMS1_k127_5528843_0 molybdopterin biosynthesis K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 354.0
CMS1_k127_5528843_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity - - - 0.000000000000000000000000000002439 135.0
CMS1_k127_5528843_2 that it carries out the mismatch recognition step. This protein has a weak ATPase activity - - - 0.000000000005037 70.0
CMS1_k127_5535617_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 508.0
CMS1_k127_5535617_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003372 281.0
CMS1_k127_5535617_2 Protein of unknown function, DUF485 - - - 0.000000000000000000000006283 106.0
CMS1_k127_5593726_0 4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008559 359.0
CMS1_k127_5593726_1 - - - - 0.000000000000000000000000000000000000000000000000005542 187.0
CMS1_k127_5593726_2 Endonuclease I K01150 - 3.1.21.1 0.0000000000000000000000000000001632 132.0
CMS1_k127_5593726_3 - - - - 0.00000000000000001473 89.0
CMS1_k127_5593726_4 DnaJ domain protein K03686 - - 0.00000000005126 66.0
CMS1_k127_5600784_0 Stage II sporulation protein E (SpoIIE) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008303 272.0
CMS1_k127_5600784_1 - - - - 0.000004111 50.0
CMS1_k127_5609091_0 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000001548 139.0
CMS1_k127_5609091_1 - - - - 0.000000000000000000000003103 109.0
CMS1_k127_5609091_2 signal sequence binding - - - 0.000000000002035 75.0
CMS1_k127_5629873_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.367e-201 634.0
CMS1_k127_5629873_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004275 566.0
CMS1_k127_5629873_10 nerve growth factor signaling pathway K12460 - - 0.0000323 51.0
CMS1_k127_5629873_2 Catalyzes carboxymethyl transfer from carboxy-S- adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs K15257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 379.0
CMS1_k127_5629873_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007299 364.0
CMS1_k127_5629873_4 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 320.0
CMS1_k127_5629873_5 Belongs to the DEAD box helicase family K05591 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 307.0
CMS1_k127_5629873_6 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000005871 164.0
CMS1_k127_5629873_7 Thioredoxin-like - - - 0.00000000000000000000000000000000000008559 148.0
CMS1_k127_5629873_8 VRR_NUC - - - 0.0000000000000000000000000003061 117.0
CMS1_k127_5629873_9 thioesterase K02614 - - 0.000000000000000000000000001068 118.0
CMS1_k127_5634636_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 7.053e-240 748.0
CMS1_k127_5634636_1 Glycerol-3-phosphate dehydrogenase K11473 - - 1.316e-224 701.0
CMS1_k127_5634636_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000001124 193.0
CMS1_k127_5634636_3 PFAM DsrE DsrF-like family - - - 0.0000000000000000000000000000000000000002471 152.0
CMS1_k127_5634636_4 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000001093 85.0
CMS1_k127_5634636_5 Belongs to the UPF0225 family K09858 - - 0.00000000000007421 76.0
CMS1_k127_5634636_6 GAF domain - - - 0.0000000004632 72.0
CMS1_k127_5634636_7 Outer membrane protein beta-barrel domain - - - 0.0009165 42.0
CMS1_k127_5636962_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 3.107e-200 629.0
CMS1_k127_5636962_1 Potassium channel protein K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005159 520.0
CMS1_k127_5636962_10 dna polymerase iii K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000003033 229.0
CMS1_k127_5636962_11 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000005394 125.0
CMS1_k127_5636962_12 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000001016 109.0
CMS1_k127_5636962_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 510.0
CMS1_k127_5636962_3 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005784 490.0
CMS1_k127_5636962_4 Chemotaxis phosphatase CheX - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 475.0
CMS1_k127_5636962_5 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 357.0
CMS1_k127_5636962_6 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 315.0
CMS1_k127_5636962_7 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 304.0
CMS1_k127_5636962_8 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001211 280.0
CMS1_k127_5636962_9 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000162 246.0
CMS1_k127_5669821_0 threonine synthase K01733 - 4.2.3.1 4.351e-237 741.0
CMS1_k127_5669821_1 ABC1 family K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 522.0
CMS1_k127_5669821_2 Highly conserved protein containing a thioredoxin domain K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003923 509.0
CMS1_k127_5669821_4 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000000002247 146.0
CMS1_k127_5669821_5 cheY-homologous receiver domain - - - 0.0000000000000000000000000001757 125.0
CMS1_k127_5669821_6 CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000009021 104.0
CMS1_k127_5669821_7 - - - - 0.00009889 48.0
CMS1_k127_5677519_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000004789 226.0
CMS1_k127_5677519_1 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000524 173.0
CMS1_k127_568012_0 Involved in arsenical resistance. Thought to form the channel of an arsenite pump K03893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 381.0
CMS1_k127_568012_1 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 353.0
CMS1_k127_568012_2 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000000000000000000000001897 216.0
CMS1_k127_568012_3 Transcriptional regulator K03892 - - 0.000000000000000000000000000000000000000000000007099 173.0
CMS1_k127_568012_4 COG2166 SufE protein probably involved in Fe-S center assembly K02426 - - 0.000000000000000000000000000001331 125.0
CMS1_k127_568012_5 FeS assembly SUF system protein - - - 0.00000000000000000000000000001839 121.0
CMS1_k127_568012_6 - - - - 0.00000000000001589 76.0
CMS1_k127_5689977_0 malic enzyme K00027,K00029 - 1.1.1.38,1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003925 557.0
CMS1_k127_5689977_1 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 512.0
CMS1_k127_5689977_2 Protein of unknown function (DUF2846) - - - 0.00000000001988 70.0
CMS1_k127_5716852_0 Mate efflux family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312 446.0
CMS1_k127_5716852_1 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 394.0
CMS1_k127_5716852_2 chaperone-mediated protein folding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005313 278.0
CMS1_k127_5716852_3 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000009776 70.0
CMS1_k127_5716888_0 NMT1/THI5 like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 394.0
CMS1_k127_5716888_1 Phospholipase/Carboxylesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 340.0
CMS1_k127_5716888_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006533 280.0
CMS1_k127_5716888_3 SprT-like family - - - 0.000000000000000000000000000000000000000000000000000000000001288 213.0
CMS1_k127_5716888_4 Nacht domain - - - 0.0000000000000000000000000000000000000000002936 183.0
CMS1_k127_5716888_5 Belongs to the UPF0763 family - - - 0.0000000000000000000000059 104.0
CMS1_k127_571835_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 1.513e-239 747.0
CMS1_k127_571835_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 530.0
CMS1_k127_571835_11 Acetyltransferase (GNAT) domain - - - 0.0000000001202 65.0
CMS1_k127_571835_12 potassium channel protein K10716 - - 0.0000000002599 63.0
CMS1_k127_571835_13 - - - - 0.0000671 52.0
CMS1_k127_571835_2 ABC transporter, ATP-binding protein K01990,K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 365.0
CMS1_k127_571835_3 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 312.0
CMS1_k127_571835_4 tigr02757 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 303.0
CMS1_k127_571835_5 PFAM Asparaginase K01424 - 3.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 289.0
CMS1_k127_571835_6 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000003525 194.0
CMS1_k127_571835_7 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.00000000000000000000000000000000000005792 149.0
CMS1_k127_571835_8 ATPase or kinase K06925 - - 0.0000000000000000000000000000000000005552 143.0
CMS1_k127_571835_9 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000004595 121.0
CMS1_k127_5721579_0 5'-nucleotidase K01081 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 347.0
CMS1_k127_5721579_1 Belongs to the carbamoyltransferase HypF family K04656 - - 0.000000000000000000000000000000000000000000000000000000000003139 215.0
CMS1_k127_5721579_2 Hydrogenase maturation protease K03605 - - 0.00000000000000000000000000000000000000003334 158.0
CMS1_k127_5721579_3 Protein of unknown function (DUF2809) - - - 0.00001217 53.0
CMS1_k127_5740324_0 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009493 294.0
CMS1_k127_5740324_1 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.000000000000000000000000000000000000000000000000000001713 207.0
CMS1_k127_5740324_2 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.0000000000000000000000000000000000000000000001758 173.0
CMS1_k127_5740324_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000000000007893 158.0
CMS1_k127_5740324_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000000002173 155.0
CMS1_k127_5740324_5 that it carries out the mismatch recognition step. This protein has a weak ATPase activity - - - 0.000000000000000000000000000000000000002996 160.0
CMS1_k127_5740324_6 - - - - 0.000002566 51.0
CMS1_k127_581058_0 Ribonuclease K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003677 561.0
CMS1_k127_581058_1 Signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 293.0
CMS1_k127_581058_2 DNA polymerase III K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007316 289.0
CMS1_k127_581058_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000000862 190.0
CMS1_k127_581058_4 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000000000000000000000001366 145.0
CMS1_k127_5836903_0 Histidine kinase K02484 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006485 334.0
CMS1_k127_5836903_1 response regulator - - - 0.0000000000000000000000000000000000000000000000000005413 194.0
CMS1_k127_5836903_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000025 48.0
CMS1_k127_5857170_0 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007499 293.0
CMS1_k127_5857170_1 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000005317 255.0
CMS1_k127_5857170_2 dna polymerase iii K10857 - - 0.00000000000000000000000000000000000000000000000002103 188.0
CMS1_k127_5857170_3 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000002476 153.0
CMS1_k127_5857170_4 Oxygen tolerance - - - 0.0000000000000000000000000000000000316 148.0
CMS1_k127_5859167_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 7.121e-212 664.0
CMS1_k127_5866327_0 fructose-bisphosphate aldolase K01624 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 432.0
CMS1_k127_5866327_1 Sulfate permease K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 320.0
CMS1_k127_5866327_2 COG1309 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000386 251.0
CMS1_k127_5893660_0 glutamine synthetase K01915 - 6.3.1.2 2.971e-284 876.0
CMS1_k127_5893660_1 peptidase U32 family K08303 - - 4.925e-207 651.0
CMS1_k127_5893660_2 histidinol phosphate phosphatase K04486 - 3.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 377.0
CMS1_k127_5893660_3 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003985 288.0
CMS1_k127_5893660_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000337 258.0
CMS1_k127_5893660_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000003443 223.0
CMS1_k127_5893660_6 Protein of unknown function DUF89 K09116 - - 0.000000000000000000000000000000000000000000000000000000003322 205.0
CMS1_k127_5893660_7 Protein of unknown function (DUF3972) - - - 0.0000000000000000000000000000000000000000000141 167.0
CMS1_k127_5893660_8 Thioredoxin - - - 0.0000000000000000000000002727 108.0
CMS1_k127_5893660_9 Tetratricopeptide repeat - - - 0.00000000000000000001717 98.0
CMS1_k127_5894745_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 530.0
CMS1_k127_5894745_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 342.0
CMS1_k127_592434_0 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 374.0
CMS1_k127_592434_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004898 241.0
CMS1_k127_592434_2 Uncharacterised protein family (UPF0153) K06940 - - 0.00000000001568 64.0
CMS1_k127_5926152_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 544.0
CMS1_k127_5926152_1 flagellar motor switch protein K02416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 525.0
CMS1_k127_5926152_2 flagellar biosynthesis K02404 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 523.0
CMS1_k127_5926152_3 Na H antiporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 319.0
CMS1_k127_5926152_4 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 310.0
CMS1_k127_5926152_5 Belongs to the sigma-70 factor family K02405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008276 298.0
CMS1_k127_5926152_6 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 289.0
CMS1_k127_5926152_7 flagellar motor switch protein K02417 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002307 285.0
CMS1_k127_5926152_8 COGs COG3786 conserved - - - 0.0000000000000000000000000000000000000000000705 168.0
CMS1_k127_592821_0 coproporphyrinogen oxidase activity K00228 GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0030145,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0046872,GO:0046906,GO:0046914,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 423.0
CMS1_k127_592821_1 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000007589 195.0
CMS1_k127_592821_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000002322 74.0
CMS1_k127_5947678_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006807 286.0
CMS1_k127_5947678_1 AraC family transcriptional regulator - - - 0.0000000000000003083 81.0
CMS1_k127_5957478_0 Nitrogenase cofactor biosynthesis protein NifB K02585 - - 2.521e-270 836.0
CMS1_k127_5957478_1 The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components the iron protein and the molybdenum-iron protein K02588 - 1.18.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 550.0
CMS1_k127_5957478_11 - - - - 0.0000007588 51.0
CMS1_k127_5957478_2 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004115 517.0
CMS1_k127_5957478_3 SIR2-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005238 419.0
CMS1_k127_5957478_4 COG4886 Leucine-rich repeat (LRR) protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003605 359.0
CMS1_k127_5957478_5 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001111 270.0
CMS1_k127_5957478_6 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.000000000000000000000000000000000000000000002525 169.0
CMS1_k127_5957478_7 - - - - 0.0000000000000000000000000000000009934 131.0
CMS1_k127_5957478_8 Rop-like - - - 0.000000000000001176 78.0
CMS1_k127_5957478_9 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 0.00000000005717 73.0
CMS1_k127_5964056_0 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008748 499.0
CMS1_k127_5964056_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001844 285.0
CMS1_k127_5964056_2 tRNA nucleotidyltransferase poly(A) polymerase K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000001809 248.0
CMS1_k127_5964056_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000004696 192.0
CMS1_k127_5964056_4 - - - - 0.0000001054 55.0
CMS1_k127_5964056_5 - - - - 0.0000001197 55.0
CMS1_k127_5964056_6 - - - - 0.000002092 49.0
CMS1_k127_596526_0 lipopolysaccharide core region biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 324.0
CMS1_k127_596526_1 heptosyltransferase ii K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 298.0
CMS1_k127_6012021_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.25e-266 826.0
CMS1_k127_6012021_1 PAS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002529 303.0
CMS1_k127_6012021_2 chemotaxis sensory transducer K03406 - - 0.00000000000000000000000000000000002484 154.0
CMS1_k127_6012021_3 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000003182 124.0
CMS1_k127_6012021_4 Heat shock protein DnaJ domain protein - - - 0.000000000000000000008264 103.0
CMS1_k127_6020215_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.872e-244 769.0
CMS1_k127_6020215_1 general secretion pathway protein K02457,K10926 - - 0.000000000000000000000000000000001635 134.0
CMS1_k127_6020215_2 Ggdef domain containing protein - - - 0.00000000008601 69.0
CMS1_k127_6032258_0 COG4886 Leucine-rich repeat (LRR) protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 441.0
CMS1_k127_6032258_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 380.0
CMS1_k127_6032258_2 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000369 307.0
CMS1_k127_603921_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000004874 193.0
CMS1_k127_603921_1 Glycosyl transferases group 1 - - - 0.0000000000000001126 83.0
CMS1_k127_6044117_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005849 523.0
CMS1_k127_6044117_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 370.0
CMS1_k127_6044117_2 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 300.0
CMS1_k127_6044117_3 response regulator K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003041 261.0
CMS1_k127_6056497_0 PFAM FecR protein - - - 0.000000000000000000000000002206 125.0
CMS1_k127_6056497_1 DnaJ domain protein K05801 - - 0.000000000009346 68.0
CMS1_k127_6075076_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 324.0
CMS1_k127_6075076_1 Dipeptidase K01270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002607 284.0
CMS1_k127_6108963_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003487 527.0
CMS1_k127_6108963_1 Sodium calcium exchanger membrane K07300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 464.0
CMS1_k127_6108963_2 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000002191 171.0
CMS1_k127_6108963_3 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000009251 136.0
CMS1_k127_6139965_0 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 314.0
CMS1_k127_6139965_1 PFAM amine oxidase K00274 - 1.4.3.4 0.000000000000000000000000000000000000000000000000000006733 196.0
CMS1_k127_6139965_2 Ceramidase - - - 0.000000000000000000000000000000000000005809 153.0
CMS1_k127_6139965_3 CAAX protease self-immunity K07052 - - 0.0000000000000000000001053 105.0
CMS1_k127_6139965_4 Sulphur transport K07112 - - 0.0000000000005495 71.0
CMS1_k127_6147516_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 465.0
CMS1_k127_6147516_1 mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004523 265.0
CMS1_k127_6147516_2 domain protein K09944 - - 0.00000000000000000000000000000000000004608 147.0
CMS1_k127_6152979_0 Radical SAM - - - 1.774e-203 643.0
CMS1_k127_6152979_1 Methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 306.0
CMS1_k127_6152979_2 NAD(P)H-binding - - - 0.0000000000000000000000000000000000000000000000000000113 196.0
CMS1_k127_6152979_3 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000001172 126.0
CMS1_k127_6205335_0 Belongs to the SEDS family K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 476.0
CMS1_k127_6205335_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 379.0
CMS1_k127_6205335_2 Fibronectin type 3 domain-containing protein K06882 - - 0.0000000000000000000000000002605 120.0
CMS1_k127_6277387_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006713 291.0
CMS1_k127_6277387_1 receptor - - - 0.0000000000000000000000000000000000000000000000000000000334 220.0
CMS1_k127_6277387_2 Protein of unknown function (DUF3450) - - - 0.000000000000000000000000000000000000000000000000001358 191.0
CMS1_k127_6277387_3 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000000000000000000000000000000000000568 172.0
CMS1_k127_6277387_4 TonB system transport protein K03561 - - 0.000000000000000000000000001303 118.0
CMS1_k127_633842_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.397e-284 883.0
CMS1_k127_633842_1 diguanylate cyclase - - - 5.702e-205 654.0
CMS1_k127_633842_10 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000000000000001283 173.0
CMS1_k127_633842_11 hmm pf01205 - - - 0.00000000000000000000000000000000000000001357 160.0
CMS1_k127_633842_12 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000006246 162.0
CMS1_k127_633842_13 - - - - 0.000000000000000000000000007647 115.0
CMS1_k127_633842_2 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 424.0
CMS1_k127_633842_3 malonyl coa-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 416.0
CMS1_k127_633842_4 Belongs to the TtcA family K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002761 347.0
CMS1_k127_633842_5 Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively K18284 - 3.2.2.30,3.2.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 323.0
CMS1_k127_633842_6 sodium:proton antiporter activity K03316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003266 275.0
CMS1_k127_633842_7 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002305 263.0
CMS1_k127_633842_8 peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000001359 219.0
CMS1_k127_633842_9 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000002841 200.0
CMS1_k127_66902_0 Hydrolase K12251 - 3.5.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 410.0
CMS1_k127_66902_1 Belongs to the agmatine deiminase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008394 358.0
CMS1_k127_66902_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 336.0
CMS1_k127_66902_3 Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and or cell division K08306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 307.0
CMS1_k127_66902_4 Transglycosylase SLT domain K08305 - - 0.000000000000000000000000000000000000004878 158.0
CMS1_k127_703011_0 Hep Hag repeat protein - - - 0.00000000000000000000000000000000001927 152.0
CMS1_k127_703011_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000005095 81.0
CMS1_k127_74036_0 arginine decarboxylase K01585 - 4.1.1.19 3.566e-254 796.0
CMS1_k127_74036_1 COGs COG0069 Glutamate synthase domain 2 - - - 8.62e-241 756.0
CMS1_k127_74036_10 VanZ like family - - - 0.000001735 54.0
CMS1_k127_74036_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 592.0
CMS1_k127_74036_3 Aminotransferase K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 504.0
CMS1_k127_74036_4 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 352.0
CMS1_k127_74036_5 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 287.0
CMS1_k127_74036_6 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000284 256.0
CMS1_k127_74036_7 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000007231 219.0
CMS1_k127_74036_8 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000001305 178.0
CMS1_k127_74036_9 Chaperone for flagella basal body P-ring formation K02386 - - 0.0000000000000000000000000000000002084 143.0
CMS1_k127_77460_0 abc transporter atp-binding protein - - - 1.646e-285 883.0
CMS1_k127_77460_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 319.0
CMS1_k127_77460_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000008389 239.0
CMS1_k127_77460_3 COG2199 FOG GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000003803 226.0
CMS1_k127_77460_4 Rhodanese-like domain - - - 0.0000000000000000000000000000000000003522 144.0
CMS1_k127_77460_6 Chemotaxis phosphatase CheX - - - 0.000000000000000000002046 104.0
CMS1_k127_77460_7 Translation initiation factor SUI1 K03113 - - 0.00000000000005654 76.0
CMS1_k127_77460_8 von Willebrand factor (vWF) type A domain - - - 0.00000000008673 70.0
CMS1_k127_77460_9 Pfam Colicin V production protein K03558 - - 0.00000000131 66.0
CMS1_k127_776973_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007547 297.0
CMS1_k127_776973_1 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000043 180.0
CMS1_k127_776973_2 PhoQ Sensor - - - 0.0000000000000000000000000004702 127.0
CMS1_k127_805551_0 PFAM peptidase S16 lon domain protein - - - 1.622e-223 718.0
CMS1_k127_805551_1 Uncharacterised protein family (UPF0014) K02069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001925 262.0
CMS1_k127_805551_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002889 259.0
CMS1_k127_805551_3 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003209 258.0
CMS1_k127_805551_4 TIGRFAM DJ-1 family protein K03152 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000009657 238.0
CMS1_k127_805551_5 Histidine kinase K20974 - 2.7.13.3 0.000000000000000000000000000000000000000000000002101 179.0
CMS1_k127_83479_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.606e-227 715.0
CMS1_k127_83479_1 outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004455 352.0
CMS1_k127_83479_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007284 317.0
CMS1_k127_861377_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 7.51e-243 754.0
CMS1_k127_861377_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 6.276e-239 742.0
CMS1_k127_861377_10 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007127 277.0
CMS1_k127_861377_11 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001098 267.0
CMS1_k127_861377_12 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000000000004985 241.0
CMS1_k127_861377_13 Serine hydrolase K07002 - - 0.0000000000000000000000000000000000000000000000000009488 188.0
CMS1_k127_861377_14 - - - - 0.00000000000000000000000000000000000000000000000001323 192.0
CMS1_k127_861377_15 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000000000000004742 168.0
CMS1_k127_861377_16 chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000003176 177.0
CMS1_k127_861377_17 Flagellar biosynthetic protein FliQ K02420 - - 0.00000000000000000000000000000008933 126.0
CMS1_k127_861377_18 AMIN domain - - - 0.00000000000000000000003345 107.0
CMS1_k127_861377_19 Cytochrome c554 and c-prime - - - 0.00000000000000000001975 92.0
CMS1_k127_861377_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009572 569.0
CMS1_k127_861377_20 Protein of unknown function (DUF493) - - - 0.000000000000000002685 87.0
CMS1_k127_861377_21 Thioredoxin-like - - - 0.000000000000000003222 91.0
CMS1_k127_861377_22 - - - - 0.00000000000000002367 85.0
CMS1_k127_861377_23 - - - - 0.000000000000000138 82.0
CMS1_k127_861377_24 Nitrate reductase delta subunit - - - 0.0000000000000266 73.0
CMS1_k127_861377_25 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000004624 81.0
CMS1_k127_861377_3 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 516.0
CMS1_k127_861377_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 440.0
CMS1_k127_861377_5 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009875 437.0
CMS1_k127_861377_6 RNA-binding protein homologous to eukaryotic snRNP - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 368.0
CMS1_k127_861377_7 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 350.0
CMS1_k127_861377_8 cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 327.0
CMS1_k127_861377_9 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 315.0
CMS1_k127_873127_0 M18 family aminopeptidase K01267 - 3.4.11.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 374.0
CMS1_k127_873127_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 301.0
CMS1_k127_873127_2 AI-2E family transporter K11744 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0009372,GO:0009987,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0044764,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000307 244.0
CMS1_k127_873164_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 6.196e-212 665.0
CMS1_k127_873164_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 591.0
CMS1_k127_873164_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 459.0
CMS1_k127_873164_3 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 336.0
CMS1_k127_873164_4 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000004675 161.0
CMS1_k127_873164_5 DnaJ molecular chaperone homology domain - - - 0.00000000000000000000000002172 111.0
CMS1_k127_905180_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 409.0
CMS1_k127_905180_1 flagellar hook-associated protein K02396 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004597 395.0
CMS1_k127_905180_2 - - - - 0.000000000000000000000000000000000000002052 151.0
CMS1_k127_905180_3 Rod binding protein - - - 0.00000000000000000000001263 104.0
CMS1_k127_905895_0 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 463.0
CMS1_k127_905895_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 337.0
CMS1_k127_905895_10 RNA-binding protein K06960 - - 0.0000000000000000000000004305 106.0
CMS1_k127_905895_11 Global regulator protein family - - - 0.000000001697 61.0
CMS1_k127_905895_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 297.0
CMS1_k127_905895_3 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 287.0
CMS1_k127_905895_4 DNA helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000003432 235.0
CMS1_k127_905895_5 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000001535 196.0
CMS1_k127_905895_6 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000004241 193.0
CMS1_k127_905895_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000000000001982 181.0
CMS1_k127_905895_8 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000000000000002408 138.0
CMS1_k127_905895_9 SPTR Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000001088 117.0
CMS1_k127_938796_0 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003421 588.0
CMS1_k127_938796_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 482.0
CMS1_k127_938796_10 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000000000000003659 235.0
CMS1_k127_938796_11 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000001126 188.0
CMS1_k127_938796_12 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000000002401 179.0
CMS1_k127_938796_13 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000000000000000000000000108 163.0
CMS1_k127_938796_14 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000002709 163.0
CMS1_k127_938796_15 Mut7-C RNAse domain K09122 - - 0.000000000000000000000000000000000000000006862 160.0
CMS1_k127_938796_16 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000000000000001609 145.0
CMS1_k127_938796_17 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000008623 121.0
CMS1_k127_938796_18 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000143 111.0
CMS1_k127_938796_19 Protein of unknown function (DUF962) - - - 0.00000000000000000000000009099 112.0
CMS1_k127_938796_2 alanine dehydrogenase K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005702 447.0
CMS1_k127_938796_3 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 388.0
CMS1_k127_938796_4 Major facilitator superfamily K08167 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 346.0
CMS1_k127_938796_5 ribosomal protein L3 K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009381 289.0
CMS1_k127_938796_6 ATPase (AAA K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 298.0
CMS1_k127_938796_7 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001155 280.0
CMS1_k127_938796_8 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008723 273.0
CMS1_k127_938796_9 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004571 239.0
CMS1_k127_947434_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008771 492.0
CMS1_k127_947434_1 phosphohydrolase (DHH superfamily) K07097 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006859 424.0
CMS1_k127_947434_2 Type II secretion system K02455,K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007163 321.0
CMS1_k127_947434_3 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000004049 149.0
CMS1_k127_947434_4 Type II secretion system protein E K02652 - - 0.0000000000000000007337 87.0
CMS1_k127_948058_0 Flagellar hook protein flgE K02390 GO:0005575,GO:0005623,GO:0009288,GO:0009425,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464 - 8.71e-202 651.0
CMS1_k127_948058_1 thymidylate synthase (FAD) activity K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006135 522.0
CMS1_k127_948058_10 Uncharacterized conserved protein (DUF2249) - - - 0.00001271 50.0
CMS1_k127_948058_2 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 488.0
CMS1_k127_948058_3 HDOD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 385.0
CMS1_k127_948058_4 Flagellar basal body protein K02390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001848 292.0
CMS1_k127_948058_5 Belongs to the heme-copper respiratory oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009414 252.0
CMS1_k127_948058_6 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00000000000000000000000000000000000000000000000000000003629 202.0
CMS1_k127_948058_7 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000008081 163.0
CMS1_k127_948058_8 Protein conserved in bacteria K09705 - - 0.00000000000000000000001525 102.0
CMS1_k127_950302_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000001599 121.0
CMS1_k127_961309_0 Oxidoreductase K00174 - 1.2.7.11,1.2.7.3 1.146e-205 644.0
CMS1_k127_961309_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 524.0
CMS1_k127_961309_2 Oxidoreductase K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000538 518.0
CMS1_k127_961309_3 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 404.0
CMS1_k127_961309_4 oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 320.0
CMS1_k127_961309_5 ABC transporter K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 323.0
CMS1_k127_961309_6 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009532 267.0
CMS1_k127_961309_7 2-oxoglutarate acceptor oxidoreductase K00176 - 1.2.7.3 0.000000000000000000000000000000000000000000000000000000007129 199.0
CMS1_k127_961309_8 Cell division protein FtsX K09811 - - 0.00000000000000000000000000000000002947 145.0
CMS1_k127_961309_9 Heavy-metal-associated domain - - - 0.000000000000000000000000000000001938 131.0
CMS1_k127_974474_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1165.0
CMS1_k127_974474_1 Histidine kinase - - - 7.552e-249 787.0
CMS1_k127_974474_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000002096 177.0
CMS1_k127_974474_3 Response regulator receiver K07814 - - 0.000000000000000000000000000000000000003109 149.0
CMS1_k127_974474_4 bacterial-type flagellum assembly K13626 - - 0.00007066 46.0
CMS1_k127_976995_0 UPF0313 protein - - - 0.0 1025.0
CMS1_k127_976995_1 MltA specific insert domain K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 316.0
CMS1_k127_976995_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 305.0
CMS1_k127_976995_3 general stress protein - - - 0.000000000000000000000000000000000000000000000001409 180.0
CMS1_k127_976995_4 Histidine kinase - - - 0.000000000000000000000000003157 119.0
CMS1_k127_976995_5 Permease MlaE K02066 - - 0.00000000000001927 77.0
CMS1_k127_977576_0 COG1579 Zn-ribbon protein possibly nucleic acid-binding K07164,K22391 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001869 274.0
CMS1_k127_977576_1 dinuclear metal center protein, YbgI K22391 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000745 221.0
CMS1_k127_977576_2 3-deoxy-d-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000002199 213.0
CMS1_k127_986280_0 COG0631 Serine threonine protein phosphatase K12132 - 2.7.11.1 1.394e-270 842.0
CMS1_k127_986280_1 Formate/nitrite transporter K21993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 457.0
CMS1_k127_986280_2 Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide K01725 - 4.2.1.104 0.000000000000000000000000000000000000000000000000000000000000000000003381 237.0
CMS1_k127_986280_3 - - - - 0.00004682 47.0
CMS1_k127_987354_0 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K15576 - - 4.691e-255 790.0
CMS1_k127_987354_1 ABC transporter K15555,K15578 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 429.0
CMS1_k127_987354_2 COG0600 ABC-type nitrate sulfonate bicarbonate transport system permease component K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 426.0
CMS1_k127_987354_3 - - - - 0.00000000000000000000000000000000000000000000000000003013 201.0
CMS1_k127_994780_0 cofactor biosynthesis protein NifE K02587 - - 8.452e-259 803.0
CMS1_k127_994780_1 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 4.828e-223 722.0
CMS1_k127_994780_10 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000001356 230.0
CMS1_k127_994780_11 Dinitrogenase iron-molybdenum cofactor biosynthesis protein K02596 - - 0.00000000000000000000000000000000000000000000000000000001895 200.0
CMS1_k127_994780_12 Ferredoxin - - - 0.00000000000000000000000000000000000000000000000000004796 191.0
CMS1_k127_994780_13 Nitrogen fixation protein NifW K02595 - - 0.0000000000000000000000000000000000000000000000000003185 187.0
CMS1_k127_994780_14 Ferredoxin - - - 0.000000000000000000000000000000000000000000000007481 172.0
CMS1_k127_994780_15 MarR family - - - 0.000000000000000000000000000003577 124.0
CMS1_k127_994780_16 oxygen carrier activity - - - 0.0000000000000000000000000007976 116.0
CMS1_k127_994780_19 peptidyl-prolyl cis-trans isomerase activity K02597,K07533 - 5.2.1.8 0.000000000000000000008143 96.0
CMS1_k127_994780_2 STAS domain K03321 - - 9.948e-218 689.0
CMS1_k127_994780_20 oxidoreductase activity, acting on CH-OH group of donors - - - 0.0000000000000006298 84.0
CMS1_k127_994780_3 Belongs to the NifD NifK NifE NifN family K02592 - - 3.172e-213 670.0
CMS1_k127_994780_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 383.0
CMS1_k127_994780_5 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008211 347.0
CMS1_k127_994780_6 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009348 306.0
CMS1_k127_994780_7 Low-potential electron donor to a number of redox enzymes K03839 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001403 273.0
CMS1_k127_994780_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001938 249.0
CMS1_k127_994780_9 Nitrogen fixation protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000006909 230.0