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Overview

ID MAG00715
Name DPH3_bin.5
Sample SMP0021
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Nitrosomonadaceae
Genus Nitrosomonas
Species
Assembly information
Completeness (%) 84.66
Contamination (%) 0.21
GC content (%) 45.0
N50 (bp) 14,818
Genome size (bp) 2,235,020

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2236

Gene name Description KEGG GOs EC E-value Score Sequence
DPH3_k127_10013919_0 diguanylate cyclase K02488 - 2.7.7.65 1.11e-236 736.0
DPH3_k127_10013919_1 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 533.0
DPH3_k127_10013919_2 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000002131 244.0
DPH3_k127_10013919_3 - - - - 0.000000000000000000000000000000000000000000000000000000001782 202.0
DPH3_k127_10013919_4 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.00000000000000000000000000000004647 128.0
DPH3_k127_10013919_5 radical SAM domain protein - - - 0.0000000000000000007456 90.0
DPH3_k127_10302917_0 von Willebrand factor, type A - - - 0.0 1508.0
DPH3_k127_10302917_1 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 8.506e-318 974.0
DPH3_k127_10302917_2 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008449 590.0
DPH3_k127_10302917_3 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007966 545.0
DPH3_k127_10302917_4 ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000002086 250.0
DPH3_k127_10302917_5 - - - - 0.00000000000000000000000000000000000001491 144.0
DPH3_k127_10302917_6 Histidine kinase K07680,K07778,K11617,K14988 - 2.7.13.3 0.000000000983 62.0
DPH3_k127_1030383_0 ABC transporter K06147 - - 0.0 1097.0
DPH3_k127_1030383_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 0.0 999.0
DPH3_k127_1030383_2 Domain of unknown function (DUF1854) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093 291.0
DPH3_k127_1030383_3 PFAM chemotaxis K02660 - - 0.000000000000000000000000000000000000000002945 159.0
DPH3_k127_1030383_4 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000000000000000000002969 114.0
DPH3_k127_10395165_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009974 273.0
DPH3_k127_10395165_1 D-isomer specific 2-hydroxyacid dehydrogenase K12972 - 1.1.1.79,1.1.1.81 0.0000000000000000000000000000000000000000000001758 180.0
DPH3_k127_10395165_2 PFAM IstB domain protein ATP-binding protein - - - 0.0008326 44.0
DPH3_k127_10507442_0 Alginate export - - - 1.726e-319 982.0
DPH3_k127_10507442_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000006714 99.0
DPH3_k127_10507442_3 - - - - 0.00000006132 53.0
DPH3_k127_10510855_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 1.995e-230 715.0
DPH3_k127_10510855_1 Predicted membrane protein (DUF2254) - - - 3.213e-228 712.0
DPH3_k127_10510855_10 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000001237 87.0
DPH3_k127_10510855_11 glucose-6-phosphate dehydrogenase activity K00036 - 1.1.1.363,1.1.1.49 0.000000000007852 74.0
DPH3_k127_10510855_12 PFAM Transposase, IS4-like - - - 0.00000001415 57.0
DPH3_k127_10510855_13 PFAM Transposase, IS4-like - - - 0.0000001105 55.0
DPH3_k127_10510855_2 FtsX-like permease family K02004 - - 4.464e-215 674.0
DPH3_k127_10510855_3 SMART cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 439.0
DPH3_k127_10510855_4 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 383.0
DPH3_k127_10510855_5 XFP C-terminal domain K01621 - 4.1.2.22,4.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 327.0
DPH3_k127_10510855_6 HlyD family secretion protein K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004769 244.0
DPH3_k127_10510855_7 Domain of unknown function (DUF1840) - - - 0.000000000000000000000000000000000000000000000000002162 183.0
DPH3_k127_10510855_8 6-phosphogluconate dehydrogenase K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000005962 145.0
DPH3_k127_10510855_9 transposase activity - - - 0.0000000000000000000000002097 105.0
DPH3_k127_105362_0 FtsX-like permease family K02004 - - 0.0 1514.0
DPH3_k127_105362_1 Heavy metal transport detoxification protein K17686,K19597 - 3.6.3.54 0.0 1416.0
DPH3_k127_105362_10 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 499.0
DPH3_k127_105362_11 TIGRFAM Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 497.0
DPH3_k127_105362_12 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003471 499.0
DPH3_k127_105362_13 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 489.0
DPH3_k127_105362_14 Short-chain dehydrogenase reductase SDR K00059,K03793 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.100,1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 479.0
DPH3_k127_105362_15 MlaA lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 474.0
DPH3_k127_105362_16 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 432.0
DPH3_k127_105362_17 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 415.0
DPH3_k127_105362_18 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 377.0
DPH3_k127_105362_19 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008867 364.0
DPH3_k127_105362_2 PFAM Prenyltransferase squalene oxidase K06045 - 4.2.1.129,5.4.99.17 0.0 1306.0
DPH3_k127_105362_20 MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 318.0
DPH3_k127_105362_21 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000007649 244.0
DPH3_k127_105362_22 Phosphorylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000346 250.0
DPH3_k127_105362_23 Protein of unknown function, DUF393 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002758 239.0
DPH3_k127_105362_24 HIT domain K02503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006379 237.0
DPH3_k127_105362_25 phosphoribosyl-ATP diphosphatase activity K01523 - 3.6.1.31 0.0000000000000000000000000000000000000000000000000000000000002497 211.0
DPH3_k127_105362_26 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000000000000000000000000000000000001494 192.0
DPH3_k127_105362_27 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000004557 184.0
DPH3_k127_105362_28 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.000000000000000000000000000000000000000000000000003018 186.0
DPH3_k127_105362_29 - - - - 0.0000000000000000000000000000000000000000000000003107 177.0
DPH3_k127_105362_3 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 - - 0.0 1034.0
DPH3_k127_105362_30 - - - - 0.000000000000000000000000000000000000001146 150.0
DPH3_k127_105362_31 PFAM Heavy metal transport detoxification protein K07213 - - 0.000000000000000000000000000000004586 128.0
DPH3_k127_105362_32 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000001325 103.0
DPH3_k127_105362_34 TIGRFAM methyltransferase FkbM family - - - 0.00000000000000002226 86.0
DPH3_k127_105362_35 - - - - 0.000000000002573 66.0
DPH3_k127_105362_4 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 1.795e-233 728.0
DPH3_k127_105362_5 Lipocalin-like domain - - - 7.135e-233 722.0
DPH3_k127_105362_6 LppC putative lipoprotein K07121 - - 8.846e-216 676.0
DPH3_k127_105362_7 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 3.324e-208 649.0
DPH3_k127_105362_8 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 4.404e-207 646.0
DPH3_k127_105362_9 'signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 560.0
DPH3_k127_10555337_0 DHH family K07462 - - 0.0 1137.0
DPH3_k127_10555337_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 3.899e-278 856.0
DPH3_k127_10555337_2 PhoH-like protein K06217 - - 2.206e-197 617.0
DPH3_k127_10555337_3 Transporter associated domain K06189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 551.0
DPH3_k127_10555337_4 PFAM MgtC SapB transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 511.0
DPH3_k127_10555337_5 Restriction endonuclease, type I, EcoRI, R subunit Type III, Res subunit, N-terminal K01153 - 3.1.21.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 488.0
DPH3_k127_10555337_6 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 293.0
DPH3_k127_10555337_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000198 222.0
DPH3_k127_10555337_8 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000007239 175.0
DPH3_k127_10560903_0 Histidine kinase K20974 - 2.7.13.3 0.0 2205.0
DPH3_k127_10560903_1 Protein conserved in bacteria - - - 3.986e-237 738.0
DPH3_k127_10560903_2 Putative diguanylate phosphodiesterase - - - 2.743e-211 662.0
DPH3_k127_10560903_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 301.0
DPH3_k127_10560903_4 Transposase - - - 0.00000000000000000000000000000000000003491 143.0
DPH3_k127_10560903_5 TIGRFAM Undecaprenyl-phosphate glucose phosphotransferase, WcaJ K03606 - - 0.000000000000000001287 89.0
DPH3_k127_1059025_0 Trypsin K04771 - 3.4.21.107 6.22e-309 949.0
DPH3_k127_1059025_1 Peptidase dimerisation domain - - - 9.338e-255 786.0
DPH3_k127_1059025_10 - - - - 0.0000000000000000000000000000004651 125.0
DPH3_k127_1059025_11 Bacterial antitoxin of type II TA system, VapB - - - 0.000000000000000000000000004188 111.0
DPH3_k127_1059025_12 Antitoxin component of a toxin-antitoxin (TA) module K18923 - - 0.00000000000000000000001147 102.0
DPH3_k127_1059025_2 DnaJ molecular chaperone homology domain - - - 1.93e-214 669.0
DPH3_k127_1059025_3 Peroxide stress protein YaaA K09861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 494.0
DPH3_k127_1059025_4 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 426.0
DPH3_k127_1059025_5 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002412 304.0
DPH3_k127_1059025_6 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000009748 231.0
DPH3_k127_1059025_7 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.0000000000000000000000000000000000000000000000000002943 185.0
DPH3_k127_1059025_8 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000000000000000000000000000000000000000000000002499 183.0
DPH3_k127_1059025_9 TIR domain - - - 0.00000000000000000000000000000000000000000000000000802 185.0
DPH3_k127_10608045_0 Belongs to the GPI family K01810 - 5.3.1.9 0.0 1063.0
DPH3_k127_10608045_1 Cytochrome c - - - 0.0 1050.0
DPH3_k127_10608045_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 3.052e-308 946.0
DPH3_k127_10667817_0 ABC transporter C-terminal domain K15738 - - 0.0 1217.0
DPH3_k127_10667817_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 2.021e-205 642.0
DPH3_k127_10667817_10 Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000007877 207.0
DPH3_k127_10667817_11 FtsZ-dependent cytokinesis - - - 0.0000000000000000000000000000000000000000007044 160.0
DPH3_k127_10667817_2 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008703 462.0
DPH3_k127_10667817_3 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 449.0
DPH3_k127_10667817_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 412.0
DPH3_k127_10667817_5 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 410.0
DPH3_k127_10667817_6 Part of a membrane complex involved in electron transport K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 410.0
DPH3_k127_10667817_7 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002154 278.0
DPH3_k127_10667817_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003142 269.0
DPH3_k127_10667817_9 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000002908 209.0
DPH3_k127_10699198_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.0 1120.0
DPH3_k127_10699198_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 4.256e-306 939.0
DPH3_k127_10699198_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001724 248.0
DPH3_k127_10699198_11 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000002905 201.0
DPH3_k127_10699198_12 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000002752 69.0
DPH3_k127_10699198_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005983 541.0
DPH3_k127_10699198_3 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008724 532.0
DPH3_k127_10699198_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 494.0
DPH3_k127_10699198_5 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006115 413.0
DPH3_k127_10699198_6 PFAM Glycoside hydrolase, family 19, catalytic K03791 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 369.0
DPH3_k127_10699198_7 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 339.0
DPH3_k127_10699198_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002364 279.0
DPH3_k127_10699198_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004811 273.0
DPH3_k127_10811009_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1734.0
DPH3_k127_10811009_1 ribonuclease II K01147 - 3.1.13.1 0.0 1165.0
DPH3_k127_10811009_10 - - - - 0.000003043 49.0
DPH3_k127_10811009_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 6.101e-266 819.0
DPH3_k127_10811009_3 Peptidase family M23 K08259 - 3.4.24.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 580.0
DPH3_k127_10811009_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 547.0
DPH3_k127_10811009_5 Cytochrome C1 family K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 455.0
DPH3_k127_10811009_6 Glutathione S-transferase, N-terminal domain K03599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 399.0
DPH3_k127_10811009_7 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 395.0
DPH3_k127_10811009_8 Protein of unknown function (DUF721) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 285.0
DPH3_k127_10811009_9 stringent starvation protein B K03600 - - 0.000000000000000000000000000000000000000000000000000000000000000000006661 236.0
DPH3_k127_10959463_0 Lipase (class 3) - - - 7.7e-238 738.0
DPH3_k127_10959463_1 PFAM UPF0103 Mediator of ErbB2-driven cell motility K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 492.0
DPH3_k127_10959463_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009588 437.0
DPH3_k127_10959463_3 AMMECR1 - - - 0.0000000000000000000000000000000000000000000000000000000000000944 213.0
DPH3_k127_10959463_4 AMMECR1 - - - 0.000000000000000000000000000000000000001712 148.0
DPH3_k127_10959463_5 ISXO2-like transposase domain - - - 0.0001028 45.0
DPH3_k127_11122884_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 2274.0
DPH3_k127_11122884_1 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 506.0
DPH3_k127_11122884_2 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 405.0
DPH3_k127_11122884_3 PIN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000514 258.0
DPH3_k127_11122884_4 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.000132 48.0
DPH3_k127_11128040_0 Mechanosensitive ion channel K05802,K22051 - - 0.0 1582.0
DPH3_k127_11128040_1 DDE superfamily endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 515.0
DPH3_k127_11128040_2 McrBC 5-methylcytosine restriction system component K19147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001681 274.0
DPH3_k127_11128040_3 DsrE/DsrF-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000004433 226.0
DPH3_k127_11128040_4 - - - - 0.000000000000000000000000000000000000000002488 159.0
DPH3_k127_11128040_5 Putative transposase - - - 0.00000000000000000000000000000000000000002972 156.0
DPH3_k127_11128040_6 PFAM Integrase, catalytic core K07497 - - 0.000000000000000001421 87.0
DPH3_k127_11138453_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 0.0 1315.0
DPH3_k127_11138453_1 Na H antiporter NhaC K03315 - - 2.689e-272 842.0
DPH3_k127_11138453_10 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 378.0
DPH3_k127_11138453_11 oxidoreductase DsbE K02199 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 360.0
DPH3_k127_11138453_12 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004595 307.0
DPH3_k127_11138453_13 PFAM Alkyl hydroperoxide reductase K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 295.0
DPH3_k127_11138453_14 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003194 277.0
DPH3_k127_11138453_15 Outer membrane lipoprotein Slp family K07285 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001885 277.0
DPH3_k127_11138453_16 SelR domain K07305,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000462 265.0
DPH3_k127_11138453_17 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001587 222.0
DPH3_k127_11138453_18 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000000000000000000000003675 191.0
DPH3_k127_11138453_19 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.0000000000008281 70.0
DPH3_k127_11138453_2 MFS_1 like family - - - 1.62e-256 792.0
DPH3_k127_11138453_3 Tetratricopeptide repeat K02200 - - 4.348e-247 767.0
DPH3_k127_11138453_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 8.431e-235 728.0
DPH3_k127_11138453_5 alcohol dehydrogenase K00001 - 1.1.1.1 6.483e-217 677.0
DPH3_k127_11138453_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000567 610.0
DPH3_k127_11138453_7 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000216 571.0
DPH3_k127_11138453_8 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 487.0
DPH3_k127_11138453_9 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006649 399.0
DPH3_k127_11154338_0 DinB superfamily - - - 0.0 1434.0
DPH3_k127_11154338_1 SNARE associated Golgi protein - - - 0.0 1339.0
DPH3_k127_11154338_10 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 442.0
DPH3_k127_11154338_11 2-oxoacid acceptor oxidoreductase, gamma subunit, pyruvate 2-ketoisovalerate K00172 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003174 397.0
DPH3_k127_11154338_12 Predicted periplasmic protein (DUF2092) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 355.0
DPH3_k127_11154338_13 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 308.0
DPH3_k127_11154338_14 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 296.0
DPH3_k127_11154338_15 - - - - 0.00000000000000000000000000000000000000000000000000003145 196.0
DPH3_k127_11154338_16 Protein of unknown function (DUF3313) - - - 0.000000000000000000000000000000001208 139.0
DPH3_k127_11154338_17 Lysozyme inhibitor LprI - - - 0.00000000000000000000001008 102.0
DPH3_k127_11154338_2 AMP-binding enzyme C-terminal domain K00666 - - 4.612e-260 811.0
DPH3_k127_11154338_3 PFAM aminotransferase, class I K00842,K14155 - 4.4.1.8 1.701e-240 746.0
DPH3_k127_11154338_4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K07755 - 2.1.1.137 3.662e-232 719.0
DPH3_k127_11154338_5 Radical SAM superfamily - - - 8.102e-205 638.0
DPH3_k127_11154338_6 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 4.466e-194 614.0
DPH3_k127_11154338_7 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005016 530.0
DPH3_k127_11154338_8 ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 508.0
DPH3_k127_11154338_9 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005882 494.0
DPH3_k127_11220066_0 Cysteine-rich domain - - - 0.0 1305.0
DPH3_k127_11220066_1 pilus assembly protein FimV K08086 - - 0.0 1237.0
DPH3_k127_11220066_10 Nucleoside H+ symporter K05820 - - 6.36e-246 760.0
DPH3_k127_11220066_11 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K10764 - 2.5.1.48 4.372e-243 752.0
DPH3_k127_11220066_12 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 2.496e-239 740.0
DPH3_k127_11220066_13 Psort location CytoplasmicMembrane, score 10.00 - - - 3.987e-238 740.0
DPH3_k127_11220066_14 AAA domain K02450 - - 1.428e-229 715.0
DPH3_k127_11220066_15 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 6.939e-215 668.0
DPH3_k127_11220066_16 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 571.0
DPH3_k127_11220066_17 MotA/TolQ/ExbB proton channel family K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 558.0
DPH3_k127_11220066_18 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 553.0
DPH3_k127_11220066_19 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008328 532.0
DPH3_k127_11220066_2 - - - - 0.0 1160.0
DPH3_k127_11220066_20 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 503.0
DPH3_k127_11220066_21 tRNA (guanine-N7-)-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 441.0
DPH3_k127_11220066_22 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004397 413.0
DPH3_k127_11220066_23 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000564 395.0
DPH3_k127_11220066_24 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009315 374.0
DPH3_k127_11220066_25 deaminase zinc-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 364.0
DPH3_k127_11220066_26 Sporulation related domain K03749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007912 350.0
DPH3_k127_11220066_27 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506 324.0
DPH3_k127_11220066_28 PFAM Outer membrane protein, OmpA MotB, C-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005421 324.0
DPH3_k127_11220066_29 Colicin V production K03558 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 299.0
DPH3_k127_11220066_3 ABC transporter transmembrane region K06147 - - 0.0 1108.0
DPH3_k127_11220066_30 Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006851 287.0
DPH3_k127_11220066_31 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005509 259.0
DPH3_k127_11220066_32 - - - - 0.00000000000000000000000000000000000000000000000000000000001596 206.0
DPH3_k127_11220066_33 Protein of unknown function (DUF2798) - - - 0.000000000000000000000000000000000000003278 146.0
DPH3_k127_11220066_34 - - - - 0.00000000000000000000000000325 115.0
DPH3_k127_11220066_35 PFAM Transposase, IS4-like - - - 0.0000000000000000000271 91.0
DPH3_k127_11220066_36 CNP1-like family - - - 0.000000000004365 66.0
DPH3_k127_11220066_38 ISXO2-like transposase domain - - - 0.0001028 45.0
DPH3_k127_11220066_4 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0 1055.0
DPH3_k127_11220066_5 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0 998.0
DPH3_k127_11220066_6 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 6.259e-300 921.0
DPH3_k127_11220066_7 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 4.805e-290 892.0
DPH3_k127_11220066_8 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 2.153e-262 808.0
DPH3_k127_11220066_9 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 9.464e-261 805.0
DPH3_k127_11227178_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1332.0
DPH3_k127_11227178_1 Diguanylate cyclase - - - 2.063e-308 951.0
DPH3_k127_11227178_2 PFAM aminotransferase, class I K00812 - 2.6.1.1 6.019e-244 757.0
DPH3_k127_11227178_3 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007574 552.0
DPH3_k127_11227178_4 tRNA rRNA methyltransferase, SpoU K03437 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 521.0
DPH3_k127_11227178_5 Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 351.0
DPH3_k127_11227178_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000114 222.0
DPH3_k127_11227178_7 Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02403 - - 0.000000000000000000000000000000000000000000000000007818 181.0
DPH3_k127_11278733_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.0 1115.0
DPH3_k127_11278733_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 5.711e-310 952.0
DPH3_k127_11278733_10 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004767 297.0
DPH3_k127_11278733_11 endonuclease III K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000001148 231.0
DPH3_k127_11278733_12 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.0000000000000000000000000000000000000000000000000003243 185.0
DPH3_k127_11278733_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 4.393e-302 929.0
DPH3_k127_11278733_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 6.501e-293 900.0
DPH3_k127_11278733_4 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 3.428e-269 833.0
DPH3_k127_11278733_5 Peptidoglycan polymerase that is essential for cell division K03588 - - 4.53e-231 717.0
DPH3_k127_11278733_6 Cell wall formation K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 580.0
DPH3_k127_11278733_7 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 571.0
DPH3_k127_11278733_8 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007088 505.0
DPH3_k127_11278733_9 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 453.0
DPH3_k127_11328698_0 PFAM TonB-dependent receptor, beta-barrel - - - 0.0 1765.0
DPH3_k127_11328698_1 TPR repeat - - - 8.083e-210 654.0
DPH3_k127_11371528_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 3.962e-263 811.0
DPH3_k127_11371528_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 1.166e-230 716.0
DPH3_k127_11371528_2 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007254 386.0
DPH3_k127_11395973_0 alpha-ribazole phosphatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003174 319.0
DPH3_k127_11395973_1 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000001155 226.0
DPH3_k127_11395973_2 YoeB-like toxin of bacterial type II toxin-antitoxin system - - - 0.000000000000000000000000000000000000003644 147.0
DPH3_k127_11395973_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000000000000000000000001509 141.0
DPH3_k127_11395973_4 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00000000000000000000000000000000002972 136.0
DPH3_k127_11395973_6 PFAM Nucleotidyltransferase - - - 0.00000000001409 65.0
DPH3_k127_11541609_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 528.0
DPH3_k127_11541609_1 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 287.0
DPH3_k127_11541609_2 positive regulation of growth K07746 - - 0.00000000000000000000000001705 110.0
DPH3_k127_11541609_3 nucleotidyltransferase activity - - - 0.00000000002317 67.0
DPH3_k127_11541609_4 - - - - 0.000000000724 63.0
DPH3_k127_11541609_6 Transposase IS200 like - - - 0.0001754 45.0
DPH3_k127_11577020_0 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 8.546e-257 793.0
DPH3_k127_11577020_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 8.555e-208 647.0
DPH3_k127_11577020_2 nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 400.0
DPH3_k127_11577020_3 protein conserved in bacteria K09941 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 322.0
DPH3_k127_11577020_4 RF-1 domain K15034 - - 0.00000000000000000000000000000000000000000000000000000000000000000004426 233.0
DPH3_k127_11620611_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 1.517e-311 958.0
DPH3_k127_11620611_1 ROK family K00845,K00847,K00884 - 2.7.1.2,2.7.1.4,2.7.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 552.0
DPH3_k127_11620611_3 PFAM Transposase, IS4-like K07481 - - 0.00000001262 56.0
DPH3_k127_11620611_4 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0007427 42.0
DPH3_k127_11657414_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0 1492.0
DPH3_k127_11657414_1 Bacterial regulatory helix-turn-helix protein, lysR family K03576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006284 564.0
DPH3_k127_11657414_2 PFAM TENA THI-4 protein Coenzyme PQQ biosynthesis protein C K06137 - 1.3.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008486 489.0
DPH3_k127_11657414_3 Transposase IS200 like K07491 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004074 289.0
DPH3_k127_11657414_4 cytochrome C peroxidase - - - 0.00000000000000000000000000006043 119.0
DPH3_k127_11657414_5 NAD+ binding - - - 0.000000131 54.0
DPH3_k127_11672189_0 HELICc2 K03722 - 3.6.4.12 0.0 1223.0
DPH3_k127_11672189_1 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor K02668 - 2.7.13.3 0.0 1000.0
DPH3_k127_11672189_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000000000000000000000002813 199.0
DPH3_k127_11672189_11 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000003371 169.0
DPH3_k127_11672189_12 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000000000000000003987 169.0
DPH3_k127_11672189_13 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000000000000000000000000000000000000001072 164.0
DPH3_k127_11672189_14 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000001338 164.0
DPH3_k127_11672189_15 - K06950 - - 0.000000000000000000000000000000000000000004738 155.0
DPH3_k127_11672189_16 Transposase DDE domain - - - 0.0000000000000000000000000000000000002624 140.0
DPH3_k127_11672189_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 6.905e-224 695.0
DPH3_k127_11672189_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 2.889e-218 678.0
DPH3_k127_11672189_4 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 7.829e-209 650.0
DPH3_k127_11672189_5 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 2.706e-195 610.0
DPH3_k127_11672189_6 response regulator receiver K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005928 456.0
DPH3_k127_11672189_7 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 391.0
DPH3_k127_11672189_8 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004699 311.0
DPH3_k127_11672189_9 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 290.0
DPH3_k127_11706898_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0 2271.0
DPH3_k127_11706898_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 3.576e-231 719.0
DPH3_k127_11706898_2 dehydrogenase, E1 component K00164 - 1.2.4.2 1.239e-202 631.0
DPH3_k127_11706898_3 Peptidase family U32 C-terminal domain K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000046 229.0
DPH3_k127_11717728_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1750.0
DPH3_k127_11717728_1 DNA polymerase III (Delta subunit) K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 605.0
DPH3_k127_11717728_2 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004816 587.0
DPH3_k127_11717728_3 PFAM Peptidase M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 458.0
DPH3_k127_11717728_4 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001506 275.0
DPH3_k127_11717728_5 ArsC family K00537 - 1.20.4.1 0.00000000000000000000000000000000000000000000000000000000000000003222 224.0
DPH3_k127_11717728_6 AraC-like ligand binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001365 221.0
DPH3_k127_11717728_7 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000002896 155.0
DPH3_k127_11717728_8 Dodecin K09165 - - 0.000000000000000000000000000000000037 134.0
DPH3_k127_11717728_9 Protein of unknown function (DUF3622) - - - 0.00000000000000000000000000001736 119.0
DPH3_k127_11868322_0 Protein of unknown function (DUF2868) - - - 6.475e-287 883.0
DPH3_k127_11868322_1 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009939 474.0
DPH3_k127_11868322_2 GTP-binding protein, HSR1-related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 408.0
DPH3_k127_1191823_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1118.0
DPH3_k127_1191823_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 4.553e-232 720.0
DPH3_k127_11938548_0 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 541.0
DPH3_k127_11938548_1 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 296.0
DPH3_k127_11938548_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000000000000000000000000000000001229 195.0
DPH3_k127_11953521_0 The M ring may be actively involved in energy transduction K02409 - - 0.0 1004.0
DPH3_k127_11953521_1 ATP synthase alpha/beta family, nucleotide-binding domain K02412 - 3.6.3.14 6.536e-294 903.0
DPH3_k127_11953521_10 Flagellar motor switch K02417,K03225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003642 291.0
DPH3_k127_11953521_11 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003969 272.0
DPH3_k127_11953521_12 Flagellar FliJ protein K02413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000859 256.0
DPH3_k127_11953521_13 Flagellar hook-basal body complex protein FliE K02408 - - 0.000000000000000000000000000000000000000000000000000006191 191.0
DPH3_k127_11953521_14 Role in flagellar biosynthesis K02420 - - 0.0000000000000000000000000000000000000000000007985 166.0
DPH3_k127_11953521_15 flagellar biosynthesis protein K02418 - - 0.00000000000000000000000000000000005417 138.0
DPH3_k127_11953521_16 SMART ATPase, AAA type, core K06158 - - 0.0000000000000002403 78.0
DPH3_k127_11953521_2 response regulator K10943 - - 1.748e-251 779.0
DPH3_k127_11953521_3 Signal transduction histidine kinase K10942 - 2.7.13.3 1.587e-233 725.0
DPH3_k127_11953521_4 flagellar motor switch protein FliM K02416 - - 9.35e-199 620.0
DPH3_k127_11953521_5 Flagellar hook-length control K02414 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 530.0
DPH3_k127_11953521_6 Plays a role in the flagellum-specific transport system K02419 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008077 482.0
DPH3_k127_11953521_7 Role in flagellar biosynthesis K02421 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 468.0
DPH3_k127_11953521_8 Flagellar motor switch K02410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 452.0
DPH3_k127_11953521_9 flagellar assembly protein FliH K02411 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006505 405.0
DPH3_k127_1200339_0 COG0457 FOG TPR repeat - - - 0.0 1110.0
DPH3_k127_1200339_1 Bacterial transcriptional repressor C-terminal K16137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 395.0
DPH3_k127_1200339_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002392 280.0
DPH3_k127_1200339_3 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000000000000000000000008635 184.0
DPH3_k127_1200339_4 - - - - 0.000000000000000000002426 94.0
DPH3_k127_12004902_0 PFAM Major facilitator superfamily MFS-1 - - - 1.543e-253 785.0
DPH3_k127_12004902_1 SMART ATPase, AAA type, core - - - 6.657e-235 730.0
DPH3_k127_12004902_2 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 573.0
DPH3_k127_12004902_3 Glutathione S-transferase, N-terminal domain K00799,K11209 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 374.0
DPH3_k127_12004902_4 - - - - 0.0000000000000000000000000002505 120.0
DPH3_k127_12068278_0 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005074 473.0
DPH3_k127_12068278_1 Plasmid pRiA4b ORF-3-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 383.0
DPH3_k127_12068278_2 PFAM DNA methylase N-4 N-6 K07316 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001763 269.0
DPH3_k127_12068278_3 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000005386 157.0
DPH3_k127_12071346_0 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.0 1334.0
DPH3_k127_12071346_1 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 609.0
DPH3_k127_12071346_2 PFAM RIO-like kinase K07178 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 540.0
DPH3_k127_12071346_3 antibiotic catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 456.0
DPH3_k127_12071346_4 PEP-CTERM motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 358.0
DPH3_k127_12071346_5 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000001481 153.0
DPH3_k127_12071346_6 Putative quorum-sensing-regulated virulence factor K09954 - - 0.00000000000000000000000000000000000002303 143.0
DPH3_k127_12096985_0 PFAM Di-haem cytochrome c peroxidase - - - 0.0 1330.0
DPH3_k127_12096985_1 Alginate export - - - 0.0 1028.0
DPH3_k127_12096985_10 PEP-CTERM motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 295.0
DPH3_k127_12096985_11 Restriction endonuclease K07448 - - 0.0000000000000000000000000000000000000000000000000000000000000002145 225.0
DPH3_k127_12096985_2 PFAM amidohydrolase - - - 2.996e-232 727.0
DPH3_k127_12096985_3 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 3.041e-227 706.0
DPH3_k127_12096985_4 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007184 546.0
DPH3_k127_12096985_5 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 500.0
DPH3_k127_12096985_6 PFAM Metal-dependent hydrolase HDOD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 484.0
DPH3_k127_12096985_7 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 429.0
DPH3_k127_12096985_8 Ankyrin repeat K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 341.0
DPH3_k127_12096985_9 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004906 306.0
DPH3_k127_12106279_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 6.314e-217 676.0
DPH3_k127_12106279_1 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007489 441.0
DPH3_k127_12106279_10 - - - - 0.000000000000002472 75.0
DPH3_k127_12106279_2 PFAM Peptidase M22, glycoprotease K14742 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008938 436.0
DPH3_k127_12106279_3 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007426 347.0
DPH3_k127_12106279_4 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008491 274.0
DPH3_k127_12106279_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789,K14742 - 2.3.1.128 0.0000000000000000000000000000000000000000000000000000000000000000000000003021 246.0
DPH3_k127_12106279_7 - - - - 0.000000000000000000000000003612 111.0
DPH3_k127_12106279_8 - - - - 0.00000000000000000000005733 97.0
DPH3_k127_12106279_9 - - - - 0.0000000000000004081 78.0
DPH3_k127_12125237_0 pdz dhr glgf - - - 0.0 1901.0
DPH3_k127_12125237_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 5.64e-299 920.0
DPH3_k127_12125237_2 WD40-like Beta Propeller Repeat - - - 3.469e-220 685.0
DPH3_k127_12125237_3 Tfp pilus assembly protein FimV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 606.0
DPH3_k127_12125237_4 Domain of unknown function (DUF4124) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001646 256.0
DPH3_k127_12125237_5 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000000000000000004905 148.0
DPH3_k127_12133299_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 3.026e-270 833.0
DPH3_k127_12133299_1 Zinc-binding dehydrogenase K12957,K13979 - - 1.129e-216 673.0
DPH3_k127_12133299_2 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009828 481.0
DPH3_k127_12133299_3 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000000000000000000000004964 229.0
DPH3_k127_12133299_4 Cupin domain K11312 - - 0.0000000000000000000000000000000000000000000000000000000000005666 211.0
DPH3_k127_12133299_5 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000000000000002924 149.0
DPH3_k127_12227678_0 SMART Diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 473.0
DPH3_k127_12227678_1 transposition K07497 - - 0.00000000000000000000000000000000000000000000000000009608 191.0
DPH3_k127_12227678_2 transposition K07497 - - 0.00000000000000000000000000000157 127.0
DPH3_k127_12227678_3 Belongs to the 'phage' integrase family - - - 0.0000000000001318 71.0
DPH3_k127_1224597_0 Outer membrane efflux protein - - - 1.471e-237 743.0
DPH3_k127_1224597_1 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 565.0
DPH3_k127_1224597_2 MafB19-like deaminase K01485 - 3.5.4.1 0.0000000000000000000000000000000000000000000000000000000000000000001298 232.0
DPH3_k127_1224597_3 pilus organization - - - 0.000000000000000000000000000000000000000000000000009947 189.0
DPH3_k127_1224597_4 GYD domain - - - 0.00000000000000000000000000000004376 127.0
DPH3_k127_1224597_5 ABC transporter K02003 - - 0.0000000003386 60.0
DPH3_k127_12260058_0 KAP family P-loop domain - - - 0.0 1092.0
DPH3_k127_12260058_1 Methyl-accepting chemotaxis sensory transducer with Pas Pac sensor K03406,K03776 - - 8.655e-281 872.0
DPH3_k127_12260058_2 PFAM Transposase, IS66 K07484 - - 1.995e-263 818.0
DPH3_k127_12260058_3 IS66 Orf2-like K07484 - - 0.0000000000000000000000000000000000001301 141.0
DPH3_k127_12260058_4 PFAM Transposase, IS4-like K07481 - - 0.000000000000000000000000000000000005076 139.0
DPH3_k127_12260058_5 PFAM Transposase, IS4-like K07481 - - 0.0000000000000006218 77.0
DPH3_k127_12281309_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 596.0
DPH3_k127_12281309_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 581.0
DPH3_k127_12281309_2 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 359.0
DPH3_k127_12281309_3 PFAM Blue (type 1) copper domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 299.0
DPH3_k127_12281309_4 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000000000000000000000000000000000001163 228.0
DPH3_k127_12281309_5 Protein of unknown function, DUF - - - 0.0000000000000000000000000000000000000000000000000007598 184.0
DPH3_k127_1229905_0 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 561.0
DPH3_k127_1229905_1 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 473.0
DPH3_k127_1229905_2 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 384.0
DPH3_k127_1229905_3 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 338.0
DPH3_k127_1229905_4 HupE UreJ protein K03192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 330.0
DPH3_k127_1229905_5 TPM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 303.0
DPH3_k127_1229905_6 hydrogenase maturation protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005967 262.0
DPH3_k127_1229905_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007287 247.0
DPH3_k127_1229905_8 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000000000000000000000000000000000000000000000002225 209.0
DPH3_k127_1229905_9 TIGRFAM Undecaprenyl-phosphate glucose phosphotransferase, WcaJ K03606 - - 0.000000000000000000007449 91.0
DPH3_k127_12300944_0 PFAM Magnesium chelatase, ChlI subunit K07391 - - 2.004e-297 917.0
DPH3_k127_12300944_1 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009725 290.0
DPH3_k127_12300944_2 Membrane fusogenic activity K09806 - - 0.00000000000000000000000000000000000000000000374 166.0
DPH3_k127_12321422_0 Ammonium transporter K03320,K06580 - - 4.349e-276 852.0
DPH3_k127_12321422_1 CNP1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000075 309.0
DPH3_k127_12321422_2 Belongs to the Fur family K09823 - - 0.000000000000004425 74.0
DPH3_k127_12340493_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1580.0
DPH3_k127_12340493_1 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 1.407e-267 824.0
DPH3_k127_12340493_2 Putative diguanylate phosphodiesterase - - - 0.000004785 48.0
DPH3_k127_12419503_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0 1448.0
DPH3_k127_12419503_1 Tex-like protein N-terminal domain K06959 - - 0.0 1399.0
DPH3_k127_12419503_10 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 291.0
DPH3_k127_12419503_11 Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003385 259.0
DPH3_k127_12419503_12 RDD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002377 256.0
DPH3_k127_12419503_13 Putative prokaryotic signal transducing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000261 224.0
DPH3_k127_12419503_14 2Fe-2S -binding K02192 - - 0.000000000000000000000000000000000004748 138.0
DPH3_k127_12419503_15 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000003228 116.0
DPH3_k127_12419503_16 - - - - 0.000000000000005781 74.0
DPH3_k127_12419503_17 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000001866 68.0
DPH3_k127_12419503_18 - - - - 0.0000000001049 64.0
DPH3_k127_12419503_2 AAA C-terminal domain K07478 - - 6.277e-270 837.0
DPH3_k127_12419503_3 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 7.565e-269 830.0
DPH3_k127_12419503_4 May be involved in recombination K03554 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 577.0
DPH3_k127_12419503_5 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 496.0
DPH3_k127_12419503_6 MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 460.0
DPH3_k127_12419503_7 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 416.0
DPH3_k127_12419503_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009255 404.0
DPH3_k127_12419503_9 Cytidylyltransferase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005084 302.0
DPH3_k127_12481675_0 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 1.397e-293 902.0
DPH3_k127_12481675_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 2.961e-222 692.0
DPH3_k127_12481675_2 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 514.0
DPH3_k127_12481675_3 PFAM Polyketide cyclase dehydrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 315.0
DPH3_k127_12481675_4 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 GO:0000166,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003999,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0012505,GO:0016192,GO:0016208,GO:0016740,GO:0016757,GO:0016763,GO:0017076,GO:0018130,GO:0019438,GO:0030141,GO:0030554,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0034641,GO:0034654,GO:0034774,GO:0036094,GO:0036230,GO:0042119,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046483,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 300.0
DPH3_k127_12481675_5 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009705 293.0
DPH3_k127_12506344_0 M3B, thimet oligopeptidase F K01414 - 3.4.24.70 0.0 1343.0
DPH3_k127_12506344_1 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 3.337e-271 836.0
DPH3_k127_12506344_10 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 408.0
DPH3_k127_12506344_11 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 361.0
DPH3_k127_12506344_12 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 356.0
DPH3_k127_12506344_13 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 327.0
DPH3_k127_12506344_14 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 320.0
DPH3_k127_12506344_15 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002967 245.0
DPH3_k127_12506344_16 Belongs to the ArsC family K00537 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000000000000001536 212.0
DPH3_k127_12506344_17 YCII-related domain K09780 - - 0.0000000000000000000000000000000000000000000000002363 177.0
DPH3_k127_12506344_18 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000005349 173.0
DPH3_k127_12506344_19 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000000001447 170.0
DPH3_k127_12506344_2 Cysteine-rich domain K11473 - - 8.193e-264 815.0
DPH3_k127_12506344_20 PFAM transposase, IS4 family protein K07481 - - 0.000000000000000000000000000000000000002574 149.0
DPH3_k127_12506344_21 Rubredoxin - - - 0.0000000000000008113 77.0
DPH3_k127_12506344_3 PFAM Major facilitator superfamily - - - 3.156e-253 784.0
DPH3_k127_12506344_4 Pyridine nucleotide-disulphide oxidoreductase K05297,K12265 - 1.18.1.1 1.717e-222 692.0
DPH3_k127_12506344_5 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 4.185e-222 691.0
DPH3_k127_12506344_6 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 3.321e-200 624.0
DPH3_k127_12506344_7 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 516.0
DPH3_k127_12506344_8 Peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 485.0
DPH3_k127_12506344_9 MlaA lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 481.0
DPH3_k127_12507202_0 Transglycosylase SLT domain K08305 - - 2.113e-254 787.0
DPH3_k127_12507202_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 2.541e-208 649.0
DPH3_k127_12507202_2 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 525.0
DPH3_k127_12507202_3 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 509.0
DPH3_k127_12507202_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001198 254.0
DPH3_k127_12507202_5 - - - - 0.000000000000000000000000000000000000000000000000000000000009748 213.0
DPH3_k127_12507202_6 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000002963 196.0
DPH3_k127_12507202_7 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000001601 195.0
DPH3_k127_12545300_0 PFAM ketose-bisphosphate aldolase, class-II K01624 - 4.1.2.13 1.985e-247 766.0
DPH3_k127_12545300_1 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 526.0
DPH3_k127_12545300_2 CHAP domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 467.0
DPH3_k127_12545300_3 Response regulator receiver K02487,K03407,K06596 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 328.0
DPH3_k127_12545300_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003432 243.0
DPH3_k127_12635222_0 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 529.0
DPH3_k127_12635222_1 Domain of unknown function (DUF4340) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007323 495.0
DPH3_k127_12635222_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005609 485.0
DPH3_k127_12635222_3 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005485 371.0
DPH3_k127_12635222_4 YGGT family K02221 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 326.0
DPH3_k127_12635222_5 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001081 270.0
DPH3_k127_12635222_6 Belongs to the UPF0235 family K09131 - - 0.000000000000000000000000000000000000000000000000000004379 190.0
DPH3_k127_12752962_0 'signal transduction protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 359.0
DPH3_k127_12752962_1 HDOD domain - - - 0.00000000000000000000001061 103.0
DPH3_k127_12752962_2 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000002477 63.0
DPH3_k127_12752962_3 Belongs to the 'phage' integrase family - - - 0.000001602 51.0
DPH3_k127_12888334_0 PFAM Exonuclease, RNase T DNA polymerase III K02342 - 2.7.7.7 4.108e-270 832.0
DPH3_k127_12888334_1 PFAM DNA-repair protein, UmuC-like K03502 - - 5.398e-221 691.0
DPH3_k127_12888334_2 PFAM Peptidase S24 S26A S26B, conserved region K03503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008139 370.0
DPH3_k127_12888334_3 RNase H - - - 0.00000000000000000000001037 100.0
DPH3_k127_1396851_0 TIGRFAM TonB-dependent vitamin B12 receptor K16092 - - 0.0 1178.0
DPH3_k127_1396851_1 phospholipase Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 420.0
DPH3_k127_1396851_10 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.0000000000000000000004288 96.0
DPH3_k127_1396851_11 TIGRFAM Undecaprenyl-phosphate glucose phosphotransferase, WcaJ K03606 - - 0.000000000000000000007449 91.0
DPH3_k127_1396851_2 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 393.0
DPH3_k127_1396851_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 365.0
DPH3_k127_1396851_4 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007529 267.0
DPH3_k127_1396851_5 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000001541 213.0
DPH3_k127_1396851_6 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.00000000000000000000000000000000000000000000000000000000009315 205.0
DPH3_k127_1396851_7 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.0000000000000000000000000000003241 125.0
DPH3_k127_1396851_8 Transglutaminase-like superfamily - - - 0.0000000000000000000000003394 107.0
DPH3_k127_1396851_9 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.00000000000000000000001711 100.0
DPH3_k127_1432155_0 Domain of unknown function (DUF4139) - - - 3.759e-290 893.0
DPH3_k127_1432155_1 PFAM Aminotransferase, class V K04487 - 2.8.1.7 1.449e-229 713.0
DPH3_k127_1432155_10 Histidine triad (HIT) protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 280.0
DPH3_k127_1432155_2 response regulator containing a CheY-like receiver - - - 3.825e-221 688.0
DPH3_k127_1432155_3 fatty acid desaturase - - - 8.991e-219 680.0
DPH3_k127_1432155_4 VanZ like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 606.0
DPH3_k127_1432155_5 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 474.0
DPH3_k127_1432155_6 PFAM Nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 473.0
DPH3_k127_1432155_7 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 310.0
DPH3_k127_1432155_8 endonuclease III K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 292.0
DPH3_k127_1432155_9 Protein of unknown function (DUF454) K09790 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 287.0
DPH3_k127_1546145_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004609 511.0
DPH3_k127_1546145_1 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 500.0
DPH3_k127_1546145_2 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 482.0
DPH3_k127_1546145_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007087 440.0
DPH3_k127_1546145_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 313.0
DPH3_k127_1546145_5 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000004915 174.0
DPH3_k127_1562397_0 Histidine kinase K03407 GO:0003674,GO:0005488,GO:0005515,GO:0019904 2.7.13.3 0.0 1270.0
DPH3_k127_1562397_1 Sulfatase K01130 - 3.1.6.1 4.033e-280 867.0
DPH3_k127_1562397_10 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002287 264.0
DPH3_k127_1562397_11 PFAM Signal transduction response regulator, receiver K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000000009696 233.0
DPH3_k127_1562397_12 Domain of unknown function (DUF4389) - - - 0.0000000000000000000000000000000000000000000000000000000179 198.0
DPH3_k127_1562397_13 Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) K07337 - - 0.0000000000000000000002372 107.0
DPH3_k127_1562397_14 PFAM Carbohydrate-selective porin OprB K07267 - - 0.00000000000003474 73.0
DPH3_k127_1562397_15 - - - - 0.00000000000009991 72.0
DPH3_k127_1562397_17 - - - - 0.0000002018 53.0
DPH3_k127_1562397_2 Cytochrome c554 and c-prime - - - 4.863e-264 834.0
DPH3_k127_1562397_3 PFAM Chemotaxis methyl-accepting receptor, signalling K03406,K03776,K05874 - - 1.73e-250 784.0
DPH3_k127_1562397_4 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 1.033e-218 680.0
DPH3_k127_1562397_5 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 587.0
DPH3_k127_1562397_6 Protein of unknown function - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 577.0
DPH3_k127_1562397_7 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 393.0
DPH3_k127_1562397_8 NlpC/P60 family K13695,K19303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005047 315.0
DPH3_k127_1562397_9 PFAM CheW-like protein K03408 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 306.0
DPH3_k127_1726060_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0 1192.0
DPH3_k127_1726060_1 Belongs to the 'phage' integrase family - - - 1.902e-236 735.0
DPH3_k127_1726060_10 - - - - 0.0000000000000000000000000004945 124.0
DPH3_k127_1726060_11 - - - - 0.0000000000000001658 79.0
DPH3_k127_1726060_13 ISXO2-like transposase domain - - - 0.000000001966 58.0
DPH3_k127_1726060_14 - - - - 0.00000002288 64.0
DPH3_k127_1726060_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 1.252e-232 720.0
DPH3_k127_1726060_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 3.188e-207 646.0
DPH3_k127_1726060_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 555.0
DPH3_k127_1726060_5 Plasmid recombination enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 422.0
DPH3_k127_1726060_6 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 364.0
DPH3_k127_1726060_7 Preprotein translocase subunit K03210 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003542 252.0
DPH3_k127_1726060_8 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000704 164.0
DPH3_k127_1726060_9 Transcriptional regulator - - - 0.00000000000000000000000000000000000000001027 153.0
DPH3_k127_1785339_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 0.0 1162.0
DPH3_k127_1785339_1 Bacterial regulatory helix-turn-helix protein, lysR family K13634 - - 2.869e-202 631.0
DPH3_k127_1785339_10 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 285.0
DPH3_k127_1785339_11 Bacterial protein of unknown function (DUF934) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003087 275.0
DPH3_k127_1785339_12 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007538 261.0
DPH3_k127_1785339_13 Protein of unknown function (DUF3293) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009511 249.0
DPH3_k127_1785339_14 - - - - 0.000000000000000000000000000000000000000000004228 163.0
DPH3_k127_1785339_16 - - - - 0.0000000000000000000000002681 105.0
DPH3_k127_1785339_17 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 0.00000000000000000003114 89.0
DPH3_k127_1785339_19 nucleotide-binding Protein - - - 0.000000000001937 69.0
DPH3_k127_1785339_2 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 2.256e-196 613.0
DPH3_k127_1785339_20 TIR domain - - - 0.000006107 49.0
DPH3_k127_1785339_3 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 1.455e-195 612.0
DPH3_k127_1785339_4 adenylyltransferase, small subunit K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 595.0
DPH3_k127_1785339_5 Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 535.0
DPH3_k127_1785339_6 Belongs to the MtfA family K09933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 518.0
DPH3_k127_1785339_7 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007313 490.0
DPH3_k127_1785339_8 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005167 347.0
DPH3_k127_1785339_9 Predicted small integral membrane protein (DUF2165) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 310.0
DPH3_k127_1851881_0 PFAM sulfatase - - - 1.281e-296 916.0
DPH3_k127_1851881_1 Belongs to the UPF0061 (SELO) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 589.0
DPH3_k127_1851881_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008041 379.0
DPH3_k127_1851881_3 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.00000000000000000000000000000000000000000000000000000000005849 207.0
DPH3_k127_1851881_4 sister chromatid segregation - - - 0.000000000000000000000000000000000000000000000601 175.0
DPH3_k127_1851881_5 - - - - 0.00000002683 62.0
DPH3_k127_1854251_0 Ketoacyl-synthetase C-terminal extension - - - 0.0 5124.0
DPH3_k127_1854251_1 Ketoacyl-synthetase C-terminal extension K15676 - - 0.0 3033.0
DPH3_k127_1854251_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0 1108.0
DPH3_k127_1854251_3 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 453.0
DPH3_k127_1854251_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000000000000000000000005107 187.0
DPH3_k127_188921_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1658.0
DPH3_k127_188921_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1380.0
DPH3_k127_188921_10 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 3.146e-194 606.0
DPH3_k127_188921_11 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 530.0
DPH3_k127_188921_12 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005977 505.0
DPH3_k127_188921_13 FecR protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 329.0
DPH3_k127_188921_14 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 301.0
DPH3_k127_188921_15 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002998 287.0
DPH3_k127_188921_16 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001303 242.0
DPH3_k127_188921_17 PFAM Transposase, IS4-like - - - 0.00000000000000000000000000007405 115.0
DPH3_k127_188921_18 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000006736 80.0
DPH3_k127_188921_2 heme binding - - - 0.0 1026.0
DPH3_k127_188921_3 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 4.594e-265 816.0
DPH3_k127_188921_4 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 3.895e-244 756.0
DPH3_k127_188921_5 PFAM aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 3.002e-240 744.0
DPH3_k127_188921_6 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 3.48e-232 720.0
DPH3_k127_188921_7 PFAM Peptidase S11, D-alanyl-D-alanine carboxypeptidase A K01286,K07258 - 3.4.16.4 6.256e-223 695.0
DPH3_k127_188921_8 NeuB family K03856 - 2.5.1.54 5.289e-217 674.0
DPH3_k127_188921_9 Prephenate dehydratase K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 7.82e-211 657.0
DPH3_k127_1965866_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1801.0
DPH3_k127_1965866_1 cytochrome C peroxidase - - - 0.0 1313.0
DPH3_k127_1965866_10 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006893 408.0
DPH3_k127_1965866_11 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 401.0
DPH3_k127_1965866_12 Thioredoxin-like domain K03671,K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 286.0
DPH3_k127_1965866_13 Glycine-zipper domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002141 240.0
DPH3_k127_1965866_14 Protein of unknown function (DUF3579) - - - 0.00000000000000000000000000000000000000000000000000000000000009076 214.0
DPH3_k127_1965866_15 - - - - 0.00000000000000000000000000000000000000000000000000000006836 196.0
DPH3_k127_1965866_16 MerR HTH family regulatory protein K18997 - - 0.000000000000000000000000000000000000000000000000000003116 191.0
DPH3_k127_1965866_17 - - - - 0.0000000000000000000000000000000000000000000000000001474 188.0
DPH3_k127_1965866_18 - - - - 0.0000000000000000000000000000000000003604 141.0
DPH3_k127_1965866_19 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000855 138.0
DPH3_k127_1965866_2 PFAM Multicopper oxidase, type K04753,K08100,K14588 - 1.3.3.5 0.0 1000.0
DPH3_k127_1965866_21 DDE domain - - - 0.000000000000000006146 85.0
DPH3_k127_1965866_3 Putative Na+/H+ antiporter - - - 2.763e-261 806.0
DPH3_k127_1965866_4 PFAM Peptidase S1 S6, chymotrypsin Hap K08070 - 1.3.1.74 5.587e-240 743.0
DPH3_k127_1965866_5 outer membrane efflux protein K15725 - - 3.481e-233 725.0
DPH3_k127_1965866_6 Bacterial protein of unknown function (DUF839) K07093 - - 3.757e-227 707.0
DPH3_k127_1965866_7 Putative aminopeptidase - - - 5.803e-206 644.0
DPH3_k127_1965866_8 PFAM heat shock protein DnaJ K05516 - - 3.86e-196 612.0
DPH3_k127_1965866_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 612.0
DPH3_k127_1982147_0 PFAM Cytochrome c assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 546.0
DPH3_k127_1982147_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 524.0
DPH3_k127_1982147_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 458.0
DPH3_k127_1982147_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 381.0
DPH3_k127_1982147_4 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000000000000003633 176.0
DPH3_k127_1982147_5 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000358 63.0
DPH3_k127_2396020_0 Specifically methylates the adenine in position 1618 of 23S rRNA K06970 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008988,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052907,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.181 0.00000000000000000000000000000000000000000000000000000000000006002 217.0
DPH3_k127_2396020_1 Heavy-metal-associated domain K01533 - 3.6.3.4 0.000000000000000000000000000000000000000000000000000000000008089 215.0
DPH3_k127_2396020_2 Cytochrome oxidase maturation protein cbb3-type - - - 0.000000005706 59.0
DPH3_k127_2397355_0 CHAD - - - 2.101e-259 806.0
DPH3_k127_2397355_1 E3 Ubiquitin ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005296 574.0
DPH3_k127_2397355_2 TIGRFAM Polyphosphate nucleotide phosphotransferase, PPK2 K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005404 471.0
DPH3_k127_2397355_3 SMART HTH transcriptional regulator, Crp K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 406.0
DPH3_k127_2397355_4 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 366.0
DPH3_k127_2397355_5 Domain of unknown function (DUF4156) - - - 0.000000000000000000000000000000000000000000000000000000000000007101 218.0
DPH3_k127_2397355_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000001061 213.0
DPH3_k127_2397355_7 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000002666 178.0
DPH3_k127_2417622_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1877.0
DPH3_k127_2417622_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 4.058e-263 810.0
DPH3_k127_2417622_2 Putative transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 406.0
DPH3_k127_2417622_3 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 303.0
DPH3_k127_2417622_4 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002166 265.0
DPH3_k127_2417622_5 HTH-type transcriptional regulator (heavy metal copper efflux protein) - - - 0.000000000002947 69.0
DPH3_k127_2417622_6 Sulfotransferase domain - - - 0.00009106 46.0
DPH3_k127_2463109_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01539 - 3.6.3.9 0.0 1280.0
DPH3_k127_2463109_1 Belongs to the peptidase S16 family - - - 0.0 1165.0
DPH3_k127_2463109_2 Heat shock 70 kDa protein K04043 - - 0.0 1036.0
DPH3_k127_2463109_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 480.0
DPH3_k127_2463109_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 383.0
DPH3_k127_2463109_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000000000000000000000000149 224.0
DPH3_k127_2463109_6 - - - - 0.00000000217 58.0
DPH3_k127_2487689_0 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 456.0
DPH3_k127_2487689_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 437.0
DPH3_k127_2487689_2 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001647 278.0
DPH3_k127_2487689_4 Protein of unknown function (DUF2835) - - - 0.0000000000000000000000000000000000001786 141.0
DPH3_k127_2487689_5 Peptidase M4 - - - 0.00000000000000000000000000001035 118.0
DPH3_k127_2487689_6 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06020 - 3.6.3.25 0.00000000000000000000006518 98.0
DPH3_k127_2507495_0 AFG1-like ATPase K06916 - - 2.7e-243 753.0
DPH3_k127_2507495_1 PFAM Major facilitator superfamily K08218 - - 1.728e-229 712.0
DPH3_k127_2507495_2 - - - - 0.0000000000000000001551 91.0
DPH3_k127_268098_0 TonB-dependent Receptor Plug Domain K02014 - - 0.0 1322.0
DPH3_k127_268098_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 4.067e-253 782.0
DPH3_k127_268098_2 Glucose / Sorbosone dehydrogenase K21430 - - 2.395e-238 739.0
DPH3_k127_268098_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 488.0
DPH3_k127_268098_4 RES - - - 0.0000000000000008464 78.0
DPH3_k127_268098_7 PFAM Integrase, catalytic core K07497 - - 0.0002427 46.0
DPH3_k127_2746176_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 442.0
DPH3_k127_2746176_1 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 409.0
DPH3_k127_2746176_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007333 366.0
DPH3_k127_2746176_3 Biopolymer transport protein ExbD TolR K03559 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001403 273.0
DPH3_k127_2753099_0 TIGRFAM A G-specific adenine glycosylase K03575 - - 1.837e-219 683.0
DPH3_k127_2753099_1 Flagellar hook-length control protein FliK - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 592.0
DPH3_k127_2753099_10 FlhB HrpN YscU SpaS Family K04061 - - 0.000000000000000000000000000000007608 130.0
DPH3_k127_2753099_2 Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 495.0
DPH3_k127_2753099_3 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008234 383.0
DPH3_k127_2753099_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003804 361.0
DPH3_k127_2753099_5 flagellar protein FliS K02422 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003559 256.0
DPH3_k127_2753099_6 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002671 239.0
DPH3_k127_2753099_7 Uncharacterised BCR, YnfA/UPF0060 family K09771 - - 0.00000000000000000000000000000000000000000000000000000000000000006585 222.0
DPH3_k127_2753099_8 Flagellar protein FliT K02423 - - 0.0000000000000000000000000000000000000000000000000000000000007457 210.0
DPH3_k127_2753099_9 PFAM Modulator of Rho-dependent transcription termination K19000 - - 0.0000000000000000000000000000000000000000000158 164.0
DPH3_k127_2788815_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1355.0
DPH3_k127_2788815_1 Putative diguanylate phosphodiesterase K21023 - 2.7.7.65 0.0 1035.0
DPH3_k127_2788815_2 Metal-dependent hydrolase HDOD - - - 1.368e-262 813.0
DPH3_k127_2788815_3 Belongs to the thiolase family K00632 - 2.3.1.16 2.881e-249 771.0
DPH3_k127_2788815_4 Belongs to the UPF0176 family K07146 - - 1.226e-195 610.0
DPH3_k127_2788815_5 cytochrome - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 293.0
DPH3_k127_2788815_6 manually curated - - - 0.00000000000003256 73.0
DPH3_k127_2788815_7 - - - - 0.0000000000001675 72.0
DPH3_k127_2788815_8 PFAM Transposase, IS4-like - - - 0.00000001472 55.0
DPH3_k127_2841672_0 EAL domain - - - 0.0 1155.0
DPH3_k127_2841672_1 PFAM Phospholipid glycerol acyltransferase - - - 0.0 1143.0
DPH3_k127_2841672_10 probably responsible for the translocation of the substrate across the membrane K02037 - - 2.548e-194 607.0
DPH3_k127_2841672_11 Patatin-like phospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 580.0
DPH3_k127_2841672_12 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 562.0
DPH3_k127_2841672_13 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 552.0
DPH3_k127_2841672_14 PFAM binding-protein-dependent transport systems inner membrane component K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005591 541.0
DPH3_k127_2841672_15 Sodium Bile acid symporter family K03453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008432 494.0
DPH3_k127_2841672_16 PFAM Alpha beta hydrolase fold-1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 449.0
DPH3_k127_2841672_17 Predicted integral membrane protein (DUF2269) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 358.0
DPH3_k127_2841672_18 low molecular weight K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008131 303.0
DPH3_k127_2841672_19 Esterase-like activity of phytase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006161 259.0
DPH3_k127_2841672_2 SMART ATPase, AAA type, core K01551 - 3.6.3.16 0.0 1079.0
DPH3_k127_2841672_20 Sulfotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002885 255.0
DPH3_k127_2841672_21 PFAM Arsenical resistance operon trans-acting repressor ArsD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001675 239.0
DPH3_k127_2841672_22 - - - - 0.000000000000000000000000000000000000000000000000000000001987 203.0
DPH3_k127_2841672_23 Regulatory protein ArsR K03892 - - 0.00000000000000000000000000000000000000000000000000000000287 201.0
DPH3_k127_2841672_24 Esterase-like activity of phytase - - - 0.000000000000000000000000000000000000000000000000000005375 191.0
DPH3_k127_2841672_25 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000005622 151.0
DPH3_k127_2841672_26 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.0000000000000000000000000000000000000234 143.0
DPH3_k127_2841672_27 - - - - 0.0000000000000000000000000000000001892 133.0
DPH3_k127_2841672_29 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000001798 117.0
DPH3_k127_2841672_3 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0 1058.0
DPH3_k127_2841672_4 domain, Protein - - - 7.358e-311 956.0
DPH3_k127_2841672_5 Involved in arsenical resistance. Thought to form the channel of an arsenite pump K03893 - - 2.453e-239 743.0
DPH3_k127_2841672_6 Glycosyl transferase family 1 - - - 1.652e-228 708.0
DPH3_k127_2841672_7 Peptidase M14, carboxypeptidase A - - - 3.684e-217 674.0
DPH3_k127_2841672_8 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 8.305e-216 671.0
DPH3_k127_2841672_9 PFAM Diacylglycerol kinase, catalytic - - - 1.788e-204 638.0
DPH3_k127_2931596_0 PFAM Aminoacyl-tRNA synthetase, class Ib K01867 - 6.1.1.2 2.045e-267 823.0
DPH3_k127_2931596_1 NnrS protein K07234 - - 2.771e-258 797.0
DPH3_k127_2931596_2 PFAM PHP C-terminal K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004933 579.0
DPH3_k127_2931596_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006928 462.0
DPH3_k127_2931596_4 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 428.0
DPH3_k127_2931596_5 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007064 426.0
DPH3_k127_2931596_6 TIGRFAM Sua5 YciO YrdC YwlC family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 305.0
DPH3_k127_2931596_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007347 256.0
DPH3_k127_2931596_8 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00006318 45.0
DPH3_k127_3046579_0 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 1.181e-273 842.0
DPH3_k127_3046579_1 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 7.32e-199 620.0
DPH3_k127_3046579_10 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 392.0
DPH3_k127_3046579_11 invasion associated locus B - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 336.0
DPH3_k127_3046579_12 Domain of unknown function (DUF2024) - - - 0.000000000000000000000000000000000000000000000002501 173.0
DPH3_k127_3046579_13 Belongs to the ArsC family K00537 - 1.20.4.1 0.00000000000000000001099 92.0
DPH3_k127_3046579_2 PFAM Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 607.0
DPH3_k127_3046579_3 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004325 569.0
DPH3_k127_3046579_4 O-Antigen ligase K02847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 541.0
DPH3_k127_3046579_5 Methyltransferase FkbM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 509.0
DPH3_k127_3046579_6 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 501.0
DPH3_k127_3046579_7 Cytidylyltransferase K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 484.0
DPH3_k127_3046579_8 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 437.0
DPH3_k127_3046579_9 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 398.0
DPH3_k127_304746_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1144.0
DPH3_k127_304746_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0 1047.0
DPH3_k127_304746_10 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 391.0
DPH3_k127_304746_11 Anti sigma-E protein RseA, N-terminal domain K03597 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 335.0
DPH3_k127_304746_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006824 302.0
DPH3_k127_304746_13 MEKHLA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001306 270.0
DPH3_k127_304746_14 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000001303 242.0
DPH3_k127_304746_15 Domain of unknown function (DUF4845) - - - 0.0000000000000000000000000000000000000000000000000000000002326 204.0
DPH3_k127_304746_16 Glutaredoxin-like domain (DUF836) K00384 - 1.8.1.9 0.000000000000000000000005385 104.0
DPH3_k127_304746_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 4.314e-290 893.0
DPH3_k127_304746_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 9.605e-289 889.0
DPH3_k127_304746_4 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 4.743e-223 692.0
DPH3_k127_304746_5 MucB/RseB C-terminal domain K03598 - - 7.674e-196 612.0
DPH3_k127_304746_6 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 555.0
DPH3_k127_304746_7 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 552.0
DPH3_k127_304746_8 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 447.0
DPH3_k127_304746_9 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 447.0
DPH3_k127_3079208_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0 1170.0
DPH3_k127_3079208_1 Belongs to the GSP D family K02453 - - 0.0 1170.0
DPH3_k127_3079208_10 Putative neutral zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 442.0
DPH3_k127_3079208_11 Type II secretory pathway, pseudopilin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 380.0
DPH3_k127_3079208_13 ABC transporter transmembrane region K12536 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 352.0
DPH3_k127_3079208_14 carbon utilization - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 350.0
DPH3_k127_3079208_15 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005777 327.0
DPH3_k127_3079208_16 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 316.0
DPH3_k127_3079208_17 Belongs to the UPF0307 family K09889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 308.0
DPH3_k127_3079208_18 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 302.0
DPH3_k127_3079208_19 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009425 284.0
DPH3_k127_3079208_2 type II secretion system protein E K02454 - - 0.0 1083.0
DPH3_k127_3079208_20 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005382 271.0
DPH3_k127_3079208_21 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000117 260.0
DPH3_k127_3079208_22 PFAM type II secretion system protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000328 239.0
DPH3_k127_3079208_23 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000000000000000000000000000000000000000002786 213.0
DPH3_k127_3079208_24 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000000000000000000000000000000001581 142.0
DPH3_k127_3079208_25 PFAM Peptidase S8 S53, subtilisin kexin sedolisin - - - 0.0000000000000000000000000000002196 123.0
DPH3_k127_3079208_26 DDE superfamily endonuclease - - - 0.000000000000000000000000005997 111.0
DPH3_k127_3079208_27 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000000006658 111.0
DPH3_k127_3079208_28 Histidine kinase - - - 0.0000000000000000002306 89.0
DPH3_k127_3079208_29 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000000105 83.0
DPH3_k127_3079208_3 DNA polymerase III K01141 - 3.1.11.1 3.568e-285 878.0
DPH3_k127_3079208_30 DDE superfamily endonuclease - - - 0.00000000002511 64.0
DPH3_k127_3079208_31 Winged helix-turn helix - - - 0.0002036 47.0
DPH3_k127_3079208_4 modulator of DNA gyrase K03592 - - 1.767e-283 873.0
DPH3_k127_3079208_5 TIGRFAM Type I secretion membrane fusion protein, HlyD K02022,K12537,K12542 - - 1.651e-270 835.0
DPH3_k127_3079208_6 TIGRFAM type I secretion outer membrane protein, TolC K12538 - - 5.082e-260 804.0
DPH3_k127_3079208_7 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 3.086e-259 802.0
DPH3_k127_3079208_8 Type II secretion system K02455 - - 3.104e-245 758.0
DPH3_k127_3079208_9 - - - - 3.109e-196 616.0
DPH3_k127_3198649_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0 1102.0
DPH3_k127_3198649_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.335e-320 983.0
DPH3_k127_3198649_10 system, fructose subfamily IIA component K02821 - 2.7.1.194 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001485 267.0
DPH3_k127_3198649_11 Cold shock protein domain K03704 - - 0.000000000000000000000000000000000000004569 145.0
DPH3_k127_3198649_12 PTS HPr component phosphorylation site K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000002641 127.0
DPH3_k127_3198649_15 Domain of unknown function (DUF4372) - - - 0.0000003845 56.0
DPH3_k127_3198649_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 3.289e-255 788.0
DPH3_k127_3198649_3 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 9.867e-248 764.0
DPH3_k127_3198649_4 PFAM Sulfotransferase K01014 - 2.8.2.1 3.198e-203 632.0
DPH3_k127_3198649_5 Protein of unknown function (DUF455) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 539.0
DPH3_k127_3198649_6 TIGRFAM HAD-superfamily hydrolase, subfamily IB (PSPase-like) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 455.0
DPH3_k127_3198649_7 PFAM Methionine biosynthesis MetW - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 430.0
DPH3_k127_3198649_8 Belongs to the DnaA family K10763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 369.0
DPH3_k127_3198649_9 Thioesterase superfamily K10806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001811 278.0
DPH3_k127_3268186_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0 1355.0
DPH3_k127_3268186_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0 1176.0
DPH3_k127_3268186_10 EamA-like transporter family K15270 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 555.0
DPH3_k127_3268186_11 TIGRFAM Pilus biogenesis stability type IV, PilW K02656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 466.0
DPH3_k127_3268186_12 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 439.0
DPH3_k127_3268186_13 Tetratricopeptide repeat-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 402.0
DPH3_k127_3268186_14 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 375.0
DPH3_k127_3268186_15 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 281.0
DPH3_k127_3268186_16 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000797 279.0
DPH3_k127_3268186_17 Belongs to the UPF0178 family K09768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003525 271.0
DPH3_k127_3268186_18 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000001915 263.0
DPH3_k127_3268186_19 SpoIIAA-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005414 246.0
DPH3_k127_3268186_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 2.096e-298 916.0
DPH3_k127_3268186_20 Protein of unknown function (DUF465) K09794 - - 0.0000000000000000000000000000000000000001266 151.0
DPH3_k127_3268186_21 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.000000000000000000000000000000003571 128.0
DPH3_k127_3268186_22 PFAM Invasion gene expression up-regulator, SirB - - - 0.000000000000000000000000001045 114.0
DPH3_k127_3268186_23 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000004067 64.0
DPH3_k127_3268186_3 repeat protein - - - 1.267e-274 848.0
DPH3_k127_3268186_4 synthetase, class II (G H P K01892 - 6.1.1.21 1.594e-264 816.0
DPH3_k127_3268186_5 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 3.766e-262 808.0
DPH3_k127_3268186_6 PFAM Rieske 2Fe-2S K00499 - 1.14.15.7 1.462e-253 781.0
DPH3_k127_3268186_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 1.632e-230 717.0
DPH3_k127_3268186_8 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 6.294e-224 695.0
DPH3_k127_3268186_9 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 605.0
DPH3_k127_3313518_0 Protein of unknown function, DUF484 K02488 - 2.7.7.65 2.447e-234 726.0
DPH3_k127_3313518_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 9.801e-218 680.0
DPH3_k127_3313518_2 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 579.0
DPH3_k127_3313518_3 Protein of unknown function (DUF815) K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 562.0
DPH3_k127_3313518_4 PFAM RNA polymerase sigma factor 70, region 4 type 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 361.0
DPH3_k127_3313518_5 Protein of unknown function (DUF1353) - - - 0.0000000000000000000000000000000236 128.0
DPH3_k127_3313518_6 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000000000000000000002828 124.0
DPH3_k127_3313518_7 Protein of unknown function (DUF3619) - - - 0.0000000000000007332 81.0
DPH3_k127_3321787_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 2.189e-283 872.0
DPH3_k127_3321787_1 Protein of unknown function (DUF3422) - - - 5.462e-238 739.0
DPH3_k127_3321787_2 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 461.0
DPH3_k127_3356485_0 Uncharacterized protein conserved in bacteria (DUF2130) - - - 1.704e-243 756.0
DPH3_k127_3356485_1 Ribosomal RNA adenine dimethylase - - - 2.829e-208 648.0
DPH3_k127_3356485_11 Belongs to the 'phage' integrase family - - - 0.0002368 47.0
DPH3_k127_3356485_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 306.0
DPH3_k127_3356485_3 PIN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003722 276.0
DPH3_k127_3356485_4 Transposase IS116/IS110/IS902 family - - - 0.0000000000000000000000000000000000001576 144.0
DPH3_k127_3356485_5 PFAM Transposase IS3 IS911 K07483 - - 0.0000000000000000000000000000000000002706 141.0
DPH3_k127_3356485_6 - - - - 0.0000000000000000000001592 102.0
DPH3_k127_3356485_7 Protein of unknown function DUF45 K07043 - - 0.00000000000000000001339 95.0
DPH3_k127_3356485_8 DDE superfamily endonuclease - - - 0.00000000248 62.0
DPH3_k127_3356485_9 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00004517 49.0
DPH3_k127_339818_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.743e-295 909.0
DPH3_k127_339818_1 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006563 335.0
DPH3_k127_339818_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000288 264.0
DPH3_k127_339818_3 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.00000000000000000000000000000000000000000000000000006196 187.0
DPH3_k127_3402600_0 Flagellar basal body rod FlgEFG protein C-terminal K02396 - - 0.0 1045.0
DPH3_k127_3402600_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 6.209e-320 981.0
DPH3_k127_3402600_10 Flagellar basal body rod protein K02390 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 547.0
DPH3_k127_3402600_11 PFAM Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 474.0
DPH3_k127_3402600_12 Belongs to the flagella basal body rod proteins family K02391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 447.0
DPH3_k127_3402600_13 Beta-lactamase enzyme family K07262 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008636 443.0
DPH3_k127_3402600_14 Belongs to the flagella basal body rod proteins family K02392 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 442.0
DPH3_k127_3402600_15 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004834 428.0
DPH3_k127_3402600_16 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 427.0
DPH3_k127_3402600_17 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 425.0
DPH3_k127_3402600_18 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 412.0
DPH3_k127_3402600_19 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 373.0
DPH3_k127_3402600_2 Belongs to the GARS family K01945 - 6.3.4.13 8.225e-267 825.0
DPH3_k127_3402600_20 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002541 259.0
DPH3_k127_3402600_21 Belongs to the flagella basal body rod proteins family K02388 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004835 247.0
DPH3_k127_3402600_22 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001364 231.0
DPH3_k127_3402600_23 Belongs to the transcriptional regulatory Fis family K03557 - - 0.0000000000000000000000000000000000000000008165 156.0
DPH3_k127_3402600_24 - - - - 0.0000000000000000000000000000000000000005419 148.0
DPH3_k127_3402600_25 Phosphopantetheine attachment site - - - 0.000000000000000000000000000000000000002787 147.0
DPH3_k127_3402600_26 response regulator K02282,K07689 - - 0.000000000000000000000000000000000001832 147.0
DPH3_k127_3402600_3 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 3.441e-234 727.0
DPH3_k127_3402600_4 DeoC/LacD family aldolase K11645 - 4.1.2.13 5.881e-224 694.0
DPH3_k127_3402600_5 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 4.423e-218 679.0
DPH3_k127_3402600_6 Bacterial flagellin N-terminal helical region K02397 - - 1.553e-208 653.0
DPH3_k127_3402600_7 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 3.448e-208 648.0
DPH3_k127_3402600_8 Histidine kinase K07675 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 610.0
DPH3_k127_3402600_9 Rod binding protein K02395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003972 596.0
DPH3_k127_3414457_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 2.371e-286 881.0
DPH3_k127_3414457_1 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000006194 161.0
DPH3_k127_3414457_2 Protein of unknown function (DUF3422) - - - 0.0000000000000000000000000000000001747 132.0
DPH3_k127_3525120_0 Protein of unknown function (DUF3617) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 312.0
DPH3_k127_3525120_1 Protein of unknown function (DUF3375) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 302.0
DPH3_k127_3525120_2 Putative addiction module component - - - 0.000000000007069 66.0
DPH3_k127_3525120_3 type iii restriction K01156 - 3.1.21.5 0.00000004569 57.0
DPH3_k127_356878_0 Molecular chaperone. Has ATPase activity K04079 - - 0.0 1173.0
DPH3_k127_356878_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.54e-208 649.0
DPH3_k127_356878_2 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006894 576.0
DPH3_k127_356878_3 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005436 290.0
DPH3_k127_356878_5 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.000000000000000000003298 99.0
DPH3_k127_3703904_0 Outer membrane efflux protein - - - 0.0 1289.0
DPH3_k127_3703904_1 PFAM Glycosyl transferase, family 2 K11936 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 293.0
DPH3_k127_3746944_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 3.093e-267 824.0
DPH3_k127_3746944_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 6.936e-225 698.0
DPH3_k127_3746944_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 387.0
DPH3_k127_3746944_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 321.0
DPH3_k127_3746944_4 CreA protein K05805 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 302.0
DPH3_k127_3746944_5 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000003132 78.0
DPH3_k127_3746944_6 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000006093 48.0
DPH3_k127_3774914_0 type II secretion system protein E K02454 - - 0.0 1449.0
DPH3_k127_3774914_1 Belongs to the GSP D family K02666 - - 0.0 1208.0
DPH3_k127_3774914_10 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008211 480.0
DPH3_k127_3774914_11 PFAM Integral membrane protein TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009937 436.0
DPH3_k127_3774914_12 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 432.0
DPH3_k127_3774914_13 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 433.0
DPH3_k127_3774914_14 2'-5' RNA ligase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 393.0
DPH3_k127_3774914_15 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007596 376.0
DPH3_k127_3774914_16 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006756 341.0
DPH3_k127_3774914_17 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 339.0
DPH3_k127_3774914_18 PFAM Fimbrial assembly K02663 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003103 326.0
DPH3_k127_3774914_19 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 310.0
DPH3_k127_3774914_2 Patatin-like phospholipase K07001 - - 4.372e-243 752.0
DPH3_k127_3774914_20 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 295.0
DPH3_k127_3774914_21 PFAM Pilus assembly protein K02665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 292.0
DPH3_k127_3774914_22 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005014 291.0
DPH3_k127_3774914_23 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006506 273.0
DPH3_k127_3774914_24 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000004824 250.0
DPH3_k127_3774914_25 - - - - 0.0000000000000000000000000000000000000000000000000000000000000282 216.0
DPH3_k127_3774914_26 Protein of unknown function (DUF2442) - - - 0.00000000000000000000000000000000000000000002017 163.0
DPH3_k127_3774914_27 addiction module antidote protein HigA K21498 - - 0.0000000000000000000000000000000000000000006421 158.0
DPH3_k127_3774914_28 Domain of unknown function (DUF4177) - - - 0.0000000000000000000000000000000000002148 140.0
DPH3_k127_3774914_29 - - - - 0.00000000000000000000000000558 112.0
DPH3_k127_3774914_3 TIGRFAM type IV pilus assembly protein PilM K02662 - - 5.181e-222 690.0
DPH3_k127_3774914_4 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 7.915e-210 656.0
DPH3_k127_3774914_5 Belongs to the peptidase S33 family K01259 - 3.4.11.5 4.792e-209 651.0
DPH3_k127_3774914_6 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 1.061e-208 649.0
DPH3_k127_3774914_7 Signal transduction response regulator, receiver K03415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009536 586.0
DPH3_k127_3774914_8 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 583.0
DPH3_k127_3774914_9 CAAX protease self-immunity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 535.0
DPH3_k127_3843257_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1519.0
DPH3_k127_3843257_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 1.612e-272 839.0
DPH3_k127_3843257_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 3.862e-248 767.0
DPH3_k127_3843257_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 1.105e-245 762.0
DPH3_k127_3843257_4 PFAM Endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 518.0
DPH3_k127_3843257_5 Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 480.0
DPH3_k127_3843257_6 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 416.0
DPH3_k127_3843257_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 339.0
DPH3_k127_3843257_8 CDP-archaeol synthase K19664 - 2.7.7.67 0.00000001832 56.0
DPH3_k127_3843257_9 - - - - 0.000007581 49.0
DPH3_k127_3909269_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 0.0 1170.0
DPH3_k127_3909269_1 glutamate--cysteine ligase - - - 3.727e-202 632.0
DPH3_k127_3909269_2 universal stress protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 562.0
DPH3_k127_3909269_3 succinate dehydrogenase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000000000000000000000003422 227.0
DPH3_k127_3909269_4 Succinate dehydrogenase, hydrophobic K00242 - - 0.000000000000000000000000000001845 126.0
DPH3_k127_3909269_5 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01537 - 3.6.3.8 0.0000000000000001024 80.0
DPH3_k127_3909269_6 - - - - 0.00001206 47.0
DPH3_k127_3962911_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 2072.0
DPH3_k127_3962911_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0 1241.0
DPH3_k127_3962911_10 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009858 503.0
DPH3_k127_3962911_11 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 460.0
DPH3_k127_3962911_12 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 394.0
DPH3_k127_3962911_13 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 295.0
DPH3_k127_3962911_14 CRS1_YhbY K07574 - - 0.00000000000000000000000000000000000000000000000000000000002282 207.0
DPH3_k127_3962911_2 TIGRFAM Oxaloacetate decarboxylase, alpha subunit K01960 - 6.4.1.1 0.0 1174.0
DPH3_k127_3962911_3 Belongs to the glutamate synthase family - - - 6.98e-321 983.0
DPH3_k127_3962911_4 TIGRFAM Acetyl-CoA carboxylase, biotin carboxylase K01959 - 6.4.1.1 3.479e-303 934.0
DPH3_k127_3962911_5 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.618e-291 895.0
DPH3_k127_3962911_6 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 1.852e-281 868.0
DPH3_k127_3962911_7 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 3.85e-280 867.0
DPH3_k127_3962911_8 Belongs to the CarA family K01956 - 6.3.5.5 7.419e-247 763.0
DPH3_k127_3962911_9 TIGRFAM phosphate binding protein K02040 - - 5.564e-201 627.0
DPH3_k127_3994357_0 DNA helicase K03654 - 3.6.4.12 0.0 1144.0
DPH3_k127_3994357_1 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 1.877e-313 960.0
DPH3_k127_3994357_2 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 324.0
DPH3_k127_3994357_3 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 327.0
DPH3_k127_3994357_4 Domain of unknown function (DUF4124) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006121 247.0
DPH3_k127_3994357_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000518 216.0
DPH3_k127_3994357_6 - - - - 0.000000000000000000000000000000008453 126.0
DPH3_k127_4040304_0 RIO1 family K07178 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 548.0
DPH3_k127_4040304_1 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 496.0
DPH3_k127_4040304_2 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000003564 261.0
DPH3_k127_4040304_3 Sodium:dicarboxylate symporter family K11102 - - 0.0000000000002624 69.0
DPH3_k127_4040304_4 - - - - 0.0000000000006563 70.0
DPH3_k127_4070178_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 4.87e-318 974.0
DPH3_k127_4070178_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 2.654e-292 897.0
DPH3_k127_4070178_2 pfkB family carbohydrate kinase K00852,K00856 - 2.7.1.15,2.7.1.20 4.939e-200 623.0
DPH3_k127_4070178_3 endonuclease exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005179 518.0
DPH3_k127_4070178_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009417 340.0
DPH3_k127_4070178_5 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 318.0
DPH3_k127_4070178_6 Glycine-zipper domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 295.0
DPH3_k127_4070178_7 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001546 251.0
DPH3_k127_4070178_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008671 246.0
DPH3_k127_4070178_9 - - - - 0.0000000001163 64.0
DPH3_k127_4271400_0 AMP-dependent synthetase K01897 - 6.2.1.3 0.0 1084.0
DPH3_k127_4271400_1 Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 1.469e-294 907.0
DPH3_k127_4271400_2 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008149 313.0
DPH3_k127_4271400_3 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001208 243.0
DPH3_k127_4271400_4 Helix-hairpin-helix domain - - - 0.00000000000000000000000000000000000001622 148.0
DPH3_k127_4311823_0 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007303 319.0
DPH3_k127_4311823_1 PFAM N-6 DNA methylase K03427 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 295.0
DPH3_k127_4311823_2 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.000000000000000000000000000000000000000000000000000000000005775 209.0
DPH3_k127_4311823_3 SpoVT / AbrB like domain K07172 - - 0.0000000000000000000000000000003882 123.0
DPH3_k127_4311823_4 Restriction modification system DNA specificity domain K01154 - 3.1.21.3 0.00000000000000009444 81.0
DPH3_k127_4311823_5 Type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.00000000003329 65.0
DPH3_k127_4311823_7 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.000006353 50.0
DPH3_k127_4343116_0 Signal transduction histidine kinase K07636 - 2.7.13.3 3.195e-266 821.0
DPH3_k127_4343116_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 490.0
DPH3_k127_4343116_2 TIGRFAM Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 460.0
DPH3_k127_4343116_3 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002398 277.0
DPH3_k127_4343116_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003523 223.0
DPH3_k127_4343116_5 HTH-like domain K07497 - - 0.00000000000000000000000000000000000000000000000000004304 188.0
DPH3_k127_4343116_6 PFAM Integrase, catalytic core K07497 - - 0.000000000000000006512 82.0
DPH3_k127_4343116_7 PEP-CTERM motif - - - 0.00000000006415 70.0
DPH3_k127_4343116_8 PFAM Transposase, IS4-like - - - 0.00000000007678 62.0
DPH3_k127_4376600_0 Response regulator receiver K02487,K03407,K06596 - 2.7.13.3 0.0 2378.0
DPH3_k127_4376600_1 PFAM chemotaxis K02660 - - 0.0 1193.0
DPH3_k127_4379761_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1629.0
DPH3_k127_4379761_1 Neisseria PilC beta-propeller domain K02674 - - 0.0 1508.0
DPH3_k127_4379761_10 DAHP synthetase I family K03856 - 2.5.1.54 2.666e-241 746.0
DPH3_k127_4379761_11 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 3.679e-214 666.0
DPH3_k127_4379761_12 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 4.969e-211 658.0
DPH3_k127_4379761_13 TIGRFAM glycine oxidase ThiO K03153 - 1.4.3.19 5.458e-210 655.0
DPH3_k127_4379761_14 Protein conserved in bacteria - - - 1.286e-204 640.0
DPH3_k127_4379761_15 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 1.98e-199 621.0
DPH3_k127_4379761_16 TYPE 4 fimbrial BIOGENESIS K02672 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 538.0
DPH3_k127_4379761_17 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007856 419.0
DPH3_k127_4379761_18 Response regulator receiver K15012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 346.0
DPH3_k127_4379761_19 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 301.0
DPH3_k127_4379761_2 Belongs to the ClpA ClpB family K03694 - - 0.0 1447.0
DPH3_k127_4379761_20 type IV pilus modification protein PilV K02671 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009864 267.0
DPH3_k127_4379761_21 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009302 258.0
DPH3_k127_4379761_22 Modulates RecA activity K03565 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002054 253.0
DPH3_k127_4379761_23 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000001322 236.0
DPH3_k127_4379761_24 Type II transport protein GspH K08084 - - 0.0000000000000000000000000000000000000000000000000000000000000000003735 233.0
DPH3_k127_4379761_25 Nacht domain - - - 0.00000000000000000000000000000000000000000000000000000000000000006079 226.0
DPH3_k127_4379761_26 Pilus assembly protein PilX - - - 0.000000000000000000000000000000000000000000000000000000000000001711 221.0
DPH3_k127_4379761_27 - - - - 0.00000000000000000000000000000000000000000000000000000000000002156 216.0
DPH3_k127_4379761_28 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000000000000000003914 196.0
DPH3_k127_4379761_29 - - - - 0.000000000000000000000000000000000000000000000000000002857 192.0
DPH3_k127_4379761_3 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1285.0
DPH3_k127_4379761_30 Nacht domain - - - 0.000000000000000000000000000000000000000000000000000171 186.0
DPH3_k127_4379761_31 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.0000000000000000000000000000000000000000000000001227 179.0
DPH3_k127_4379761_32 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000000000000000000000001488 141.0
DPH3_k127_4379761_33 - - - - 0.000000000000000000000000000000000008748 139.0
DPH3_k127_4379761_34 COG2801 Transposase and inactivated derivatives K07497 - - 0.0000000000000003815 79.0
DPH3_k127_4379761_35 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00003292 49.0
DPH3_k127_4379761_36 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00003926 48.0
DPH3_k127_4379761_4 TonB-dependent Receptor Plug Domain K02014 - - 0.0 1151.0
DPH3_k127_4379761_5 Putative diguanylate phosphodiesterase - - - 4.169e-290 894.0
DPH3_k127_4379761_6 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 2.06e-275 847.0
DPH3_k127_4379761_7 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 1.796e-262 810.0
DPH3_k127_4379761_8 Signal transduction histidine kinase K15011 - 2.7.13.3 3.609e-259 801.0
DPH3_k127_4379761_9 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 7.901e-255 788.0
DPH3_k127_443580_0 Uncharacterized protein conserved in bacteria (DUF2309) K09822 - - 0.0 1889.0
DPH3_k127_443580_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus - - - 1.115e-268 834.0
DPH3_k127_443580_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 1.147e-198 621.0
DPH3_k127_443580_3 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 391.0
DPH3_k127_4501952_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1519.0
DPH3_k127_4501952_1 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01537 - 3.6.3.8 0.0 1483.0
DPH3_k127_4501952_10 Uncharacterized protein conserved in bacteria (DUF2325) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009358 346.0
DPH3_k127_4501952_11 Tyrosine phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 325.0
DPH3_k127_4501952_12 Iron-storage protein K03594 - 1.16.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 309.0
DPH3_k127_4501952_13 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 290.0
DPH3_k127_4501952_14 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004518 251.0
DPH3_k127_4501952_15 PFAM transposase, IS4 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000007102 215.0
DPH3_k127_4501952_16 transporter component K07112 - - 0.000000000000000000000000000000000000000000000000000000000009725 209.0
DPH3_k127_4501952_17 transcriptional regulator, ArsR - - - 0.0000000000000000000000000000000000000000000000000000008569 193.0
DPH3_k127_4501952_18 - - - - 0.00000000000000000000000000000286 120.0
DPH3_k127_4501952_19 Hemin uptake protein hemP - - - 0.00000000000000000000008162 99.0
DPH3_k127_4501952_2 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 7.961e-295 910.0
DPH3_k127_4501952_20 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000000000000007847 85.0
DPH3_k127_4501952_3 Acts as a magnesium transporter K06213 - - 1.039e-287 886.0
DPH3_k127_4501952_4 Sugar (and other) transporter - - - 3.981e-262 811.0
DPH3_k127_4501952_5 PFAM Heat shock protein DnaJ, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009328 593.0
DPH3_k127_4501952_6 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 576.0
DPH3_k127_4501952_7 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009371 566.0
DPH3_k127_4501952_8 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 475.0
DPH3_k127_4501952_9 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009385 387.0
DPH3_k127_4516923_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0 1170.0
DPH3_k127_4516923_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1142.0
DPH3_k127_4516923_2 Glutamate-cysteine ligase K01919 - 6.3.2.2 3.168e-281 865.0
DPH3_k127_4516923_3 Multicopper oxidase K00368,K08100 - 1.3.3.5,1.7.2.1 1.077e-227 707.0
DPH3_k127_4516923_4 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005014 601.0
DPH3_k127_4516923_5 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 GO:0000166,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003999,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0012505,GO:0016192,GO:0016208,GO:0016740,GO:0016757,GO:0016763,GO:0017076,GO:0018130,GO:0019438,GO:0030141,GO:0030554,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0034641,GO:0034654,GO:0034774,GO:0036094,GO:0036230,GO:0042119,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046483,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005438 330.0
DPH3_k127_4516923_6 Cytochrome c - - - 0.0000000000000000000000003258 108.0
DPH3_k127_453241_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1767.0
DPH3_k127_453241_1 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.0 1645.0
DPH3_k127_453241_10 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 597.0
DPH3_k127_453241_11 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 593.0
DPH3_k127_453241_12 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008738 547.0
DPH3_k127_453241_13 PFAM Metal-dependent hydrolase HDOD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 531.0
DPH3_k127_453241_14 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 526.0
DPH3_k127_453241_15 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007565 502.0
DPH3_k127_453241_16 uroporphyrinogen III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008082 488.0
DPH3_k127_453241_17 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004406 354.0
DPH3_k127_453241_18 Lumazine binding domain K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 354.0
DPH3_k127_453241_19 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 345.0
DPH3_k127_453241_2 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.0 1429.0
DPH3_k127_453241_20 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003715 339.0
DPH3_k127_453241_21 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 319.0
DPH3_k127_453241_22 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000812 308.0
DPH3_k127_453241_23 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000001958 248.0
DPH3_k127_453241_24 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000008006 230.0
DPH3_k127_453241_25 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000007488 177.0
DPH3_k127_453241_26 PFAM IstB domain protein ATP-binding protein - - - 0.0002543 44.0
DPH3_k127_453241_3 TIGRFAM Sodium sulphate symporter K11106,K14445 - - 1.983e-270 835.0
DPH3_k127_453241_4 Domain of unknown function DUF21 - - - 4.696e-258 797.0
DPH3_k127_453241_5 PFAM Peptidase M16 K07263 - - 4.097e-257 795.0
DPH3_k127_453241_6 Type II secretion system K02653 - - 4.973e-245 759.0
DPH3_k127_453241_7 HemY protein N-terminus K02498 - - 5.802e-227 706.0
DPH3_k127_453241_8 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 1.072e-222 692.0
DPH3_k127_453241_9 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 5.378e-216 672.0
DPH3_k127_4548573_0 Protein conserved in bacteria K06320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 475.0
DPH3_k127_4548573_1 Glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 342.0
DPH3_k127_4548573_2 TIGRFAM methyltransferase FkbM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 329.0
DPH3_k127_4548573_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000002502 242.0
DPH3_k127_4548573_4 - - - - 0.000000000000000000000000000000000000003099 163.0
DPH3_k127_4548573_5 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000000000001469 107.0
DPH3_k127_4548573_6 Methionine biosynthesis protein MetW - - - 0.0000000000000002086 89.0
DPH3_k127_4577168_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0 1370.0
DPH3_k127_4577168_1 pyruvate-flavodoxin oxidoreductase activity - - - 0.0 1162.0
DPH3_k127_4577168_10 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 3.161e-203 634.0
DPH3_k127_4577168_11 ABC transporter K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 503.0
DPH3_k127_4577168_12 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 436.0
DPH3_k127_4577168_13 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 371.0
DPH3_k127_4577168_14 Scaffold protein Nfu/NifU N terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005336 364.0
DPH3_k127_4577168_15 Transcriptional regulator K13643 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009928 310.0
DPH3_k127_4577168_16 NifU-like N terminal domain K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 308.0
DPH3_k127_4577168_17 Universal stress protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003215 266.0
DPH3_k127_4577168_18 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000001581 264.0
DPH3_k127_4577168_19 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000000000000000000000000000004412 217.0
DPH3_k127_4577168_2 Uncharacterized protein family (UPF0051) K09014 - - 1.309e-311 955.0
DPH3_k127_4577168_20 PFAM Uncharacterised protein family UPF0150 - - - 0.00000000000000000000000000000000004707 135.0
DPH3_k127_4577168_21 - - - - 0.0000000000000000000000000000305 121.0
DPH3_k127_4577168_22 HicA toxin of bacterial toxin-antitoxin, - - - 0.00000000000000008308 82.0
DPH3_k127_4577168_3 Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 7.135e-284 874.0
DPH3_k127_4577168_4 - - - - 7.338e-273 841.0
DPH3_k127_4577168_5 PFAM DNA-repair protein, UmuC-like K03502 - - 2.245e-270 834.0
DPH3_k127_4577168_6 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 1.584e-259 801.0
DPH3_k127_4577168_7 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 2.031e-251 781.0
DPH3_k127_4577168_8 Uncharacterized protein family (UPF0051) K09015 - - 4.441e-250 775.0
DPH3_k127_4577168_9 Uncharacterized protein conserved in bacteria (DUF2331) - - - 1.209e-224 698.0
DPH3_k127_4596801_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1801.0
DPH3_k127_4596801_1 Histidine kinase - - - 0.0 1366.0
DPH3_k127_4596801_10 MacB-like periplasmic core domain K02004 - - 4.958e-239 741.0
DPH3_k127_4596801_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 2.854e-207 648.0
DPH3_k127_4596801_12 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006978 552.0
DPH3_k127_4596801_13 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 531.0
DPH3_k127_4596801_14 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009198 472.0
DPH3_k127_4596801_15 PFAM Signal transduction response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009818 421.0
DPH3_k127_4596801_16 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 415.0
DPH3_k127_4596801_17 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 392.0
DPH3_k127_4596801_18 PFAM Exopolysaccharide synthesis, ExoD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 386.0
DPH3_k127_4596801_19 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 385.0
DPH3_k127_4596801_2 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.0 1036.0
DPH3_k127_4596801_20 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 299.0
DPH3_k127_4596801_21 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 282.0
DPH3_k127_4596801_22 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000007419 237.0
DPH3_k127_4596801_23 3-Deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000007366 224.0
DPH3_k127_4596801_24 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000000000000000000005788 194.0
DPH3_k127_4596801_25 alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000009483 142.0
DPH3_k127_4596801_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 6.992e-320 983.0
DPH3_k127_4596801_4 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006152,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016053,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019439,GO:0019510,GO:0019752,GO:0030554,GO:0031667,GO:0033353,GO:0034641,GO:0034655,GO:0034656,GO:0036094,GO:0036293,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046700,GO:0048037,GO:0048511,GO:0048512,GO:0050662,GO:0050667,GO:0050896,GO:0051186,GO:0051187,GO:0051287,GO:0055086,GO:0070482,GO:0071268,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097458,GO:0098604,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901657,GO:1901658 3.3.1.1 1.283e-307 944.0
DPH3_k127_4596801_5 Ribonuclease E/G family K08301 - - 4.004e-298 916.0
DPH3_k127_4596801_6 PFAM Peptidase M48 - - - 4.22e-291 897.0
DPH3_k127_4596801_7 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 2.252e-259 803.0
DPH3_k127_4596801_8 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 1.42e-243 756.0
DPH3_k127_4596801_9 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 5.46e-243 752.0
DPH3_k127_468059_0 RNA polymerase recycling family C-terminal K03580 - - 0.0 1699.0
DPH3_k127_468059_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1631.0
DPH3_k127_468059_10 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 505.0
DPH3_k127_468059_11 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 481.0
DPH3_k127_468059_12 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003806 479.0
DPH3_k127_468059_13 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 450.0
DPH3_k127_468059_14 Protein of unknown function (DUF2490) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 364.0
DPH3_k127_468059_15 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 342.0
DPH3_k127_468059_16 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 336.0
DPH3_k127_468059_17 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 319.0
DPH3_k127_468059_18 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006514 306.0
DPH3_k127_468059_19 Belongs to the skp family K06142 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 289.0
DPH3_k127_468059_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1420.0
DPH3_k127_468059_20 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 287.0
DPH3_k127_468059_21 T5orf172 - - - 0.00000000000000000000000000000000000000000000000000000000000002603 214.0
DPH3_k127_468059_22 Cytochrome C oxidase, cbb3-type, subunit III K12263 - - 0.000000000000000000000000000000000000000000000000000001963 191.0
DPH3_k127_468059_23 Restriction endonuclease - - - 0.00000000000000000000000000000000006184 134.0
DPH3_k127_468059_24 cytochrome - - - 0.0001073 46.0
DPH3_k127_468059_3 zinc metalloprotease K11749 - - 1.321e-282 870.0
DPH3_k127_468059_4 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 4.975e-275 850.0
DPH3_k127_468059_5 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 1.041e-243 757.0
DPH3_k127_468059_6 PFAM Glutaredoxin - - - 1.99e-225 704.0
DPH3_k127_468059_7 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 2.07e-206 642.0
DPH3_k127_468059_8 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 539.0
DPH3_k127_468059_9 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005882 508.0
DPH3_k127_470959_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 1.054e-284 877.0
DPH3_k127_470959_1 PEP-CTERM motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 386.0
DPH3_k127_470959_2 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009449 245.0
DPH3_k127_4731878_0 HDOD domain - - - 1.391e-248 769.0
DPH3_k127_4731878_1 type II secretion system protein E K02670 - - 2.16e-235 729.0
DPH3_k127_4731878_2 PFAM Type II secretion system protein E K02669,K12203 - - 9.246e-217 674.0
DPH3_k127_4731878_3 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 403.0
DPH3_k127_4774212_0 Tetratricopeptide repeat - - - 0.0 1080.0
DPH3_k127_4774212_1 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 1e-323 992.0
DPH3_k127_4774212_10 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 390.0
DPH3_k127_4774212_11 PFAM Filamentation induced by cAMP death on - - - 0.0000000000000000000000000000000000000000000000000278 179.0
DPH3_k127_4774212_12 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.00000000000000000000000000000000000000000000001214 172.0
DPH3_k127_4774212_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 6.324e-235 728.0
DPH3_k127_4774212_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 8.366e-197 614.0
DPH3_k127_4774212_4 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 536.0
DPH3_k127_4774212_5 Belongs to the ParA family K03609 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008368 522.0
DPH3_k127_4774212_6 Glycyl-tRNA synthetase K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 488.0
DPH3_k127_4774212_7 Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization K03610 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 466.0
DPH3_k127_4774212_8 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 419.0
DPH3_k127_4774212_9 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 394.0
DPH3_k127_4783032_0 His Kinase A (phosphoacceptor) domain - - - 1.242e-282 871.0
DPH3_k127_4783032_1 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005571 247.0
DPH3_k127_4783032_2 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000001586 120.0
DPH3_k127_4783032_3 Competence protein ComEC Rec2 K02238 - - 0.00000000000000000001074 91.0
DPH3_k127_4880927_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0 1440.0
DPH3_k127_4880927_1 Bacterial protein of unknown function (DUF853) K06915 - - 1.559e-293 903.0
DPH3_k127_4880927_2 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005472 599.0
DPH3_k127_4880927_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001557 253.0
DPH3_k127_4931563_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1598.0
DPH3_k127_4931563_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1255.0
DPH3_k127_4931563_10 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004424 329.0
DPH3_k127_4931563_11 DEAD-like helicase, N-terminal - - - 0.00000000000000000000000000000000000000000000000007341 177.0
DPH3_k127_4931563_12 PFAM Copper resistance protein CopC K07156 - - 0.00000000000000000000000000001148 119.0
DPH3_k127_4931563_2 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 4.588e-290 892.0
DPH3_k127_4931563_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 4.571e-284 874.0
DPH3_k127_4931563_4 TIGRFAM type I secretion outer membrane protein, TolC K12340 - - 1.01e-206 650.0
DPH3_k127_4931563_5 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 4.408e-206 644.0
DPH3_k127_4931563_6 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006622 535.0
DPH3_k127_4931563_7 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004215 495.0
DPH3_k127_4931563_8 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 479.0
DPH3_k127_4931563_9 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 411.0
DPH3_k127_5269505_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1621.0
DPH3_k127_5269505_1 NlpB/DapX lipoprotein K07287 - - 4.877e-229 711.0
DPH3_k127_5269505_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 579.0
DPH3_k127_5269505_3 PFAM transposase, IS4 family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008866 483.0
DPH3_k127_5269505_4 SMART Diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000001367 210.0
DPH3_k127_5280048_0 Molybdopterin oxidoreductase Fe4S4 domain K00336 - 1.6.5.3 0.0 1480.0
DPH3_k127_5280048_1 chain 5 L K00341 - 1.6.5.3 0.0 1235.0
DPH3_k127_5280048_10 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008872 458.0
DPH3_k127_5280048_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 388.0
DPH3_k127_5280048_12 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 361.0
DPH3_k127_5280048_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 337.0
DPH3_k127_5280048_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 336.0
DPH3_k127_5280048_15 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009599 316.0
DPH3_k127_5280048_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000002201 235.0
DPH3_k127_5280048_17 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000000000000000000000000000000002784 198.0
DPH3_k127_5280048_18 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000000000000000000001058 178.0
DPH3_k127_5280048_19 BNR repeat-like domain - - - 0.0001945 46.0
DPH3_k127_5280048_2 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 4.704e-311 954.0
DPH3_k127_5280048_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 2.263e-293 899.0
DPH3_k127_5280048_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 2.029e-287 885.0
DPH3_k127_5280048_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 5.665e-280 860.0
DPH3_k127_5280048_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 3.812e-226 703.0
DPH3_k127_5280048_7 Phosphate transport system permease protein K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 579.0
DPH3_k127_5280048_8 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 575.0
DPH3_k127_5280048_9 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 504.0
DPH3_k127_5280721_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0 1420.0
DPH3_k127_5280721_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1253.0
DPH3_k127_5280721_10 Small metal-binding protein - - - 0.000000000000000000000000000000000000000000000000001484 185.0
DPH3_k127_5280721_11 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.0000000000000000000000000000000000000000000002482 168.0
DPH3_k127_5280721_12 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000000000000000005404 122.0
DPH3_k127_5280721_13 PFAM aminotransferase, class I K14260 - 2.6.1.2,2.6.1.66 0.0000000000000000001085 89.0
DPH3_k127_5280721_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 6.441e-220 682.0
DPH3_k127_5280721_3 Lysin motif K06194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 605.0
DPH3_k127_5280721_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 506.0
DPH3_k127_5280721_5 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 474.0
DPH3_k127_5280721_6 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005048 404.0
DPH3_k127_5280721_7 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 341.0
DPH3_k127_5280721_8 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000000000000000000000000000000007015 235.0
DPH3_k127_5280721_9 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000000000000000003148 226.0
DPH3_k127_533073_0 Acyltransferase family - - - 3.722e-213 664.0
DPH3_k127_533073_1 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 531.0
DPH3_k127_533073_2 Transposase K07486 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611 522.0
DPH3_k127_533073_3 Uncharacterized protein family, UPF0114 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 388.0
DPH3_k127_533073_4 Belongs to the CinA family K03743 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 323.0
DPH3_k127_533073_5 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.00000000000000000000000000000000000000000000000000165 182.0
DPH3_k127_5347553_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1572.0
DPH3_k127_5347553_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1298.0
DPH3_k127_5347553_10 Protein of unknown function (DUF2905) - - - 0.00000000000000000000000000000000004024 134.0
DPH3_k127_5347553_11 - - - - 0.000000000000000007451 85.0
DPH3_k127_5347553_2 Participates in both transcription termination and antitermination K02600 - - 2.483e-299 920.0
DPH3_k127_5347553_3 Nickel-dependent hydrogenase K00436 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 8.598e-279 859.0
DPH3_k127_5347553_4 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 2.857e-197 616.0
DPH3_k127_5347553_5 NADH:flavin oxidoreductase / NADH oxidase family K10680 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 604.0
DPH3_k127_5347553_6 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008829 520.0
DPH3_k127_5347553_7 Lipocalin-like domain K03098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 329.0
DPH3_k127_5347553_8 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 303.0
DPH3_k127_5347553_9 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002121 251.0
DPH3_k127_5352553_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 3.214e-282 868.0
DPH3_k127_5352553_1 ABC-type uncharacterized transport system - - - 3.309e-268 828.0
DPH3_k127_5352553_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253 480.0
DPH3_k127_5352553_3 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005046 452.0
DPH3_k127_5352553_4 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007301 441.0
DPH3_k127_5352553_5 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 424.0
DPH3_k127_5352553_6 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 335.0
DPH3_k127_5352553_7 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000000000543 164.0
DPH3_k127_536410_0 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.0 1704.0
DPH3_k127_536410_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0 1461.0
DPH3_k127_536410_10 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000000000000006109 137.0
DPH3_k127_536410_2 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.0 1129.0
DPH3_k127_536410_3 PFAM Metal-dependent hydrolase HDOD - - - 1.46e-296 915.0
DPH3_k127_536410_4 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 2.122e-286 880.0
DPH3_k127_536410_5 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 469.0
DPH3_k127_536410_6 Sporulation related domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 434.0
DPH3_k127_536410_7 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 392.0
DPH3_k127_536410_8 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 385.0
DPH3_k127_536410_9 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739 304.0
DPH3_k127_5382692_0 ABC transporter transmembrane region K12536 - - 1.172e-211 659.0
DPH3_k127_5382692_1 PFAM NAD-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 517.0
DPH3_k127_5382692_2 Glycosyltransferase like family K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 468.0
DPH3_k127_5382692_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 400.0
DPH3_k127_5434846_0 PFAM Copper resistance D K07245 - - 0.0 1312.0
DPH3_k127_5434846_1 DNA polymerase X family K02347 - - 0.0 1115.0
DPH3_k127_5434846_10 Archease protein family (MTH1598/TM1083) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001425 271.0
DPH3_k127_5434846_2 PFAM aminotransferase, class I K14267 - 2.6.1.17 5.415e-253 781.0
DPH3_k127_5434846_3 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 566.0
DPH3_k127_5434846_4 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 549.0
DPH3_k127_5434846_5 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 440.0
DPH3_k127_5434846_6 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000521 416.0
DPH3_k127_5434846_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003628 312.0
DPH3_k127_5434846_8 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 303.0
DPH3_k127_5434846_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 294.0
DPH3_k127_554713_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0 1201.0
DPH3_k127_554713_1 lipid kinase activity - - - 0.0 1173.0
DPH3_k127_554713_10 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005857 528.0
DPH3_k127_554713_11 Protein of unknown function (DUF692) K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 514.0
DPH3_k127_554713_12 MobA-like NTP transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 513.0
DPH3_k127_554713_13 two-component system sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 475.0
DPH3_k127_554713_14 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006526 400.0
DPH3_k127_554713_15 Protein of unknown function (DUF2959) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 363.0
DPH3_k127_554713_16 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 310.0
DPH3_k127_554713_17 Putative DNA-binding domain K09929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000012 279.0
DPH3_k127_554713_18 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007877 250.0
DPH3_k127_554713_19 - - - - 0.00000000000000000000000000000000000000009141 154.0
DPH3_k127_554713_2 ABC transporter K06147,K18893 - - 0.0 1171.0
DPH3_k127_554713_20 Universal stress protein family - - - 0.000000000000000000000000000000001345 134.0
DPH3_k127_554713_21 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000002615 82.0
DPH3_k127_554713_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 2.325e-310 953.0
DPH3_k127_554713_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 5.314e-264 814.0
DPH3_k127_554713_5 Sulfate permease family - - - 1.322e-234 731.0
DPH3_k127_554713_6 acetyltransferase - - - 4.346e-223 695.0
DPH3_k127_554713_7 PFAM Permease YjgP YjgQ K07091 - - 5.893e-204 637.0
DPH3_k127_554713_8 PFAM Permease YjgP YjgQ K11720 - - 1.941e-203 638.0
DPH3_k127_554713_9 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000452 554.0
DPH3_k127_5551886_0 Acetyltransferase (GNAT) domain - - - 0.0 1078.0
DPH3_k127_5551886_1 SMART ATPase, AAA type, core K09691 - - 1.039e-213 670.0
DPH3_k127_5551886_2 Glycosyltransferase like family 2 K20444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009844 474.0
DPH3_k127_5551886_3 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 381.0
DPH3_k127_5551886_4 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K20444 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 379.0
DPH3_k127_5551886_5 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000282 289.0
DPH3_k127_5551886_6 Transport permease protein K09690 - - 0.00000000000000000000000000000000000000000000000005094 178.0
DPH3_k127_5551886_7 transferase activity, transferring glycosyl groups K00745,K12988,K18704 - 2.4.1.166,2.7.8.14,2.7.8.47 0.0000000000000000000000000000000000000000000000008548 185.0
DPH3_k127_5551886_8 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000001041 156.0
DPH3_k127_5551886_9 Glycosyltransferase like family 2 - - - 0.000000000000000000000001351 104.0
DPH3_k127_5552345_0 Protein of unknown function (DUF3570) - - - 0.0 1443.0
DPH3_k127_5552345_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007151 441.0
DPH3_k127_5552345_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 316.0
DPH3_k127_5552345_3 Redoxin domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007307 289.0
DPH3_k127_5552345_4 - - - - 0.00000000000000000000000000000000000000000000000000003861 191.0
DPH3_k127_5552345_5 Domain of unknown function (DUF4266) - - - 0.00000000000000000000000000003358 117.0
DPH3_k127_5578906_0 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 1.711e-241 749.0
DPH3_k127_5578906_1 MltA specific insert domain K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 499.0
DPH3_k127_5578906_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 473.0
DPH3_k127_5578906_3 PEP-CTERM motif - - - 0.00000000000000000000000000000000000004393 150.0
DPH3_k127_5578906_4 PFAM Integrase, catalytic core K07497 - - 0.00003723 46.0
DPH3_k127_5595632_0 Domain of Unknown Function (DUF748) - - - 0.0 1825.0
DPH3_k127_5595632_1 PFAM Copper resistance D K07245 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 508.0
DPH3_k127_5595632_2 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004073 298.0
DPH3_k127_5595632_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007732 239.0
DPH3_k127_5640677_0 Signal transduction response regulator, receiver - - - 1.761e-231 718.0
DPH3_k127_5640677_1 PFAM Transposase, IS4-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 354.0
DPH3_k127_5640677_2 transposase activity - - - 0.00000000000000000000000008007 108.0
DPH3_k127_5640677_3 Transposase DDE domain group 1 - - - 0.0000000000000000634 82.0
DPH3_k127_5640677_4 transposition - - - 0.0000000000000006696 78.0
DPH3_k127_5640677_5 - - - - 0.00000000001041 75.0
DPH3_k127_5640677_6 Histidine kinase - - - 0.00000008698 55.0
DPH3_k127_5640677_7 - - - - 0.000007548 57.0
DPH3_k127_5685161_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0 1084.0
DPH3_k127_5685161_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007505 308.0
DPH3_k127_5685161_2 Sel1 domain protein repeat-containing protein K07126 - - 0.0005303 44.0
DPH3_k127_5733747_0 PFAM Peptidase S45, penicillin amidase K01434 - 3.5.1.11 0.0 1424.0
DPH3_k127_5733747_1 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0 1283.0
DPH3_k127_5733747_10 FlgN protein K02399 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004259 269.0
DPH3_k127_5733747_11 PFAM Anti-sigma-28 factor, FlgM K02398 - - 0.00000000000000000000000000000000000000000000000000006674 187.0
DPH3_k127_5733747_12 ISXO2-like transposase domain - - - 0.0003504 43.0
DPH3_k127_5733747_2 signal recognition particle SRP54 K02404 - - 2.615e-247 766.0
DPH3_k127_5733747_3 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 2.62e-218 680.0
DPH3_k127_5733747_4 MotA/TolQ/ExbB proton channel family K02556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 483.0
DPH3_k127_5733747_5 Protein of unknown function (DUF3025) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 479.0
DPH3_k127_5733747_6 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007687 465.0
DPH3_k127_5733747_7 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 461.0
DPH3_k127_5733747_8 Etoposide-induced protein 2.4 (EI24) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 427.0
DPH3_k127_5733747_9 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 384.0
DPH3_k127_5799836_0 Major Facilitator Superfamily - - - 1.005e-242 752.0
DPH3_k127_5799836_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 4.28e-199 621.0
DPH3_k127_5799836_2 Dioxygenase K00449 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 359.0
DPH3_k127_5799836_3 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 338.0
DPH3_k127_5799836_4 PFAM Smr protein MutS2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701 324.0
DPH3_k127_5799836_5 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000000000000000000000000000000000000000000000000000000003659 235.0
DPH3_k127_5810831_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1158.0
DPH3_k127_5810831_1 FAD linked oxidases, C-terminal domain K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 1.509e-317 972.0
DPH3_k127_5810831_10 anaerobic respiration K10535 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015975,GO:0015980,GO:0016491,GO:0016661,GO:0016663,GO:0019329,GO:0019331,GO:0034641,GO:0042597,GO:0044237,GO:0044281,GO:0044464,GO:0045333,GO:0047991,GO:0055114 1.7.2.6 0.0000000009392 61.0
DPH3_k127_5810831_2 4Fe-4S double cluster binding domain K11473 - - 4.429e-259 799.0
DPH3_k127_5810831_3 SMART Peptidoglycan-binding Lysin subgroup K16291 - - 1.566e-220 687.0
DPH3_k127_5810831_4 FAD linked oxidase K00104,K11472 - 1.1.3.15 7.792e-199 623.0
DPH3_k127_5810831_5 Carotenoid biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 567.0
DPH3_k127_5810831_6 Asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004806 565.0
DPH3_k127_5810831_7 PFAM 6-phosphogluconate dehydrogenase, NAD-binding K00042 - 1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 556.0
DPH3_k127_5810831_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009692 478.0
DPH3_k127_5810831_9 PFAM Transposase, IS4-like - - - 0.00000000000000000000000000000000000000000000000000000417 190.0
DPH3_k127_5891475_0 protein synthesis factor, GTP-binding K06207 - - 0.0 1189.0
DPH3_k127_5891475_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 490.0
DPH3_k127_5891475_2 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 488.0
DPH3_k127_5891475_3 domain, Protein K00703,K07082 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000227 256.0
DPH3_k127_5891475_4 divalent ion tolerance protein K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 - 0.000000000000000000000000000000000000000000000000000000000000000573 219.0
DPH3_k127_5891475_5 - - - - 0.000000000000000000000000000001647 123.0
DPH3_k127_606995_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0 1169.0
DPH3_k127_606995_1 SMART Diguanylate phosphodiesterase - - - 0.0 1082.0
DPH3_k127_606995_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 1.836e-245 764.0
DPH3_k127_606995_3 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 564.0
DPH3_k127_606995_4 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 525.0
DPH3_k127_606995_5 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 485.0
DPH3_k127_606995_6 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 377.0
DPH3_k127_606995_7 Belongs to the HpcH HpaI aldolase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.00000000000000000000000000000000000000001556 153.0
DPH3_k127_606995_8 Trm112p-like protein K09791 - - 0.0000000000000000000000000000006062 121.0
DPH3_k127_6120938_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 9.73e-322 985.0
DPH3_k127_6120938_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 7.019e-288 885.0
DPH3_k127_6120938_2 PFAM Alanine dehydrogenase PNT K00324 - 1.6.1.2 2.008e-224 698.0
DPH3_k127_6120938_3 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 361.0
DPH3_k127_6120938_4 4TM region of pyridine nucleotide transhydrogenase, mitoch K00322,K00324 - 1.6.1.1,1.6.1.2 0.0000000000000000000000000000002828 124.0
DPH3_k127_6120938_5 4TM region of pyridine nucleotide transhydrogenase, mitoch K00322,K00324 - 1.6.1.1,1.6.1.2 0.0000000000000006218 77.0
DPH3_k127_6128243_0 Peptidase family U32 C-terminal domain K08303 - - 1.297e-233 724.0
DPH3_k127_6128243_1 PFAM alpha beta hydrolase K07019 - - 1.024e-212 662.0
DPH3_k127_6128243_2 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000705 504.0
DPH3_k127_6128243_3 hydrolase of the alpha beta superfamily K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 386.0
DPH3_k127_6128243_4 Ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000001308 218.0
DPH3_k127_6170821_0 Binding-protein-dependent transport system inner membrane component K02011 - - 0.0 1012.0
DPH3_k127_6170821_1 50S ribosome-binding GTPase K06946 - - 6.219e-304 935.0
DPH3_k127_6170821_10 - - - - 0.0004585 44.0
DPH3_k127_6170821_2 Putative peptidoglycan binding domain K21470 - - 5.69e-297 917.0
DPH3_k127_6170821_3 PFAM Peptidase M18 K01267 - 3.4.11.21 5.679e-259 800.0
DPH3_k127_6170821_4 Domain of unknown function (DUF697) - - - 8.724e-248 767.0
DPH3_k127_6170821_5 Bacterial extracellular solute-binding protein K02012 - - 1.613e-208 649.0
DPH3_k127_6170821_6 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 477.0
DPH3_k127_6170821_7 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 376.0
DPH3_k127_6170821_8 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000005765 244.0
DPH3_k127_6170821_9 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.0000000007151 59.0
DPH3_k127_6214836_0 DNA topoisomerase, type IA, central K03169 - 5.99.1.2 0.0 1640.0
DPH3_k127_6214836_1 DNA recombination-mediator protein A K04096 - - 3.851e-218 679.0
DPH3_k127_6214836_2 Lysin motif - - - 8.419e-211 662.0
DPH3_k127_6214836_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008936 565.0
DPH3_k127_6214836_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 352.0
DPH3_k127_6214836_5 Belongs to the Smg family K03747 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 310.0
DPH3_k127_6214836_6 - - - - 0.0000000000000000000000000000000000000000008581 156.0
DPH3_k127_6214836_7 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000775 138.0
DPH3_k127_6233248_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1481.0
DPH3_k127_6233248_1 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 0.0 1333.0
DPH3_k127_6233248_2 Belongs to the glycosyl hydrolase 57 family - - - 0.0 1097.0
DPH3_k127_6233248_3 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 9.118e-272 838.0
DPH3_k127_6233248_4 PFAM Transposase, IS4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000385 220.0
DPH3_k127_6233248_5 PFAM Chemotaxis methyl-accepting receptor, signalling K03406,K03776,K05874 - - 0.0005401 43.0
DPH3_k127_6306497_0 PFAM MotA TolQ ExbB proton channel K03561 - - 8.421e-220 691.0
DPH3_k127_6306497_1 Protein of unknown function (DUF3450) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005986 419.0
DPH3_k127_6306497_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 368.0
DPH3_k127_6306497_3 PFAM MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 333.0
DPH3_k127_6306497_4 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000000000000000000000000000000000000000000001731 231.0
DPH3_k127_6306497_5 Phosphate-starvation-inducible E - - - 0.000000000000000000000000000000000000000000000000005065 181.0
DPH3_k127_6310106_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.489e-268 828.0
DPH3_k127_6310106_1 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 558.0
DPH3_k127_6310106_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000596 534.0
DPH3_k127_6310106_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007928 335.0
DPH3_k127_6310106_4 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 292.0
DPH3_k127_6310106_5 FR47-like protein - - - 0.000000000000000000000000000000000000000000000000000000000001832 213.0
DPH3_k127_6310106_6 FR47-like protein - - - 0.0000000000000699 71.0
DPH3_k127_6383756_0 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor - - - 7.182e-314 964.0
DPH3_k127_6383756_1 SMART Diguanylate cyclase K13590 - 2.7.7.65 2.136e-307 948.0
DPH3_k127_6383756_2 TIGRFAM Diguanylate cyclase K13590 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 477.0
DPH3_k127_6383756_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 397.0
DPH3_k127_6383756_4 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 386.0
DPH3_k127_6383756_5 HDOD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 387.0
DPH3_k127_6383756_6 PFAM Transposase, IS4-like K07481 - - 0.0000000000000000000002728 98.0
DPH3_k127_6442615_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1842.0
DPH3_k127_6442615_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 585.0
DPH3_k127_6442615_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 314.0
DPH3_k127_6442615_3 - - - - 0.000000000000000000000006149 102.0
DPH3_k127_6442615_4 DDE superfamily endonuclease - - - 0.00000000000000000001387 91.0
DPH3_k127_6506152_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 1.916e-241 747.0
DPH3_k127_6506152_1 Sodium:dicarboxylate symporter family K11102 - - 5.334e-236 733.0
DPH3_k127_6506152_2 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 4.203e-205 638.0
DPH3_k127_6506152_3 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 473.0
DPH3_k127_6623082_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0 1091.0
DPH3_k127_6623082_1 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 6.019e-244 754.0
DPH3_k127_6623082_10 PFAM Cytochrome c, class I K08738 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000000000000000000000000000005863 190.0
DPH3_k127_6623082_11 Belongs to the UPF0250 family K09158 - - 0.000000000000000000000000000000000000000000000000456 175.0
DPH3_k127_6623082_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 1.33e-206 642.0
DPH3_k127_6623082_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 564.0
DPH3_k127_6623082_4 PFAM Aminotransferase, class IV K00824 - 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 548.0
DPH3_k127_6623082_5 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009055 519.0
DPH3_k127_6623082_6 Protein of unknown function (DUF2914) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 418.0
DPH3_k127_6623082_7 Nudix hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 372.0
DPH3_k127_6623082_8 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 344.0
DPH3_k127_6623082_9 OsmC-like protein K07397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001386 276.0
DPH3_k127_6667127_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1740.0
DPH3_k127_6667127_1 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 0.0 1555.0
DPH3_k127_6667127_10 amine dehydrogenase activity - - - 6.327e-250 792.0
DPH3_k127_6667127_11 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 2.231e-237 734.0
DPH3_k127_6667127_12 Belongs to the sulfur carrier protein TusA family - - - 1.867e-236 734.0
DPH3_k127_6667127_13 Acyl-CoA dehydrogenase, C-terminal domain - - - 1.446e-221 691.0
DPH3_k127_6667127_14 Belongs to the GcvT family K06980 - - 4.615e-213 664.0
DPH3_k127_6667127_15 Sulfotransferase family - - - 9.183e-201 625.0
DPH3_k127_6667127_16 cysteine protease - - - 1.773e-196 615.0
DPH3_k127_6667127_17 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 6.796e-194 606.0
DPH3_k127_6667127_18 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 606.0
DPH3_k127_6667127_19 Uncharacterized conserved protein (DUF2278) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 597.0
DPH3_k127_6667127_2 Biotin-lipoyl like K01993,K16922 - - 0.0 1480.0
DPH3_k127_6667127_20 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 578.0
DPH3_k127_6667127_21 PFAM Phosphoribulokinase uridine kinase K00855 - 2.7.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003365 571.0
DPH3_k127_6667127_22 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008686 554.0
DPH3_k127_6667127_23 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005547 520.0
DPH3_k127_6667127_24 PFAM formate nitrite transporter K02598,K21993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007184 506.0
DPH3_k127_6667127_25 Cytokinin riboside 5'-monophosphate phosphoribohydrolase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 484.0
DPH3_k127_6667127_26 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007548 460.0
DPH3_k127_6667127_27 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007866 436.0
DPH3_k127_6667127_28 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007503 436.0
DPH3_k127_6667127_29 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 332.0
DPH3_k127_6667127_3 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.0 1446.0
DPH3_k127_6667127_30 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004883 318.0
DPH3_k127_6667127_31 Glycine-zipper domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 297.0
DPH3_k127_6667127_32 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 292.0
DPH3_k127_6667127_33 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005933 263.0
DPH3_k127_6667127_34 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006365 258.0
DPH3_k127_6667127_35 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001148 259.0
DPH3_k127_6667127_36 - K19168 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004301 256.0
DPH3_k127_6667127_37 Protein of unknown function (DUF2782) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008393 247.0
DPH3_k127_6667127_38 - - - - 0.00000000000000000000000000000000000000000000000000000000000003404 216.0
DPH3_k127_6667127_39 - - - - 0.000000000000000000000000000000000000000000000000000000000629 203.0
DPH3_k127_6667127_4 UvrD REP K03657 - 3.6.4.12 0.0 1390.0
DPH3_k127_6667127_41 - - - - 0.000000000000000000002719 93.0
DPH3_k127_6667127_42 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000007283 64.0
DPH3_k127_6667127_43 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity K00057 - 1.1.1.94 0.0000000002899 61.0
DPH3_k127_6667127_44 ABC-2 family transporter protein - - - 0.0000007159 52.0
DPH3_k127_6667127_5 Alpha amylase, catalytic domain K01176 - 3.2.1.1 0.0 1313.0
DPH3_k127_6667127_6 Dynamin family - - - 3.55e-305 937.0
DPH3_k127_6667127_7 Outer membrane efflux protein K18139 - - 4.4e-288 887.0
DPH3_k127_6667127_8 Bacterial protein of unknown function (DUF839) K07093 - - 1.244e-262 813.0
DPH3_k127_6667127_9 Involved in the biosynthesis of porphyrin-containing compound - - - 9.499e-254 784.0
DPH3_k127_6749698_0 Sodium:alanine symporter family K03310 - - 3.146e-291 896.0
DPH3_k127_6749698_1 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 1.309e-278 859.0
DPH3_k127_6749698_10 MlaC protein K07323 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 380.0
DPH3_k127_6749698_11 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000078 291.0
DPH3_k127_6749698_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000003567 216.0
DPH3_k127_6749698_13 transporter antisigma-factor antagonist STAS K07122 - - 0.00000000000000000000000000000000000000000000000000000004197 197.0
DPH3_k127_6749698_14 - K07039 - - 0.0000000000000000000000000000000000008106 139.0
DPH3_k127_6749698_15 ThiS family K03154 - - 0.00000000000000000000000000000000008667 133.0
DPH3_k127_6749698_16 PFAM transposase, IS4 family protein - - - 0.000000000000000000000000000006247 119.0
DPH3_k127_6749698_18 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000001713 70.0
DPH3_k127_6749698_19 - - - - 0.000000276 54.0
DPH3_k127_6749698_2 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003935 591.0
DPH3_k127_6749698_20 DNA-binding transcription factor activity K10680 - - 0.000006704 49.0
DPH3_k127_6749698_3 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009727 533.0
DPH3_k127_6749698_4 nuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 527.0
DPH3_k127_6749698_5 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 501.0
DPH3_k127_6749698_6 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009401 444.0
DPH3_k127_6749698_7 Nucleotidyl transferase K00992 - 2.7.7.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 434.0
DPH3_k127_6749698_8 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 422.0
DPH3_k127_6749698_9 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 398.0
DPH3_k127_6822631_0 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 550.0
DPH3_k127_6822631_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005346 238.0
DPH3_k127_6822631_2 SURF4 family K15977 - - 0.0000000000000000000000000000000000000000000000000000000000000006078 220.0
DPH3_k127_6822631_3 glutamate--cysteine ligase - - - 0.0000000000000000000000000000000000102 136.0
DPH3_k127_6824557_0 GGDEF domain - - - 5.56e-286 880.0
DPH3_k127_6824557_1 Subtilase family K08651,K14645 - 3.4.21.66 1.213e-246 765.0
DPH3_k127_6824557_2 PFAM Glycosyl transferase, family 2 K11936 - - 2.686e-242 751.0
DPH3_k127_6824557_3 Putative zinc-finger - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 286.0
DPH3_k127_6949822_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 2.735e-285 877.0
DPH3_k127_6949822_1 dehydrogenase, E1 component K00164 - 1.2.4.2 2.979e-277 857.0
DPH3_k127_6949822_2 succinate dehydrogenase fumarate reductase K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 482.0
DPH3_k127_6949822_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 423.0
DPH3_k127_6949822_4 Flavinator of succinate dehydrogenase K09159 - - 0.000000000000000000000000000000000000000008699 154.0
DPH3_k127_6949822_5 endonuclease activity - - - 0.00000000000000000000000000006801 116.0
DPH3_k127_6952943_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2696.0
DPH3_k127_6952943_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2640.0
DPH3_k127_6952943_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 419.0
DPH3_k127_6952943_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 355.0
DPH3_k127_6952943_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007858 312.0
DPH3_k127_6952943_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000076 279.0
DPH3_k127_6952943_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000000000000000125 208.0
DPH3_k127_6952943_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000000000000000000000000000000000000000000002958 200.0
DPH3_k127_6952943_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000005157 80.0
DPH3_k127_6952943_9 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000002578 49.0
DPH3_k127_6953692_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1747.0
DPH3_k127_6953692_1 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 0.0 1139.0
DPH3_k127_6953692_10 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 2.878e-211 658.0
DPH3_k127_6953692_11 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 556.0
DPH3_k127_6953692_12 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 550.0
DPH3_k127_6953692_13 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 505.0
DPH3_k127_6953692_14 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000473 428.0
DPH3_k127_6953692_15 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007755 385.0
DPH3_k127_6953692_16 TIGRFAM Acetolactate synthase, small subunit K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 312.0
DPH3_k127_6953692_17 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008425 300.0
DPH3_k127_6953692_18 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003089 251.0
DPH3_k127_6953692_19 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001018 223.0
DPH3_k127_6953692_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0 1071.0
DPH3_k127_6953692_20 - - - - 0.000000000000000000000000000000000000000000000000000000000000002558 218.0
DPH3_k127_6953692_21 - - - - 0.000000000000000000000000000000000000000007688 156.0
DPH3_k127_6953692_22 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000000000009582 154.0
DPH3_k127_6953692_23 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000000000000000000001451 153.0
DPH3_k127_6953692_24 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.00000000000000000000000000006273 116.0
DPH3_k127_6953692_25 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000000000000000000000002015 108.0
DPH3_k127_6953692_26 PFAM transposase, IS4 family protein K07481 - - 0.0006215 44.0
DPH3_k127_6953692_3 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.0 1003.0
DPH3_k127_6953692_4 modulator of DNA gyrase K03568 - - 9.398e-311 954.0
DPH3_k127_6953692_5 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 5.92e-280 861.0
DPH3_k127_6953692_6 HflC and HflK could encode or regulate a protease K04088 - - 5.637e-240 743.0
DPH3_k127_6953692_7 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 4.961e-223 695.0
DPH3_k127_6953692_8 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 3.496e-213 664.0
DPH3_k127_6953692_9 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 5.95e-213 665.0
DPH3_k127_6988000_0 TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase K16011 - 2.7.7.13,5.3.1.8 9.444e-299 918.0
DPH3_k127_6988000_1 RNase_H superfamily - - - 1.264e-290 894.0
DPH3_k127_6988000_2 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008947 523.0
DPH3_k127_7027541_0 HI0933-like protein K07007 - - 7.406e-232 721.0
DPH3_k127_7027541_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 578.0
DPH3_k127_7027541_2 BON domain K04065 - - 0.00000000000000000000000000000000000000000000000000006358 187.0
DPH3_k127_7027541_3 - - - - 0.0000000000000000000000000000000000000000000000006961 176.0
DPH3_k127_7027541_4 Protein of unknown function (DUF2909) - - - 0.00000000000000000000000004793 108.0
DPH3_k127_7027541_6 DDE superfamily endonuclease - - - 0.0000000000000001651 78.0
DPH3_k127_7027541_7 - - - - 0.0000001897 53.0
DPH3_k127_7027736_0 Aconitase C-terminal domain K01681 - 4.2.1.3 0.0 1746.0
DPH3_k127_7027736_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1352.0
DPH3_k127_7027736_10 TIGRFAM phosphate binding protein K02040 - - 0.0003703 43.0
DPH3_k127_7027736_2 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.0 1239.0
DPH3_k127_7027736_3 Phosphate-selective porin O and P K07221 - - 3.106e-318 979.0
DPH3_k127_7027736_4 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 280.0
DPH3_k127_7027736_5 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000000000000000002501 173.0
DPH3_k127_7027736_6 - - - - 0.000000000000000002635 89.0
DPH3_k127_7027736_7 - - - - 0.00000001195 56.0
DPH3_k127_7027736_8 - - - - 0.000004884 52.0
DPH3_k127_7027736_9 - - - - 0.00001208 48.0
DPH3_k127_7050977_0 Domain of unknown function (DUF3541) - - - 0.00000000000000000000000000000000000000000000000000000000000000395 231.0
DPH3_k127_7050977_1 - - - - 0.00000000000000000000000000000000000000001778 159.0
DPH3_k127_7050977_2 - - - - 0.0000006247 53.0
DPH3_k127_7201382_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 1.406e-254 787.0
DPH3_k127_7201382_1 phosphoribosyltransferase K07100 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009118 294.0
DPH3_k127_7201382_2 Protein of unknown function (DUF423) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004188 241.0
DPH3_k127_7201382_3 - - - - 0.00000000000000000000000000000000006425 138.0
DPH3_k127_7291159_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002553 268.0
DPH3_k127_7291159_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000001432 129.0
DPH3_k127_7291159_2 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000008292 81.0
DPH3_k127_7291159_3 - - - - 0.00000000001094 67.0
DPH3_k127_7309047_0 Metallo-peptidase family M12B Reprolysin-like - - - 1.465e-292 903.0
DPH3_k127_7309047_1 Amino acid permease - - - 1.474e-292 904.0
DPH3_k127_7309047_2 Protein tyrosine kinase K08282 - 2.7.11.1 2.94e-237 743.0
DPH3_k127_7309047_3 TIGRFAM Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.00000000000000000000000000006763 115.0
DPH3_k127_7309047_4 sequence-specific DNA binding - - - 0.0001134 46.0
DPH3_k127_7431472_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.0 1116.0
DPH3_k127_7431472_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 3.311e-265 821.0
DPH3_k127_7431472_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 407.0
DPH3_k127_7431472_3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000000000000008653 189.0
DPH3_k127_7431472_4 - - - - 0.0000000000000000000000000000000000005197 139.0
DPH3_k127_7522891_0 Heat shock 70 kDa protein K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 0.0 1229.0
DPH3_k127_7522891_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 1.685e-240 743.0
DPH3_k127_7522891_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 286.0
DPH3_k127_7645829_0 SMART ATPase, AAA type, core K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 562.0
DPH3_k127_7645829_1 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005594 476.0
DPH3_k127_7645829_2 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009875 340.0
DPH3_k127_7645829_3 Domain of unknown function (DUF1993) K09983 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 333.0
DPH3_k127_7645829_4 Protein of unknown function (DUF3617) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001191 259.0
DPH3_k127_7645829_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000002786 213.0
DPH3_k127_7645829_6 VIT family - - - 0.0000000000000000000000000000000002241 132.0
DPH3_k127_774255_0 PFAM Ketopantoate reductase ApbA PanE, C-terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 596.0
DPH3_k127_774255_1 NAD(P)H-binding K00091 - 1.1.1.219 0.000000000000000005991 84.0
DPH3_k127_7879781_0 PFAM Peptidase M16 K07263 - - 5.625e-283 874.0
DPH3_k127_7879781_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 1.317e-198 621.0
DPH3_k127_7879781_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 521.0
DPH3_k127_7879781_3 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 501.0
DPH3_k127_7879781_4 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 417.0
DPH3_k127_7879781_5 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 379.0
DPH3_k127_7879781_6 EF hand - - - 0.0000000000000000000000000000000000000000000000000000001332 201.0
DPH3_k127_7879781_7 PFAM Peptidase M48 K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000004795 167.0
DPH3_k127_7997209_0 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.0 2908.0
DPH3_k127_7997209_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 6.09e-315 968.0
DPH3_k127_7997209_10 - - - - 0.000000000000000000000000000000000000000000000006263 173.0
DPH3_k127_7997209_11 addiction module antidote protein HigA K21498 - - 0.00000000000000000009182 89.0
DPH3_k127_7997209_2 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 598.0
DPH3_k127_7997209_3 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004858 576.0
DPH3_k127_7997209_4 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 515.0
DPH3_k127_7997209_5 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 334.0
DPH3_k127_7997209_6 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 324.0
DPH3_k127_7997209_7 low molecular weight K01104 GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576 3.1.3.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005209 315.0
DPH3_k127_7997209_8 ErfK YbiS YcfS YnhG family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000008478 234.0
DPH3_k127_7997209_9 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000000000000000000000000000001042 201.0
DPH3_k127_8002331_0 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 0.0 2023.0
DPH3_k127_8002331_1 Orn/Lys/Arg decarboxylase, C-terminal domain K01583 - 4.1.1.19 0.0 1192.0
DPH3_k127_8002331_2 PD-(D/E)XK nuclease superfamily K01144 - 3.1.11.5 9.744e-306 962.0
DPH3_k127_8002331_3 PFAM Peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03767 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007963 522.0
DPH3_k127_8002331_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 357.0
DPH3_k127_8002331_5 PFAM Lytic transglycosylase-like, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 300.0
DPH3_k127_8002331_6 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000000000000000000004296 229.0
DPH3_k127_8037338_0 Fatty acid cis/trans isomerase (CTI) - - - 6.6e-269 848.0
DPH3_k127_8037338_1 FtsX-like permease family K02004 - - 6.778e-208 650.0
DPH3_k127_8037338_10 ubiquitin - - - 0.0000000000000006394 84.0
DPH3_k127_8037338_11 PFAM Transposase, IS4-like K07481 - - 0.00000000000001845 72.0
DPH3_k127_8037338_12 addiction module killer protein - - - 0.00000002786 55.0
DPH3_k127_8037338_13 addiction module killer protein - - - 0.00002656 46.0
DPH3_k127_8037338_14 Biotin-lipoyl like K02005 - - 0.00003538 47.0
DPH3_k127_8037338_15 Peptidase family M28 - - - 0.0007 43.0
DPH3_k127_8037338_2 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 - 6.5.1.4 6.698e-199 622.0
DPH3_k127_8037338_3 Saccharopine dehydrogenase K03340 - 1.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 554.0
DPH3_k127_8037338_4 Fungal family of unknown function (DUF1776) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 527.0
DPH3_k127_8037338_5 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000479 414.0
DPH3_k127_8037338_6 Protein of unknown function (DUF504) - - - 0.000000000000000000000000000000000000000000000000000001567 192.0
DPH3_k127_8037338_7 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000001609 183.0
DPH3_k127_8037338_8 Phosphoesterase family K01114 - 3.1.4.3 0.000000000000000000000000000000000000000000001462 168.0
DPH3_k127_8037338_9 type I site-specific restriction-modification system, R subunit K01153 - 3.1.21.3 0.000000000000000000000000000000000007079 137.0
DPH3_k127_8090470_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0 1319.0
DPH3_k127_8090470_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0 1059.0
DPH3_k127_8090470_2 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006878 259.0
DPH3_k127_8090470_3 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000000000000000003522 134.0
DPH3_k127_8203077_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1840.0
DPH3_k127_8203077_1 malic enzyme K00029 - 1.1.1.40 0.0 1024.0
DPH3_k127_8203077_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 2.132e-307 944.0
DPH3_k127_8203077_3 Cache domain - - - 2.065e-299 924.0
DPH3_k127_8203077_4 TIGRFAM Diguanylate cyclase - - - 3.708e-293 902.0
DPH3_k127_8203077_5 TIGRFAM Phosphoserine phosphatase SerB K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 481.0
DPH3_k127_8203077_6 PFAM SH3, type 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 404.0
DPH3_k127_8203077_7 COG2346, Truncated hemoglobins K06886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000139 269.0
DPH3_k127_8203077_8 DNA polymerase III (Chi subunit) K02339 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000002806 256.0
DPH3_k127_8203077_9 - - - - 0.000000000000000000000000000000000000000000000000005882 183.0
DPH3_k127_8204198_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 0.0 1240.0
DPH3_k127_8204198_1 Mediates influx of magnesium ions K03284 - - 7.576e-224 695.0
DPH3_k127_8204198_2 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 2.304e-217 676.0
DPH3_k127_8204198_3 adenylyltransferase, small subunit K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 604.0
DPH3_k127_8204198_4 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004766 604.0
DPH3_k127_8204198_5 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 573.0
DPH3_k127_8204198_6 Protein of unknown function VcgC/VcgE (DUF2780) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 303.0
DPH3_k127_8204198_7 - - - - 0.000000000000000000000000000000000006016 136.0
DPH3_k127_8204198_8 - - - - 0.0000000000000003992 79.0
DPH3_k127_8204198_9 Cytidylyltransferase-like - - - 0.000003356 49.0
DPH3_k127_8250544_0 MMPL family K07003 - - 0.0 1544.0
DPH3_k127_8250544_1 Selenide, water dikinase K01008 - 2.7.9.3 0.0 1330.0
DPH3_k127_8250544_10 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 404.0
DPH3_k127_8250544_11 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 396.0
DPH3_k127_8250544_12 Papain family cysteine protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 375.0
DPH3_k127_8250544_13 MlaC protein K07323 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 355.0
DPH3_k127_8250544_14 PFAM Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000001608 217.0
DPH3_k127_8250544_15 Peptidoglycan-binding domain 1 protein - - - 0.000000000000000000000000000000000000000000000000000000000003027 212.0
DPH3_k127_8250544_16 Belongs to the DnaA family K10763 - - 0.000000000000000000000000000000000000000004388 154.0
DPH3_k127_8250544_17 Phosphopantetheine attachment site - - - 0.00000000000000000000000000000000000000002357 153.0
DPH3_k127_8250544_18 glycosyl transferase, family 2 - - - 0.00002569 47.0
DPH3_k127_8250544_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 1.31e-295 908.0
DPH3_k127_8250544_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 1.693e-265 819.0
DPH3_k127_8250544_4 AMP-dependent synthetase K00666 - - 3.28e-253 781.0
DPH3_k127_8250544_5 PFAM aminotransferase, class I K00652 - 2.3.1.47 1.381e-250 774.0
DPH3_k127_8250544_6 Domain of unknown function (DUF3463) - - - 2.968e-248 766.0
DPH3_k127_8250544_7 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 1.023e-218 679.0
DPH3_k127_8250544_8 AI-2E family transporter - - - 9.467e-214 665.0
DPH3_k127_8250544_9 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 563.0
DPH3_k127_8266106_0 Type III restriction enzyme, res subunit K01156 - 3.1.21.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 361.0
DPH3_k127_8266106_1 SMART ATPase, AAA type, core K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 292.0
DPH3_k127_8266106_3 Type III restriction enzyme, res subunit K01156 - 3.1.21.5 0.0000001547 60.0
DPH3_k127_8293890_0 alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 5.132e-255 788.0
DPH3_k127_8293890_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 1.204e-201 627.0
DPH3_k127_8293890_2 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 456.0
DPH3_k127_8293890_3 Hep Hag repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 433.0
DPH3_k127_8293890_4 OsmC-like protein K06889,K07397 - - 0.00000000000000000000000000000000000000000000000000000000000000292 217.0
DPH3_k127_8293890_5 Zinc-finger domain - - - 0.000000000000000000000000000000000000001052 148.0
DPH3_k127_8341386_0 Enoyl-CoA hydratase isomerase K19640 - - 0.0 1096.0
DPH3_k127_8341386_1 Hydrogenase formation hypA family K04654 - - 4.924e-243 751.0
DPH3_k127_8341386_2 L,D-transpeptidase catalytic domain K16291 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 608.0
DPH3_k127_8341386_3 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008281 353.0
DPH3_k127_8341386_4 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 327.0
DPH3_k127_8341386_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 281.0
DPH3_k127_8341386_6 Alanine-zipper, major outer membrane lipoprotein K06078 - - 0.00000000000000000000000000000000000000003851 154.0
DPH3_k127_8341386_7 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.000000000000000000000000000000006027 128.0
DPH3_k127_837798_0 Signal transduction histidine kinase, phosphotransfer (Hpt) - - - 0.0 1022.0
DPH3_k127_837798_1 7 transmembrane helices usually fused to an inactive transglutaminase - - - 2.149e-306 942.0
DPH3_k127_837798_10 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000002315 223.0
DPH3_k127_837798_2 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 4.077e-275 849.0
DPH3_k127_837798_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 1.64e-200 628.0
DPH3_k127_837798_4 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 543.0
DPH3_k127_837798_5 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 510.0
DPH3_k127_837798_6 Sugar-transfer associated ATP-grasp - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 497.0
DPH3_k127_837798_7 Putative ATP-dependant zinc protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 455.0
DPH3_k127_837798_8 Universal stress protein K06149 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 291.0
DPH3_k127_837798_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002323 237.0
DPH3_k127_8501481_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1881.0
DPH3_k127_8501481_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0 1382.0
DPH3_k127_8501481_10 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 400.0
DPH3_k127_8501481_11 phosphatase activity K01560,K07025,K20866,K21063 GO:0003674,GO:0003824,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042578,GO:0042726,GO:0042727,GO:0043726,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.1.3.10,3.1.3.104,3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 382.0
DPH3_k127_8501481_12 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 321.0
DPH3_k127_8501481_13 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007107 318.0
DPH3_k127_8501481_14 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 282.0
DPH3_k127_8501481_15 EVE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003289 283.0
DPH3_k127_8501481_16 membrane transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000001201 213.0
DPH3_k127_8501481_17 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000000000000000000000000004403 212.0
DPH3_k127_8501481_18 Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000000000000000000000000000000001058 177.0
DPH3_k127_8501481_19 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000000000000000000000000000000000000002162 174.0
DPH3_k127_8501481_2 PFAM Peptidase M17, leucyl aminopeptidase K01255 - 3.4.11.1 2.022e-302 929.0
DPH3_k127_8501481_3 Lysin motif K08307 - - 5.9e-259 800.0
DPH3_k127_8501481_4 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 3.53e-257 793.0
DPH3_k127_8501481_5 TIGRFAM TIGR03790 family protein - - - 2.401e-241 754.0
DPH3_k127_8501481_6 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 2.043e-237 736.0
DPH3_k127_8501481_7 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 3.558e-222 692.0
DPH3_k127_8501481_8 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005576 526.0
DPH3_k127_8501481_9 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 420.0
DPH3_k127_851744_0 Biotin lipoyl attachment K01941 - 6.3.4.6 0.0 2342.0
DPH3_k127_851744_1 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.0 1814.0
DPH3_k127_851744_10 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 606.0
DPH3_k127_851744_11 PFAM histone deacetylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 595.0
DPH3_k127_851744_12 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 514.0
DPH3_k127_851744_13 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 486.0
DPH3_k127_851744_14 UBA THIF-type NAD FAD binding K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006911 444.0
DPH3_k127_851744_15 Domain of unknown function (DUF1989) K09967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 438.0
DPH3_k127_851744_16 Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family K00569 - 2.1.1.67 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 414.0
DPH3_k127_851744_17 Bacterial regulatory proteins, tetR family K05501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006332 353.0
DPH3_k127_851744_18 PFAM thioesterase superfamily K19222 - 3.1.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 323.0
DPH3_k127_851744_19 Bacterial SH3 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 301.0
DPH3_k127_851744_2 CoA binding domain K09181 - - 0.0 1710.0
DPH3_k127_851744_20 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 282.0
DPH3_k127_851744_21 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001836 273.0
DPH3_k127_851744_22 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003255 269.0
DPH3_k127_851744_23 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000000000000000000000003173 172.0
DPH3_k127_851744_24 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000000000000000004765 161.0
DPH3_k127_851744_26 - - - - 0.0000000001061 62.0
DPH3_k127_851744_27 - - - - 0.000008247 51.0
DPH3_k127_851744_3 extracellular solute-binding protein, family 5 - - - 0.0 1422.0
DPH3_k127_851744_4 Peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 0.0 1138.0
DPH3_k127_851744_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 4.228e-293 902.0
DPH3_k127_851744_6 L-serine dehydratase single chain form K01752 - 4.3.1.17 9.198e-292 897.0
DPH3_k127_851744_7 Protein of unknown function (DUF3422) - - - 1.363e-274 847.0
DPH3_k127_851744_8 Peptidase family M23 - - - 9.237e-226 704.0
DPH3_k127_851744_9 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 3.441e-197 616.0
DPH3_k127_854804_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009408,GO:0009628,GO:0009987,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019058,GO:0019068,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0044183,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0061077,GO:0097159,GO:0097367,GO:0101031,GO:1901265,GO:1901363,GO:1990220 - 1.204e-319 982.0
DPH3_k127_854804_1 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 279.0
DPH3_k127_854804_2 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006628 271.0
DPH3_k127_854804_3 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000601 216.0
DPH3_k127_854804_4 Protein of unknown function (DUF2934) - - - 0.000000000000000000000000000000000000000000000000168 181.0
DPH3_k127_854804_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000000003694 173.0
DPH3_k127_854804_6 - - - - 0.0000000000000000000000000000000000000000006624 159.0
DPH3_k127_854804_7 - - - - 0.00000000000000000000000001936 110.0
DPH3_k127_8642083_0 Insecticidal toxin complex protein TcaC - - - 0.0 1859.0
DPH3_k127_8642083_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00262 - 1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 428.0
DPH3_k127_8731100_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0 1175.0
DPH3_k127_8731100_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 2.056e-271 841.0
DPH3_k127_8731100_2 Carboxysome Shell Carbonic Anhydrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005591 600.0
DPH3_k127_8731100_3 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004724 496.0
DPH3_k127_8731100_4 Phosphorylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007246 355.0
DPH3_k127_8731100_5 Nudix hydrolase K08310 - 3.6.1.67 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002264 272.0
DPH3_k127_8731100_6 Putative regulatory protein - - - 0.000000000000000000000000000000000000000002575 157.0
DPH3_k127_8731100_7 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000001067 141.0
DPH3_k127_8766262_0 Methionine synthase K00548 - 2.1.1.13 0.0 2420.0
DPH3_k127_8766262_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 8.308e-292 897.0
DPH3_k127_8766262_2 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 567.0
DPH3_k127_8766262_3 zinc-ribbon domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 428.0
DPH3_k127_8766262_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006181 287.0
DPH3_k127_8766262_5 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000335 277.0
DPH3_k127_8766262_6 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000001664 80.0
DPH3_k127_8766262_7 - - - - 0.000000000004053 68.0
DPH3_k127_8766262_9 - - - - 0.0005464 46.0
DPH3_k127_8827603_0 helicase superfamily c-terminal domain K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 4.033e-265 819.0
DPH3_k127_8827603_1 Pfam:Methyltransf_26 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 542.0
DPH3_k127_8827603_2 Belongs to the 'phage' integrase family - - - 0.00000000001654 64.0
DPH3_k127_8848793_0 Cobalamin synthesis protein cobW C-terminal domain - - - 7.463e-252 778.0
DPH3_k127_8848793_1 Ammonium transporter K03320,K06580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 439.0
DPH3_k127_8848793_2 Protein of unknown function (DUF1826) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 359.0
DPH3_k127_8848793_3 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 358.0
DPH3_k127_8848793_4 Belongs to the Fur family K09823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007063 295.0
DPH3_k127_8848793_5 HxlR-like helix-turn-helix - - - 0.0008264 43.0
DPH3_k127_8851835_0 DNA mismatch repair protein MutS - - - 0.0 1041.0
DPH3_k127_8851835_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 4.953e-312 957.0
DPH3_k127_8851835_10 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 484.0
DPH3_k127_8851835_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 481.0
DPH3_k127_8851835_12 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 476.0
DPH3_k127_8851835_13 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 454.0
DPH3_k127_8851835_14 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000829 447.0
DPH3_k127_8851835_15 Cytochrome c, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005365 390.0
DPH3_k127_8851835_16 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 382.0
DPH3_k127_8851835_17 PFAM Sporulation domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 358.0
DPH3_k127_8851835_18 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 304.0
DPH3_k127_8851835_19 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000002599 261.0
DPH3_k127_8851835_2 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 1.004e-294 906.0
DPH3_k127_8851835_20 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000001357 259.0
DPH3_k127_8851835_21 ApaG domain K06195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002847 259.0
DPH3_k127_8851835_22 - - - - 0.00000000000000000000000000000000000000000000000000000000000001765 215.0
DPH3_k127_8851835_23 Thiamine monophosphate synthase - - - 0.000000000000000000000000000000000000000000000000000000002473 206.0
DPH3_k127_8851835_24 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.000000000000000000000000000000000000008606 144.0
DPH3_k127_8851835_25 Protein of unknown function (DUF2971) - - - 0.0000000000000000000000000000003237 128.0
DPH3_k127_8851835_26 BrnA antitoxin of type II toxin-antitoxin system - - - 0.000000000001045 68.0
DPH3_k127_8851835_3 intramolecular transferase activity, transferring amino groups K01845 - 5.4.3.8 7.765e-275 846.0
DPH3_k127_8851835_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903,K14067 - 6.2.1.5,6.2.1.9 4.458e-242 751.0
DPH3_k127_8851835_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5,6.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 579.0
DPH3_k127_8851835_6 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 552.0
DPH3_k127_8851835_7 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009877 549.0
DPH3_k127_8851835_8 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003174 547.0
DPH3_k127_8851835_9 restriction endonuclease K07448 GO:0001101,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009295,GO:0009415,GO:0009628,GO:0009987,GO:0010035,GO:0015666,GO:0016787,GO:0016788,GO:0032067,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051599,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901700 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 496.0
DPH3_k127_8932286_0 May be involved in recombinational repair of damaged DNA K03631 - - 1.285e-310 958.0
DPH3_k127_8932286_1 Signal transduction histidine kinase K07637 - 2.7.13.3 1.159e-265 821.0
DPH3_k127_8932286_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 3.375e-232 719.0
DPH3_k127_8932286_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 1.305e-204 638.0
DPH3_k127_8932286_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008153 578.0
DPH3_k127_8932286_5 PFAM Signal transduction response regulator, receiver K07660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 437.0
DPH3_k127_8932286_6 Small metal-binding protein - - - 0.00000000000000000000000000000000000000000000000000000004088 199.0
DPH3_k127_8932286_7 peptidase - - - 0.00000000000000000000000000000000000000000000001131 171.0
DPH3_k127_8932286_8 membrane - - - 0.000000000000000000000000000000000000000000008462 163.0
DPH3_k127_8932286_9 - - - - 0.0000000000000000000000000000000000000000004491 161.0
DPH3_k127_9025222_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 3.888e-195 608.0
DPH3_k127_9025222_1 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 594.0
DPH3_k127_9025222_2 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 520.0
DPH3_k127_9025222_3 Restriction endonuclease K07448 - - 0.00000000000000000000000000292 115.0
DPH3_k127_9059977_0 D-isomer specific 2-hydroxyacid dehydrogenase K03778 - 1.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000587 280.0
DPH3_k127_9059977_1 Domain of unknown function (DUF4156) - - - 0.00000000000000000000000000000000000000000000000009508 179.0
DPH3_k127_9059977_2 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000000000000000000001381 170.0
DPH3_k127_9059977_3 D-isomer specific 2-hydroxyacid dehydrogenase K03778 - 1.1.1.28 0.00000000000000005929 81.0
DPH3_k127_9059977_4 VanZ like family - - - 0.000000000000672 73.0
DPH3_k127_9059977_5 D-isomer specific 2-hydroxyacid dehydrogenase K03778 - 1.1.1.28 0.00000000003529 66.0
DPH3_k127_9163218_0 Binding-protein-dependent transport system inner membrane component K02054,K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004032 565.0
DPH3_k127_9163218_1 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 479.0
DPH3_k127_9163218_2 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000005757 226.0
DPH3_k127_9181936_0 Regulator of K conductance, C-terminal - - - 0.0 1100.0
DPH3_k127_9181936_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.995e-216 673.0
DPH3_k127_9181936_2 Belongs to the RNase T2 family K01166 - 3.1.27.1 2.612e-202 633.0
DPH3_k127_9181936_3 Cytochrome P460 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 415.0
DPH3_k127_9181936_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000000000001858 183.0
DPH3_k127_9194744_0 Cell wall hydrolase autolysin K01448 - 3.5.1.28 5.12e-268 830.0
DPH3_k127_9194744_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 1.077e-256 793.0
DPH3_k127_9194744_10 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 522.0
DPH3_k127_9194744_11 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 463.0
DPH3_k127_9194744_12 Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P) K03414 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 443.0
DPH3_k127_9194744_13 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009429 428.0
DPH3_k127_9194744_14 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 376.0
DPH3_k127_9194744_15 N-acetylmuramoyl-L-alanine amidase (Family 2) K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 370.0
DPH3_k127_9194744_16 AAA domain, putative AbiEii toxin, Type IV TA system K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008948 352.0
DPH3_k127_9194744_17 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008258 334.0
DPH3_k127_9194744_18 ABC-type transport auxiliary lipoprotein component K18480 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 335.0
DPH3_k127_9194744_19 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 300.0
DPH3_k127_9194744_2 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 3.52e-248 767.0
DPH3_k127_9194744_20 Response regulator receiver K03413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000045 252.0
DPH3_k127_9194744_21 DNA-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000004673 239.0
DPH3_k127_9194744_22 BrnA antitoxin of type II toxin-antitoxin system - - - 0.000000000000000000000000000000000000000000000000296 181.0
DPH3_k127_9194744_23 PFAM Major facilitator superfamily K08218 - - 0.000000000000000000000000000000000000000000001365 166.0
DPH3_k127_9194744_24 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000000000000000000000001753 164.0
DPH3_k127_9194744_25 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.0000000000000006559 81.0
DPH3_k127_9194744_26 small periplasmic lipoprotein - - - 0.000000000001682 68.0
DPH3_k127_9194744_27 PFAM Integrase, catalytic core K07497 - - 0.0000171 48.0
DPH3_k127_9194744_3 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 2.171e-240 744.0
DPH3_k127_9194744_4 PFAM Squalene phytoene synthase K00801 - 2.5.1.21 2.446e-218 679.0
DPH3_k127_9194744_5 Permease MlaE K02066 - - 7.011e-217 676.0
DPH3_k127_9194744_6 TIGRFAM DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 1.274e-211 659.0
DPH3_k127_9194744_7 NmrA-like family K00091 - 1.1.1.219 7.518e-204 636.0
DPH3_k127_9194744_8 Belongs to the glucose-6-phosphate 1-epimerase family K01792 - 5.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000428 588.0
DPH3_k127_9194744_9 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 547.0
DPH3_k127_9261579_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0 1349.0
DPH3_k127_9261579_1 Signal transduction histidine kinase - - - 0.0 1329.0
DPH3_k127_9261579_10 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 598.0
DPH3_k127_9261579_11 Inositol monophosphatase K01082,K01092 - 3.1.3.25,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009173 535.0
DPH3_k127_9261579_12 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 473.0
DPH3_k127_9261579_13 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005836 388.0
DPH3_k127_9261579_14 Domain of unknown function (DUF4390) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 357.0
DPH3_k127_9261579_15 Response regulator receiver K02657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004685 242.0
DPH3_k127_9261579_16 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.000000000000000000000000000000000000000000000000000003599 190.0
DPH3_k127_9261579_17 excinuclease ABC activity K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000341 162.0
DPH3_k127_9261579_18 Domain of unknown function (DUF4357) - - - 0.0000000000000000002014 91.0
DPH3_k127_9261579_19 Domain of unknown function (DUF4357) - - - 0.00000000000000017 80.0
DPH3_k127_9261579_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 4.995e-303 930.0
DPH3_k127_9261579_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.088e-301 926.0
DPH3_k127_9261579_4 TrkA-N domain protein K03499 - - 1.266e-284 877.0
DPH3_k127_9261579_5 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 3.703e-277 854.0
DPH3_k127_9261579_6 Sigma-54 interaction domain - - - 6.48e-261 805.0
DPH3_k127_9261579_7 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 1.293e-246 763.0
DPH3_k127_9261579_8 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 2.069e-229 710.0
DPH3_k127_9261579_9 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 1.543e-215 670.0
DPH3_k127_9297552_0 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.0 1260.0
DPH3_k127_9297552_1 Formate acetyltransferase K00656 - 2.3.1.54 0.0 1216.0
DPH3_k127_9297552_10 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 312.0
DPH3_k127_9297552_11 Ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007459 285.0
DPH3_k127_9297552_12 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004337 277.0
DPH3_k127_9297552_2 SMART ATPase, AAA type, core K06148 - - 0.0 1033.0
DPH3_k127_9297552_3 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 8.126e-249 770.0
DPH3_k127_9297552_5 PFAM Peptidase S8 S53, subtilisin kexin sedolisin - - - 1.493e-247 766.0
DPH3_k127_9297552_6 Belongs to the arginase family K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000644 600.0
DPH3_k127_9297552_7 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 513.0
DPH3_k127_9297552_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 451.0
DPH3_k127_9297552_9 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002253 322.0
DPH3_k127_9348239_0 Glutaminyl-tRNA synthetase K01886 - 6.1.1.18 0.0 1193.0
DPH3_k127_9348239_1 PFAM peptidase - - - 3.85e-283 871.0
DPH3_k127_9348239_10 Required for insertion of 4Fe-4S clusters K15724 - - 0.00000000000000000000000000000000000000000000000000000000000000001286 225.0
DPH3_k127_9348239_11 Domain of unknown function (DUF5062) - - - 0.00000000000000000000000000000000000000000000003547 170.0
DPH3_k127_9348239_12 Methyltransferase domain - - - 0.000000000000000000000000000001048 124.0
DPH3_k127_9348239_13 Nucleotidyltransferase domain - - - 0.0000000000000000000005793 100.0
DPH3_k127_9348239_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 1.65e-219 683.0
DPH3_k127_9348239_3 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 7.964e-213 663.0
DPH3_k127_9348239_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 447.0
DPH3_k127_9348239_5 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 336.0
DPH3_k127_9348239_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006397 299.0
DPH3_k127_9348239_7 Protein of unknown function DUF86 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003206 265.0
DPH3_k127_9348239_8 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009621 255.0
DPH3_k127_9348239_9 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003402 247.0
DPH3_k127_9378905_0 metallopeptidase activity - - - 1.899e-283 874.0
DPH3_k127_9378905_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 477.0
DPH3_k127_9378905_2 4Fe-4S single cluster domain K18006 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 456.0
DPH3_k127_9378905_3 Thrombospondin C-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 437.0
DPH3_k127_9378905_4 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K18005 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004834 348.0
DPH3_k127_9378905_5 Transposase IS200 like - - - 0.00000000000000000000000000000000000000004838 151.0
DPH3_k127_9378905_6 PFAM NADH ubiquinone K18007 - 1.12.1.2 0.000000000004622 69.0
DPH3_k127_9378905_8 Transposase IS200 like - - - 0.00000000003128 64.0
DPH3_k127_9378905_9 Transposase IS200 like - - - 0.00009733 46.0
DPH3_k127_9389751_0 PFAM Copper resistance D K07245 - - 1.632e-280 864.0
DPH3_k127_9389751_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000004941 243.0
DPH3_k127_9389751_2 PFAM Copper resistance protein CopC K07156 - - 0.000000000000000000000000000000000000000000000000000000000000000000001179 237.0
DPH3_k127_939491_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.0 1065.0
DPH3_k127_939491_1 BT1 family - - - 0.0 1033.0
DPH3_k127_939491_10 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 1.592e-205 641.0
DPH3_k127_939491_11 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 576.0
DPH3_k127_939491_12 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 575.0
DPH3_k127_939491_13 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 574.0
DPH3_k127_939491_14 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 GO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009507,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019953,GO:0022414,GO:0030154,GO:0030170,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0036094,GO:0040007,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0048037,GO:0048046,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050662,GO:0050896,GO:0051704,GO:0060560,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 571.0
DPH3_k127_939491_15 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008564 553.0
DPH3_k127_939491_16 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 542.0
DPH3_k127_939491_17 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005205 541.0
DPH3_k127_939491_18 Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 523.0
DPH3_k127_939491_19 TolA C-terminal K03646 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 524.0
DPH3_k127_939491_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.606e-320 983.0
DPH3_k127_939491_20 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 489.0
DPH3_k127_939491_21 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 473.0
DPH3_k127_939491_22 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 457.0
DPH3_k127_939491_23 MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 430.0
DPH3_k127_939491_24 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 429.0
DPH3_k127_939491_25 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 413.0
DPH3_k127_939491_26 Belongs to the BI1 family K19416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 399.0
DPH3_k127_939491_27 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 400.0
DPH3_k127_939491_28 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009964 373.0
DPH3_k127_939491_29 Cytochrome P460 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 353.0
DPH3_k127_939491_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 6.685e-293 900.0
DPH3_k127_939491_30 transport-associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 345.0
DPH3_k127_939491_31 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 343.0
DPH3_k127_939491_32 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 322.0
DPH3_k127_939491_33 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 321.0
DPH3_k127_939491_34 Two component signalling adaptor domain K02659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005118 318.0
DPH3_k127_939491_35 PFAM Cytochrome c oxidase assembly protein CtaG Cox11 K02258 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006904 316.0
DPH3_k127_939491_36 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 305.0
DPH3_k127_939491_37 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008703 286.0
DPH3_k127_939491_38 MltA specific insert domain K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006823 273.0
DPH3_k127_939491_39 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001523 273.0
DPH3_k127_939491_4 FAD linked oxidases, C-terminal domain K00102,K03777 - 1.1.2.4,1.1.5.12 5.158e-277 854.0
DPH3_k127_939491_40 signal sequence binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003344 268.0
DPH3_k127_939491_41 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002892 260.0
DPH3_k127_939491_42 4-hydroxybenzoyl-CoA thioesterase K07107 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005886 259.0
DPH3_k127_939491_43 Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009835 246.0
DPH3_k127_939491_44 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000000000000000000000000000000000000000000000000000000000000261 212.0
DPH3_k127_939491_45 ATP synthase I chain K02116 - - 0.0000000000000000000000000000000000000000000000000000000000004544 212.0
DPH3_k127_939491_46 - - - - 0.0000000000000000000000000000000000000000000000000000000000107 208.0
DPH3_k127_939491_47 Aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000000000000000000000000002282 207.0
DPH3_k127_939491_48 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000000000000000005192 172.0
DPH3_k127_939491_49 Competence protein ComEA K02237 - - 0.0000000000000000000000000000000000001568 143.0
DPH3_k127_939491_5 Involved in the TonB-independent uptake of proteins K03641 - - 2.852e-273 842.0
DPH3_k127_939491_50 Protein of unknown function (DUF3460) - - - 0.00000000000000000000000000002424 117.0
DPH3_k127_939491_51 - - - - 0.0000000000000000000000005489 105.0
DPH3_k127_939491_52 Protein of unknown function (DUF2970) - - - 0.0000000000000000000003886 96.0
DPH3_k127_939491_53 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.00000000000005954 71.0
DPH3_k127_939491_54 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000548 68.0
DPH3_k127_939491_55 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000118 62.0
DPH3_k127_939491_57 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000007365 52.0
DPH3_k127_939491_6 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 4.466e-259 803.0
DPH3_k127_939491_7 Belongs to the thiolase family K00626 - 2.3.1.9 1.542e-239 743.0
DPH3_k127_939491_8 Belongs to the peptidase S1C family K04691,K04772 - - 8.154e-226 702.0
DPH3_k127_939491_9 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 7.036e-212 659.0
DPH3_k127_9432226_0 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0 1889.0
DPH3_k127_9432226_1 Belongs to the peptidase S16 family - - - 0.0 1508.0
DPH3_k127_9432226_10 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002348 268.0
DPH3_k127_9432226_11 Universal stress protein family - - - 0.00000000000000000000000000000000006673 139.0
DPH3_k127_9432226_2 PFAM Multicopper oxidase, type - - - 0.0 1112.0
DPH3_k127_9432226_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.0 1071.0
DPH3_k127_9432226_4 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor - - - 4.085e-247 766.0
DPH3_k127_9432226_5 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 1.418e-231 717.0
DPH3_k127_9432226_6 Sulfate permease family - - - 6.003e-209 659.0
DPH3_k127_9432226_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K18094 - - 4.296e-206 647.0
DPH3_k127_9432226_8 PFAM multicopper oxidase type 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 597.0
DPH3_k127_9432226_9 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 505.0
DPH3_k127_9502468_0 OsmC-like protein K06889,K07397 - - 2.55e-217 676.0
DPH3_k127_9502468_1 PFAM Class II aldolase adducin K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 514.0
DPH3_k127_9502468_2 PFAM RNA-binding S4 K04762 - - 0.000000000000000000000000000000000000000000000000000000000000000000006187 235.0
DPH3_k127_9524098_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004521 415.0
DPH3_k127_954028_0 amine dehydrogenase activity - - - 0.0 1213.0
DPH3_k127_954028_1 Bacterial protein of unknown function (Gcw_chp) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 502.0
DPH3_k127_954028_2 PFAM RNA polymerase sigma factor 70, region 4 type 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006836 391.0
DPH3_k127_954028_3 - - - - 0.00000000000000000000000000000000000000000000000000003207 190.0
DPH3_k127_954028_4 Putative zinc-finger - - - 0.00000000000000000000000000000000000000000000001977 171.0
DPH3_k127_954028_5 - - - - 0.000000000000000000000000000000000003927 141.0
DPH3_k127_954028_7 PFAM transposase, mutator type - - - 0.0000272 47.0
DPH3_k127_9608114_0 PFAM Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase K13924 - 2.1.1.80,3.1.1.61 0.0 1428.0
DPH3_k127_9608114_1 Competence protein ComEC Rec2 K02238 - - 0.0 1420.0
DPH3_k127_9751576_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 0.0 1256.0
DPH3_k127_9751576_1 Sulfatase K01130 - 3.1.6.1 0.0 1225.0
DPH3_k127_9751576_10 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 1.915e-205 641.0
DPH3_k127_9751576_11 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 601.0
DPH3_k127_9751576_12 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 567.0
DPH3_k127_9751576_13 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 554.0
DPH3_k127_9751576_14 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 505.0
DPH3_k127_9751576_15 Branched-chain amino acid ATP-binding cassette transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 460.0
DPH3_k127_9751576_16 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 397.0
DPH3_k127_9751576_17 protein conserved in bacteria K03690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 363.0
DPH3_k127_9751576_18 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 346.0
DPH3_k127_9751576_19 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 343.0
DPH3_k127_9751576_2 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.0 996.0
DPH3_k127_9751576_20 PTS IIA-like nitrogen-regulatory protein PtsN K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001702 245.0
DPH3_k127_9751576_21 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000000001446 214.0
DPH3_k127_9751576_22 Sigma 54 modulation protein K05808 - - 0.00000000000000000000000000000000000000000000000000000000008136 207.0
DPH3_k127_9751576_23 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000007061 201.0
DPH3_k127_9751576_24 shape-determining protein MreD K03571 - - 0.0000000000000000000000000000000000000000000000000000008162 197.0
DPH3_k127_9751576_25 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000002565 173.0
DPH3_k127_9751576_26 - - - - 0.00000000000000000000000000000000000002637 150.0
DPH3_k127_9751576_28 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.000006558 49.0
DPH3_k127_9751576_29 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.00001655 49.0
DPH3_k127_9751576_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 5.73e-308 945.0
DPH3_k127_9751576_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 4.628e-301 927.0
DPH3_k127_9751576_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 4.918e-284 876.0
DPH3_k127_9751576_6 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 2.828e-243 753.0
DPH3_k127_9751576_7 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 8.984e-235 727.0
DPH3_k127_9751576_8 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 1.073e-219 684.0
DPH3_k127_9751576_9 cell shape determining protein, MreB Mrl K03569 - - 1.6e-219 683.0
DPH3_k127_9826216_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903,K14067 - 6.2.1.5,6.2.1.9 4.559e-246 762.0
DPH3_k127_9826216_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 - 6.2.1.5,6.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 580.0
DPH3_k127_9826216_2 Belongs to the HpcH HpaI aldolase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 385.0
DPH3_k127_9826216_3 Belongs to the HpcH HpaI aldolase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000152 239.0
DPH3_k127_9826216_4 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000002305 153.0
DPH3_k127_9849414_0 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor - - - 0.0 1172.0
DPH3_k127_9849414_1 SMART Signal transduction response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 382.0
DPH3_k127_9849414_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 376.0
DPH3_k127_9849414_3 Putative motility protein - - - 0.000000000000000000000000000003225 122.0
DPH3_k127_9849414_4 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.0000000000000000007393 86.0
DPH3_k127_9855697_0 von Willebrand factor, type A K02448 - - 0.0 1215.0
DPH3_k127_9855697_1 Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 1.277e-290 893.0
DPH3_k127_9855697_10 Cytochrome c K02305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 309.0
DPH3_k127_9855697_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 290.0
DPH3_k127_9855697_12 Phosphate-selective porin O and P K07221 - - 0.000000000000000000000000000000000000000004176 154.0
DPH3_k127_9855697_13 - - - - 0.0000000000000000000000000000000000365 136.0
DPH3_k127_9855697_14 - - - - 0.00000000000000000000000000000002356 127.0
DPH3_k127_9855697_15 - - - - 0.0000000000000000000000001738 106.0
DPH3_k127_9855697_16 Phosphate-selective porin O and P K07221 - - 0.00000000000000000000009719 97.0
DPH3_k127_9855697_2 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 1.555e-273 844.0
DPH3_k127_9855697_3 SMART Diguanylate phosphodiesterase - - - 1.335e-271 846.0
DPH3_k127_9855697_4 MacB-like periplasmic core domain K02004 - - 7.084e-234 726.0
DPH3_k127_9855697_5 MacB-like periplasmic core domain K02004 - - 2.077e-233 724.0
DPH3_k127_9855697_6 PFAM Endonuclease exonuclease phosphatase K06896 - 3.1.3.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 578.0
DPH3_k127_9855697_7 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 535.0
DPH3_k127_9855697_8 pfam abc K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 354.0
DPH3_k127_9855697_9 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 346.0
DPH3_k127_9870366_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1967.0
DPH3_k127_9870366_1 PFAM Glycosyl transferase, family 2 K00721,K00786 - 2.4.1.83 0.0 1632.0
DPH3_k127_9870366_10 outer membrane efflux protein K15725 - - 1.383e-236 740.0
DPH3_k127_9870366_11 Ankyrin repeat K06867 - - 2.288e-224 698.0
DPH3_k127_9870366_12 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 1.43e-214 668.0
DPH3_k127_9870366_13 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 1.181e-212 670.0
DPH3_k127_9870366_14 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 2.484e-204 636.0
DPH3_k127_9870366_15 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 1.386e-197 617.0
DPH3_k127_9870366_16 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 1.671e-195 612.0
DPH3_k127_9870366_17 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 583.0
DPH3_k127_9870366_18 malonyl CoA-acyl carrier protein transacylase K00645,K13935,K15355 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005237 554.0
DPH3_k127_9870366_19 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 489.0
DPH3_k127_9870366_2 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K12297 - 2.1.1.173,2.1.1.264 0.0 1418.0
DPH3_k127_9870366_20 PFAM Zinc iron permease K16267 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 484.0
DPH3_k127_9870366_21 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 475.0
DPH3_k127_9870366_22 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 463.0
DPH3_k127_9870366_23 glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 464.0
DPH3_k127_9870366_24 Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739 454.0
DPH3_k127_9870366_25 Protoglobin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 411.0
DPH3_k127_9870366_26 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009526 367.0
DPH3_k127_9870366_27 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 358.0
DPH3_k127_9870366_28 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003882 357.0
DPH3_k127_9870366_29 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 355.0
DPH3_k127_9870366_3 Polysaccharide biosynthesis protein - - - 0.0 1148.0
DPH3_k127_9870366_30 WYL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003778 354.0
DPH3_k127_9870366_31 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 322.0
DPH3_k127_9870366_32 Zeta toxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007409 282.0
DPH3_k127_9870366_33 Protein of unknown function (DUF4019) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006015 250.0
DPH3_k127_9870366_34 - K07039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002214 267.0
DPH3_k127_9870366_35 - - - - 0.0000000000000000000000000000000000000000000000000000000000009099 211.0
DPH3_k127_9870366_36 Glycosyl transferase family 4 K13007 - - 0.000000000000000000000000000000000000000000000000000000004079 199.0
DPH3_k127_9870366_37 ParD-like antitoxin of type II bacterial toxin-antitoxin system - - - 0.000000000000000000000000000000000000000002082 159.0
DPH3_k127_9870366_38 DNA-binding protein VF530 - - - 0.00000000000000000000000000000000000000007411 156.0
DPH3_k127_9870366_39 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000000003621 146.0
DPH3_k127_9870366_4 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 1.655e-321 987.0
DPH3_k127_9870366_40 RNA-binding K14761 - - 0.0000000000000000000000000000000000007623 139.0
DPH3_k127_9870366_41 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000000000000001548 129.0
DPH3_k127_9870366_42 HIRAN - - - 0.0000000000000000000000000000001871 128.0
DPH3_k127_9870366_43 Metal dependent phosphohydrolases with conserved 'HD' motif. K07012 - - 0.000000000000000000000000013 115.0
DPH3_k127_9870366_44 Protein of unknown function (DUF433) - - - 0.0000000000000000000141 94.0
DPH3_k127_9870366_5 Belongs to the DEAD box helicase family - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 3.719e-287 883.0
DPH3_k127_9870366_6 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 4.704e-284 874.0
DPH3_k127_9870366_7 ABC transporter K02021,K11085 - - 6.874e-280 869.0
DPH3_k127_9870366_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 2.609e-263 816.0
DPH3_k127_9870366_9 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 1.217e-260 804.0
DPH3_k127_9879109_0 PFAM Transposase, IS4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006586 320.0
DPH3_k127_9879109_1 DDE domain K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004323 311.0
DPH3_k127_9879109_2 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000000000000000000000000000000000000000000000006102 232.0
DPH3_k127_9879109_3 Protein of unknown function (DUF1566) - - - 0.00000000000000000000000000000000003014 148.0
DPH3_k127_9879109_4 Helix-turn-helix domain - - - 0.0000000000000000000000000002777 115.0
DPH3_k127_9884694_0 Threonine synthase K01733 - 4.2.3.1 1.323e-290 894.0
DPH3_k127_9884694_1 homoserine dehydrogenase K00003 - 1.1.1.3 3.637e-259 801.0
DPH3_k127_9884694_2 PFAM aminotransferase, class I K14260 - 2.6.1.2,2.6.1.66 7.339e-250 771.0
DPH3_k127_9884694_3 endonuclease activity - - - 0.000000000000000000000000000000000003837 137.0
DPH3_k127_9924413_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0 1285.0
DPH3_k127_9924413_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.0 1119.0
DPH3_k127_9924413_10 Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway K03181 - 4.1.3.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006333 356.0
DPH3_k127_9924413_11 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000000000000000000000000000000002967 245.0
DPH3_k127_9924413_12 Putative member of DMT superfamily (DUF486) K09922 - - 0.000000000000000000000000000000000000000000004835 164.0
DPH3_k127_9924413_13 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000007981 136.0
DPH3_k127_9924413_14 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.00000000000000000000000000000002856 127.0
DPH3_k127_9924413_2 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 0.0 994.0
DPH3_k127_9924413_3 argininosuccinate lyase K01755 - 4.3.2.1 5.992e-298 919.0
DPH3_k127_9924413_4 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 1.343e-265 819.0
DPH3_k127_9924413_5 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 1.235e-250 775.0
DPH3_k127_9924413_6 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 574.0
DPH3_k127_9924413_7 Fructosamine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 542.0
DPH3_k127_9924413_8 membrane K08994 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004325 497.0
DPH3_k127_9924413_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004989 365.0