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Overview

ID MAG00903
Name DYD2_bin.2
Sample SMP0026
Taxonomy
Kingdom Bacteria
Phylum Patescibacteriota
Class Saccharimonadia
Order Saccharimonadales
Family UBA5946
Genus
Species
Assembly information
Completeness (%) 97.28
Contamination (%) 0.24
GC content (%) 50.0
N50 (bp) 193,529
Genome size (bp) 985,021

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes816

Gene name Description KEGG GOs EC E-value Score Sequence
DYD2_k127_1113079_0 transposase activity - - - 0.0000000000000000000000000000000000000000000001959 183.0
DYD2_k127_115570_0 IstB-like ATP binding protein - - - 0.0000000000000000000000000000000000007087 149.0
DYD2_k127_115570_1 spectrin binding - - - 0.00000000000000000000000000000000000125 148.0
DYD2_k127_115570_2 Transposase and inactivated derivatives - - - 0.000000000000000000003551 100.0
DYD2_k127_1188500_0 Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003561 353.0
DYD2_k127_129259_0 COG3328 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 508.0
DYD2_k127_1359910_0 DNA polymerase III K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005201 552.0
DYD2_k127_1359910_1 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004877 327.0
DYD2_k127_1359910_2 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002108 269.0
DYD2_k127_1359910_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000188 163.0
DYD2_k127_1359910_4 Super-infection exclusion protein B - - - 0.000000007884 65.0
DYD2_k127_1364863_0 PFAM IstB domain protein ATP-binding protein - - - 0.00000000000000000000000000000000000000000000000001061 189.0
DYD2_k127_1364863_1 COG4584 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000001062 181.0
DYD2_k127_1364863_2 Transposase K07491 - - 0.0000000000000000000009324 97.0
DYD2_k127_1364863_3 Transposase K07491 - - 0.0000000007086 61.0
DYD2_k127_1364863_4 ATP binding K06926 - - 0.000004673 49.0
DYD2_k127_1394993_0 IMG reference gene - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000736 510.0
DYD2_k127_1408756_0 NAD dependent epimerase/dehydratase family K19180 - 1.1.1.339 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 353.0
DYD2_k127_1408756_1 cephalosporin hydroxylase - GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009273,GO:0009987,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0030166,GO:0030203,GO:0030204,GO:0030206,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044464,GO:0050650,GO:0050654,GO:0071554,GO:0071704,GO:0071766,GO:0071770,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510 - 0.00000000000000000000000000000000000000000000000000000000000000000000002014 244.0
DYD2_k127_1469708_0 COG3385 FOG Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 588.0
DYD2_k127_1469708_1 Pfam:Transaldolase K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003808 283.0
DYD2_k127_1469708_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000001556 229.0
DYD2_k127_1469708_3 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000601 43.0
DYD2_k127_1516853_0 transposition, DNA-mediated - - - 0.00000000000000000000000000000009662 130.0
DYD2_k127_1516853_1 ISXO2-like transposase domain - - - 0.0000000000000000000000001846 112.0
DYD2_k127_1516853_2 Large extracellular alpha-helical protein K06894 - - 0.0000000000000000000218 96.0
DYD2_k127_1516853_3 Pfam:N_methyl_2 - - - 0.000002079 55.0
DYD2_k127_1520654_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 549.0
DYD2_k127_1520654_1 ABC-type Fe3 transport system permease component K02011 - - 0.000000000000000000000002052 112.0
DYD2_k127_1520654_2 iron ion homeostasis K02012 - - 0.00000000007549 74.0
DYD2_k127_1557931_0 Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009367 373.0
DYD2_k127_1648047_0 COG NOG14600 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000001443 161.0
DYD2_k127_1648047_1 COG NOG15344 non supervised orthologous group - - - 0.0000000000000000000004974 95.0
DYD2_k127_1648047_2 COG NOG15344 non supervised orthologous group - - - 0.000000000000000000009368 94.0
DYD2_k127_1648047_3 - - - - 0.0000000000002309 71.0
DYD2_k127_1648047_4 the current gene model (or a revised gene model) may contain one or more premature stops and or frameshifts - - - 0.000000000004861 68.0
DYD2_k127_1648047_5 - - - - 0.0000000000856 62.0
DYD2_k127_1648047_6 - - - - 0.000000005044 58.0
DYD2_k127_1648047_7 - - - - 0.000001963 51.0
DYD2_k127_1648047_8 ORF located using Blastx - - - 0.0008741 42.0
DYD2_k127_1678672_0 Transcriptional regulator, TrmB - - - 0.0000000000000001375 89.0
DYD2_k127_1678672_1 Transcriptional regulator, TrmB - - - 0.0000000000000006216 86.0
DYD2_k127_1769941_0 DDE superfamily endonuclease - - - 0.000000000000000000000000007291 110.0
DYD2_k127_1769941_1 Glyoxalase-like domain - - - 0.000000000000000000000001212 106.0
DYD2_k127_1774862_0 COGs COG3328 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 418.0
DYD2_k127_1774862_1 Integrase core domain - - - 0.0000000002762 61.0
DYD2_k127_1774862_2 Domain of unknown function (DUF4372) - - - 0.000004035 51.0
DYD2_k127_1821681_0 - - - - 0.00000000000000000000000000000513 119.0
DYD2_k127_1821681_2 ORF located using Blastx - - - 0.00000000003941 67.0
DYD2_k127_1932397_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 522.0
DYD2_k127_1932397_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 411.0
DYD2_k127_1932397_10 PFAM Mannose-6-phosphate isomerase - - - 0.000000000000000000000000000000000000000000000000005368 186.0
DYD2_k127_1932397_11 Methyltransferase FkbM domain - - - 0.00000000000000000000000000000000000000000000009093 180.0
DYD2_k127_1932397_12 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000003125 172.0
DYD2_k127_1932397_13 PFAM glycosyl transferase group 1 K12993 - - 0.000000000000000000000000000000007214 142.0
DYD2_k127_1932397_14 Hydrolase, NUDIX family K01515 - 3.6.1.13 0.000000000000000000000000003849 117.0
DYD2_k127_1932397_15 protein secretion by the type IV secretion system K03201 - - 0.00000000000000000000000000954 128.0
DYD2_k127_1932397_16 Peptidase inhibitor family I36 - - - 0.0000000000000000000005739 109.0
DYD2_k127_1932397_17 Bulb-type mannose-specific lectin - - - 0.000000000000000000005762 108.0
DYD2_k127_1932397_18 Putative single-stranded nucleic acids-binding domain K06346 - - 0.0000000000000000002261 96.0
DYD2_k127_1932397_19 Psort location CytoplasmicMembrane, score K03217 - - 0.0000000000000000357 92.0
DYD2_k127_1932397_2 Type IV secretory pathway, VirB4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 404.0
DYD2_k127_1932397_20 NUDIX hydrolase - - - 0.000000000000001048 83.0
DYD2_k127_1932397_21 - - - - 0.000000000000002865 86.0
DYD2_k127_1932397_22 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000526 64.0
DYD2_k127_1932397_23 Peptidase family M23 - - - 0.000006152 58.0
DYD2_k127_1932397_24 PrgI family protein - - - 0.00001384 56.0
DYD2_k127_1932397_25 Endonuclease/Exonuclease/phosphatase family - - - 0.00003521 58.0
DYD2_k127_1932397_26 - - - - 0.00012 49.0
DYD2_k127_1932397_27 - - - - 0.0002089 49.0
DYD2_k127_1932397_28 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000776 48.0
DYD2_k127_1932397_3 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006736 322.0
DYD2_k127_1932397_4 hydrolase, family 25 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005809 274.0
DYD2_k127_1932397_5 GDP-mannose 4,6 dehydratase K15856 - 1.1.1.281 0.0000000000000000000000000000000000000000000000000000000000000000000000007947 257.0
DYD2_k127_1932397_6 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000001 248.0
DYD2_k127_1932397_7 Transport permease protein K09690 - - 0.000000000000000000000000000000000000000000000000000000000000000006451 241.0
DYD2_k127_1932397_8 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000001062 212.0
DYD2_k127_1932397_9 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0000000000000000000000000000000000000000000000000002901 198.0
DYD2_k127_1963968_0 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 325.0
DYD2_k127_1963968_1 PFAM transposase, IS4 family protein - - - 0.00000000000000000000000000000001371 134.0
DYD2_k127_1963968_2 Reverse transcriptase (RNA-dependent DNA polymerase) K00986 - 2.7.7.49 0.00000003625 54.0
DYD2_k127_1989349_0 COG NOG14600 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008564 264.0
DYD2_k127_1989349_1 - - - - 0.00000000000000000000000000000000000000000000000000000003356 198.0
DYD2_k127_1989349_10 - - - - 0.0000000009311 59.0
DYD2_k127_1989349_11 - - - - 0.00000009246 55.0
DYD2_k127_1989349_2 COG NOG15344 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000000009223 169.0
DYD2_k127_1989349_3 - - - - 0.0000000000000000000000000000001016 124.0
DYD2_k127_1989349_4 - - - - 0.000000000000000000000004241 109.0
DYD2_k127_1989349_5 - - - - 0.000000000000000000000008971 100.0
DYD2_k127_1989349_6 - - - - 0.000000000000004141 81.0
DYD2_k127_1989349_7 Glycosyl transferase, family 2 - - - 0.0000000000003313 75.0
DYD2_k127_1989349_8 - - - - 0.000000000000342 71.0
DYD2_k127_1989349_9 ORF located using Blastx - - - 0.000000000004243 68.0
DYD2_k127_2025487_0 Transposase IS66 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007184 337.0
DYD2_k127_2154010_0 PFAM Transposase K07481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001094 291.0
DYD2_k127_2154010_1 - - - - 0.0000000000000000000174 93.0
DYD2_k127_2157713_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1177.0
DYD2_k127_2157713_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1167.0
DYD2_k127_2157713_10 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 - 2.5.1.7 2.678e-223 702.0
DYD2_k127_2157713_100 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006214 251.0
DYD2_k127_2157713_101 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002572 247.0
DYD2_k127_2157713_102 Excalibur calcium-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002711 248.0
DYD2_k127_2157713_103 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000009532 250.0
DYD2_k127_2157713_104 PFAM HhH-GPD superfamily base excision DNA repair protein K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001938 248.0
DYD2_k127_2157713_105 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002049 261.0
DYD2_k127_2157713_106 Nucleotidyl transferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000216 246.0
DYD2_k127_2157713_107 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000486 243.0
DYD2_k127_2157713_108 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000008321 238.0
DYD2_k127_2157713_109 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000000000000000000000000001031 242.0
DYD2_k127_2157713_11 aminopeptidase K01256 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.4.11.2 2.149e-220 711.0
DYD2_k127_2157713_110 cytochrome o ubiquinol oxidase (Subunit III) K02299 - - 0.0000000000000000000000000000000000000000000000000000000000000000002592 234.0
DYD2_k127_2157713_111 Membrane-associated protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000003802 237.0
DYD2_k127_2157713_112 glycoside hydrolase family 37 - - - 0.0000000000000000000000000000000000000000000000000000000000000000004365 244.0
DYD2_k127_2157713_113 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000002486 230.0
DYD2_k127_2157713_114 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000001731 234.0
DYD2_k127_2157713_115 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000009761 227.0
DYD2_k127_2157713_116 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000001285 228.0
DYD2_k127_2157713_117 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000005009 222.0
DYD2_k127_2157713_118 Cytidylyltransferase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000569 222.0
DYD2_k127_2157713_119 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000009564 224.0
DYD2_k127_2157713_12 elongation factor Tu domain 2 protein K06207 - - 3.173e-205 655.0
DYD2_k127_2157713_120 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000002066 228.0
DYD2_k127_2157713_121 MafB19-like deaminase - - - 0.0000000000000000000000000000000000000000000000000000000000002154 222.0
DYD2_k127_2157713_122 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000000000000000000000000000000001669 211.0
DYD2_k127_2157713_123 aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000208 224.0
DYD2_k127_2157713_124 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000003292 213.0
DYD2_k127_2157713_125 Domain of unknown function (DUF4396) - - - 0.000000000000000000000000000000000000000000000000000000000006547 214.0
DYD2_k127_2157713_126 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000004576 206.0
DYD2_k127_2157713_127 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000203 204.0
DYD2_k127_2157713_128 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000006789 205.0
DYD2_k127_2157713_129 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000002582 196.0
DYD2_k127_2157713_13 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.895e-201 643.0
DYD2_k127_2157713_130 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000004127 197.0
DYD2_k127_2157713_131 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000004605 190.0
DYD2_k127_2157713_132 ThiF family - - - 0.0000000000000000000000000000000000000000000000000001205 201.0
DYD2_k127_2157713_133 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000003797 204.0
DYD2_k127_2157713_134 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000065 190.0
DYD2_k127_2157713_135 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000001117 185.0
DYD2_k127_2157713_136 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000001571 197.0
DYD2_k127_2157713_137 SMART Nucleotide binding protein, PINc - - - 0.000000000000000000000000000000000000000000000000001582 196.0
DYD2_k127_2157713_138 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000002833 188.0
DYD2_k127_2157713_139 - - - - 0.000000000000000000000000000000000000000000000000004019 191.0
DYD2_k127_2157713_14 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 3.686e-194 628.0
DYD2_k127_2157713_140 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000005013 184.0
DYD2_k127_2157713_141 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000001226 181.0
DYD2_k127_2157713_142 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000004858 183.0
DYD2_k127_2157713_143 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000002147 179.0
DYD2_k127_2157713_144 Peptidase M15B and M15C DD-carboxypeptidase VanY endolysin K07260 - 3.4.17.14 0.000000000000000000000000000000000000000000000002548 183.0
DYD2_k127_2157713_145 SpoU rRNA Methylase family - - - 0.00000000000000000000000000000000000000000000002938 175.0
DYD2_k127_2157713_146 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000004134 175.0
DYD2_k127_2157713_147 Fructose-1,6-bisphosphate aldolase, class II K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000004562 181.0
DYD2_k127_2157713_148 Protein of unknown function (DUF3152) - - - 0.00000000000000000000000000000000000000000000006384 178.0
DYD2_k127_2157713_149 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000002035 174.0
DYD2_k127_2157713_15 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 584.0
DYD2_k127_2157713_150 Oxidoreductase FAD-binding domain - - - 0.000000000000000000000000000000000000000000001124 174.0
DYD2_k127_2157713_151 ZIP Zinc transporter K16267 - - 0.00000000000000000000000000000000000000000008997 170.0
DYD2_k127_2157713_152 Belongs to the peptidase S8 family K14645 - - 0.0000000000000000000000000000000000000000002209 179.0
DYD2_k127_2157713_153 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000006945 172.0
DYD2_k127_2157713_154 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000007425 164.0
DYD2_k127_2157713_155 50S ribosomal protein L4 K02926 - - 0.000000000000000000000000000000000000000001009 164.0
DYD2_k127_2157713_156 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000001084 168.0
DYD2_k127_2157713_157 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000002556 160.0
DYD2_k127_2157713_158 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000000000000002719 159.0
DYD2_k127_2157713_159 RmuC family K09760 - - 0.00000000000000000000000000000000000000001026 168.0
DYD2_k127_2157713_16 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 584.0
DYD2_k127_2157713_160 TIGRFAM autotransporter-associated beta strand repeat protein - - - 0.00000000000000000000000000000000000000001057 172.0
DYD2_k127_2157713_161 Mg2 transporter protein CorA family protein K03284 - - 0.00000000000000000000000000000000000000001112 166.0
DYD2_k127_2157713_162 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000001695 157.0
DYD2_k127_2157713_163 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000001728 156.0
DYD2_k127_2157713_164 Mur ligase family, glutamate ligase domain K03802 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000000000002099 166.0
DYD2_k127_2157713_165 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000005016 160.0
DYD2_k127_2157713_166 Lysin motif - - - 0.0000000000000000000000000000000000000005288 164.0
DYD2_k127_2157713_167 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000008231 152.0
DYD2_k127_2157713_168 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000002165 147.0
DYD2_k127_2157713_169 Prolyl oligopeptidase family K01046 - 3.1.1.3 0.00000000000000000000000000000000000006182 157.0
DYD2_k127_2157713_17 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 570.0
DYD2_k127_2157713_170 Activator of Hsp90 ATPase 1 family protein - - - 0.00000000000000000000000000000000000007418 147.0
DYD2_k127_2157713_171 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000008653 144.0
DYD2_k127_2157713_172 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000211 147.0
DYD2_k127_2157713_173 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.000000000000000000000000000000000007914 144.0
DYD2_k127_2157713_174 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000009061 145.0
DYD2_k127_2157713_175 Signal transduction histidine kinase K07652 - 2.7.13.3 0.00000000000000000000000000000000007882 151.0
DYD2_k127_2157713_176 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000002459 135.0
DYD2_k127_2157713_177 Cation efflux family - - - 0.0000000000000000000000000000000007238 144.0
DYD2_k127_2157713_178 Carboxypeptidase K07260 - 3.4.17.14 0.000000000000000000000000000000001041 140.0
DYD2_k127_2157713_179 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000001909 130.0
DYD2_k127_2157713_18 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676 527.0
DYD2_k127_2157713_180 HIT domain - - - 0.000000000000000000000000000000003124 134.0
DYD2_k127_2157713_181 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000005078 129.0
DYD2_k127_2157713_182 Thioredoxin - - - 0.00000000000000000000000000000001333 132.0
DYD2_k127_2157713_183 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075,K15780 - 2.4.2.8,6.3.4.19 0.00000000000000000000000000000002096 138.0
DYD2_k127_2157713_184 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000002321 146.0
DYD2_k127_2157713_185 Peptide methionine sulfoxide K07304 - 1.8.4.11 0.0000000000000000000000000000000323 130.0
DYD2_k127_2157713_186 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0015935,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031329,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043487,GO:0043488,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904 - 0.00000000000000000000000000000004779 129.0
DYD2_k127_2157713_187 G5 K21688 GO:0005575,GO:0005576,GO:0008150,GO:0009892,GO:0009893,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019222,GO:0022611,GO:0032502,GO:0040008,GO:0040009,GO:0040010,GO:0044111,GO:0044114,GO:0044115,GO:0044403,GO:0044419,GO:0045927,GO:0048518,GO:0048519,GO:0050789,GO:0051704,GO:0060255,GO:0065007,GO:0085016 - 0.00000000000000000000000000000004946 139.0
DYD2_k127_2157713_188 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000005526 127.0
DYD2_k127_2157713_189 Domain of unknown function (DUF296) K06934 - - 0.00000000000000000000000000000007662 132.0
DYD2_k127_2157713_19 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004956 500.0
DYD2_k127_2157713_190 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009378,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360 3.6.4.12 0.0000000000000000000000000000001076 131.0
DYD2_k127_2157713_191 YHS domain K06966 - 3.2.2.10 0.0000000000000000000000000000006535 129.0
DYD2_k127_2157713_192 Protein of unknown function DUF45 K07043 - - 0.000000000000000000000000000001884 130.0
DYD2_k127_2157713_193 Nicotianamine synthase K05953 GO:0000003,GO:0000902,GO:0000904,GO:0003006,GO:0006810,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010232,GO:0010233,GO:0016043,GO:0016049,GO:0022414,GO:0030154,GO:0032501,GO:0032502,GO:0032989,GO:0040007,GO:0044706,GO:0048229,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0051179,GO:0051234,GO:0051704,GO:0060560,GO:0071840 2.5.1.43 0.00000000000000000000000000005187 126.0
DYD2_k127_2157713_194 rRNA (guanine-N2-)-methyltransferase activity K08316 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052913,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.171 0.00000000000000000000000000007101 123.0
DYD2_k127_2157713_195 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000785 120.0
DYD2_k127_2157713_196 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000001681 123.0
DYD2_k127_2157713_197 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000005699 118.0
DYD2_k127_2157713_198 Belongs to the peptidase S51 family K05995 - 3.4.13.21 0.0000000000000000000000000008043 121.0
DYD2_k127_2157713_199 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000002194 121.0
DYD2_k127_2157713_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1115.0
DYD2_k127_2157713_20 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004298 508.0
DYD2_k127_2157713_200 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000002522 115.0
DYD2_k127_2157713_201 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000002904 111.0
DYD2_k127_2157713_202 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000007647 115.0
DYD2_k127_2157713_203 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000009617 115.0
DYD2_k127_2157713_205 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000004854 116.0
DYD2_k127_2157713_206 Guanylate kinase homologues. K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000005878 116.0
DYD2_k127_2157713_207 Metal-sensitive transcriptional repressor K21600 - - 0.00000000000000000000000008358 110.0
DYD2_k127_2157713_208 establishment of competence for transformation K02238 - - 0.0000000000000000000000002194 121.0
DYD2_k127_2157713_209 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000002371 109.0
DYD2_k127_2157713_21 Mur ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 492.0
DYD2_k127_2157713_210 RNA-binding - - - 0.000000000000000000000000393 109.0
DYD2_k127_2157713_211 DNA-binding transcription factor activity - - - 0.0000000000000000000000006407 107.0
DYD2_k127_2157713_212 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000113 115.0
DYD2_k127_2157713_213 Cysteine-rich secretory protein family - - - 0.000000000000000000000001368 115.0
DYD2_k127_2157713_214 - - - - 0.000000000000000000000001608 117.0
DYD2_k127_2157713_215 Alternative locus ID K00518 - 1.15.1.1 0.000000000000000000000002096 108.0
DYD2_k127_2157713_216 Domain of unknown function (DUF4347) - - - 0.00000000000000000000000225 119.0
DYD2_k127_2157713_217 Bacterial protein of unknown function (DUF916) - - - 0.000000000000000000000002294 116.0
DYD2_k127_2157713_218 PFAM TPR repeat-containing protein - - - 0.000000000000000000000002406 118.0
DYD2_k127_2157713_219 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0008150,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000005083 105.0
DYD2_k127_2157713_22 Alpha-amylase domain K01187,K05343 - 3.2.1.1,3.2.1.20,5.4.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008558 494.0
DYD2_k127_2157713_220 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000005569 108.0
DYD2_k127_2157713_221 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000003037 109.0
DYD2_k127_2157713_222 Belongs to the SUA5 family K07566 - 2.7.7.87 0.00000000000000000000007557 105.0
DYD2_k127_2157713_223 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000001014 110.0
DYD2_k127_2157713_224 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000001784 102.0
DYD2_k127_2157713_225 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 GO:0008150,GO:0040007 - 0.0000000000000000000008788 103.0
DYD2_k127_2157713_226 Sortase family - - - 0.000000000000000000001202 107.0
DYD2_k127_2157713_227 Prokaryotic Cytochrome C oxidase subunit IV K02300 - - 0.000000000000000000001296 98.0
DYD2_k127_2157713_228 Transglycosylase associated protein - - - 0.00000000000000000001288 94.0
DYD2_k127_2157713_229 Belongs to the ribulose-phosphate 3-epimerase family K01783 GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 5.1.3.1 0.00000000000000000002356 98.0
DYD2_k127_2157713_23 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 475.0
DYD2_k127_2157713_230 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000002604 92.0
DYD2_k127_2157713_231 Mg2 and Co2 transporter CorC K06189 - - 0.000000000000000001022 98.0
DYD2_k127_2157713_232 belongs to the Fur family K02076,K03711,K09825 - - 0.00000000000000000121 91.0
DYD2_k127_2157713_233 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000003538 91.0
DYD2_k127_2157713_234 Putative ATP-dependant zinc protease - - - 0.00000000000000000459 91.0
DYD2_k127_2157713_235 G3E family - - - 0.000000000000000005182 94.0
DYD2_k127_2157713_236 pfkB family carbohydrate kinase - - - 0.000000000000000007899 94.0
DYD2_k127_2157713_237 - - - - 0.00000000000000002811 95.0
DYD2_k127_2157713_238 Transcriptional regulatory protein, C terminal K07658 - - 0.00000000000000007837 87.0
DYD2_k127_2157713_239 - K03655 - 3.6.4.12 0.00000000000000008031 88.0
DYD2_k127_2157713_24 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 471.0
DYD2_k127_2157713_240 Modulates RecA activity K03565,K19002 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019899,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496 2.4.1.337 0.00000000000000009237 88.0
DYD2_k127_2157713_241 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000001467 84.0
DYD2_k127_2157713_242 YGGT family - - - 0.0000000000000001524 84.0
DYD2_k127_2157713_243 Phosphoglycerate mutase family - - - 0.000000000000000223 86.0
DYD2_k127_2157713_244 Belongs to the Nudix hydrolase family - - - 0.0000000000000002388 85.0
DYD2_k127_2157713_245 of HD superfamily K07023 - - 0.000000000000008691 83.0
DYD2_k127_2157713_246 KH domain K06960 - - 0.00000000000001491 79.0
DYD2_k127_2157713_247 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000001725 77.0
DYD2_k127_2157713_248 - K01992 - - 0.00000000000002913 82.0
DYD2_k127_2157713_249 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914,K21828 - - 0.00000000000002925 81.0
DYD2_k127_2157713_25 PFAM Glycoside hydrolase, family 37 K01194 - 3.2.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 480.0
DYD2_k127_2157713_250 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 - 5.2.1.8 0.00000000000004408 79.0
DYD2_k127_2157713_252 Domain of unknown function (DUF4142) - - - 0.0000000000008483 74.0
DYD2_k127_2157713_253 COG0470 ATPase involved in DNA replication K02341 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0000000000008981 78.0
DYD2_k127_2157713_254 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.000000000002195 73.0
DYD2_k127_2157713_255 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000004625 66.0
DYD2_k127_2157713_256 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.00000000002363 74.0
DYD2_k127_2157713_257 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.00000000003479 70.0
DYD2_k127_2157713_258 Peptidase S24-like K03503 - - 0.00000000005342 68.0
DYD2_k127_2157713_259 Response regulator receiver - - - 0.0000000001773 70.0
DYD2_k127_2157713_26 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 468.0
DYD2_k127_2157713_260 - - - - 0.0000000002199 63.0
DYD2_k127_2157713_261 PFAM Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000002685 64.0
DYD2_k127_2157713_262 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000004444 65.0
DYD2_k127_2157713_263 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000006915 65.0
DYD2_k127_2157713_264 coenzyme F420 binding K00275 - 1.4.3.5 0.0000000009644 66.0
DYD2_k127_2157713_265 PaaX-like protein C-terminal domain K02616 - - 0.000000001569 66.0
DYD2_k127_2157713_266 Universal bacterial protein YeaZ K14742 - - 0.000000001621 64.0
DYD2_k127_2157713_267 HIT domain - - - 0.000000001835 66.0
DYD2_k127_2157713_268 DUF218 domain - - - 0.000000002074 66.0
DYD2_k127_2157713_269 Baseplate J-like protein - - - 0.000000002268 70.0
DYD2_k127_2157713_27 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009788 460.0
DYD2_k127_2157713_270 domain, Protein - - - 0.000000002343 70.0
DYD2_k127_2157713_271 Protein of unknown function (DUF1653) - - - 0.000000002665 61.0
DYD2_k127_2157713_272 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000003374 63.0
DYD2_k127_2157713_274 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000001986 64.0
DYD2_k127_2157713_275 Chromatin associated protein KTI12 - - - 0.00000002093 63.0
DYD2_k127_2157713_276 mechanosensitive ion channel protein MscS K22044 - - 0.00000002468 65.0
DYD2_k127_2157713_277 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0033218,GO:0042277,GO:0043167,GO:0043168,GO:0043295,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0055114,GO:0072341,GO:1900750,GO:1901681 - 0.00000003243 59.0
DYD2_k127_2157713_278 HIT domain K02503 - - 0.00000003508 60.0
DYD2_k127_2157713_279 PFAM peptidase C60, sortase A and B - - - 0.00000004412 62.0
DYD2_k127_2157713_28 Malic enzyme K00027 - 1.1.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 454.0
DYD2_k127_2157713_280 peptidase - - - 0.0000001006 62.0
DYD2_k127_2157713_281 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000001733 57.0
DYD2_k127_2157713_282 general secretion pathway protein G K02456 - - 0.0000008499 57.0
DYD2_k127_2157713_283 Phosphoesterase PA-phosphatase related K19302 - 3.6.1.27 0.000001581 57.0
DYD2_k127_2157713_284 membrane protein (DUF2078) K08982 - - 0.000002544 52.0
DYD2_k127_2157713_285 Scavenger mRNA decapping enzyme C-term binding - - - 0.000004066 54.0
DYD2_k127_2157713_289 alginic acid biosynthetic process K10297 - - 0.00001336 48.0
DYD2_k127_2157713_29 alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008279 456.0
DYD2_k127_2157713_290 Ribosomal protein L33 - - - 0.00003916 48.0
DYD2_k127_2157713_293 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.0000893 47.0
DYD2_k127_2157713_294 Resolvase, N terminal domain - - - 0.0001211 45.0
DYD2_k127_2157713_295 Psort location Cytoplasmic, score 7.50 - - - 0.0001211 45.0
DYD2_k127_2157713_296 PRC-barrel domain - - - 0.0001401 51.0
DYD2_k127_2157713_297 GtrA-like protein - - - 0.0002146 48.0
DYD2_k127_2157713_298 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0002844 47.0
DYD2_k127_2157713_299 - - - - 0.0002999 44.0
DYD2_k127_2157713_3 Cytochrome C and Quinol oxidase polypeptide I K02298 - 1.10.3.10 1.926e-296 921.0
DYD2_k127_2157713_30 General secretory system II protein E domain protein K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 460.0
DYD2_k127_2157713_302 Gas vesicle protein - - - 0.0006068 47.0
DYD2_k127_2157713_31 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007556 449.0
DYD2_k127_2157713_32 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009125,GO:0009129,GO:0009130,GO:0009131,GO:0009157,GO:0009159,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009178,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0032259,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042083,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046073,GO:0046078,GO:0046079,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 438.0
DYD2_k127_2157713_33 (ABC) transporter K06147,K12531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000561 447.0
DYD2_k127_2157713_34 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 431.0
DYD2_k127_2157713_35 Conserved repeat domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 426.0
DYD2_k127_2157713_36 glycoside hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 428.0
DYD2_k127_2157713_37 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 415.0
DYD2_k127_2157713_38 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 402.0
DYD2_k127_2157713_39 Rhodanase C-terminal K07146 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 397.0
DYD2_k127_2157713_4 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 7.868e-293 940.0
DYD2_k127_2157713_40 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 404.0
DYD2_k127_2157713_41 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006374 394.0
DYD2_k127_2157713_42 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K05365 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 407.0
DYD2_k127_2157713_43 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 383.0
DYD2_k127_2157713_44 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 404.0
DYD2_k127_2157713_45 COG2925 Exonuclease I K01141 GO:0000175,GO:0000287,GO:0000738,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008852,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016829,GO:0016835,GO:0016895,GO:0016896,GO:0019439,GO:0034641,GO:0034655,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0046872,GO:0051575,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575 3.1.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 387.0
DYD2_k127_2157713_46 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 378.0
DYD2_k127_2157713_47 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004976 374.0
DYD2_k127_2157713_48 PFAM TrkA-N domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008574 381.0
DYD2_k127_2157713_49 Belongs to the MurCDEF family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003724 372.0
DYD2_k127_2157713_5 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 9.421e-280 882.0
DYD2_k127_2157713_50 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 374.0
DYD2_k127_2157713_51 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002714 359.0
DYD2_k127_2157713_52 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 349.0
DYD2_k127_2157713_53 aminotransferase class V K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 353.0
DYD2_k127_2157713_54 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 350.0
DYD2_k127_2157713_55 Belongs to the RimK family K05844 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 342.0
DYD2_k127_2157713_56 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 349.0
DYD2_k127_2157713_57 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009185 346.0
DYD2_k127_2157713_58 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 342.0
DYD2_k127_2157713_59 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 354.0
DYD2_k127_2157713_6 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.392e-267 841.0
DYD2_k127_2157713_60 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 330.0
DYD2_k127_2157713_61 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 336.0
DYD2_k127_2157713_62 D-ala D-ala ligase N-terminus K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 328.0
DYD2_k127_2157713_63 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004292 325.0
DYD2_k127_2157713_64 Domain of unknown function (DUF4113) K03502 GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009355,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019438,GO:0019985,GO:0031224,GO:0031668,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044425,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071496,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004547 327.0
DYD2_k127_2157713_65 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006317 346.0
DYD2_k127_2157713_66 Belongs to the ClpA ClpB family K03695,K03696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 336.0
DYD2_k127_2157713_67 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004761 316.0
DYD2_k127_2157713_68 COX Aromatic Rich Motif K02297 - 1.10.3.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 313.0
DYD2_k127_2157713_69 glutamine amidotransferase K07009 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 311.0
DYD2_k127_2157713_7 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 3.139e-262 822.0
DYD2_k127_2157713_70 tRNA synthetase, class II (D, K and N) K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 316.0
DYD2_k127_2157713_71 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 314.0
DYD2_k127_2157713_72 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 313.0
DYD2_k127_2157713_73 COG COG1459 Type II secretory pathway component PulF Cell motility and secretion Intracellular trafficking and secretion K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 306.0
DYD2_k127_2157713_74 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 304.0
DYD2_k127_2157713_75 Cell division protein FtsA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 306.0
DYD2_k127_2157713_76 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 306.0
DYD2_k127_2157713_77 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 296.0
DYD2_k127_2157713_78 PFAM glycosyl transferase, family 51 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 319.0
DYD2_k127_2157713_79 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 305.0
DYD2_k127_2157713_8 Heat shock 70 kDa protein K04043 - - 1.254e-243 768.0
DYD2_k127_2157713_80 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 299.0
DYD2_k127_2157713_81 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009779 296.0
DYD2_k127_2157713_82 Transport permease protein K01990,K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 287.0
DYD2_k127_2157713_83 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 294.0
DYD2_k127_2157713_84 Cytochrome C biogenesis protein transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004282 282.0
DYD2_k127_2157713_85 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002881 287.0
DYD2_k127_2157713_86 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002994 282.0
DYD2_k127_2157713_87 integral membrane protein K09799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000013 277.0
DYD2_k127_2157713_88 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000288 285.0
DYD2_k127_2157713_89 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002982 273.0
DYD2_k127_2157713_9 Belongs to the ClpA ClpB family K03696 - - 1.993e-227 730.0
DYD2_k127_2157713_90 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000576 275.0
DYD2_k127_2157713_91 Starch synthase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000218 275.0
DYD2_k127_2157713_92 PFAM Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000004151 272.0
DYD2_k127_2157713_93 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000007162 269.0
DYD2_k127_2157713_94 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001661 259.0
DYD2_k127_2157713_95 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000043 259.0
DYD2_k127_2157713_96 General secretion pathway protein K02454 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000000000000000000000000000000001323 274.0
DYD2_k127_2157713_97 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000848 258.0
DYD2_k127_2157713_98 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000008071 260.0
DYD2_k127_2157713_99 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000001492 256.0
DYD2_k127_2186037_0 Nudix N-terminal - - - 0.000000002702 59.0
DYD2_k127_2209814_0 Transposase (IS116 IS110 IS902 family) - - - 0.0000000000000000000000000000000000000005596 163.0
DYD2_k127_2303180_0 - - - - 0.00000000000000006994 83.0
DYD2_k127_2303180_1 - - - - 0.00000000000000009005 81.0
DYD2_k127_2303180_2 - - - - 0.0000000000000001045 81.0
DYD2_k127_2303180_4 - - - - 0.000000000000003782 75.0
DYD2_k127_2303180_6 LAGLIDADG endonuclease - - - 0.000003652 51.0
DYD2_k127_2324215_0 Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000135 205.0
DYD2_k127_2324215_1 Transposase DDE domain - - - 0.0000000000000000001864 94.0
DYD2_k127_2324215_2 Domain of unknown function (DUF4343) - - - 0.00000000000004339 75.0
DYD2_k127_2380217_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007294 249.0
DYD2_k127_2380217_1 endonuclease activity - - - 0.00000000000000000000000000000000000000000000003782 177.0
DYD2_k127_2380217_2 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.0000000000000000000000000000000000000003233 149.0
DYD2_k127_2380217_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000004406 60.0
DYD2_k127_2380217_5 transposase activity K07483 - - 0.00008238 49.0
DYD2_k127_2468480_0 Transposase - - - 0.000000000000000000000003515 107.0
DYD2_k127_2468480_1 PFAM Transposase DDE domain - - - 0.00000000000002319 82.0
DYD2_k127_2548821_0 PFAM Transposase DDE domain - - - 0.00000000000000000000000000000000000000000001211 166.0
DYD2_k127_2548821_1 Helix-turn-helix of DDE superfamily endonuclease - - - 0.00000000000000000000000001782 113.0
DYD2_k127_257283_0 PFAM Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 557.0
DYD2_k127_2640561_0 transposase IS116 IS110 IS902 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 524.0
DYD2_k127_2658688_0 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000002353 109.0
DYD2_k127_2658688_2 - - - - 0.00007875 48.0
DYD2_k127_2658688_3 Domain of unknown function (DUF4224) - - - 0.000729 44.0
DYD2_k127_2745111_0 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 341.0
DYD2_k127_2745111_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000008709 139.0
DYD2_k127_2751063_0 COG4618 ABC-type protease lipase transport system, ATPase and permease components K06148 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 509.0
DYD2_k127_2751063_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 512.0
DYD2_k127_2751063_10 pilus organization K02674,K07004 - - 0.0000000000000000000000000000000000000000000000001535 203.0
DYD2_k127_2751063_11 HemY domain protein - - - 0.0000000000000000000000000000000000000000000000001535 203.0
DYD2_k127_2751063_12 Transposase - - - 0.00000000000000000000000000000000000000000002861 168.0
DYD2_k127_2751063_13 hmm pf01609 - - - 0.000000000000000000000000005474 111.0
DYD2_k127_2751063_15 Winged helix-turn helix - - - 0.00000005396 57.0
DYD2_k127_2751063_16 Transposase IS116/IS110/IS902 family - - - 0.0002152 45.0
DYD2_k127_2751063_17 Transposase DDE domain - - - 0.0002876 48.0
DYD2_k127_2751063_2 Transposase K07493 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000087 449.0
DYD2_k127_2751063_3 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 338.0
DYD2_k127_2751063_4 Type I secretion membrane fusion protein, HlyD K16300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 326.0
DYD2_k127_2751063_5 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004666 271.0
DYD2_k127_2751063_6 pathogenesis - - - 0.0000000000000000000000000000000000000000000000000000000007755 208.0
DYD2_k127_2751063_7 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000000000000000000000000000000000000000000000000000000004732 227.0
DYD2_k127_2751063_8 Transposase DDE domain K07492 - - 0.00000000000000000000000000000000000000000000000000000002058 205.0
DYD2_k127_2751063_9 cellular response to phosphate starvation - - - 0.000000000000000000000000000000000000000000000000000001165 202.0
DYD2_k127_2989320_0 Transposase - - - 0.00000000000000000000000000000000001096 141.0
DYD2_k127_2989320_1 DDE superfamily endonuclease - - - 0.000000000000000000000000000000001987 135.0
DYD2_k127_300145_0 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002462 426.0
DYD2_k127_300145_1 Winged helix-turn helix - - - 0.0000000000000000000000000000000000002424 156.0
DYD2_k127_3234346_0 methyltransferase activity - GO:0008150,GO:0040007 - 0.0000000000000000000000000000000001178 144.0
DYD2_k127_3284205_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 330.0
DYD2_k127_3284205_1 Histidine kinase K07651 - 2.7.13.3 0.000000000000000000000000000000000000000000003108 184.0
DYD2_k127_3284205_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000004385 158.0
DYD2_k127_3284205_3 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000001151 156.0
DYD2_k127_3284205_4 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000002766 137.0
DYD2_k127_3284205_5 TIGRFAM phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.000000000000000008145 94.0
DYD2_k127_3284205_6 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000005503 88.0
DYD2_k127_3284205_7 - - - - 0.00004476 52.0
DYD2_k127_3331012_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 2.806e-201 637.0
DYD2_k127_3331012_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 564.0
DYD2_k127_3331012_10 FAD linked oxidases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001858 253.0
DYD2_k127_3331012_11 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000003014 228.0
DYD2_k127_3331012_12 ABC transporter C-terminal domain K06158 - - 0.000000000000000000000000000000000000000000000000000000000000004493 237.0
DYD2_k127_3331012_13 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000001176 198.0
DYD2_k127_3331012_14 membrane - - - 0.00000000000000000000000000000000000000000000000000001228 197.0
DYD2_k127_3331012_15 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000003005 195.0
DYD2_k127_3331012_16 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.000000000000000000000000000000000000000002274 158.0
DYD2_k127_3331012_17 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000004145 171.0
DYD2_k127_3331012_18 Fibronectin type 3 domain - - - 0.00000000000000000000000000000000000000006052 167.0
DYD2_k127_3331012_19 AI-2E family transporter - - - 0.00000000000000000000000000000000000000006297 165.0
DYD2_k127_3331012_2 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 473.0
DYD2_k127_3331012_20 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000001254 154.0
DYD2_k127_3331012_22 Nudix (nucleoside diphosphate linked moiety X)-type motif 1 K03574,K17816 GO:0000003,GO:0001669,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006259,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007154,GO:0007275,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008406,GO:0008413,GO:0008584,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022414,GO:0030141,GO:0030515,GO:0031090,GO:0031410,GO:0031668,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0036219,GO:0042221,GO:0042262,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044713,GO:0044714,GO:0045137,GO:0046060,GO:0046061,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046546,GO:0046661,GO:0046686,GO:0046700,GO:0047429,GO:0047693,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0055086,GO:0061458,GO:0070013,GO:0071496,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0090304,GO:0097159,GO:0097223,GO:0097708,GO:0099503,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.6.1.55,3.6.1.56 0.000000000000000000000000000000000002299 143.0
DYD2_k127_3331012_23 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000009358 149.0
DYD2_k127_3331012_24 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 - 2.5.1.17 0.000000000000000000000000000008031 125.0
DYD2_k127_3331012_25 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000006589 127.0
DYD2_k127_3331012_26 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000005806 122.0
DYD2_k127_3331012_27 DHHA1 domain protein K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000001007 125.0
DYD2_k127_3331012_28 membrane - - - 0.000000000000000000001548 100.0
DYD2_k127_3331012_29 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000001367 97.0
DYD2_k127_3331012_3 cysteine-tRNA ligase activity K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 411.0
DYD2_k127_3331012_30 N-terminal domain of (some) glycogen debranching enzymes - - - 0.0000000000000000004414 101.0
DYD2_k127_3331012_31 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0017148,GO:0019222,GO:0019538,GO:0022625,GO:0022626,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.000000000000003028 82.0
DYD2_k127_3331012_32 Glutathione S-transferase, N-terminal domain - - - 0.000000000000009754 76.0
DYD2_k127_3331012_33 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000002091 73.0
DYD2_k127_3331012_34 NUDIX domain - - - 0.0000000000004039 78.0
DYD2_k127_3331012_35 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000005573 74.0
DYD2_k127_3331012_36 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000004711 61.0
DYD2_k127_3331012_37 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000009213 59.0
DYD2_k127_3331012_38 Belongs to the Nudix hydrolase family - - - 0.0000002568 61.0
DYD2_k127_3331012_39 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000005975 53.0
DYD2_k127_3331012_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 385.0
DYD2_k127_3331012_40 5'-deoxynucleotidase activity K07023 - - 0.0000006749 59.0
DYD2_k127_3331012_41 transferase activity, transferring glycosyl groups - - - 0.00000546 59.0
DYD2_k127_3331012_42 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000634 57.0
DYD2_k127_3331012_44 HNH endonuclease - - - 0.0002086 51.0
DYD2_k127_3331012_5 Belongs to the helicase family. UvrD subfamily K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002575 387.0
DYD2_k127_3331012_6 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01142 GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 341.0
DYD2_k127_3331012_7 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 303.0
DYD2_k127_3331012_8 transferase activity, transferring glycosyl groups K13678 GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001228 281.0
DYD2_k127_3331012_9 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001923 282.0
DYD2_k127_3443857_0 ADP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002978 347.0
DYD2_k127_3671991_0 Ribonucleotide reductase, barrel domain K00525 - 1.17.4.1 0.0 1037.0
DYD2_k127_3671991_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.018e-267 847.0
DYD2_k127_3671991_10 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 527.0
DYD2_k127_3671991_100 Signal peptidase, peptidase S26 K03100 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.4.21.89 0.00000000000000000005409 97.0
DYD2_k127_3671991_101 Cell envelope-related transcriptional attenuator domain - - - 0.00000000000000000005823 104.0
DYD2_k127_3671991_102 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567,K07443 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0019899,GO:0097159,GO:1901363 2.1.1.63 0.000000000000000000216 91.0
DYD2_k127_3671991_104 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000002375 89.0
DYD2_k127_3671991_105 Beta-lactamase superfamily domain - - - 0.00000000000000002405 90.0
DYD2_k127_3671991_106 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.0000000000000001212 89.0
DYD2_k127_3671991_107 HxlR-like helix-turn-helix - - - 0.0000000000000005472 81.0
DYD2_k127_3671991_108 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000255 79.0
DYD2_k127_3671991_109 rRNA binding K02963 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048027,GO:0070181,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000002692 77.0
DYD2_k127_3671991_11 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01835,K01840 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 509.0
DYD2_k127_3671991_110 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000003364 81.0
DYD2_k127_3671991_111 - - - - 0.000000000000005421 75.0
DYD2_k127_3671991_112 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000006797 76.0
DYD2_k127_3671991_113 outer membrane autotransporter barrel domain K12685 - - 0.0000000000001109 87.0
DYD2_k127_3671991_114 AAA domain K00859 - 2.7.1.24 0.000000000000212 78.0
DYD2_k127_3671991_115 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000002355 80.0
DYD2_k127_3671991_116 Sortase (surface protein transpeptidase) - - - 0.0000000000003215 80.0
DYD2_k127_3671991_117 Transcriptional regulator - - - 0.0000000000003394 77.0
DYD2_k127_3671991_118 DUF218 domain - - - 0.000000000002467 70.0
DYD2_k127_3671991_119 - - - - 0.000000000003674 70.0
DYD2_k127_3671991_12 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009945 496.0
DYD2_k127_3671991_120 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000216 74.0
DYD2_k127_3671991_121 CAAX protease self-immunity K07052 - - 0.00000000005776 72.0
DYD2_k127_3671991_122 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000002599 63.0
DYD2_k127_3671991_124 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000005847 61.0
DYD2_k127_3671991_125 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000726 69.0
DYD2_k127_3671991_126 Phosphoribosyl transferase domain K07100 - - 0.0000000009462 68.0
DYD2_k127_3671991_128 - - - - 0.000000003717 58.0
DYD2_k127_3671991_129 Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K03769,K07533 - 5.2.1.8 0.000000005417 68.0
DYD2_k127_3671991_13 Belongs to the FtsK SpoIIIE SftA family K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 490.0
DYD2_k127_3671991_130 Hep Hag repeat protein K15125,K18491,K20276,K21449 - - 0.000000008465 71.0
DYD2_k127_3671991_131 - - - - 0.00000003838 61.0
DYD2_k127_3671991_132 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000003922 61.0
DYD2_k127_3671991_133 PFAM DNA polymerase, beta domain protein region - - - 0.00000004448 58.0
DYD2_k127_3671991_134 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.00000006922 59.0
DYD2_k127_3671991_135 PFAM ATP synthase, Delta Epsilon chain, beta-sandwich domain K02114 - - 0.00000007383 58.0
DYD2_k127_3671991_137 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000001182 55.0
DYD2_k127_3671991_139 receptor - - - 0.000002041 51.0
DYD2_k127_3671991_14 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 482.0
DYD2_k127_3671991_140 - - - - 0.000002056 53.0
DYD2_k127_3671991_141 regulation of cytokinesis K10447 - - 0.000002242 62.0
DYD2_k127_3671991_142 Helix-turn-helix XRE-family like proteins - - - 0.00001427 48.0
DYD2_k127_3671991_143 - - - - 0.00001749 48.0
DYD2_k127_3671991_144 Binds directly to 16S ribosomal RNA K02968 - - 0.0000259 51.0
DYD2_k127_3671991_145 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.00002768 57.0
DYD2_k127_3671991_146 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.00004872 46.0
DYD2_k127_3671991_147 - - - - 0.0001011 44.0
DYD2_k127_3671991_148 alginic acid biosynthetic process K10297 - - 0.0002543 44.0
DYD2_k127_3671991_15 Mg chelatase-like protein K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 464.0
DYD2_k127_3671991_150 - - - - 0.0009163 43.0
DYD2_k127_3671991_16 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 449.0
DYD2_k127_3671991_17 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 445.0
DYD2_k127_3671991_18 General secretory system II protein E domain protein K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007516 432.0
DYD2_k127_3671991_19 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 395.0
DYD2_k127_3671991_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 3.512e-242 779.0
DYD2_k127_3671991_20 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 392.0
DYD2_k127_3671991_21 PFAM type II secretion system protein E K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 386.0
DYD2_k127_3671991_22 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 374.0
DYD2_k127_3671991_23 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005421 385.0
DYD2_k127_3671991_24 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003924 369.0
DYD2_k127_3671991_25 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 358.0
DYD2_k127_3671991_26 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:1901564 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 346.0
DYD2_k127_3671991_27 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 348.0
DYD2_k127_3671991_28 helicase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002892 347.0
DYD2_k127_3671991_29 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 325.0
DYD2_k127_3671991_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 7.118e-238 752.0
DYD2_k127_3671991_30 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009361,GO:0009987,GO:0016310,GO:0019538,GO:0032991,GO:0036211,GO:0042709,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0046777,GO:0071704,GO:1901564,GO:1902494 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 295.0
DYD2_k127_3671991_31 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 GO:0002161,GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043906,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 298.0
DYD2_k127_3671991_32 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 296.0
DYD2_k127_3671991_33 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009993 293.0
DYD2_k127_3671991_34 PFAM Bacterial type II secretion system protein F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007254 289.0
DYD2_k127_3671991_35 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003244 278.0
DYD2_k127_3671991_36 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002848 286.0
DYD2_k127_3671991_37 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002473 278.0
DYD2_k127_3671991_38 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006569 279.0
DYD2_k127_3671991_39 Cellulase (glycosyl hydrolase family 5) - - - 0.00000000000000000000000000000000000000000000000000000000000000000002506 244.0
DYD2_k127_3671991_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 2.271e-232 741.0
DYD2_k127_3671991_40 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000004133 240.0
DYD2_k127_3671991_41 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000002224 239.0
DYD2_k127_3671991_42 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000332 236.0
DYD2_k127_3671991_43 serine-type endopeptidase activity K08372 - - 0.0000000000000000000000000000000000000000000000000000000000000005131 234.0
DYD2_k127_3671991_44 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000007478 239.0
DYD2_k127_3671991_45 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000004812 221.0
DYD2_k127_3671991_46 Metallopeptidase family M24 K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000003624 219.0
DYD2_k127_3671991_47 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000005946 218.0
DYD2_k127_3671991_48 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0001871,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005623,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0019538,GO:0030246,GO:0030247,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065 - 0.0000000000000000000000000000000000000000000000000000000000006985 215.0
DYD2_k127_3671991_49 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000008831 219.0
DYD2_k127_3671991_5 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 1.326e-202 660.0
DYD2_k127_3671991_50 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000008921 209.0
DYD2_k127_3671991_51 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000001337 208.0
DYD2_k127_3671991_52 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000007858 202.0
DYD2_k127_3671991_53 Bacterial phospho-glucose isomerase C-terminal SIS domain K15916 - 5.3.1.8,5.3.1.9 0.0000000000000000000000000000000000000000000000000000008482 205.0
DYD2_k127_3671991_54 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000639 204.0
DYD2_k127_3671991_55 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000001461 194.0
DYD2_k127_3671991_56 recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000006476 192.0
DYD2_k127_3671991_57 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493,K07320 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009007,GO:0009008,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0032775,GO:0034641,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044728,GO:0046483,GO:0071704,GO:0090304,GO:0140096,GO:0140097,GO:1901360,GO:1901564 2.1.1.297,2.1.1.298 0.00000000000000000000000000000000000000000000000001323 190.0
DYD2_k127_3671991_58 quinone binding - - - 0.00000000000000000000000000000000000000000000000004106 186.0
DYD2_k127_3671991_59 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000005205 186.0
DYD2_k127_3671991_6 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 1.242e-200 647.0
DYD2_k127_3671991_60 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000006734 183.0
DYD2_k127_3671991_61 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000001029 188.0
DYD2_k127_3671991_62 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000006829 175.0
DYD2_k127_3671991_63 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000007933 174.0
DYD2_k127_3671991_64 SMART PDZ DHR GLGF domain protein K11749 - - 0.00000000000000000000000000000000000000000005533 175.0
DYD2_k127_3671991_65 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031224,GO:0031226,GO:0042221,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050380,GO:0050896,GO:0071944 3.6.1.27 0.000000000000000000000000000000000000000000524 168.0
DYD2_k127_3671991_66 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000005335 161.0
DYD2_k127_3671991_67 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000009522 158.0
DYD2_k127_3671991_68 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000005057 157.0
DYD2_k127_3671991_69 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004518,GO:0004550,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006464,GO:0006468,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016788,GO:0018995,GO:0019205,GO:0019538,GO:0019637,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034641,GO:0036211,GO:0042025,GO:0043170,GO:0043412,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044464,GO:0046483,GO:0046777,GO:0046939,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072527,GO:0090304,GO:0090305,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000008737 159.0
DYD2_k127_3671991_7 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 619.0
DYD2_k127_3671991_70 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 0.00000000000000000000000000000000000000009487 153.0
DYD2_k127_3671991_71 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000001556 154.0
DYD2_k127_3671991_72 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000001903 153.0
DYD2_k127_3671991_73 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000002909 145.0
DYD2_k127_3671991_74 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000004117 150.0
DYD2_k127_3671991_75 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000009226 143.0
DYD2_k127_3671991_76 Single-stranded DNA-binding protein K03111 - - 0.00000000000000000000000000000000001249 140.0
DYD2_k127_3671991_77 - - - - 0.00000000000000000000000000000000006324 136.0
DYD2_k127_3671991_78 Peptidase M50 - - - 0.00000000000000000000000000000000545 139.0
DYD2_k127_3671991_79 - - - - 0.00000000000000000000000000000003513 130.0
DYD2_k127_3671991_8 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000362 565.0
DYD2_k127_3671991_80 RNase H K03469 - 3.1.26.4 0.000000000000000000000000000004757 130.0
DYD2_k127_3671991_81 COG NOG14552 non supervised orthologous group - - - 0.0000000000000000000000000000722 117.0
DYD2_k127_3671991_82 Ribosomal protein L31 K02909 - - 0.00000000000000000000000000007505 119.0
DYD2_k127_3671991_83 DUF218 domain - - - 0.00000000000000000000000000007593 119.0
DYD2_k127_3671991_84 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360 - 0.0000000000000000000000000002474 122.0
DYD2_k127_3671991_85 YjbR - - - 0.0000000000000000000000000008334 116.0
DYD2_k127_3671991_86 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000001452 119.0
DYD2_k127_3671991_87 HIT domain K02503 - - 0.000000000000000000000000004241 116.0
DYD2_k127_3671991_88 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0000166,GO:0003674,GO:0003824,GO:0004017,GO:0004550,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006165,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009141,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032261,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043173,GO:0044209,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046390,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.3 0.000000000000000000000000007881 117.0
DYD2_k127_3671991_89 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000000000000001598 122.0
DYD2_k127_3671991_9 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 537.0
DYD2_k127_3671991_90 Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress - - - 0.00000000000000000000000002038 117.0
DYD2_k127_3671991_91 Zincin-like metallopeptidase - - - 0.00000000000000000000000003832 113.0
DYD2_k127_3671991_92 - - - - 0.000000000000000000000003817 109.0
DYD2_k127_3671991_93 Fructokinase K00847 - 2.7.1.4 0.00000000000000000000000667 111.0
DYD2_k127_3671991_94 - - - - 0.000000000000000000000116 100.0
DYD2_k127_3671991_95 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071944,GO:1990904 - 0.0000000000000000000002858 98.0
DYD2_k127_3671991_96 competence protein - - - 0.000000000000000000001749 104.0
DYD2_k127_3671991_97 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000004727 94.0
DYD2_k127_3671991_98 Divergent PAP2 family K09775 - - 0.00000000000000000001118 96.0
DYD2_k127_3671991_99 Yqey-like protein K09117 - - 0.00000000000000000005147 95.0
DYD2_k127_3709354_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis - - - 0.000000000000001187 86.0
DYD2_k127_3709354_1 Transposase, Mutator family - - - 0.0000008305 54.0
DYD2_k127_3753_0 PFAM Integrase catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 374.0
DYD2_k127_3753_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000002343 146.0
DYD2_k127_3753_2 - - - - 0.0002799 46.0
DYD2_k127_3776835_0 - - - - 0.000000000000000000000000000000000000000000002062 165.0
DYD2_k127_3776835_1 COG NOG15344 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000000158 164.0
DYD2_k127_3776835_2 - - - - 0.000000000000000000000000000000006041 131.0
DYD2_k127_3776835_3 - - - - 0.00000000000002985 72.0
DYD2_k127_3776835_4 - - - - 0.000000000004133 66.0
DYD2_k127_3788151_0 P22 coat protein - gene protein 5 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006869 257.0
DYD2_k127_3788151_1 - - - - 0.0000000000000000002702 96.0
DYD2_k127_3788151_2 - - - - 0.0000000000000000003745 98.0
DYD2_k127_3788151_3 - - - - 0.000006434 55.0
DYD2_k127_3818857_0 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 447.0
DYD2_k127_3822633_0 hmm pf02371 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 593.0
DYD2_k127_3822633_1 SEC-C Motif Domain Protein - - - 0.00000000000000000000000000000000000000000000000000005392 188.0
DYD2_k127_387713_0 Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 458.0
DYD2_k127_387713_1 Transposase IS200 like K07491 - - 0.000000000001046 68.0
DYD2_k127_3960802_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 458.0
DYD2_k127_3960802_1 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 404.0
DYD2_k127_3960802_10 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000001482 274.0
DYD2_k127_3960802_11 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000001165 269.0
DYD2_k127_3960802_12 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000002768 267.0
DYD2_k127_3960802_13 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000001306 220.0
DYD2_k127_3960802_14 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000001446 223.0
DYD2_k127_3960802_15 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000001616 217.0
DYD2_k127_3960802_16 lysyltransferase activity K07027,K14205 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.3.2.3 0.00000000000000000000000000000000000000000000000000000001302 210.0
DYD2_k127_3960802_17 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000003405 210.0
DYD2_k127_3960802_18 LssY C-terminus - - - 0.0000000000000000000000000000000000000000000000003594 187.0
DYD2_k127_3960802_19 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000103 131.0
DYD2_k127_3960802_2 PIF1-like helicase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004556 404.0
DYD2_k127_3960802_20 Protein of unknown function (DUF1761) - - - 0.00000000000000000000000000000006734 129.0
DYD2_k127_3960802_21 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000002269 130.0
DYD2_k127_3960802_22 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000002019 128.0
DYD2_k127_3960802_23 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000576 109.0
DYD2_k127_3960802_24 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000000000000001432 98.0
DYD2_k127_3960802_25 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000000000001889 106.0
DYD2_k127_3960802_26 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.00000000000000001958 88.0
DYD2_k127_3960802_27 Belongs to the UPF0235 family K09131 - - 0.00000000000000002227 83.0
DYD2_k127_3960802_28 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000006994 83.0
DYD2_k127_3960802_29 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000001242 88.0
DYD2_k127_3960802_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 381.0
DYD2_k127_3960802_30 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07642 - 2.7.13.3 0.0000000000000005478 87.0
DYD2_k127_3960802_31 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557,K03215 GO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0019843,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363 2.1.1.190,2.1.1.35 0.00000000000003866 79.0
DYD2_k127_3960802_32 MraZ protein, putative antitoxin-like K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0040007,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.0000000000001996 74.0
DYD2_k127_3960802_33 PFAM Peptidase M16 inactive domain K07263 - - 0.000000000003245 79.0
DYD2_k127_3960802_34 Putative RNA methylase family UPF0020 - - - 0.0000000000155 76.0
DYD2_k127_3960802_35 cell adhesion involved in biofilm formation - - - 0.000000007364 67.0
DYD2_k127_3960802_36 - - - - 0.00000001428 62.0
DYD2_k127_3960802_37 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.00000002548 62.0
DYD2_k127_3960802_38 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000003346 61.0
DYD2_k127_3960802_39 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000001624 53.0
DYD2_k127_3960802_4 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 358.0
DYD2_k127_3960802_40 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000002423 54.0
DYD2_k127_3960802_41 tail collar domain protein K01406,K21449 - 3.4.24.40 0.00001875 59.0
DYD2_k127_3960802_42 COG1404 Subtilisin-like serine proteases K13276 GO:0005575,GO:0005576 - 0.00002873 56.0
DYD2_k127_3960802_43 Domain of unknown function (DUF4868) - - - 0.00005652 55.0
DYD2_k127_3960802_44 Histidine kinase - - - 0.0000946 50.0
DYD2_k127_3960802_45 CHAP domain - - - 0.0002712 53.0
DYD2_k127_3960802_5 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 349.0
DYD2_k127_3960802_6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 329.0
DYD2_k127_3960802_7 ATPases associated with a variety of cellular activities K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000146 274.0
DYD2_k127_3960802_8 phosphotransferase activity, for other substituted phosphate groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000511 278.0
DYD2_k127_3960802_9 Penicillin-binding Protein dimerisation domain K03587,K08384 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001498 287.0
DYD2_k127_4036020_0 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000005199 234.0
DYD2_k127_4036020_1 DDE superfamily endonuclease - - - 0.000000000000000000000003391 102.0
DYD2_k127_4036020_2 Adenylate cyclase - - - 0.000000001982 64.0
DYD2_k127_4110237_0 Transposase, Mutator family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 309.0
DYD2_k127_4616454_0 COG3039 Transposase and inactivated derivatives, IS5 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 498.0
DYD2_k127_4725016_0 Phage P22-like portal protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 467.0
DYD2_k127_4725016_1 Terminase RNaseH-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003977 241.0
DYD2_k127_4782040_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 7.69e-277 853.0
DYD2_k127_4782040_1 component I K01657 - 4.1.3.27 4.185e-237 739.0
DYD2_k127_4782040_2 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 571.0
DYD2_k127_4782040_3 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 556.0
DYD2_k127_4782040_4 conserved protein implicated in secretion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 380.0
DYD2_k127_4782040_5 8-amino-7-oxononanoate synthase K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004618 315.0
DYD2_k127_4782040_7 - - - - 0.00000000000000000000000000000000000000000000000009508 179.0
DYD2_k127_4782040_8 - - - - 0.000000000000000000000000000000000000000003057 156.0
DYD2_k127_4782040_9 resolvase K14060 - - 0.0000001722 53.0
DYD2_k127_4806022_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 586.0
DYD2_k127_4806022_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005412 465.0
DYD2_k127_4806022_2 PFAM UDP-glucose GDP-mannose dehydrogenase family, NAD binding domain K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005162 309.0
DYD2_k127_4806022_3 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 291.0
DYD2_k127_4806022_4 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000004001 232.0
DYD2_k127_4806022_5 Glycosyl transferase, group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000000000000000000000000004096 221.0
DYD2_k127_4806022_6 PFAM Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000005818 220.0
DYD2_k127_4806022_7 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000000000000003164 201.0
DYD2_k127_4806022_8 hydrolase, family 25 - - - 0.000000001719 63.0
DYD2_k127_4806022_9 transferase activity, transferring glycosyl groups - - - 0.000000002279 68.0
DYD2_k127_4887742_0 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.0 1139.0
DYD2_k127_4887742_1 type I restriction-modification system K03427 - 2.1.1.72 1.83e-227 715.0
DYD2_k127_4887742_10 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000002993 177.0
DYD2_k127_4887742_11 Domain of unknown function (DUF1771) - - - 0.00000000000000000000000000000000000000000376 169.0
DYD2_k127_4887742_12 - - - - 0.000000000000000000000000000000000000002228 152.0
DYD2_k127_4887742_13 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.0000000000000000000000000000000000005247 158.0
DYD2_k127_4887742_14 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000006395 143.0
DYD2_k127_4887742_15 phosphoserine phosphatase activity - - - 0.000000000000000000000000000000001564 145.0
DYD2_k127_4887742_16 FKBP-type peptidyl-prolyl cis-trans K01802 - 5.2.1.8 0.000000000000000000000000008027 114.0
DYD2_k127_4887742_17 Serine aminopeptidase, S33 - - - 0.0000000000000000000000003826 116.0
DYD2_k127_4887742_18 Domain of unknown function (DUF4342) - - - 0.0000000000000000002669 90.0
DYD2_k127_4887742_19 - - - - 0.0000000000000000393 87.0
DYD2_k127_4887742_2 Major Facilitator Superfamily K18833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 582.0
DYD2_k127_4887742_20 cheY-homologous receiver domain - - - 0.0000000000000007696 82.0
DYD2_k127_4887742_21 Uncharacterised protein family (UPF0227) K06889 - - 0.000000000000001333 86.0
DYD2_k127_4887742_22 response regulator K07666 - - 0.000000000000001832 81.0
DYD2_k127_4887742_23 - - - - 0.000000000003187 75.0
DYD2_k127_4887742_24 HxlR-like helix-turn-helix - - - 0.00000000009005 66.0
DYD2_k127_4887742_25 Sortase family K07284 - 3.4.22.70 0.0000000001227 71.0
DYD2_k127_4887742_26 HIT domain - - - 0.0000000006271 65.0
DYD2_k127_4887742_27 membrane K09807 - - 0.000000001414 66.0
DYD2_k127_4887742_28 - - - - 0.000001735 54.0
DYD2_k127_4887742_29 Pup-ligase protein K13571 - 6.3.1.19 0.00001548 57.0
DYD2_k127_4887742_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005883 351.0
DYD2_k127_4887742_31 protein conserved in archaea K01733,K02039,K03436,K03524,K03655 - 3.6.4.12,4.2.3.1,6.3.4.15 0.0004255 53.0
DYD2_k127_4887742_4 Protein of unknown function (DUF3048) C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 330.0
DYD2_k127_4887742_5 ATPases associated with a variety of cellular activities K02003,K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 287.0
DYD2_k127_4887742_6 Type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005376 287.0
DYD2_k127_4887742_7 UreE urease accessory protein, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001551 259.0
DYD2_k127_4887742_8 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003518 265.0
DYD2_k127_4887742_9 - - - - 0.00000000000000000000000000000000000000000000000000016 201.0
DYD2_k127_4895721_0 DDE superfamily endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003358 277.0
DYD2_k127_4895721_1 COG3335 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000005347 129.0
DYD2_k127_4944969_0 - - - - 0.00009044 53.0
DYD2_k127_4992224_0 transposase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 499.0
DYD2_k127_5153376_0 Transposase, Mutator family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 311.0
DYD2_k127_5153376_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000001581 73.0
DYD2_k127_5153376_2 Antitoxin component of a toxin-antitoxin (TA) module K19159 GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0040008,GO:0045927,GO:0048518,GO:0050789,GO:0065007,GO:0097351 - 0.0009014 46.0
DYD2_k127_5225570_0 transposase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 497.0
DYD2_k127_532605_0 AIPR protein - - - 8.24e-213 674.0
DYD2_k127_532605_1 Transposase - - - 0.00000000000000000000000000000000000000004232 158.0
DYD2_k127_532605_2 ISXO2-like transposase domain - - - 0.000000000000000000000004717 101.0
DYD2_k127_5369209_0 PFAM Integrase catalytic region K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005941 380.0
DYD2_k127_5369209_1 Transposase - - - 0.0000000000000000000000000001894 115.0
DYD2_k127_5369209_2 response regulator K07689 - - 0.0000000000000000000003301 98.0
DYD2_k127_5369209_3 Two component transcriptional regulator, LuxR family - - - 0.0000000007658 61.0
DYD2_k127_5463016_0 PFAM Integrase core domain K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 302.0
DYD2_k127_5463016_1 Pfam:Methyltransf_26 - - - 0.00008545 51.0
DYD2_k127_5569409_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000009991 72.0
DYD2_k127_5602155_0 Peptidase M15A K03791 - - 0.00000000000000000000000000000001903 131.0
DYD2_k127_5602205_0 Chitinase class I K03791 - - 0.000000000000000000000000000000000000000000000000000000151 201.0
DYD2_k127_5602205_1 Holin of 3TMs, for gene-transfer release - - - 0.000000000000000000000000000004675 124.0
DYD2_k127_5608276_0 SPTR Transposase, IS204 IS1001 IS1096 IS1165 family protein K07485 - - 0.00000000000000000000000000000000000000000000000000001032 198.0
DYD2_k127_5608276_1 Transposase K07485 - - 0.0000000000004931 75.0
DYD2_k127_5670486_0 IS30 family K07482 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 374.0
DYD2_k127_5721067_0 - - - - 0.0000000000000000000000000000000000000000000000009625 183.0
DYD2_k127_578812_0 Pfam C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000006743 143.0
DYD2_k127_592489_0 - - - - 0.0000000000000000000000000000000001837 132.0
DYD2_k127_6022466_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.502e-247 786.0
DYD2_k127_6022466_1 helicase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005468 425.0
DYD2_k127_6022466_2 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000003694 197.0
DYD2_k127_6022466_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000002324 165.0
DYD2_k127_6022466_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000003578 62.0
DYD2_k127_6083724_0 COG3385 FOG Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 536.0
DYD2_k127_6203244_0 ISXO2-like transposase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 339.0
DYD2_k127_6206329_0 6-phosphogluconolactonase activity - - - 0.000000000000000000000000000000000000001244 160.0
DYD2_k127_6206329_1 KR domain - - - 0.000000000005829 68.0
DYD2_k127_630396_1 ISXO2-like transposase domain - - - 0.0000000000006116 68.0
DYD2_k127_630396_2 ISXO2-like transposase domain - - - 0.000000000002069 66.0
DYD2_k127_6505247_0 PFAM Transposase, Rhodopirellula-type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 536.0
DYD2_k127_6505247_1 isomerase activity K18910 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 5.1.3.30,5.1.3.31 0.000000000000000002036 85.0
DYD2_k127_6505247_2 Rhodopirellula transposase family protein - - - 0.000000000000003283 78.0
DYD2_k127_6569643_0 PFAM transposase, IS4 family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 567.0
DYD2_k127_6569643_1 Bacterial transcriptional activator domain - - - 0.0000002918 57.0
DYD2_k127_6573800_0 - - - - 0.000000000000000000000000000000000005529 139.0
DYD2_k127_6573800_1 - - - - 0.000000000000001264 78.0
DYD2_k127_6573800_2 - - - - 0.000000004873 57.0
DYD2_k127_6601277_0 COG NOG15344 non supervised orthologous group - - - 0.0000000000000000000000000000000000464 136.0
DYD2_k127_6601277_2 - - - - 0.0000000000000000006991 87.0
DYD2_k127_6601277_4 - - - - 0.00000000000000007891 80.0
DYD2_k127_6601277_5 - - - - 0.0000000000000001653 81.0
DYD2_k127_6601277_6 - - - - 0.0000000000002624 70.0
DYD2_k127_6601277_7 - - - - 0.000000001334 58.0
DYD2_k127_6644769_0 UDP-4-amino-4-deoxy-L-arabinose aminotransferase - - - 0.000000000000000000000000003222 118.0
DYD2_k127_6644769_2 Nucleotide pyrophosphohydrolase - - - 0.000000000000000007272 87.0
DYD2_k127_6644769_3 Erf family - - - 0.000000000000007712 75.0
DYD2_k127_6644769_4 ERF superfamily - - - 0.000000001794 64.0
DYD2_k127_6644769_6 Elongation factor SelB, winged helix K03833 - - 0.0001945 46.0
DYD2_k127_6747827_0 Phage Tail Collar Domain - - - 0.0000000000001621 82.0
DYD2_k127_814109_0 COG3039 Transposase and inactivated derivatives, IS5 family K07481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 417.0
DYD2_k127_868468_0 Transposase K07481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009658 381.0