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Overview

ID MAG00948
Name DYD3_bin.17
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order UBA11222
Family UBA11222
Genus UBA11222
Species UBA11222 sp030652895
Assembly information
Completeness (%) 88.05
Contamination (%) 0.77
GC content (%) 57.0
N50 (bp) 10,920
Genome size (bp) 2,618,099

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2630

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1068386_0 Methylmalonyl-CoA mutase K14447 - 5.4.99.63 2.887e-315 974.0
DYD3_k127_1068386_1 PAS fold - - - 5.384e-256 825.0
DYD3_k127_1068386_2 Alcohol dehydrogenase GroES-like domain K00001,K14446 - 1.1.1.1,1.3.1.85 3.437e-246 764.0
DYD3_k127_1068386_3 taurine catabolism dioxygenase K18057 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0016491,GO:0016705,GO:0016706,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0046483,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:1901334,GO:1901336,GO:1901360,GO:1901362,GO:1901576 1.14.11.36 0.000000000000000000000000000000000000000000000000000001336 204.0
DYD3_k127_1068386_4 taurine catabolism dioxygenase K03119 - 1.14.11.17 0.0000000000000000000000000000000000000001071 159.0
DYD3_k127_1084599_0 Aminotransferase class-III K00822 - 2.6.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009779 593.0
DYD3_k127_1084599_1 Anti-sigma factor K20148 - 1.13.11.50 0.0000000000000000000281 96.0
DYD3_k127_1084599_2 CHRD domain - - - 0.0000004302 60.0
DYD3_k127_1097960_0 transporter, ATP-binding protein K13926 - - 0.0 1330.0
DYD3_k127_1097960_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006101 541.0
DYD3_k127_1097960_2 Biotin-lipoyl like K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 441.0
DYD3_k127_1097960_3 CoA-transferase family III - - - 0.000000000000006787 77.0
DYD3_k127_1097960_4 CoA-transferase family III - - - 0.000006736 51.0
DYD3_k127_1117494_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01576,K01652 - 2.2.1.6,4.1.1.7 7.179e-208 659.0
DYD3_k127_1117494_1 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009886 619.0
DYD3_k127_1117494_10 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000002205 208.0
DYD3_k127_1117494_11 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000000000004144 181.0
DYD3_k127_1117494_12 cheY-homologous receiver domain K13589 - - 0.000000000000000000000001309 103.0
DYD3_k127_1117494_2 synthetase K18688 - 6.2.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004028 608.0
DYD3_k127_1117494_3 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005052 557.0
DYD3_k127_1117494_4 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003509 546.0
DYD3_k127_1117494_5 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 502.0
DYD3_k127_1117494_6 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 447.0
DYD3_k127_1117494_7 Protein of unknown function (DUF3047) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 346.0
DYD3_k127_1117494_8 protein conserved in bacteria K09987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001307 246.0
DYD3_k127_1117494_9 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000000000000004584 240.0
DYD3_k127_1161113_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 404.0
DYD3_k127_1161113_1 2-hydroxychromene-2-carboxylate isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005021 314.0
DYD3_k127_1161113_2 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0000000000000000003322 87.0
DYD3_k127_1161113_3 Q COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000007538 91.0
DYD3_k127_1161113_4 His Kinase A (phosphoacceptor) domain K07653 - 2.7.13.3 0.0009923 43.0
DYD3_k127_1200697_0 CoA-transferase family III K01796 - 5.1.99.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 490.0
DYD3_k127_1200697_1 CoA-transferase family III K01796 - 5.1.99.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009953 489.0
DYD3_k127_1200697_2 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006138 393.0
DYD3_k127_1200697_3 Belongs to the peptidase S11 family K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 320.0
DYD3_k127_1200697_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000006029 219.0
DYD3_k127_1200697_5 Protein of unknown function (DUF1217) - - - 0.0000000000000000000000000018 125.0
DYD3_k127_1200697_6 Phasin protein - - - 0.0000000000000003512 84.0
DYD3_k127_1210024_0 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006832 499.0
DYD3_k127_1210024_1 Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK K06601 - - 0.000000000000000000000000000000000000000000000000007846 183.0
DYD3_k127_1210024_2 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464 - 0.00000000000000000000000000000000000000000000009404 180.0
DYD3_k127_1210024_3 PFAM flagellar FlaF family protein K06602 - - 0.000000000000000000000006972 104.0
DYD3_k127_1214304_0 Putative zinc binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 524.0
DYD3_k127_1214304_1 Nucleotidyl transferase K00978 - 2.7.7.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000821 401.0
DYD3_k127_1214304_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003213 259.0
DYD3_k127_1214304_3 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000003918 177.0
DYD3_k127_1224038_0 Flavin-binding monooxygenase-like K03379,K21730 - 1.14.13.160,1.14.13.22 1.297e-214 679.0
DYD3_k127_1224038_1 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 537.0
DYD3_k127_1224038_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038,K21977 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 377.0
DYD3_k127_1224038_3 Filamentation induced by cAMP protein fic - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 332.0
DYD3_k127_1224038_4 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 329.0
DYD3_k127_1224038_5 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008041 325.0
DYD3_k127_125239_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 7.345e-273 848.0
DYD3_k127_125239_1 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001471 280.0
DYD3_k127_125239_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000133 157.0
DYD3_k127_125239_3 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000006831 88.0
DYD3_k127_125239_4 PAS domain - - - 0.0000000000000001005 86.0
DYD3_k127_125239_5 - - - - 0.0000000000000006815 84.0
DYD3_k127_1254164_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1080.0
DYD3_k127_1254164_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 3.607e-294 919.0
DYD3_k127_1254164_10 protein conserved in bacteria K09938 - - 0.00005288 55.0
DYD3_k127_1254164_2 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009801 432.0
DYD3_k127_1254164_3 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 359.0
DYD3_k127_1254164_4 AI-2E family transporter K03548 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 329.0
DYD3_k127_1254164_5 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 299.0
DYD3_k127_1254164_6 Belongs to the DnaA family - - - 0.000000000000000000000000000000000000000000000000000000000194 212.0
DYD3_k127_1254164_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000000000000000000000000000000004915 184.0
DYD3_k127_1254164_8 COG2913 Small protein A (tmRNA-binding) - - - 0.000000000000000000000003924 104.0
DYD3_k127_1254164_9 GDP-mannose 4,6 dehydratase K01711 - 4.2.1.47 0.000000000000001447 81.0
DYD3_k127_1268757_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000004271 232.0
DYD3_k127_1268757_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000005098 187.0
DYD3_k127_1268757_2 Protein of unknown function (DUF1109) - - - 0.000000000000000000000000000000000000000000001767 172.0
DYD3_k127_1268757_3 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000002652 89.0
DYD3_k127_1272072_0 Acyl-CoA dehydrogenase, C-terminal domain K14448 - 1.3.8.12 1.086e-251 787.0
DYD3_k127_1272072_1 acetyltransferase - - - 0.000000000000000000007215 96.0
DYD3_k127_1273885_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1422.0
DYD3_k127_1273885_1 AcrB/AcrD/AcrF family K18989 - - 0.0 1105.0
DYD3_k127_1273885_2 Sodium/hydrogen exchanger family K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 563.0
DYD3_k127_1273885_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K18990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 312.0
DYD3_k127_1273885_4 transglycosylase - - - 0.000000000000000000000000000000000000000000000000000298 196.0
DYD3_k127_1273885_5 Flavin-binding monooxygenase-like K03379 GO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0016491,GO:0016705,GO:0016709,GO:0055114 1.14.13.22 0.00000000000444 68.0
DYD3_k127_1362205_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 526.0
DYD3_k127_1362205_1 COG1960 Acyl-CoA dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 377.0
DYD3_k127_1362205_2 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000008644 236.0
DYD3_k127_1362205_3 Thioredoxin-like [2Fe-2S] ferredoxin K00127 - - 0.0000000000000000000000000000000000000000000000000000006098 196.0
DYD3_k127_1362205_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000003583 164.0
DYD3_k127_1362205_5 Gaf domain - - - 0.000000000000000000000000000000000000000001726 160.0
DYD3_k127_1362205_6 Prokaryotic homologs of the JAB domain - - - 0.0001269 48.0
DYD3_k127_1389547_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 529.0
DYD3_k127_1389547_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951 507.0
DYD3_k127_1389547_10 PFAM Pyridoxamine 5'-phosphate oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000155 219.0
DYD3_k127_1389547_11 Lipid A 3-O-deacylase (PagL) - - - 0.0000000000000000000000000000000000000000003078 164.0
DYD3_k127_1389547_12 invasion associated locus B - - - 0.000000000000000000000000000000000000006926 151.0
DYD3_k127_1389547_13 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000001798 117.0
DYD3_k127_1389547_14 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.00000009744 63.0
DYD3_k127_1389547_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009644 486.0
DYD3_k127_1389547_3 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005781 437.0
DYD3_k127_1389547_4 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 420.0
DYD3_k127_1389547_5 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003822 397.0
DYD3_k127_1389547_6 methyltransferase activity K21310 - 2.1.1.334 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008368 280.0
DYD3_k127_1389547_7 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309,K11102,K11103 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001212 274.0
DYD3_k127_1389547_8 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005307 254.0
DYD3_k127_1389547_9 CarD-like/TRCF domain K07736 - - 0.0000000000000000000000000000000000000000000000000000000000000007727 232.0
DYD3_k127_141432_0 Aminotransferase class-V K00281,K00283 - 1.4.4.2 1.991e-255 796.0
DYD3_k127_141432_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 572.0
DYD3_k127_141432_2 PFAM glycine cleavage T protein (aminomethyl transferase) K00605 GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0032991,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 442.0
DYD3_k127_141432_3 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 302.0
DYD3_k127_141432_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000276 173.0
DYD3_k127_141432_5 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000000000000000000000000000000000000000001374 173.0
DYD3_k127_141432_6 Pilus formation protein N terminal region - - - 0.00000000000000000000001521 108.0
DYD3_k127_143597_0 His Kinase A (phosphoacceptor) domain K13587 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 600.0
DYD3_k127_143597_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00001857 47.0
DYD3_k127_1448505_0 major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 419.0
DYD3_k127_1448505_1 Glycosyl hydrolase family 46 K01233 - 3.2.1.132 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 327.0
DYD3_k127_1448505_2 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000002587 119.0
DYD3_k127_1448505_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000533 119.0
DYD3_k127_1448505_4 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K18688 - 6.2.1.42 0.0003276 44.0
DYD3_k127_146419_0 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 361.0
DYD3_k127_146419_1 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 360.0
DYD3_k127_146419_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 331.0
DYD3_k127_146419_3 Chaperone SurA K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006164 289.0
DYD3_k127_146419_4 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000638 240.0
DYD3_k127_146419_5 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000007925 108.0
DYD3_k127_148436_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 467.0
DYD3_k127_148436_1 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000005586 239.0
DYD3_k127_148436_2 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000288 233.0
DYD3_k127_148436_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000003545 167.0
DYD3_k127_1491625_0 GMP synthase C terminal domain K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 433.0
DYD3_k127_1491625_1 L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 349.0
DYD3_k127_1491625_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.0000000000000000000000000000000001716 136.0
DYD3_k127_1491625_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000003263 129.0
DYD3_k127_1491625_4 - - - - 0.000000000001888 73.0
DYD3_k127_1492943_0 AcrB/AcrD/AcrF family - - - 3.377e-195 616.0
DYD3_k127_1492943_1 Copper binding periplasmic protein CusF K07798,K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 425.0
DYD3_k127_1492943_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002982 289.0
DYD3_k127_1492943_3 YtkA-like - - - 0.000000000000000000000001367 108.0
DYD3_k127_1521218_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004563 549.0
DYD3_k127_1521218_1 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 543.0
DYD3_k127_1521218_2 Elongation factor SelB, winged helix - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 536.0
DYD3_k127_1521218_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 344.0
DYD3_k127_1521218_4 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.000000000000000000000003595 103.0
DYD3_k127_1544286_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 466.0
DYD3_k127_1544286_1 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 357.0
DYD3_k127_1544286_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000003486 173.0
DYD3_k127_1544286_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000000000003839 148.0
DYD3_k127_1544286_4 Ribosomal L27 protein K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000223 141.0
DYD3_k127_1555296_0 Flavin-binding monooxygenase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 554.0
DYD3_k127_1555296_1 Glycosyl transferases group 1 K12989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006292 526.0
DYD3_k127_1555296_10 Transcriptional regulator - - - 0.00000002687 58.0
DYD3_k127_1555296_2 PFAM Glycoside hydrolase 15-related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006047 471.0
DYD3_k127_1555296_3 And related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 458.0
DYD3_k127_1555296_4 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 344.0
DYD3_k127_1555296_5 Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta-cleavage pathway for the degradation of aromatic compounds K01666 - 4.1.3.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 328.0
DYD3_k127_1555296_6 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 305.0
DYD3_k127_1555296_7 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004064 278.0
DYD3_k127_1555296_8 SnoaL-like domain - - - 0.000000000000000000000000000000000000001318 151.0
DYD3_k127_1555296_9 - - - - 0.0000000000000000006669 91.0
DYD3_k127_1568211_0 Sulfotransferase family K01014 - 2.8.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 349.0
DYD3_k127_1568211_1 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000000000000000001278 227.0
DYD3_k127_1578120_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 6.942e-196 618.0
DYD3_k127_1578120_1 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007612 447.0
DYD3_k127_1578120_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 351.0
DYD3_k127_1578120_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005692 282.0
DYD3_k127_1578120_4 Putative methyltransferase K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000009328 211.0
DYD3_k127_1578120_5 Helix-turn-helix - - - 0.00000000000000000000000000000000000000000000000007493 181.0
DYD3_k127_1578120_6 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000006063 143.0
DYD3_k127_1578120_7 - - - - 0.0000000000000000000000006366 108.0
DYD3_k127_1598491_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 1.637e-307 967.0
DYD3_k127_1598491_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 2.21e-241 753.0
DYD3_k127_1598491_10 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000006948 110.0
DYD3_k127_1598491_12 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.00000000000006845 74.0
DYD3_k127_1598491_13 - - - - 0.000000000000386 78.0
DYD3_k127_1598491_14 PFAM Pentapeptide repeats (8 copies) - - - 0.000958 45.0
DYD3_k127_1598491_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 9.024e-238 743.0
DYD3_k127_1598491_3 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 434.0
DYD3_k127_1598491_4 TIGRFAM TIGR00645 family protein - - - 0.00000000000000000000000000000000000000000000000000000000001152 211.0
DYD3_k127_1598491_5 UPF0761 membrane protein K07058 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000549 211.0
DYD3_k127_1598491_6 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.000000000000000000000000000000000000000000000000000005305 194.0
DYD3_k127_1598491_7 GMC oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000003629 186.0
DYD3_k127_1598491_8 FR47-like protein K03823 - 2.3.1.183 0.000000000000000000000000000000000000000000000000008242 186.0
DYD3_k127_1598491_9 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000001141 126.0
DYD3_k127_1612640_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 398.0
DYD3_k127_1612640_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004636 374.0
DYD3_k127_1612640_2 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005766 278.0
DYD3_k127_1612640_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000004888 148.0
DYD3_k127_1647209_0 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 424.0
DYD3_k127_1647209_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 393.0
DYD3_k127_1647209_2 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000856 344.0
DYD3_k127_1647209_3 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 317.0
DYD3_k127_1647209_4 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 288.0
DYD3_k127_1647209_5 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072,K11076 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000003113 257.0
DYD3_k127_1647209_6 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000142 249.0
DYD3_k127_1647209_7 SnoaL-like domain - - - 0.0000000000000004548 83.0
DYD3_k127_1657128_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 9.785e-245 772.0
DYD3_k127_1657128_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.212e-244 766.0
DYD3_k127_1657128_11 Aldose 1-epimerase K01785 - 5.1.3.3 0.00002778 55.0
DYD3_k127_1657128_2 pfkB family carbohydrate kinase K00847,K00856 - 2.7.1.20,2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 410.0
DYD3_k127_1657128_3 NAD-dependent epimerase dehydratase K01784,K08678,K12454 - 4.1.1.35,5.1.3.10,5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 337.0
DYD3_k127_1657128_4 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 312.0
DYD3_k127_1657128_5 Pentapeptide repeats (8 copies) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 295.0
DYD3_k127_1657128_6 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002144 271.0
DYD3_k127_1657128_7 peptidase S1 and S6, chymotrypsin Hap - - - 0.000000000000000000000000000000000000000000000000000000003778 209.0
DYD3_k127_1657128_8 PFAM IS1 transposase - - - 0.00000000000000000000000000000000000000005672 152.0
DYD3_k127_1657128_9 integral membrane protein - - - 0.000000000000000000000000000000000000009111 151.0
DYD3_k127_1691789_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1165.0
DYD3_k127_1691789_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 478.0
DYD3_k127_1691789_2 xylanase chitin deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 334.0
DYD3_k127_1691789_3 NADH dehydrogenase NAD(P)H nitroreductase K09019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005626 279.0
DYD3_k127_1691789_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000008442 244.0
DYD3_k127_1691789_5 enoyl-CoA hydratase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000001653 222.0
DYD3_k127_1691789_6 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.00000000000000000000000000008382 118.0
DYD3_k127_1691789_7 Ribbon-helix-helix protein, copG family - - - 0.00000695 52.0
DYD3_k127_1801727_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 5.718e-256 797.0
DYD3_k127_1801727_1 MiaB-like tRNA modifying enzyme K18707 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035598,GO:0035600,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050497,GO:0071704,GO:0090304,GO:1901360 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005599 541.0
DYD3_k127_1801727_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 410.0
DYD3_k127_1801727_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 312.0
DYD3_k127_1801727_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000000006285 158.0
DYD3_k127_1804320_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0016020,GO:0016787,GO:0019538,GO:0033218,GO:0042277,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 3.4.11.2 2.692e-302 950.0
DYD3_k127_1804320_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 4.004e-229 728.0
DYD3_k127_1804320_10 Ring hydroxylating beta subunit K15750 - 1.14.12.18 0.000000000000000000000000000000000000000000000000000000000000003447 222.0
DYD3_k127_1804320_11 protein conserved in bacteria K05805 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000104 162.0
DYD3_k127_1804320_12 PFAM Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000001122 160.0
DYD3_k127_1804320_13 - - - - 0.00000000000007472 81.0
DYD3_k127_1804320_14 - - - - 0.0000000000001472 72.0
DYD3_k127_1804320_15 - - - - 0.000000002213 61.0
DYD3_k127_1804320_16 addiction module toxin, RelE StbE family - - - 0.0000931 46.0
DYD3_k127_1804320_2 Aminotransferase class-III K12256 - 2.6.1.113 2.141e-201 635.0
DYD3_k127_1804320_3 PFAM Binding-protein-dependent transport system inner membrane component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 625.0
DYD3_k127_1804320_4 Ring hydroxylating alpha subunit (catalytic domain) K03268,K05708 - 1.14.12.11,1.14.12.19,1.14.12.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008721 569.0
DYD3_k127_1804320_5 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 478.0
DYD3_k127_1804320_6 extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 400.0
DYD3_k127_1804320_7 KR domain K00019 - 1.1.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 327.0
DYD3_k127_1804320_8 Extradiol ring-cleavage dioxygenase, class III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 319.0
DYD3_k127_1804320_9 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001228 242.0
DYD3_k127_1873823_0 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 564.0
DYD3_k127_1873823_1 Enoyl-CoA hydratase/isomerase K08299 - 4.2.1.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 388.0
DYD3_k127_1873823_2 Nucleoside H+ symporter K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006769 310.0
DYD3_k127_1873823_3 Alpha beta hydrolase K14731 - 3.1.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 303.0
DYD3_k127_1873823_4 Alpha beta hydrolase K14731 - 3.1.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 293.0
DYD3_k127_1873823_5 carbonate dehydratase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007168 244.0
DYD3_k127_1873823_6 metal-binding protein - - - 0.000000000000000000000000000000002577 132.0
DYD3_k127_1873823_7 Cytochrome P450 - - - 0.0001268 44.0
DYD3_k127_1911498_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 5.724e-238 744.0
DYD3_k127_1911498_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 507.0
DYD3_k127_1911498_10 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000003316 210.0
DYD3_k127_1911498_11 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000000000000000000576 188.0
DYD3_k127_1911498_12 PFAM Dopa 4,5-dioxygenase family K10253 - - 0.0000000000000000000000000000000488 132.0
DYD3_k127_1911498_13 FecR protein - - - 0.000000000000000257 91.0
DYD3_k127_1911498_2 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 493.0
DYD3_k127_1911498_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 419.0
DYD3_k127_1911498_4 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 404.0
DYD3_k127_1911498_5 COG0625 Glutathione S-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 387.0
DYD3_k127_1911498_6 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 332.0
DYD3_k127_1911498_7 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 327.0
DYD3_k127_1911498_8 Integral membrane protein TerC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 293.0
DYD3_k127_1911498_9 Biotin-lipoyl like K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001542 264.0
DYD3_k127_1913460_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 7.951e-244 757.0
DYD3_k127_1913460_1 PAS fold - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 590.0
DYD3_k127_1913460_2 reductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 404.0
DYD3_k127_1913460_3 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 349.0
DYD3_k127_1913460_4 PTS system fructose IIA component K02793 - 2.7.1.191 0.00000000000000000000000000000000000000000000000000000001313 200.0
DYD3_k127_1913460_5 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000001365 169.0
DYD3_k127_1913460_6 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000001514 159.0
DYD3_k127_1913460_7 PTS HPr component phosphorylation site K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006808,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0044424,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702 - 0.000000000000000000000002069 107.0
DYD3_k127_1913460_8 glycolate oxidase iron-sulfur subunit K11473 - - 0.0000000001119 62.0
DYD3_k127_1954674_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1307.0
DYD3_k127_1954674_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00612 - - 4.759e-311 961.0
DYD3_k127_1954674_10 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.000000000000000000000000000000000000000000000000000000000000004463 224.0
DYD3_k127_1954674_11 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000007116 186.0
DYD3_k127_1954674_12 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.00000000000000000000000000000000000000000000007608 174.0
DYD3_k127_1954674_13 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000008925 158.0
DYD3_k127_1954674_14 Bacterial SH3 domain K01876 - 6.1.1.12 0.0000000000000000000000000000000000000009757 154.0
DYD3_k127_1954674_15 - - - - 0.000000000000000000000000000000000000004636 149.0
DYD3_k127_1954674_16 Protein of unknown function (DUF3035) - - - 0.0000000000000000000000000000000000001542 147.0
DYD3_k127_1954674_17 - - - - 0.0000000000000000000000000000000001553 141.0
DYD3_k127_1954674_18 - - - - 0.000000000000000005563 83.0
DYD3_k127_1954674_19 Polyketide cyclase dehydrase - - - 0.00000000000001346 80.0
DYD3_k127_1954674_2 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 8.613e-249 777.0
DYD3_k127_1954674_20 Ankyrin repeat - - - 0.00000000002217 72.0
DYD3_k127_1954674_21 Flagellar basal body rod protein - - - 0.0000002308 58.0
DYD3_k127_1954674_3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 6.484e-226 715.0
DYD3_k127_1954674_4 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 473.0
DYD3_k127_1954674_5 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 480.0
DYD3_k127_1954674_6 Stimulus-sensing domain K14980 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 477.0
DYD3_k127_1954674_7 Phosphoglucose isomerase K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 470.0
DYD3_k127_1954674_8 Peptidase M16 inactive domain K07263,K07623 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 451.0
DYD3_k127_1954674_9 Transcriptional regulatory protein, C terminal K14981 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 369.0
DYD3_k127_196654_0 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000000000000000000000000000000001553 240.0
DYD3_k127_196654_1 Putative zinc- or iron-chelating domain K09160 - - 0.00000000000000000000000000000000000000000000000000000006114 198.0
DYD3_k127_196654_2 COG2202 FOG PAS PAC domain - - - 0.000000000000000000000000000000000000001883 163.0
DYD3_k127_1967476_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K15778 - 5.4.2.2,5.4.2.8 3.48e-233 730.0
DYD3_k127_1967476_1 COG1062 Zn-dependent alcohol dehydrogenases, class III K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005142 557.0
DYD3_k127_1967476_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000001227 139.0
DYD3_k127_1967476_11 - - - - 0.0000000000000000000004522 98.0
DYD3_k127_1967476_12 Protein of unknown function (DUF1289) K06938 - - 0.0000000000006027 71.0
DYD3_k127_1967476_2 COG1062 Zn-dependent alcohol dehydrogenases, class III K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005318 540.0
DYD3_k127_1967476_3 alcohol dehydrogenase (NAD) activity K00001,K00121,K02267,K13980,K18857 GO:0000302,GO:0001101,GO:0001666,GO:0003674,GO:0003824,GO:0004022,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009410,GO:0009413,GO:0009414,GO:0009415,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009744,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0031000,GO:0032355,GO:0033993,GO:0034285,GO:0036270,GO:0036293,GO:0042221,GO:0042493,GO:0042542,GO:0042802,GO:0042803,GO:0043279,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046686,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0055114,GO:0065007,GO:0070482,GO:0071944,GO:0080134,GO:0080135,GO:0097305,GO:1900037,GO:1900039,GO:1901698,GO:1901700 1.1.1.1,1.1.1.284 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 539.0
DYD3_k127_1967476_4 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 304.0
DYD3_k127_1967476_5 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000001323 227.0
DYD3_k127_1967476_6 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 - 3.1.4.53 0.0000000000000000000000000000000000000000000000000000000000002117 220.0
DYD3_k127_1967476_7 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000000004338 206.0
DYD3_k127_1967476_8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00065 - 1.1.1.127 0.000000000000000000000000000000000000000000000000000008541 198.0
DYD3_k127_1967476_9 gag-polyprotein putative aspartyl protease K06985 - - 0.00000000000000000000000000000000000000000000000000003682 196.0
DYD3_k127_2037651_0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 2.365e-307 955.0
DYD3_k127_2037651_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 2.372e-306 949.0
DYD3_k127_2037651_10 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 344.0
DYD3_k127_2037651_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03941 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 310.0
DYD3_k127_2037651_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009352 274.0
DYD3_k127_2037651_13 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K03943 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004383 268.0
DYD3_k127_2037651_14 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000043 259.0
DYD3_k127_2037651_15 COG0340 Biotin-(acetyl-CoA carboxylase) ligase K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000000000002016 252.0
DYD3_k127_2037651_16 methylmalonyl-CoA epimerase K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000006154 224.0
DYD3_k127_2037651_17 probably involved in intracellular septation K06190 - - 0.00000000000000000000000000000000000000000000000000000000002806 211.0
DYD3_k127_2037651_18 Ring hydroxylating beta subunit - - - 0.00000000000000000000000000000000000000000000001414 176.0
DYD3_k127_2037651_19 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000002902 162.0
DYD3_k127_2037651_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 3.789e-252 781.0
DYD3_k127_2037651_20 Protein of unknown function (DUF423) - - - 0.0000000000000000000000000000000000006665 143.0
DYD3_k127_2037651_21 Protein of unknown function (DUF559) - - - 0.000000000000000000000000000000000001095 145.0
DYD3_k127_2037651_22 Protein of unknown function (DUF1467) - - - 0.000000000000001501 81.0
DYD3_k127_2037651_3 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 2.315e-245 769.0
DYD3_k127_2037651_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 1.246e-220 687.0
DYD3_k127_2037651_5 Zn-dependent metallo-hydrolase RNA specificity domain K12574 - - 3.349e-217 687.0
DYD3_k127_2037651_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 607.0
DYD3_k127_2037651_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 497.0
DYD3_k127_2037651_8 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00499,K16319 - 1.14.12.1,1.14.15.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 417.0
DYD3_k127_2037651_9 Acetyl-CoA hydrolase/transferase N-terminal domain K18122 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 358.0
DYD3_k127_20627_0 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 585.0
DYD3_k127_20627_1 Fumarylacetoacetate (FAA) hydrolase family K05921 - 4.1.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 490.0
DYD3_k127_20627_10 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000001123 62.0
DYD3_k127_20627_2 Domain of unknown function (DUF4139) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004695 385.0
DYD3_k127_20627_3 PFAM CoA-transferase family III K07544,K07749 - 2.8.3.15,2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 355.0
DYD3_k127_20627_4 PFAM CoA-transferase family III K07544,K07749 - 2.8.3.15,2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 351.0
DYD3_k127_20627_5 short-chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000199 285.0
DYD3_k127_20627_6 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002489 240.0
DYD3_k127_20627_7 Bacterial-like globin K06886 - - 0.000000000000000000000000000000000000000000000000000000000000001421 221.0
DYD3_k127_20627_8 transcriptional regulator K13771 - - 0.00000000000000000000000000000000000000000000000000000001011 201.0
DYD3_k127_20627_9 Protein of unknown function (DUF3617) - - - 0.0000000000000000005463 97.0
DYD3_k127_2081928_0 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 351.0
DYD3_k127_2081928_1 F420-dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 292.0
DYD3_k127_2081928_2 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007352 274.0
DYD3_k127_2081928_3 Sulphur transport K07112 - - 0.000000000000000000000000000000000000000000000001494 179.0
DYD3_k127_2081928_4 transporter component K07112 - - 0.0000000000000000000007701 96.0
DYD3_k127_2168398_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 1.154e-269 849.0
DYD3_k127_2168398_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006688 532.0
DYD3_k127_2168398_10 Essential cell division protein K03589 - - 0.000000000000000000000000000000000000000000000000000000001284 213.0
DYD3_k127_2168398_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 505.0
DYD3_k127_2168398_3 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 464.0
DYD3_k127_2168398_4 aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007409 450.0
DYD3_k127_2168398_5 D-ala D-ala ligase N-terminus K00075,K01921 - 1.3.1.98,6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004295 402.0
DYD3_k127_2168398_6 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 379.0
DYD3_k127_2168398_7 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 304.0
DYD3_k127_2168398_8 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 308.0
DYD3_k127_2168398_9 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000008569 232.0
DYD3_k127_2221785_0 Flavin-binding monooxygenase-like - - - 1.583e-272 851.0
DYD3_k127_2221785_1 Flavin-binding monooxygenase-like - - - 5.767e-257 805.0
DYD3_k127_2221785_10 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 364.0
DYD3_k127_2221785_11 Belongs to the mandelate racemase muconate lactonizing enzyme family K19802 - 5.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 362.0
DYD3_k127_2221785_12 Beta-lactamase superfamily domain K06136 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004795 357.0
DYD3_k127_2221785_13 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009239 359.0
DYD3_k127_2221785_14 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009886 338.0
DYD3_k127_2221785_15 Serine acetyltransferase, N-terminal K00640 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009314,GO:0009333,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 334.0
DYD3_k127_2221785_16 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 - 1.3.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 331.0
DYD3_k127_2221785_17 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007467 281.0
DYD3_k127_2221785_18 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001751 264.0
DYD3_k127_2221785_19 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000001141 192.0
DYD3_k127_2221785_2 Sulfite reductase K00381 - 1.8.1.2 4.489e-256 799.0
DYD3_k127_2221785_20 MlaA lipoprotein K04754 - - 0.00000000000000000000000000000000000000000001155 178.0
DYD3_k127_2221785_21 TadE-like protein K02651 - - 0.00000000000000000000000000000000000000002286 158.0
DYD3_k127_2221785_22 Psort location Extracellular, score - - - 0.00000000000000000000000000000000000001163 160.0
DYD3_k127_2221785_23 conserved protein ucp030820 - - - 0.00000000000000000000000000000000000009275 149.0
DYD3_k127_2221785_24 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000006576 141.0
DYD3_k127_2221785_25 TadE-like protein - - - 0.00000000000000000000000000000002759 132.0
DYD3_k127_2221785_26 Staphylococcal nuclease homologue - - - 0.0000000000000000000000000000001431 132.0
DYD3_k127_2221785_27 Copper chaperone PCu(A)C K09796 - - 0.0000000000000000000000001479 114.0
DYD3_k127_2221785_28 Coenzyme PQQ synthesis protein D (PqqD) K06138 - - 0.0000000000000000001482 91.0
DYD3_k127_2221785_29 Protein of unknown function (DUF2849) - - - 0.00000000009005 66.0
DYD3_k127_2221785_3 Flavin-binding monooxygenase-like - - - 1.366e-254 800.0
DYD3_k127_2221785_4 CHASE2 K01768 - 4.6.1.1 8.142e-215 690.0
DYD3_k127_2221785_5 Transposase DDE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 481.0
DYD3_k127_2221785_6 Belongs to the radical SAM superfamily. PqqE family K06139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 474.0
DYD3_k127_2221785_7 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 438.0
DYD3_k127_2221785_8 NMT1/THI5 like K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 412.0
DYD3_k127_2221785_9 belongs to the aldehyde dehydrogenase family K00128,K06447 - 1.2.1.3,1.2.1.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 400.0
DYD3_k127_2238164_0 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008025 307.0
DYD3_k127_2238164_1 phosphoserine phosphatase K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000004504 229.0
DYD3_k127_2254991_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K01665 - 2.6.1.85,4.1.3.27 1.931e-195 622.0
DYD3_k127_2254991_1 Amidohydrolase family K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 544.0
DYD3_k127_2254991_10 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000007445 237.0
DYD3_k127_2254991_11 - - - - 0.0000000000000000000000000000000000000000000000004676 190.0
DYD3_k127_2254991_12 Thiol disulfide interchange protein K04084,K08344 - 1.8.1.8 0.00000000000000000000000000000000000004977 151.0
DYD3_k127_2254991_13 Iron-binding zinc finger CDGSH type - - - 0.000000000000000000000000000000001871 130.0
DYD3_k127_2254991_14 - - - - 0.000000000000000001864 92.0
DYD3_k127_2254991_15 Protein of unknown function (DUF3126) - - - 0.0000000000000001959 81.0
DYD3_k127_2254991_2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 507.0
DYD3_k127_2254991_3 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 461.0
DYD3_k127_2254991_4 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 436.0
DYD3_k127_2254991_5 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 404.0
DYD3_k127_2254991_6 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 377.0
DYD3_k127_2254991_7 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000397 263.0
DYD3_k127_2254991_8 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000001365 260.0
DYD3_k127_2254991_9 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000004223 236.0
DYD3_k127_2255562_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00410,K00412 - - 1.221e-211 663.0
DYD3_k127_2255562_1 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006245 582.0
DYD3_k127_2255562_10 HpcH/HpaI aldolase/citrate lyase family K08691 GO:0003674,GO:0003824,GO:0005488,GO:0016829,GO:0016830,GO:0016833,GO:0043167,GO:0043169,GO:0046872,GO:0047777,GO:0050083 4.1.3.24,4.1.3.25 0.00000000000000000000000001001 109.0
DYD3_k127_2255562_11 PFAM ring hydroxylating dioxygenase, alpha subunit - - - 0.00000000000007322 73.0
DYD3_k127_2255562_12 Dehydrogenase K00114,K17760,K20936,K21676,K22473 - 1.1.2.8,1.1.2.9,1.1.5.5,1.1.9.1,1.17.2.2 0.0000004941 56.0
DYD3_k127_2255562_2 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 449.0
DYD3_k127_2255562_3 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 445.0
DYD3_k127_2255562_4 PFAM 2-nitropropane dioxygenase NPD K00459,K02371 - 1.13.12.16,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006916 375.0
DYD3_k127_2255562_5 Cytochrome C1 family K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 321.0
DYD3_k127_2255562_6 Transcriptional - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002825 269.0
DYD3_k127_2255562_7 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000001422 259.0
DYD3_k127_2255562_8 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000007535 216.0
DYD3_k127_2255562_9 nucleic-acid-binding protein containing a Zn-ribbon K07068 - - 0.00000000000000000000000000000000000000000000001841 174.0
DYD3_k127_227079_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.388e-272 845.0
DYD3_k127_227079_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.698e-257 812.0
DYD3_k127_227079_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 7.967e-253 785.0
DYD3_k127_227079_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 396.0
DYD3_k127_227079_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 334.0
DYD3_k127_227079_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000186 195.0
DYD3_k127_227079_6 Domain of unknown function (DUF4399) - - - 0.0000000000000000000000000000000000000000000000000005039 187.0
DYD3_k127_227079_7 flavin adenine dinucleotide binding - - - 0.000000000000000000000000000000000000000000005377 172.0
DYD3_k127_227079_8 Produces ATP from ADP in the presence of a proton gradient across the membrane K02113,K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000000000000000000189 150.0
DYD3_k127_227079_9 transcriptional regulator - - - 0.000000000005811 68.0
DYD3_k127_2290696_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.204e-307 954.0
DYD3_k127_2290696_1 Cobalamin biosynthesis protein CobT VWA domain K09883 - 6.6.1.2 8.983e-250 786.0
DYD3_k127_2290696_10 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006304 312.0
DYD3_k127_2290696_11 COG0811 Biopolymer transport proteins K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004304 290.0
DYD3_k127_2290696_12 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007771 281.0
DYD3_k127_2290696_13 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000004464 229.0
DYD3_k127_2290696_14 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000008506 200.0
DYD3_k127_2290696_15 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000001648 204.0
DYD3_k127_2290696_16 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.000000000000000000000000000000000000000000000000001395 192.0
DYD3_k127_2290696_17 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000002337 189.0
DYD3_k127_2290696_18 molecular chaperone - - - 0.000000000000000000000000000000000000000000000007785 178.0
DYD3_k127_2290696_19 biopolymer transport protein K03559,K03560 - - 0.0000000000000000000000000000000000000000000004718 171.0
DYD3_k127_2290696_2 Involved in the TonB-independent uptake of proteins K03641 - - 9.143e-194 613.0
DYD3_k127_2290696_20 TIGRFAM protein TolA - - - 0.00000000000000000000000000000000000000001747 164.0
DYD3_k127_2290696_21 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000000000005125 154.0
DYD3_k127_2290696_22 BolA-like protein K05527,K22066 GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0071704,GO:0097428,GO:0106035,GO:1901564 - 0.00000000000000000000000002361 111.0
DYD3_k127_2290696_3 Cobaltochelatase CobS subunit N terminal K09882 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009091 535.0
DYD3_k127_2290696_4 Transporter associated domain K03699 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 511.0
DYD3_k127_2290696_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 501.0
DYD3_k127_2290696_6 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 451.0
DYD3_k127_2290696_7 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 344.0
DYD3_k127_2290696_8 TIGRFAM DNA-binding regulatory protein, YebC PmpR family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 331.0
DYD3_k127_2290696_9 Pterin binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003406 319.0
DYD3_k127_231382_0 Glutamate synthase central domain K00265 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.13,1.4.1.14 0.0 1033.0
DYD3_k127_231382_1 Luciferase-like monooxygenase K14733 - 1.14.13.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008374 447.0
DYD3_k127_231382_2 surface antigen - - - 0.00000000000000000000000000000002609 136.0
DYD3_k127_231382_3 methyltransferase - - - 0.000000000000000000000002984 113.0
DYD3_k127_231382_4 glyoxalase III activity K16260 - - 0.000000000000000000002989 100.0
DYD3_k127_2346310_0 His Kinase A (phosphoacceptor) domain K20971 - - 0.0 1385.0
DYD3_k127_2346310_1 Acetamidase/Formamidase family K01455 - 3.5.1.49 1.1e-245 762.0
DYD3_k127_2346310_10 Putative regulatory protein - - - 0.0000000000000000000000000000000000000009193 151.0
DYD3_k127_2346310_11 Filamentation induced by cAMP protein fic - - - 0.0000000000000000000000000000000000001952 146.0
DYD3_k127_2346310_12 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.00002083 47.0
DYD3_k127_2346310_2 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K11959 - - 3.175e-242 752.0
DYD3_k127_2346310_3 Branched-chain amino acid transport system / permease component K11961 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 532.0
DYD3_k127_2346310_4 Branched-chain amino acid transport system / permease component K11960 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000764 481.0
DYD3_k127_2346310_5 TIGRFAM urea ABC transporter, ATP-binding protein UrtD K11962 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 377.0
DYD3_k127_2346310_6 Phage integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 334.0
DYD3_k127_2346310_7 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008059 338.0
DYD3_k127_2346310_8 TIGRFAM urea ABC transporter, ATP-binding protein UrtE K11963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 328.0
DYD3_k127_2346310_9 Protein of unknown function DUF45 K07043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002059 251.0
DYD3_k127_2353565_0 Glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1197.0
DYD3_k127_2353565_1 Glutamate synthase, NADH NADPH, small subunit K00266 - 1.4.1.13,1.4.1.14 8.956e-232 724.0
DYD3_k127_2353565_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000001722 64.0
DYD3_k127_2377589_0 Glycosyl hydrolase family 3 N terminal domain K01207,K05349 - 3.2.1.21,3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 374.0
DYD3_k127_2377589_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000002464 194.0
DYD3_k127_2377589_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000004939 170.0
DYD3_k127_2377589_3 Sporulation related domain - - - 0.0000000000000000000000001922 119.0
DYD3_k127_2416684_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1112.0
DYD3_k127_2416684_1 Biotin carboxylase C-terminal domain K01965 - 6.4.1.3 6.657e-293 912.0
DYD3_k127_2416684_10 short-chain dehydrogenase reductase SDR K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 373.0
DYD3_k127_2416684_11 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006495 307.0
DYD3_k127_2416684_12 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 297.0
DYD3_k127_2416684_13 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 287.0
DYD3_k127_2416684_14 Domain of unknown function (DUF1732) - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001996 274.0
DYD3_k127_2416684_15 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004371 274.0
DYD3_k127_2416684_16 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000001428 250.0
DYD3_k127_2416684_17 KR domain K00065 - 1.1.1.127 0.00000000000000000000000000000000000000000000000000000000000000000002874 240.0
DYD3_k127_2416684_18 KR domain K00065 - 1.1.1.127 0.000000000000000000000000000000000000000000000000000000000000000006963 233.0
DYD3_k127_2416684_19 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000567 221.0
DYD3_k127_2416684_2 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.347e-269 835.0
DYD3_k127_2416684_20 transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000001194 210.0
DYD3_k127_2416684_21 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000000000000000000000000000000000000002506 162.0
DYD3_k127_2416684_22 transcriptional regulator, (TetR family - - - 0.00000000000000000000000000000000006748 140.0
DYD3_k127_2416684_23 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000000000005269 126.0
DYD3_k127_2416684_24 F420H(2)-dependent quinone reductase - GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0030312,GO:0031406,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0044464,GO:0048037,GO:0050662,GO:0055114,GO:0070967,GO:0071944,GO:0097159,GO:0097367,GO:1901363 - 0.0000000000000000000000000000005217 127.0
DYD3_k127_2416684_25 Protein of unknown function (DUF4242) - - - 0.0000000000000000000003074 96.0
DYD3_k127_2416684_26 Sel1-like repeats. K07126 - - 0.00000000000000000001083 101.0
DYD3_k127_2416684_27 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000002424 91.0
DYD3_k127_2416684_28 Sel1-like repeats. K07126 - - 0.000000000000000003173 92.0
DYD3_k127_2416684_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.179 3.988e-194 613.0
DYD3_k127_2416684_4 DEAD-like helicases superfamily K03732,K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 539.0
DYD3_k127_2416684_5 Protein of unknown function (DUF1329) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 529.0
DYD3_k127_2416684_6 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K09969 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 487.0
DYD3_k127_2416684_7 amino acid ABC transporter K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 470.0
DYD3_k127_2416684_8 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K09971 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 466.0
DYD3_k127_2416684_9 ABC-type polar amino acid transport system ATPase component K02028,K09972,K16963 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 415.0
DYD3_k127_2430408_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 512.0
DYD3_k127_2430408_1 Mrr N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 383.0
DYD3_k127_2430408_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 350.0
DYD3_k127_2430408_3 - - - - 0.0000001242 64.0
DYD3_k127_2448295_0 DHH family K07462 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 4.707e-215 683.0
DYD3_k127_2448295_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 510.0
DYD3_k127_2448295_2 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446,K11532 - 3.1.3.11,3.1.3.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 452.0
DYD3_k127_2448295_3 Aminotransferase K14261 - - 0.0000000000000000002502 88.0
DYD3_k127_2448295_4 PFAM chemotaxis K03406 - - 0.0000000002216 71.0
DYD3_k127_2457097_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 478.0
DYD3_k127_2457097_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 355.0
DYD3_k127_2457097_10 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000213 94.0
DYD3_k127_2457097_11 Transposase or inactivated derivative K07494 - - 0.00000000000000000005013 89.0
DYD3_k127_2457097_12 - - - - 0.000003517 51.0
DYD3_k127_2457097_13 - - - - 0.00000377 49.0
DYD3_k127_2457097_2 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 348.0
DYD3_k127_2457097_3 - - - - 0.000000000000000000000000000000000000000000000000000005813 213.0
DYD3_k127_2457097_4 Ubiquinol-cytochrome C chaperone K17662 - - 0.0000000000000000000000000000000000000000000005399 175.0
DYD3_k127_2457097_5 MerR HTH family regulatory protein - - - 0.000000000000000000000000000000000000003018 152.0
DYD3_k127_2457097_6 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000003892 146.0
DYD3_k127_2457097_7 COG2913 Small protein A (tmRNA-binding) - - - 0.0000000000000000000000000000000006802 138.0
DYD3_k127_2457097_8 Shikimate kinase K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000239 125.0
DYD3_k127_2457097_9 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000000000000000007454 125.0
DYD3_k127_2457272_0 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 1.198e-260 828.0
DYD3_k127_2457272_1 Aminotransferase class I and II K14261,K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 490.0
DYD3_k127_2461902_0 PGAP1-like protein - - - 3.219e-285 881.0
DYD3_k127_2461902_1 PFAM Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 572.0
DYD3_k127_2461902_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K14751 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 438.0
DYD3_k127_2461902_3 Pyridoxal phosphate biosynthetic protein PdxA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007404 413.0
DYD3_k127_2461902_4 Fumarylacetoacetate (FAA) hydrolase family K02554 - 4.2.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008715 389.0
DYD3_k127_2461902_5 Serine aminopeptidase, S33 K10216 - 3.7.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008705 376.0
DYD3_k127_2461902_6 decarboxylase K01617 - 4.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 315.0
DYD3_k127_2461902_7 Aromatic-ring-hydroxylating dioxygenase, beta subunit K05550 - 1.14.12.10 0.0000000000000000000000000000000000000000000000000000000001397 207.0
DYD3_k127_2461902_8 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000001597 175.0
DYD3_k127_2464466_0 amidohydrolase - - - 4.471e-240 754.0
DYD3_k127_2464466_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 539.0
DYD3_k127_2464466_2 Converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 489.0
DYD3_k127_2464466_3 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 402.0
DYD3_k127_2464466_4 Carboxymuconolactone decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000005852 228.0
DYD3_k127_2464466_5 signal transduction histidine kinase K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000005774 163.0
DYD3_k127_2464466_6 metal-binding protein - - - 0.0000000000000000000000002457 106.0
DYD3_k127_2464466_7 Alcohol dehydrogenase GroES-like domain - - - 0.0000000000000002048 79.0
DYD3_k127_2464466_8 thiolester hydrolase activity - - - 0.000000003097 67.0
DYD3_k127_2473534_0 Belongs to the enoyl-CoA hydratase isomerase family K00022,K07514 - 1.1.1.35,4.2.1.17,5.3.3.8 1.901e-286 894.0
DYD3_k127_2473534_1 alpha/beta hydrolase fold K01066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 357.0
DYD3_k127_2473534_2 Histidine kinase K07716,K20974 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 332.0
DYD3_k127_2473534_3 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000001332 223.0
DYD3_k127_2473534_4 phosphorelay signal transduction system - - - 0.0000000000000000000001531 102.0
DYD3_k127_2473534_5 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.000000001763 64.0
DYD3_k127_2481107_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 8.919e-298 925.0
DYD3_k127_2481107_1 Sugar (and other) transporter - - - 7.22e-226 711.0
DYD3_k127_2481107_10 GIY-YIG catalytic domain - - - 0.0000000000000000000000001988 108.0
DYD3_k127_2481107_11 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000007279 106.0
DYD3_k127_2481107_12 - - - - 0.0000000000000001028 84.0
DYD3_k127_2481107_13 General secretion pathway protein K02459 - - 0.0000000000000001309 88.0
DYD3_k127_2481107_14 overlaps another CDS with the same product name K02458 - - 0.0000000002363 68.0
DYD3_k127_2481107_15 General secretion pathway protein H K02457 - - 0.000000001759 66.0
DYD3_k127_2481107_17 PFAM General secretion pathway protein K K02460 - - 0.000006003 57.0
DYD3_k127_2481107_2 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 609.0
DYD3_k127_2481107_3 PFAM Type II secretion system protein E K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 492.0
DYD3_k127_2481107_4 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 339.0
DYD3_k127_2481107_5 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 300.0
DYD3_k127_2481107_6 PAS fold K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000004085 227.0
DYD3_k127_2481107_7 COG1459 Type II secretory pathway, component PulF K02455 GO:0002790,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0016020,GO:0032940,GO:0033036,GO:0042886,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098776 - 0.0000000000000000000000000000000000000000000000000000000703 211.0
DYD3_k127_2481107_8 Pentapeptide repeats (9 copies) - - - 0.0000000000000000000000000000000000000000000000000000002367 211.0
DYD3_k127_2481107_9 PFAM type II secretion system protein G K02456 - - 0.00000000000000000000000000000000000000005082 155.0
DYD3_k127_2485344_0 NADPH:quinone reductase activity K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 370.0
DYD3_k127_2485344_1 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 360.0
DYD3_k127_2485344_2 Exporters of the RND superfamily K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005226 289.0
DYD3_k127_2485344_3 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000000000000000001093 192.0
DYD3_k127_2485344_4 Glutathione S-transferase, C-terminal domain - - - 0.0000000000000000000000000000000000006464 147.0
DYD3_k127_2512512_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002571 541.0
DYD3_k127_2512512_1 ATPase with chaperone activity K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 504.0
DYD3_k127_2512512_10 Transposase K07497 - - 0.0000001009 53.0
DYD3_k127_2512512_2 Belongs to the prokaryotic GSH synthase family K01920 GO:0003674,GO:0003824,GO:0004363,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042398,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901564,GO:1901566,GO:1901576 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 469.0
DYD3_k127_2512512_3 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 344.0
DYD3_k127_2512512_4 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 331.0
DYD3_k127_2512512_5 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000006689 226.0
DYD3_k127_2512512_6 periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000006556 174.0
DYD3_k127_2512512_7 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000000000001165 123.0
DYD3_k127_2512512_8 lactoylglutathione lyase activity - - - 0.000000000000000000000000001586 117.0
DYD3_k127_2512512_9 COG2801 Transposase and inactivated derivatives K07497 - - 0.0000000006782 65.0
DYD3_k127_2534781_0 PFAM acyl-CoA dehydrogenase domain protein K00253 - 1.3.8.4 5.838e-210 659.0
DYD3_k127_2534781_1 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 496.0
DYD3_k127_2534781_2 Phosphoadenosine phosphosulfate reductase family K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 308.0
DYD3_k127_2534781_3 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.0000000000000000009148 87.0
DYD3_k127_2557658_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 543.0
DYD3_k127_2557658_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 505.0
DYD3_k127_2557658_10 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000009962 196.0
DYD3_k127_2557658_11 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000000401 149.0
DYD3_k127_2557658_12 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000005347 144.0
DYD3_k127_2557658_13 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000008846 76.0
DYD3_k127_2557658_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 461.0
DYD3_k127_2557658_3 O-antigen ligase like membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 491.0
DYD3_k127_2557658_4 Divergent polysaccharide deacetylase K09798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001129 288.0
DYD3_k127_2557658_5 COG0531 Amino acid transporters K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000667 264.0
DYD3_k127_2557658_6 transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002302 252.0
DYD3_k127_2557658_7 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000007344 240.0
DYD3_k127_2557658_8 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000276 214.0
DYD3_k127_2557658_9 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000001895 199.0
DYD3_k127_25634_0 Glycosyl transferases group 1 - - - 6.333e-279 893.0
DYD3_k127_25634_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 3.465e-213 675.0
DYD3_k127_25634_10 PFAM ABC-2 type transporter - - - 0.00000000000000000000000000000000000000000000000000000007353 205.0
DYD3_k127_25634_2 COG4618 ABC-type protease lipase transport system, ATPase and permease components K16299 - - 1.426e-208 663.0
DYD3_k127_25634_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 500.0
DYD3_k127_25634_4 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006325 455.0
DYD3_k127_25634_5 GDP-mannose 4,6 dehydratase K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003849 452.0
DYD3_k127_25634_6 ABC-type polysaccharide polyol phosphate transport system, ATPase component K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 443.0
DYD3_k127_25634_7 Type I secretion membrane fusion protein, HlyD K16300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006728 368.0
DYD3_k127_25634_8 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 322.0
DYD3_k127_25634_9 Methionine biosynthesis protein MetW K18827 - 2.1.1.294,2.7.1.181 0.00000000000000000000000000000000000000000000000000000000004619 222.0
DYD3_k127_258796_0 Aminotransferase K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 555.0
DYD3_k127_258796_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 469.0
DYD3_k127_258796_10 HNH endonuclease - - - 0.000000000000000000003779 95.0
DYD3_k127_258796_11 - - - - 0.000000000000000261 87.0
DYD3_k127_258796_12 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000000009667 78.0
DYD3_k127_258796_13 Protein of unknown function (DUF1674) - - - 0.00000000000001603 76.0
DYD3_k127_258796_14 D-isomer specific 2-hydroxyacid dehydrogenase family protein - - - 0.0000000000001918 73.0
DYD3_k127_258796_2 C-5 cytosine-specific DNA methylase K00558 - 2.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000894 442.0
DYD3_k127_258796_3 Peptidase family M48 K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 429.0
DYD3_k127_258796_4 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 426.0
DYD3_k127_258796_5 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 417.0
DYD3_k127_258796_6 XcyI restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 304.0
DYD3_k127_258796_7 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000691 282.0
DYD3_k127_258796_8 DNA mismatch endonuclease Vsr K07458 - - 0.0000000000000000000000000000000000000000000000000001171 190.0
DYD3_k127_258796_9 Nitroreductase - - - 0.00000000000000000000000000002005 119.0
DYD3_k127_2598523_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 404.0
DYD3_k127_2598523_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 374.0
DYD3_k127_2598523_2 N-terminal domain of oxidoreductase K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 376.0
DYD3_k127_2614843_0 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005277 569.0
DYD3_k127_2614843_1 Phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 377.0
DYD3_k127_2614843_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 310.0
DYD3_k127_2614843_3 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000003958 186.0
DYD3_k127_2614843_4 FMN_bind - - - 0.0000000000000000000000000000000000000000001952 164.0
DYD3_k127_2614843_5 Prokaryotic cytochrome b561 K12262 - - 0.00000000000000000000000000000000005153 140.0
DYD3_k127_2614843_6 PepSY-associated TM region - - - 0.00000000000000000000000000000001047 136.0
DYD3_k127_2614843_7 EF-hand, calcium binding motif - - - 0.000000000000155 78.0
DYD3_k127_2614843_8 - - - - 0.00000000006279 69.0
DYD3_k127_2614843_9 Heavy-metal resistance - - - 0.000001276 57.0
DYD3_k127_2623123_0 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 1.715e-280 869.0
DYD3_k127_2623123_1 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003587 589.0
DYD3_k127_2623123_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 592.0
DYD3_k127_2623123_3 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 524.0
DYD3_k127_2623123_4 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 411.0
DYD3_k127_2623123_5 ATP synthase alpha/beta family, beta-barrel domain K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 402.0
DYD3_k127_2623123_6 ABC-type multidrug transport system, permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 403.0
DYD3_k127_2623123_7 ABC-2 family transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 372.0
DYD3_k127_2623123_8 Secretion protein K01993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000245 275.0
DYD3_k127_2626244_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 596.0
DYD3_k127_2626244_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 594.0
DYD3_k127_2626244_10 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000154 244.0
DYD3_k127_2626244_11 Phytoene squalene synthetase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000009934 225.0
DYD3_k127_2626244_12 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000002445 211.0
DYD3_k127_2626244_13 Putative FMN-binding domain K07734 - - 0.00000000000000000000000000000000000000000000000000007088 194.0
DYD3_k127_2626244_14 Preprotein translocase subunit (YajC) K03210 - - 0.000000000000000000000000000000001645 132.0
DYD3_k127_2626244_15 Alpha/beta hydrolase family - - - 0.0000000000000000000000007341 114.0
DYD3_k127_2626244_16 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 GO:0003674,GO:0005215 - 0.000000000000000003047 87.0
DYD3_k127_2626244_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 GO:0003674,GO:0005215 - 0.0000000000000002567 80.0
DYD3_k127_2626244_18 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000002986 61.0
DYD3_k127_2626244_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 589.0
DYD3_k127_2626244_3 Protein of unknown function (DUF815) K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 406.0
DYD3_k127_2626244_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 370.0
DYD3_k127_2626244_5 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 363.0
DYD3_k127_2626244_6 TOBE domain K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005698 341.0
DYD3_k127_2626244_7 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002463 316.0
DYD3_k127_2626244_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 311.0
DYD3_k127_2626244_9 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000321 265.0
DYD3_k127_2713858_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005915 454.0
DYD3_k127_2713858_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 398.0
DYD3_k127_2713858_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002833 323.0
DYD3_k127_2713858_3 Surface antigen K07278 - - 0.0000000000000000000000000000000000000000002782 160.0
DYD3_k127_2716475_0 Belongs to the carbamoyltransferase HypF family K04656 - - 1.052e-248 790.0
DYD3_k127_2716475_1 Nickel-dependent hydrogenase K00436 - 1.12.1.2 2.924e-223 699.0
DYD3_k127_2716475_2 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004016 533.0
DYD3_k127_2716475_3 AIR synthase related protein, N-terminal domain K04655 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0018193,GO:0018198,GO:0018249,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046892,GO:0051604,GO:0071704,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 456.0
DYD3_k127_2716475_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 324.0
DYD3_k127_2716475_5 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000057 291.0
DYD3_k127_2716475_6 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000002782 197.0
DYD3_k127_2716475_7 Hydrogenase maturation protease - - - 0.000000000000000000000000000000000000000000000002906 183.0
DYD3_k127_2716475_8 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000001032 154.0
DYD3_k127_2716475_9 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.0000000000000000000000001516 108.0
DYD3_k127_2734170_0 Class II release factor RF3, C-terminal domain K02837 - - 1.136e-270 840.0
DYD3_k127_2734170_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 4.899e-243 762.0
DYD3_k127_2734170_2 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000004908 237.0
DYD3_k127_2734170_3 Arylesterase - - - 0.000000000000000000000000000000000000000000000717 173.0
DYD3_k127_2734170_4 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000001437 80.0
DYD3_k127_2739948_0 PEP-utilising enzyme, N-terminal K08484 - 2.7.3.9 2.492e-270 852.0
DYD3_k127_2739948_1 TIGRFAM methylmalonic acid semialdehyde dehydrogenase K00140 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896 1.2.1.18,1.2.1.27 3.03e-260 809.0
DYD3_k127_2739948_10 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 396.0
DYD3_k127_2739948_11 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008696 381.0
DYD3_k127_2739948_12 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 375.0
DYD3_k127_2739948_13 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 344.0
DYD3_k127_2739948_14 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 338.0
DYD3_k127_2739948_15 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 338.0
DYD3_k127_2739948_16 Belongs to the MIP aquaporin (TC 1.A.8) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002832 282.0
DYD3_k127_2739948_17 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002457 272.0
DYD3_k127_2739948_18 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000003506 256.0
DYD3_k127_2739948_19 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01450,K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.31,3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000007762 237.0
DYD3_k127_2739948_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000353 616.0
DYD3_k127_2739948_20 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000001301 239.0
DYD3_k127_2739948_21 Low molecular weight phosphatase family K03741,K03892 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000000000004228 230.0
DYD3_k127_2739948_22 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000002544 198.0
DYD3_k127_2739948_23 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000000001616 142.0
DYD3_k127_2739948_24 Domain of unknown function (DUF4115) K15539 - - 0.0000000000000000000000000000000008814 144.0
DYD3_k127_2739948_25 FecR protein - - - 0.000000000000000000000000000000003166 135.0
DYD3_k127_2739948_26 Domain of unknown function (DUF4167) - - - 0.00000000000000000000002582 105.0
DYD3_k127_2739948_27 STAS domain K06378 - - 0.0000000000000000001575 92.0
DYD3_k127_2739948_28 anti-sigma regulatory factor K04757 - 2.7.11.1 0.00000003182 65.0
DYD3_k127_2739948_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007141 610.0
DYD3_k127_2739948_4 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006436 587.0
DYD3_k127_2739948_5 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 552.0
DYD3_k127_2739948_6 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009296 475.0
DYD3_k127_2739948_7 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 473.0
DYD3_k127_2739948_8 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 434.0
DYD3_k127_2739948_9 AFG1-like ATPase K06916 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030163,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0035694,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071840,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 429.0
DYD3_k127_2806889_0 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 538.0
DYD3_k127_2806889_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 491.0
DYD3_k127_2806889_2 GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 392.0
DYD3_k127_2806889_3 tRNA synthetases class I (E and Q), catalytic domain K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 310.0
DYD3_k127_2806889_4 Phospholipase/Carboxylesterase K06999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 288.0
DYD3_k127_2806889_5 pantothenate kinase activity K00867 GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005534 285.0
DYD3_k127_2806889_6 competence protein - - - 0.0000000000000000000000000000000000000001794 158.0
DYD3_k127_2806889_7 Thioredoxin-like - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000001147 114.0
DYD3_k127_2806889_8 Septum formation initiator - - - 0.00000000000000000000000001508 112.0
DYD3_k127_2806889_9 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162,K00627 - 1.2.4.1,2.3.1.12 0.000000000000000000000000234 106.0
DYD3_k127_2883095_0 Sulfate permease family K03321 - - 3.061e-228 720.0
DYD3_k127_2883095_1 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 412.0
DYD3_k127_2883095_2 ammonia monooxygenase K07120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003478 286.0
DYD3_k127_2883095_3 Methyltransferase FkbM domain - - - 0.000000000000000000005159 96.0
DYD3_k127_2893090_0 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 488.0
DYD3_k127_2893090_1 acyl-CoA transferases carnitine dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 477.0
DYD3_k127_2893090_2 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000005056 85.0
DYD3_k127_2893090_3 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000898 86.0
DYD3_k127_2902489_0 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004377 271.0
DYD3_k127_2902489_1 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000007755 186.0
DYD3_k127_2902489_2 NADH ubiquinone oxidoreductase 17.2 kD subunit K00356 - 1.6.99.3 0.000000000000000000000000000000000000000000001743 167.0
DYD3_k127_2902489_3 protein conserved in bacteria - - - 0.0000000000001188 80.0
DYD3_k127_2902489_4 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000002225 72.0
DYD3_k127_2985515_0 Belongs to the enoyl-CoA hydratase isomerase family K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 1.499e-256 809.0
DYD3_k127_2985515_1 Protein of unknown function (DUF861) - - - 0.00000000000000000000000000000000000000000000005285 174.0
DYD3_k127_3029674_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1288.0
DYD3_k127_3029674_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 7.873e-218 682.0
DYD3_k127_3029674_2 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 398.0
DYD3_k127_3029674_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007915 304.0
DYD3_k127_3029674_4 methyltransferase activity K21310 - 2.1.1.334 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003429 299.0
DYD3_k127_3029674_5 Cupin domain - - - 0.00000000000000000000000000000000000000000002406 177.0
DYD3_k127_3029674_6 transcriptional regulator - - - 0.00000000000000000000000000000000000008235 150.0
DYD3_k127_3029674_7 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000007599 68.0
DYD3_k127_3052359_0 Sel1 domain protein repeat-containing protein K07126 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 518.0
DYD3_k127_3052359_1 TIGRFAM outer membrane autotransporter barrel - - - 0.00000000000000000000000000000000000000000000000000000000000002551 232.0
DYD3_k127_3052359_2 - - - - 0.0000001376 61.0
DYD3_k127_3055405_0 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005907 572.0
DYD3_k127_3055405_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005406 531.0
DYD3_k127_3055405_2 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007918 507.0
DYD3_k127_3055405_3 Uncharacterized protein conserved in bacteria (DUF2093) - - - 0.000000005419 57.0
DYD3_k127_3067399_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 499.0
DYD3_k127_3067399_1 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 389.0
DYD3_k127_3067399_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000462 225.0
DYD3_k127_3067399_3 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000002703 125.0
DYD3_k127_3067399_4 Thioesterase superfamily - - - 0.00000000000000000000001749 106.0
DYD3_k127_3067399_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000007506 96.0
DYD3_k127_3068120_0 PFAM Helicase conserved C-terminal domain K17675 - 3.6.4.13 1.445e-262 827.0
DYD3_k127_3068120_1 HlyD membrane-fusion protein of T1SS - - - 0.000000000000000000001215 104.0
DYD3_k127_3069613_0 Protein of unknown function (DUF2793) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003773 250.0
DYD3_k127_3069613_1 Cell Wall Hydrolase - - - 0.0000000000000000000000003986 111.0
DYD3_k127_3069613_2 Phage Mu protein F like protein - - - 0.00000000000001143 85.0
DYD3_k127_3070965_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 6.124e-230 717.0
DYD3_k127_3070965_1 Cytochrome P450 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 595.0
DYD3_k127_3070965_2 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 396.0
DYD3_k127_3070965_3 Binding-protein-dependent transport system inner membrane component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 306.0
DYD3_k127_3070965_4 Bacterial extracellular solute-binding protein K02020 GO:0003674,GO:0005488,GO:0030973,GO:0043167,GO:0043168 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005592 277.0
DYD3_k127_3093899_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 1.356e-223 700.0
DYD3_k127_3093899_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 9.142e-205 643.0
DYD3_k127_3093899_10 Stringent starvation protein B K09985 - - 0.0000000000000000000000000000000000000000001909 164.0
DYD3_k127_3093899_11 F420H(2)-dependent quinone reductase - - - 0.0000000000000000000000000000000000000000005928 163.0
DYD3_k127_3093899_12 Low molecular weight phosphatase family K01104,K03741 - 1.20.4.1,3.1.3.48 0.000000000000000000000000000000000000000002743 161.0
DYD3_k127_3093899_13 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000007517 134.0
DYD3_k127_3093899_14 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000001165 134.0
DYD3_k127_3093899_15 Protein of unknown function (DUF2948) - - - 0.00000000000000000000000000001203 123.0
DYD3_k127_3093899_16 Ribbon-helix-helix domain - - - 0.000000000000000007943 86.0
DYD3_k127_3093899_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 580.0
DYD3_k127_3093899_3 Belongs to the mannose-6-phosphate isomerase type 2 family K00971,K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005873 550.0
DYD3_k127_3093899_4 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 530.0
DYD3_k127_3093899_5 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 456.0
DYD3_k127_3093899_6 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005404 385.0
DYD3_k127_3093899_7 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000001629 244.0
DYD3_k127_3093899_8 Uncharacterised protein family (UPF0262) - - - 0.000000000000000000000000000000000000000000000000000000000000001706 227.0
DYD3_k127_3093899_9 F420H(2)-dependent quinone reductase - - - 0.0000000000000000000000000000000000000000001582 164.0
DYD3_k127_3108887_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 6.151e-274 852.0
DYD3_k127_3108887_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 9.597e-226 703.0
DYD3_k127_3108887_10 Protein of unknown function (FYDLN_acid) - - - 0.0000000000000008523 82.0
DYD3_k127_3108887_11 Lipopolysaccharide assembly protein A domain - - - 0.000000000005866 69.0
DYD3_k127_3108887_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 533.0
DYD3_k127_3108887_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 370.0
DYD3_k127_3108887_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 357.0
DYD3_k127_3108887_5 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 295.0
DYD3_k127_3108887_6 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 290.0
DYD3_k127_3108887_7 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000001058 254.0
DYD3_k127_3108887_8 Cytidylate kinase K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000000000001067 240.0
DYD3_k127_3108887_9 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141 - 0.00000000000000000000000000000000000000000001748 163.0
DYD3_k127_3119015_0 DNA polymerase beta domain protein region K07075 - - 0.000000000000000000000000000000000006351 139.0
DYD3_k127_3119015_1 Protein of unknown function DUF86 - - - 0.00000000000000000000000000000000018 135.0
DYD3_k127_3119015_2 MAPEG family - - - 0.000000000000000000000000005548 113.0
DYD3_k127_3119015_3 Amidohydrolase - - - 0.0000000000000000000000006923 119.0
DYD3_k127_3119015_4 TIM-barrel fold metal-dependent hydrolase - - - 0.000000000000000000000001262 118.0
DYD3_k127_3119015_5 PFAM Transposase IS200 like - - - 0.000000000000003944 76.0
DYD3_k127_3119015_6 - - - - 0.000000000002801 74.0
DYD3_k127_3153848_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 6.334e-315 975.0
DYD3_k127_3153848_1 acetyl-coa acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009309 543.0
DYD3_k127_3153848_2 Sulfotransferase domain K01014 - 2.8.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 486.0
DYD3_k127_3153848_3 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.000000000000000000000000000000000000000000000000000006871 195.0
DYD3_k127_31559_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 2.102e-194 614.0
DYD3_k127_31559_1 Patatin-like phospholipase K07001 GO:0003674,GO:0003824,GO:0016787 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 349.0
DYD3_k127_31559_2 GTP cyclohydrolase I K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001382 279.0
DYD3_k127_31559_3 Histidine biosynthesis bifunctional protein HisIE K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000000000000000000000005615 239.0
DYD3_k127_31559_4 SufE protein probably involved in Fe-S center assembly K02426 - - 0.00000000000000000000000000000000000000000000000000004605 190.0
DYD3_k127_31559_5 NifU-like N terminal domain - - - 0.00000000000000000000000000000000000000000000005121 173.0
DYD3_k127_31559_6 Hemimethylated DNA-binding protein YccV like K11940 - - 0.000000000000000000000000000000000000000000001899 167.0
DYD3_k127_31559_7 Putative metallopeptidase - - - 0.000000000000000000000000000000000000000007077 167.0
DYD3_k127_31559_8 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000000002665 119.0
DYD3_k127_31559_9 - - - - 0.0000000001231 61.0
DYD3_k127_3256748_0 exporters of the RND superfamily K07003 - - 3.394e-259 835.0
DYD3_k127_3256748_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000851 377.0
DYD3_k127_3256748_2 N-Acetylmuramoyl-L-alanine amidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 344.0
DYD3_k127_3256748_3 D-isomer specific 2-hydroxyacid dehydrogenase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 299.0
DYD3_k127_3256748_4 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000006281 142.0
DYD3_k127_3256748_5 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000000726 78.0
DYD3_k127_3277616_0 acyl-CoA dehydrogenase K00252 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.3.8.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 543.0
DYD3_k127_3277616_1 Enoyl-CoA hydratase/isomerase K01692,K05605 - 3.1.2.4,4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 401.0
DYD3_k127_3277616_2 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 385.0
DYD3_k127_3277616_3 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 375.0
DYD3_k127_3277616_4 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000003368 181.0
DYD3_k127_3277616_5 PAS domain - - - 0.000000002863 65.0
DYD3_k127_3283786_0 helicase - - - 1.643e-194 620.0
DYD3_k127_3283786_1 Aminotransferase class I and II K00643 - 2.3.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 581.0
DYD3_k127_3283786_2 methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000002964 207.0
DYD3_k127_3283786_3 ROS/MUCR transcriptional regulator protein - - - 0.000000000000000000000000000000000000000000000703 170.0
DYD3_k127_3283786_4 Protein of unknown function (DUF1499) - - - 0.000000000000000000000000000000000000000003164 164.0
DYD3_k127_3283786_5 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.1.2.1 0.00000000000000000000006871 99.0
DYD3_k127_3283786_6 - - - - 0.000000003769 61.0
DYD3_k127_328677_0 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 462.0
DYD3_k127_328677_1 PFAM Phosphate-selective porin O and P K07221 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 378.0
DYD3_k127_328677_2 Exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 362.0
DYD3_k127_328677_3 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000000001183 266.0
DYD3_k127_328677_4 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000003467 175.0
DYD3_k127_328677_5 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.0000000000000000000000000000000006592 132.0
DYD3_k127_328677_6 PAS domain - - - 0.0000000000003394 77.0
DYD3_k127_328677_7 FkbM family - - - 0.00000000006455 73.0
DYD3_k127_3319896_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0 1020.0
DYD3_k127_3319896_1 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 1.05e-198 628.0
DYD3_k127_3319896_2 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008894 517.0
DYD3_k127_3319896_3 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000004166 241.0
DYD3_k127_3319896_4 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000003895 177.0
DYD3_k127_3319896_5 Pentapeptide repeats (9 copies) - - - 0.000000000000000000000000000000000000000002592 162.0
DYD3_k127_3319896_6 Bacterial transferase hexapeptide (six repeats) K00638 - 2.3.1.28 0.0000000000000000000000000000000001248 141.0
DYD3_k127_3319896_7 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000001725 115.0
DYD3_k127_3319896_8 C-terminal region of peptidase_M24 K01262 - 3.4.11.9 0.00000000000000000003369 91.0
DYD3_k127_3319896_9 - - - - 0.00000000001412 66.0
DYD3_k127_3323822_0 COG0526, thiol-disulfide isomerase and thioredoxins - - - 5.807e-194 616.0
DYD3_k127_3323822_1 Protein of unknown function (DUF1302) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000571 265.0
DYD3_k127_3323822_2 - - - - 0.000000000000000000000000000001137 123.0
DYD3_k127_3323822_3 Protein of unknown function (DUF1302) - - - 0.00000000000000000000000006773 119.0
DYD3_k127_3323822_4 - - - - 0.0000000000000000006473 88.0
DYD3_k127_3330588_0 Belongs to the ABC transporter superfamily K02031,K02032,K13896 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008144,GO:0008150,GO:0015399,GO:0015405,GO:0015833,GO:0015893,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0035672,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042884,GO:0042886,GO:0042891,GO:0043167,GO:0043168,GO:0043492,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 6.144e-236 740.0
DYD3_k127_3330588_1 Binding-protein-dependent transport system inner membrane component K13895 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 557.0
DYD3_k127_3330588_2 Binding-protein-dependent transport system inner membrane component K13894 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0022857,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 409.0
DYD3_k127_335722_0 GAD domain K01876 - 6.1.1.12 2.197e-275 859.0
DYD3_k127_335722_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 2.281e-230 718.0
DYD3_k127_335722_10 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 302.0
DYD3_k127_335722_11 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005749 293.0
DYD3_k127_335722_12 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 294.0
DYD3_k127_335722_13 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 288.0
DYD3_k127_335722_14 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001884 251.0
DYD3_k127_335722_15 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000003172 242.0
DYD3_k127_335722_16 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000002213 243.0
DYD3_k127_335722_17 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000005272 220.0
DYD3_k127_335722_18 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000001161 217.0
DYD3_k127_335722_19 binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000000000000001755 209.0
DYD3_k127_335722_2 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 1.873e-200 632.0
DYD3_k127_335722_20 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000002633 207.0
DYD3_k127_335722_21 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000001885 205.0
DYD3_k127_335722_22 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000002635 203.0
DYD3_k127_335722_23 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019144,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0047631,GO:0050896 3.6.1.13 0.00000000000000000000000000000000000000000000000000000007649 202.0
DYD3_k127_335722_24 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001133 197.0
DYD3_k127_335722_25 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000008155 183.0
DYD3_k127_335722_26 Ribosomal protein S19 K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000000001216 171.0
DYD3_k127_335722_27 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000001591 164.0
DYD3_k127_335722_28 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000000000003972 147.0
DYD3_k127_335722_29 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 - - 0.00000000000000000000000000000000000007517 146.0
DYD3_k127_335722_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006744 556.0
DYD3_k127_335722_30 protein involved in outer membrane biogenesis K07290 - - 0.00000000000000000000000000000000008817 153.0
DYD3_k127_335722_31 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.0000000000000000000000000000002241 126.0
DYD3_k127_335722_32 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000009749 123.0
DYD3_k127_335722_33 Ribosomal protein L30p/L7e K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000002197 103.0
DYD3_k127_335722_34 Ribosomal L29 protein K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000004713 88.0
DYD3_k127_335722_35 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000006782 63.0
DYD3_k127_335722_4 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 555.0
DYD3_k127_335722_5 Trypsin K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 540.0
DYD3_k127_335722_6 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006037 490.0
DYD3_k127_335722_7 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 391.0
DYD3_k127_335722_8 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 382.0
DYD3_k127_335722_9 Responsible for synthesis of pseudouridine from uracil K06179 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 382.0
DYD3_k127_3361412_0 Flavin-binding monooxygenase-like - - - 9.61e-272 847.0
DYD3_k127_3361412_1 Esterase-like activity of phytase - - - 0.0000000000000000000000000000000000000000000000000000000000000326 226.0
DYD3_k127_3361412_2 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000001005 128.0
DYD3_k127_3400129_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 563.0
DYD3_k127_3400129_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005212 489.0
DYD3_k127_3400129_10 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000000002958 194.0
DYD3_k127_3400129_11 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000000000000000005918 183.0
DYD3_k127_3400129_12 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.000000000000000000000000000000000000000000000005998 178.0
DYD3_k127_3400129_13 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000001927 169.0
DYD3_k127_3400129_14 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000000000004824 130.0
DYD3_k127_3400129_15 OstA-like protein K09774 - - 0.000000000000000000000002213 111.0
DYD3_k127_3400129_17 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0003196 46.0
DYD3_k127_3400129_2 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 407.0
DYD3_k127_3400129_3 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003962 392.0
DYD3_k127_3400129_4 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 376.0
DYD3_k127_3400129_5 3'-5' exonuclease K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 306.0
DYD3_k127_3400129_6 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008904 286.0
DYD3_k127_3400129_7 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 290.0
DYD3_k127_3400129_8 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006519 271.0
DYD3_k127_3400129_9 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007576 254.0
DYD3_k127_342691_0 Glutamine synthetase, beta-Grasp domain K01915 - 6.3.1.2 2.65e-241 752.0
DYD3_k127_342691_1 PFAM Endonuclease Exonuclease phosphatase family K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 367.0
DYD3_k127_342691_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 350.0
DYD3_k127_342691_3 Protein of unknown function (DUF1009) K09949 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000301 272.0
DYD3_k127_342691_4 Nitrogen regulatory protein P-II K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.000000000000000000000000000000000000000000000000000000003232 201.0
DYD3_k127_342691_5 Protein of unknown function (DUF1223) - - - 0.0000000000000000000000000000000000000000000000000000004015 205.0
DYD3_k127_342691_6 Methylmuconolactone methyl-isomerase - - - 0.000000000000000000000000000000000000000001893 158.0
DYD3_k127_342691_7 Helix-turn-helix XRE-family like proteins K21498 - - 0.000000000000000000000000000000000004748 138.0
DYD3_k127_342691_8 KR domain - - - 0.000134 44.0
DYD3_k127_3469389_0 Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009555 554.0
DYD3_k127_3469389_1 Adenylylsulphate kinase K00955 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 372.0
DYD3_k127_3469389_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006847 281.0
DYD3_k127_3469389_3 carbonic anhydrase K01674 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000003672 233.0
DYD3_k127_3469389_4 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.00000000000000000000000000000000000003442 151.0
DYD3_k127_3504657_0 LVIVD repeat - - - 0.0 1686.0
DYD3_k127_3504657_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 363.0
DYD3_k127_3504657_2 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 327.0
DYD3_k127_3504657_3 Steryl acetyl hydrolase K01066,K14731 - 3.1.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000001988 266.0
DYD3_k127_3504657_4 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000004089 168.0
DYD3_k127_3606034_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 - 2.7.7.7 0.0 1439.0
DYD3_k127_3606034_1 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 7.315e-237 745.0
DYD3_k127_3606034_2 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006119 413.0
DYD3_k127_3606034_3 ribonuclease BN K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001851 279.0
DYD3_k127_3606034_4 SOS response K14160 - - 0.000000000000000000000000000000000000000000000000000001598 200.0
DYD3_k127_3606034_5 Predicted membrane protein (DUF2177) - - - 0.000000000008711 66.0
DYD3_k127_363971_0 serine protein kinase K07180 - - 0.0 1078.0
DYD3_k127_363971_1 SpoVR family K06415 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 5.401e-230 722.0
DYD3_k127_363971_10 Domain of unknown function (DUF1989) K09967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 299.0
DYD3_k127_363971_11 YqcI/YcgG family K09190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009693 268.0
DYD3_k127_363971_12 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002008 236.0
DYD3_k127_363971_13 Dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000002312 218.0
DYD3_k127_363971_14 Belongs to the ArsC family K00537 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.20.4.1 0.000000000000000000000000000000000000000000000000006272 183.0
DYD3_k127_363971_15 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000001059 160.0
DYD3_k127_363971_16 Tetratricopeptide repeat-like domain - - - 0.00000000000000000000000000000000001005 145.0
DYD3_k127_363971_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 3.612e-217 681.0
DYD3_k127_363971_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 5.522e-201 637.0
DYD3_k127_363971_4 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 600.0
DYD3_k127_363971_5 Competence protein K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 539.0
DYD3_k127_363971_6 PQQ-like domain K17713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 520.0
DYD3_k127_363971_7 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 516.0
DYD3_k127_363971_8 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006242 419.0
DYD3_k127_363971_9 Aldo/keto reductase family - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008152,GO:0009987,GO:0015672,GO:0016491,GO:0017144,GO:0030001,GO:0034220,GO:0034641,GO:0042723,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071704,GO:0071804,GO:0071805,GO:0072527,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 411.0
DYD3_k127_3643708_0 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003324 426.0
DYD3_k127_3643708_1 PFAM polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 378.0
DYD3_k127_3643708_2 Nucleotidyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004284 261.0
DYD3_k127_3643708_3 MobA-like NTP transferase domain - - - 0.00000000000000000000000000000000000000000000000000000001093 207.0
DYD3_k127_3643708_4 Predicted permease YjgP/YjgQ family K11720 - - 0.0000707 51.0
DYD3_k127_3646898_0 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479,K05708 - 1.14.12.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 554.0
DYD3_k127_3646898_1 Rieske 2Fe-2S domain protein K10619 - 1.14.12.25 0.000000000000000000000000000000000000000000000000003505 185.0
DYD3_k127_3646898_2 beta subunit - - - 0.0000000005132 65.0
DYD3_k127_3686292_0 B3/4 domain K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 1.056e-291 916.0
DYD3_k127_3686292_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008454 527.0
DYD3_k127_3686292_10 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0065003,GO:0070925,GO:0071826,GO:0071840 - 0.000000000000000000000000000000000000000000000000001586 184.0
DYD3_k127_3686292_11 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000002529 100.0
DYD3_k127_3686292_12 Ribosomal protein L33 K02913 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000002274 97.0
DYD3_k127_3686292_13 PRC-barrel domain - - - 0.00000000000000000007478 102.0
DYD3_k127_3686292_14 COG2885 outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.000000000002542 77.0
DYD3_k127_3686292_15 Integrase core domain - - - 0.000000009088 59.0
DYD3_k127_3686292_2 MotA TolQ ExbB proton channel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003111 389.0
DYD3_k127_3686292_3 Predicted membrane protein (DUF2254) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 374.0
DYD3_k127_3686292_4 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003954 350.0
DYD3_k127_3686292_5 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 343.0
DYD3_k127_3686292_6 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000336 292.0
DYD3_k127_3686292_7 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001735 254.0
DYD3_k127_3686292_8 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004582 252.0
DYD3_k127_3686292_9 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000001017 239.0
DYD3_k127_3692486_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.0 1236.0
DYD3_k127_3692486_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015627,GO:0015628,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:0098776,GO:1901265,GO:1901363,GO:1904680 - 0.0 1161.0
DYD3_k127_3692486_10 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000008209 224.0
DYD3_k127_3692486_11 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000004642 198.0
DYD3_k127_3692486_12 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000222 189.0
DYD3_k127_3692486_13 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000002622 192.0
DYD3_k127_3692486_14 PFAM MaoC domain protein dehydratase - - - 0.000000000000000000000000000000000000000000000000641 179.0
DYD3_k127_3692486_15 - - - - 0.000000000000000000000000000000000000000000000002285 194.0
DYD3_k127_3692486_16 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0000000000000000000000000000002567 124.0
DYD3_k127_3692486_17 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000003651 124.0
DYD3_k127_3692486_18 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000004379 120.0
DYD3_k127_3692486_19 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000002659 62.0
DYD3_k127_3692486_2 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002714 616.0
DYD3_k127_3692486_20 Flp/Fap pilin component K02651 - - 0.0005221 45.0
DYD3_k127_3692486_3 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009787 464.0
DYD3_k127_3692486_4 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 410.0
DYD3_k127_3692486_5 Carbon-nitrogen hydrolase K11206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007606 347.0
DYD3_k127_3692486_6 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 309.0
DYD3_k127_3692486_7 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 284.0
DYD3_k127_3692486_8 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005461 273.0
DYD3_k127_3692486_9 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001171 262.0
DYD3_k127_3697553_0 Belongs to the TPP enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006769 512.0
DYD3_k127_3697553_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008596 358.0
DYD3_k127_3697553_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000000000002969 117.0
DYD3_k127_3697553_11 enzyme of heme biosynthesis - - - 0.000000000000007445 88.0
DYD3_k127_3697553_12 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.00000000000003007 78.0
DYD3_k127_3697553_13 Putative transposase of IS4/5 family (DUF4096) - - - 0.0000000000000397 75.0
DYD3_k127_3697553_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004389 334.0
DYD3_k127_3697553_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 310.0
DYD3_k127_3697553_4 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005898 305.0
DYD3_k127_3697553_5 - - - - 0.0000000000000000000000000000000000000000000000001492 184.0
DYD3_k127_3697553_6 COG1335 Amidases related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000008413 175.0
DYD3_k127_3697553_7 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000001327 141.0
DYD3_k127_3697553_8 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.0000000000000000000000000000805 116.0
DYD3_k127_3697553_9 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000001054 121.0
DYD3_k127_3736522_0 DNA polymerase alpha chain like domain K02337 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0 1403.0
DYD3_k127_3736522_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 9.614e-318 979.0
DYD3_k127_3736522_10 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 301.0
DYD3_k127_3736522_11 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000007144 241.0
DYD3_k127_3736522_12 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000002486 204.0
DYD3_k127_3736522_13 Succinate dehydrogenase Fumarate reductase K00241 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000001218 158.0
DYD3_k127_3736522_14 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557,K03215 - 2.1.1.190,2.1.1.35 0.000000000000000000000000000000001719 132.0
DYD3_k127_3736522_15 succinate dehydrogenase K00242 - - 0.000000000000000000000000001718 117.0
DYD3_k127_3736522_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 539.0
DYD3_k127_3736522_3 MaoC like domain K14449 GO:0003674,GO:0003824,GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0045733,GO:0046395,GO:0071704,GO:0072329,GO:1901575 4.2.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007524 504.0
DYD3_k127_3736522_4 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 466.0
DYD3_k127_3736522_5 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008271 467.0
DYD3_k127_3736522_6 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 450.0
DYD3_k127_3736522_7 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 394.0
DYD3_k127_3736522_8 Ribosomal protein S2 K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 379.0
DYD3_k127_3736522_9 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 319.0
DYD3_k127_3757276_0 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072,K11076 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 411.0
DYD3_k127_3757276_1 Binding-protein-dependent transport system inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006738 407.0
DYD3_k127_3757276_2 Binding-protein-dependent transport system inner membrane component K11071 - - 0.000000000000000000000000000000000000000000000000000000000000008078 218.0
DYD3_k127_3784839_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 1.038e-209 668.0
DYD3_k127_3784839_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253 588.0
DYD3_k127_3784839_10 In Escherichia coli transcription of this gene is enhanced by polyamines K02914 - - 0.0000000000001187 71.0
DYD3_k127_3784839_2 Required for the activity of the bacterial periplasmic transport system of putrescine K11069,K11073 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 530.0
DYD3_k127_3784839_3 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 479.0
DYD3_k127_3784839_4 Glutamine amidotransferases class-II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 299.0
DYD3_k127_3784839_5 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 293.0
DYD3_k127_3784839_6 Binding-protein-dependent transport system inner membrane component K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000205 282.0
DYD3_k127_3784839_7 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002095 269.0
DYD3_k127_3784839_8 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000002361 194.0
DYD3_k127_3784839_9 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000000000000000000004279 112.0
DYD3_k127_378980_0 Exporters of the RND superfamily K07003 - - 0.0 1102.0
DYD3_k127_378980_1 Exporters of the RND superfamily K07003 - - 0.0 1073.0
DYD3_k127_378980_2 Na dependent nucleoside transporter K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 493.0
DYD3_k127_378980_3 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 395.0
DYD3_k127_378980_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008796 378.0
DYD3_k127_378980_5 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000001369 209.0
DYD3_k127_378980_6 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000000001001 148.0
DYD3_k127_3802566_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 1.989e-220 689.0
DYD3_k127_3802566_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 GO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 1.579e-205 657.0
DYD3_k127_3802566_2 Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000098 383.0
DYD3_k127_3802566_3 transport, permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 338.0
DYD3_k127_3802566_4 Rhomboid family - - - 0.000000000000000000000000000000000000000000002672 173.0
DYD3_k127_3802566_5 FecR protein - - - 0.000000000000000001688 95.0
DYD3_k127_3802566_7 - - - - 0.0000005964 60.0
DYD3_k127_3845759_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 5.943e-249 785.0
DYD3_k127_3845759_1 Glycosyl transferase family group 2 K03669 GO:0005575,GO:0016020 - 2.02e-212 681.0
DYD3_k127_3845759_2 Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) K03670 GO:0000271,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0016051,GO:0030288,GO:0030313,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042597,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0051273,GO:0051274,GO:0071704,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 566.0
DYD3_k127_3845759_3 major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006798 428.0
DYD3_k127_3845759_4 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000001209 230.0
DYD3_k127_3845759_5 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000003586 189.0
DYD3_k127_3845759_6 PAS domain - - - 0.000000000002436 75.0
DYD3_k127_3852966_0 CoA-transferase family III K01796 - 5.1.99.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 565.0
DYD3_k127_3852966_1 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 292.0
DYD3_k127_3852966_2 Phosphoglycerate mutase - - - 0.0000000000000000000000000000000000000000000000000001691 193.0
DYD3_k127_3852966_3 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.000000000000000000000000000000000000000000000115 185.0
DYD3_k127_3852966_4 DSBA-like thioredoxin domain - - - 0.00000000000000001801 83.0
DYD3_k127_3880493_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 3.414e-290 906.0
DYD3_k127_3880493_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 338.0
DYD3_k127_3880493_10 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000001013 71.0
DYD3_k127_3880493_11 Integrase core domain - - - 0.00000000006757 65.0
DYD3_k127_3880493_12 Subtilase family - - - 0.000000195 59.0
DYD3_k127_3880493_2 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008253 316.0
DYD3_k127_3880493_3 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 290.0
DYD3_k127_3880493_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000000000000000000001223 190.0
DYD3_k127_3880493_5 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000000964 171.0
DYD3_k127_3880493_6 Protein conserved in bacteria K09928 - - 0.0000000000000000000000000000000000000102 152.0
DYD3_k127_3880493_7 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000000000000004029 141.0
DYD3_k127_3880493_8 Integrase core domain - - - 0.00000000000000000000000000000000001723 138.0
DYD3_k127_3880493_9 Integrase core domain - - - 0.000000000000001318 79.0
DYD3_k127_3924603_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 456.0
DYD3_k127_3924603_1 WHG domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 290.0
DYD3_k127_3924603_2 PFAM 2-nitropropane dioxygenase NPD K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000436 278.0
DYD3_k127_3924603_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids - - - 0.00000000000000000000000000000000000000000002848 171.0
DYD3_k127_3924603_4 Protein of unknown function (DUF2852) - - - 0.00000000000000000000000000000000001386 140.0
DYD3_k127_3924603_5 SnoaL-like domain - - - 0.0000000000000000000000001427 112.0
DYD3_k127_3924603_6 Cro/C1-type HTH DNA-binding domain - - - 0.000000000000000000671 94.0
DYD3_k127_3924603_7 Proteasome-type protease K07395 - - 0.000000000000001303 77.0
DYD3_k127_3927760_0 Psort location Cytoplasmic, score 7.50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 610.0
DYD3_k127_3927760_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 457.0
DYD3_k127_3927760_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 422.0
DYD3_k127_3927760_3 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000002388 194.0
DYD3_k127_3928245_0 Flavin-binding monooxygenase-like K03379 - 1.14.13.22 2.946e-247 777.0
DYD3_k127_3928245_1 Protein of unknown function (DUF455) K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000005656 199.0
DYD3_k127_3928245_2 Luciferase-like monooxygenase K14733 - 1.14.13.107 0.0000000000000000000000000001051 118.0
DYD3_k127_3955474_0 Thiolase, N-terminal domain K00626 GO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006805,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016020,GO:0016042,GO:0016054,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019439,GO:0019748,GO:0019752,GO:0030258,GO:0030312,GO:0032787,GO:0033554,GO:0033812,GO:0034440,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044464,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 602.0
DYD3_k127_3955474_1 Ring hydroxylating alpha subunit (catalytic domain) K16319 - 1.14.12.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 583.0
DYD3_k127_3955474_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K05783 - 1.3.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 344.0
DYD3_k127_3955474_3 Taurine catabolism dioxygenase TauD, TfdA family K22303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 299.0
DYD3_k127_3955474_4 Aromatic-ring-hydroxylating dioxygenase, beta subunit - - - 0.00000000000000000000000000000000000000000000000000129 187.0
DYD3_k127_39562_0 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 381.0
DYD3_k127_39562_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 330.0
DYD3_k127_39562_2 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 306.0
DYD3_k127_39562_3 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007686 270.0
DYD3_k127_39562_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000005325 195.0
DYD3_k127_39562_5 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000006916 143.0
DYD3_k127_3977851_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0 1234.0
DYD3_k127_3977851_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000004712 221.0
DYD3_k127_3977851_11 Transposase DDE domain - - - 0.0001254 46.0
DYD3_k127_3977851_12 transposase activity - - - 0.0005081 44.0
DYD3_k127_3977851_2 similarity to GB CAD86359.1 - - - 0.000000000000000000000000000000000000000000000000000000456 195.0
DYD3_k127_3977851_3 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000000000000000000000000000092 179.0
DYD3_k127_3977851_4 Transposase DDE domain - - - 0.00000000000000000000000000000000000000002192 157.0
DYD3_k127_3977851_5 - - - - 0.0000000000000002369 81.0
DYD3_k127_3977851_6 transposase activity - - - 0.000000000005857 70.0
DYD3_k127_3977851_7 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.00000000005891 63.0
DYD3_k127_3977851_8 Glycosyl hydrolase 36 superfamily, catalytic domain K13688,K18786 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.321 0.0000000001101 63.0
DYD3_k127_3977851_9 LTXXQ motif family protein - - - 0.00001842 54.0
DYD3_k127_3984181_0 GHMP kinases N terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000734 446.0
DYD3_k127_3984181_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 413.0
DYD3_k127_3984181_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 396.0
DYD3_k127_3984181_3 Domain of unknown function (DUF3473) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 350.0
DYD3_k127_3984181_4 COG3267 Type II secretory pathway, component ExeA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001526 263.0
DYD3_k127_3984181_5 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000000000000000000000000000000000000000000000000000000000000001323 244.0
DYD3_k127_3984181_6 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00966,K15669 - 2.7.7.13,2.7.7.71 0.000000000000000000007266 93.0
DYD3_k127_4000446_0 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 300.0
DYD3_k127_4000446_1 histidine kinase HAMP region domain protein K03406 - - 0.00000000000000000000000000000003124 145.0
DYD3_k127_4014512_0 4Fe-4S dicluster domain - - - 1.053e-300 941.0
DYD3_k127_4014512_1 flavoprotein involved in K transport - - - 1.625e-231 729.0
DYD3_k127_4014512_10 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 345.0
DYD3_k127_4014512_11 Cytochrome c3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 349.0
DYD3_k127_4014512_12 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 331.0
DYD3_k127_4014512_13 Dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 320.0
DYD3_k127_4014512_14 Protein of unknown function (DUF1365) K09701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008876 290.0
DYD3_k127_4014512_15 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002995 268.0
DYD3_k127_4014512_16 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001522 268.0
DYD3_k127_4014512_17 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000003637 243.0
DYD3_k127_4014512_18 COG4235 Cytochrome c biogenesis factor K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000004027 253.0
DYD3_k127_4014512_19 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000001162 230.0
DYD3_k127_4014512_2 Luciferase-like monooxygenase - - - 2.305e-212 666.0
DYD3_k127_4014512_20 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000000000000000000000000000000000000000004179 219.0
DYD3_k127_4014512_21 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.000000000000000000000000000000000000000000000001028 179.0
DYD3_k127_4014512_22 Universal stress protein - - - 0.000000000000000000000000000000000000000000000007419 181.0
DYD3_k127_4014512_23 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000003254 115.0
DYD3_k127_4014512_25 Rod binding protein - - - 0.000000000000000000003294 98.0
DYD3_k127_4014512_26 Type IV pili methyl-accepting chemotaxis transducer N-term - - - 0.00000000001988 70.0
DYD3_k127_4014512_27 - - - - 0.00000000005572 69.0
DYD3_k127_4014512_3 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 524.0
DYD3_k127_4014512_4 NAD FAD-binding protein K06954 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 493.0
DYD3_k127_4014512_5 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008132 484.0
DYD3_k127_4014512_6 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 472.0
DYD3_k127_4014512_7 synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0008825,GO:0009987,GO:0016740,GO:0016741,GO:0030258,GO:0032259,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 468.0
DYD3_k127_4014512_8 MFS/sugar transport protein K03292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 433.0
DYD3_k127_4014512_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 360.0
DYD3_k127_4019243_0 Protein of unknown function (DUF1302) - - - 0.000000000000000000000000000000000000000000000000000000000001392 233.0
DYD3_k127_4019243_1 Protein of unknown function (DUF1302) - - - 0.0000000000000000000000000002468 121.0
DYD3_k127_4026958_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 4.424e-214 670.0
DYD3_k127_4026958_1 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 422.0
DYD3_k127_4026958_2 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 420.0
DYD3_k127_4026958_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 355.0
DYD3_k127_4026958_4 Alcohol dehydrogenase GroES-like domain K00004 - 1.1.1.303,1.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 345.0
DYD3_k127_4026958_5 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000001271 204.0
DYD3_k127_4026958_6 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.0000000000000000000003117 101.0
DYD3_k127_4029608_0 ClpX C4-type zinc finger K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 7.088e-231 720.0
DYD3_k127_4029608_1 COG0659 Sulfate permease and related transporters (MFS superfamily) K03321 - - 1.816e-219 690.0
DYD3_k127_4029608_10 trans-aconitate K00598 - 2.1.1.144 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 291.0
DYD3_k127_4029608_11 F420-dependent oxidoreductase, Rv2161c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 291.0
DYD3_k127_4029608_12 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000842 261.0
DYD3_k127_4029608_13 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001264 256.0
DYD3_k127_4029608_14 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000001674 205.0
DYD3_k127_4029608_15 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.00000000000000000000000000000000000000000000000000004615 191.0
DYD3_k127_4029608_16 Cold shock protein domain K03704 - - 0.0000000000000000000000000000000000000000000002513 172.0
DYD3_k127_4029608_17 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000001887 156.0
DYD3_k127_4029608_18 O-Antigen ligase - - - 0.00000000000000000000000000000000000005564 158.0
DYD3_k127_4029608_19 Trm112p-like protein K09791 - - 0.000000000000000000000006148 103.0
DYD3_k127_4029608_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006201 580.0
DYD3_k127_4029608_20 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000007545 60.0
DYD3_k127_4029608_22 - - - - 0.00000003652 55.0
DYD3_k127_4029608_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 451.0
DYD3_k127_4029608_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 443.0
DYD3_k127_4029608_5 Glycosyl transferase family group 2 K20327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 413.0
DYD3_k127_4029608_6 Peptidase family S58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 382.0
DYD3_k127_4029608_7 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 342.0
DYD3_k127_4029608_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 344.0
DYD3_k127_4029608_9 Tetratricopeptide repeat K03671,K05838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 334.0
DYD3_k127_4090971_0 FtsX-like permease family K02004 - - 1.066e-253 808.0
DYD3_k127_4090971_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 603.0
DYD3_k127_4090971_10 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000482 223.0
DYD3_k127_4090971_11 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000006494 188.0
DYD3_k127_4090971_12 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000000003053 160.0
DYD3_k127_4090971_13 Zincin-like metallopeptidase - - - 0.0000000000000000000000000000000000000003432 154.0
DYD3_k127_4090971_14 protein methyltransferase activity - - - 0.00000000000000000000000000000000001135 147.0
DYD3_k127_4090971_15 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000001072 134.0
DYD3_k127_4090971_16 Protein of unknown function (DUF721) - - - 0.000000000000000000000000000643 119.0
DYD3_k127_4090971_18 PEP-CTERM motif - - - 0.0003341 44.0
DYD3_k127_4090971_2 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 530.0
DYD3_k127_4090971_3 COG1194 A G-specific DNA glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 394.0
DYD3_k127_4090971_4 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 388.0
DYD3_k127_4090971_5 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 380.0
DYD3_k127_4090971_6 ABC transporter K02003 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 304.0
DYD3_k127_4090971_7 Q COG2124 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004509 278.0
DYD3_k127_4090971_8 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000007768 241.0
DYD3_k127_4090971_9 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000001702 235.0
DYD3_k127_4149309_0 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 454.0
DYD3_k127_4149309_1 ParE toxin of type II toxin-antitoxin system, parDE K19092 - - 0.0000000000000000000000000000000000698 136.0
DYD3_k127_4149309_2 transcriptional regulators containing the CopG Arc MetJ DNA-binding domain K07746 - - 0.00000000000000000000000000009594 118.0
DYD3_k127_4149309_3 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000003286 84.0
DYD3_k127_4149309_4 PFAM Pentapeptide repeats (8 copies) - - - 0.00001074 57.0
DYD3_k127_4209127_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 1.378e-223 702.0
DYD3_k127_4209127_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 603.0
DYD3_k127_4209127_10 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000008631 170.0
DYD3_k127_4209127_11 membrane - - - 0.000000000000000000000000000000000000000004683 166.0
DYD3_k127_4209127_12 membrane protein, required for colicin V production K03558 - - 0.00000000000000000000000000000000000000001928 160.0
DYD3_k127_4209127_13 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000001763 133.0
DYD3_k127_4209127_14 malonyl CoA-acyl carrier protein transacylase K00645 GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.39 0.00000000002393 64.0
DYD3_k127_4209127_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 567.0
DYD3_k127_4209127_3 Glutathione S-transferase K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007121 483.0
DYD3_k127_4209127_4 Carboxylesterase family K03929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004881 411.0
DYD3_k127_4209127_5 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 350.0
DYD3_k127_4209127_6 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 342.0
DYD3_k127_4209127_7 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003581 329.0
DYD3_k127_4209127_8 Short-chain dehydrogenase reductase SDR - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000001175 247.0
DYD3_k127_4209127_9 Ribosomal protein L9, N-terminal domain K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000004475 216.0
DYD3_k127_4222406_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 537.0
DYD3_k127_4222406_1 Predicted permease YjgP/YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889 363.0
DYD3_k127_4222406_2 Predicted permease YjgP/YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003523 306.0
DYD3_k127_4222406_3 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000001432 185.0
DYD3_k127_4222406_4 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000001013 175.0
DYD3_k127_4222406_5 amidohydrolase - - - 0.00000007674 53.0
DYD3_k127_4229621_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 601.0
DYD3_k127_4229621_1 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 364.0
DYD3_k127_4229621_2 Protein of unknown function (DUF1524) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 362.0
DYD3_k127_4249284_0 Domain of unknown function DUF87 K06915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000591 503.0
DYD3_k127_4249284_1 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000001585 200.0
DYD3_k127_4249284_2 FR47-like protein K03789 - 2.3.1.128 0.00000000000000000000002336 108.0
DYD3_k127_4249284_3 PFAM peptidase M22 glycoprotease K14742 - - 0.00000000000000000003619 95.0
DYD3_k127_4249284_4 Phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.0000000003595 61.0
DYD3_k127_4252178_0 COG0859 ADP-heptose LPS heptosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 351.0
DYD3_k127_4252178_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.000000000000000000000000000000000000000000000000000000000000000000000004407 247.0
DYD3_k127_4252178_2 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.000000000000000000000001678 107.0
DYD3_k127_4252178_3 Glycosyl transferase 4-like domain - - - 0.000002018 52.0
DYD3_k127_4277701_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688,K18786 - 2.4.1.321 0.0 1054.0
DYD3_k127_4277701_1 Cyclic nucleotide-monophosphate binding domain K15861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 291.0
DYD3_k127_4277701_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002521 283.0
DYD3_k127_4277701_3 - - - - 0.0000000000000000000000003989 106.0
DYD3_k127_4278630_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 480.0
DYD3_k127_4278630_1 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 407.0
DYD3_k127_4278630_2 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000000002447 106.0
DYD3_k127_4278630_3 DnaJ molecular chaperone homology domain - - - 0.00000000000000003541 87.0
DYD3_k127_4288493_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 3.611e-247 772.0
DYD3_k127_4288493_1 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 392.0
DYD3_k127_4288493_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 336.0
DYD3_k127_4288493_3 Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system K02074,K09817 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 317.0
DYD3_k127_4288493_4 COG1108 ABC-type Mn2 Zn2 transport systems permease components K09816 GO:0000006,GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0042221,GO:0044464,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 291.0
DYD3_k127_4288493_5 involved in sulfation activity towards typical ceramide glycolipids and trehalose glycolipids K01014 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006790,GO:0008146,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016782,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0046505,GO:0046506,GO:0071704,GO:1901576 2.8.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000001523 252.0
DYD3_k127_4302900_0 COG1960 Acyl-CoA dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004255 569.0
DYD3_k127_4302900_1 acetyl-coa acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 522.0
DYD3_k127_4302900_10 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001501 251.0
DYD3_k127_4302900_11 DUF35 OB-fold domain, acyl-CoA-associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000001099 233.0
DYD3_k127_4302900_12 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000323 198.0
DYD3_k127_4302900_13 DNA primase - - - 0.00006318 45.0
DYD3_k127_4302900_2 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 513.0
DYD3_k127_4302900_3 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003428 480.0
DYD3_k127_4302900_4 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 472.0
DYD3_k127_4302900_5 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 377.0
DYD3_k127_4302900_6 Belongs to the HpcH HpaI aldolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007822 368.0
DYD3_k127_4302900_7 reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 341.0
DYD3_k127_4302900_8 Glutathione S-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 299.0
DYD3_k127_4302900_9 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003111 278.0
DYD3_k127_4321196_0 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005553 467.0
DYD3_k127_4321196_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009352 440.0
DYD3_k127_4321196_2 Belongs to the TrpC family K01609,K13498 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 352.0
DYD3_k127_4321196_3 Anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 290.0
DYD3_k127_4321196_4 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002079 282.0
DYD3_k127_4321196_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000473 209.0
DYD3_k127_4321196_6 TIGRFAM outer membrane autotransporter barrel domain protein - - - 0.000000004132 66.0
DYD3_k127_4321909_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 307.0
DYD3_k127_4321909_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005011 301.0
DYD3_k127_4321909_2 PFAM Enoyl-CoA hydratase isomerase K01692,K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000155 260.0
DYD3_k127_4321909_3 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000002166 130.0
DYD3_k127_4321909_4 Protein of unknown function (DUF1491) - - - 0.000000000000000000000000002125 115.0
DYD3_k127_4343684_0 phage phi-C31 gp36 major capsid-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007077 521.0
DYD3_k127_4343684_1 Phage tail tube protein - - - 0.000000000000000000000000000000000000000000000000000000004432 201.0
DYD3_k127_4343684_2 Phage gp6-like head-tail connector protein - - - 0.0000000000000000000000000000000009081 141.0
DYD3_k127_4343684_3 Phage tail tube protein, GTA-gp10 - - - 0.0000000000000000000000000000001146 127.0
DYD3_k127_4343684_4 Protein of unknown function (DUF3168) - - - 0.000000000000000000000001658 110.0
DYD3_k127_4343684_5 Phage head-tail joining protein - - - 0.00000000000003338 76.0
DYD3_k127_4343684_6 - - - - 0.00004094 54.0
DYD3_k127_4371622_0 Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively K05708,K14748 - 1.14.12.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952 506.0
DYD3_k127_4371622_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002438 252.0
DYD3_k127_4371622_2 dioxygenase subunit beta K05709,K14749,K15750 - 1.14.12.18,1.14.12.19 0.00000000000000000000000000000000000000000000000000005152 193.0
DYD3_k127_4371622_3 Glycosyl transferase, family 2 - - - 0.0000000000000000001297 89.0
DYD3_k127_4373671_0 Phosphofructokinase K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 564.0
DYD3_k127_4373671_1 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007083 416.0
DYD3_k127_4373671_10 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0003674,GO:0003824,GO:0004735,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001334 270.0
DYD3_k127_4373671_11 CbiX K03795 - 4.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000003745 250.0
DYD3_k127_4373671_12 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000000000000000000000000001752 243.0
DYD3_k127_4373671_13 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000000000166 162.0
DYD3_k127_4373671_14 Putative bacterial sensory transduction regulator - - - 0.00000000000000000000000000000000000000002618 158.0
DYD3_k127_4373671_15 Protein of unknown function (DUF1232) - - - 0.0000000000000000000000000000000003063 135.0
DYD3_k127_4373671_16 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 0.000000000000000005371 88.0
DYD3_k127_4373671_17 sugar phosphatases of the HAD superfamily - - - 0.000000000000000007751 87.0
DYD3_k127_4373671_18 Protein required for attachment to host cells - - - 0.0004857 43.0
DYD3_k127_4373671_2 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 392.0
DYD3_k127_4373671_3 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 395.0
DYD3_k127_4373671_4 Belongs to the peptidase M50B family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003023 391.0
DYD3_k127_4373671_5 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 394.0
DYD3_k127_4373671_6 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 368.0
DYD3_k127_4373671_7 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007206 337.0
DYD3_k127_4373671_8 Nitroreductase family K04719 - 1.13.11.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005703 270.0
DYD3_k127_4373671_9 Putative diguanylate phosphodiesterase K13593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002063 278.0
DYD3_k127_4436347_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008236 604.0
DYD3_k127_4436347_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000718 533.0
DYD3_k127_4436347_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162,K00627 - 1.2.4.1,2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 491.0
DYD3_k127_4439607_0 Aldehyde dehydrogenase family K00138,K09472,K12254 - 1.2.1.54,1.2.1.99 3.359e-235 736.0
DYD3_k127_4439607_1 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K10764 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 548.0
DYD3_k127_4439607_10 positive regulation of type IV pilus biogenesis K07343 - - 0.00000000004906 69.0
DYD3_k127_4439607_2 Phosphatase K07093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 492.0
DYD3_k127_4439607_3 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 424.0
DYD3_k127_4439607_4 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K00057 GO:0003674,GO:0003824,GO:0006072,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0047952,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 360.0
DYD3_k127_4439607_5 EVE domain - - - 0.000000000000000000000000000000000000000000000000000000000000004407 222.0
DYD3_k127_4439607_6 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000000000000000000000000000001945 190.0
DYD3_k127_4439607_7 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000003697 183.0
DYD3_k127_4439607_8 protein conserved in bacteria K09780 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000002057 106.0
DYD3_k127_4439607_9 LysR substrate binding domain - - - 0.00000000000000000000002615 108.0
DYD3_k127_4444112_0 Aerotolerance regulator N-terminal - - - 2.711e-253 814.0
DYD3_k127_4444112_1 membrane - - - 7.697e-210 673.0
DYD3_k127_4444112_10 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 296.0
DYD3_k127_4444112_11 DJ-1/PfpI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007673 273.0
DYD3_k127_4444112_12 Serine aminopeptidase, S33 K01048 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000004941 263.0
DYD3_k127_4444112_13 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004366 261.0
DYD3_k127_4444112_14 Protein of unknown function (DUF1285) K09986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001679 243.0
DYD3_k127_4444112_15 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000000000000000000000000000000000000000002491 215.0
DYD3_k127_4444112_16 Outer membrane protein beta-barrel domain K16079 - - 0.00000000000000000000000000000000000000000000000000000000008519 213.0
DYD3_k127_4444112_17 molybdopterin-guanine dinucleotide biosynthesis protein K03753 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000009904 206.0
DYD3_k127_4444112_18 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000003211 188.0
DYD3_k127_4444112_19 Tetratricopeptide repeats - - - 0.00000000001485 76.0
DYD3_k127_4444112_2 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 2.849e-206 664.0
DYD3_k127_4444112_20 - - - - 0.000000002413 61.0
DYD3_k127_4444112_21 sterol carrier protein - - - 0.0000001463 59.0
DYD3_k127_4444112_22 Putative ATPase subunit of terminase (gpP-like) K07483 - - 0.0009163 43.0
DYD3_k127_4444112_3 ATPase family associated with various cellular activities (AAA) K03924 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 480.0
DYD3_k127_4444112_4 Poly A polymerase head domain K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007952 452.0
DYD3_k127_4444112_5 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 437.0
DYD3_k127_4444112_6 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005425 376.0
DYD3_k127_4444112_7 CDP-glucose 4,6-dehydratase K01709 - 4.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006185 353.0
DYD3_k127_4444112_8 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 306.0
DYD3_k127_4444112_9 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 309.0
DYD3_k127_4505473_0 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007494 443.0
DYD3_k127_4505473_1 Dimerisation domain of Zinc Transporter K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 317.0
DYD3_k127_4505473_2 DnaJ C terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 295.0
DYD3_k127_4505473_3 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000001158 225.0
DYD3_k127_4505473_4 17 kDa outer membrane surface antigen - - - 0.00000000000000000000000000000000000000000000003577 174.0
DYD3_k127_4514079_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 5.309e-241 762.0
DYD3_k127_4514079_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000007237 197.0
DYD3_k127_4514079_2 peroxidase K07223 - - 0.0000000000000000000000008829 110.0
DYD3_k127_4514079_3 domain, Protein - - - 0.00000000000000006994 83.0
DYD3_k127_4521459_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1157.0
DYD3_k127_4521459_1 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 3.001e-305 942.0
DYD3_k127_4521459_10 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001985 262.0
DYD3_k127_4521459_11 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.0000000000000000000000000000000000000000000000000000000005371 211.0
DYD3_k127_4521459_12 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.0000000000000000000000000000000000000000000000000005717 188.0
DYD3_k127_4521459_13 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000004313 175.0
DYD3_k127_4521459_14 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000000006167 166.0
DYD3_k127_4521459_15 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.00000000000000000000000000000000000009987 148.0
DYD3_k127_4521459_16 Ribosomal protein S20 K02968 - - 0.00001591 47.0
DYD3_k127_4521459_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 576.0
DYD3_k127_4521459_3 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 509.0
DYD3_k127_4521459_4 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 450.0
DYD3_k127_4521459_5 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000564 389.0
DYD3_k127_4521459_6 ABC transporter K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 362.0
DYD3_k127_4521459_7 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 356.0
DYD3_k127_4521459_8 ATPases associated with a variety of cellular activities K11963 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006134 338.0
DYD3_k127_4521459_9 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 339.0
DYD3_k127_4578640_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 569.0
DYD3_k127_4578640_1 Acyl-CoA dehydrogenase, C-terminal domain K04117 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008893 534.0
DYD3_k127_4578640_10 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.000000000000000000000000001058 119.0
DYD3_k127_4578640_11 Alpha/beta hydrolase family - - - 0.00000000000000000000000006154 107.0
DYD3_k127_4578640_12 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000395 112.0
DYD3_k127_4578640_2 Belongs to the enoyl-CoA hydratase isomerase family. MenB subfamily K07536 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 428.0
DYD3_k127_4578640_3 Enoyl-(Acyl carrier protein) reductase K00059,K07535 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 380.0
DYD3_k127_4578640_4 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009032 378.0
DYD3_k127_4578640_5 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 343.0
DYD3_k127_4578640_6 Enoyl-CoA hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 310.0
DYD3_k127_4578640_7 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000003019 199.0
DYD3_k127_4578640_8 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.000000000000000000000000000000000000000000009854 167.0
DYD3_k127_4578640_9 Cytochrome P460 - - - 0.00000000000000000000000000000000000000000007081 171.0
DYD3_k127_4592743_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 336.0
DYD3_k127_4592743_1 EAL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 323.0
DYD3_k127_4592743_2 Protein of unknown function (DUF1178) - - - 0.00000000000000000000000000000000000001817 149.0
DYD3_k127_4592743_3 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.000000003482 59.0
DYD3_k127_4592743_4 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00002435 51.0
DYD3_k127_4619379_0 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 1.722e-204 646.0
DYD3_k127_4619379_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00758 - 2.4.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 584.0
DYD3_k127_4619379_2 E1-E2 ATPase K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 533.0
DYD3_k127_4619379_3 polyphosphate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007262 383.0
DYD3_k127_4619379_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 341.0
DYD3_k127_463979_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.0 3262.0
DYD3_k127_463979_1 ErfK YbiS YcfS YnhG family protein K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004391 392.0
DYD3_k127_463979_2 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 296.0
DYD3_k127_463979_3 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007005 271.0
DYD3_k127_463979_4 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008893 242.0
DYD3_k127_463979_5 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000000000000001572 200.0
DYD3_k127_463979_6 Hsp20/alpha crystallin family K13993 - - 0.00000000000000005309 83.0
DYD3_k127_466959_0 elongation factor G K02355 - - 1.723e-244 771.0
DYD3_k127_466959_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 449.0
DYD3_k127_466959_2 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.00000000000000000000000000000000000000008597 156.0
DYD3_k127_4690618_0 Asparagine synthase K01953 - 6.3.5.4 1.682e-229 724.0
DYD3_k127_4690618_1 With MotB forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 405.0
DYD3_k127_4690618_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 396.0
DYD3_k127_4690618_3 (LPS) heptosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 342.0
DYD3_k127_4690618_4 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 299.0
DYD3_k127_4690618_5 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 301.0
DYD3_k127_4690618_6 Belongs to the GcvT family K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002764 256.0
DYD3_k127_4690618_7 Ribosomal protein S21 K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000839 109.0
DYD3_k127_4690618_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000002892 75.0
DYD3_k127_4691606_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 401.0
DYD3_k127_4691606_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000909 336.0
DYD3_k127_4691606_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001345 272.0
DYD3_k127_4691606_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000002019 213.0
DYD3_k127_4691606_4 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.00000000000000000000000000000000001064 137.0
DYD3_k127_4754152_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1141.0
DYD3_k127_4754152_1 AAA domain (dynein-related subfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 488.0
DYD3_k127_4754152_2 Oxidoreductase K19746 - 1.4.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 329.0
DYD3_k127_4754152_3 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000000000000007141 188.0
DYD3_k127_4754152_4 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.00000000000000000000000000000000000000000005324 171.0
DYD3_k127_4754152_5 protein conserved in bacteria K09989 - - 0.000000000000000000000000000000000000001146 150.0
DYD3_k127_4754152_6 Histidine kinase - - - 0.0000000000000000003247 93.0
DYD3_k127_4774210_0 HemY protein N-terminus K02498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003185 287.0
DYD3_k127_4774210_1 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000001276 197.0
DYD3_k127_4774210_2 Mitochondrial inner membrane protein - - - 0.000000000000000000003801 106.0
DYD3_k127_4774210_3 Phage-associated protein - - - 0.000000000005107 66.0
DYD3_k127_4774210_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000002897 49.0
DYD3_k127_4882072_0 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000004118 180.0
DYD3_k127_4882072_1 Sel1 domain protein repeat-containing protein K07126 - - 0.00000000000000000000000000000000000000000000494 166.0
DYD3_k127_4882072_2 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01768,K01769 - 4.6.1.1,4.6.1.2 0.00000000000000000000000000000000000001852 161.0
DYD3_k127_4886508_0 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00362 - 1.7.1.15 0.0 1193.0
DYD3_k127_4886508_1 BFD-like [2Fe-2S] binding domain K00372 - - 0.0 1035.0
DYD3_k127_4886508_2 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009732 314.0
DYD3_k127_4886508_3 Domain of unknown function (DUF4202) - - - 0.000000000000000000000000000000000000000000000000000000000002389 214.0
DYD3_k127_4886508_4 Rieske-like [2Fe-2S] domain - - - 0.0000000000000000000000000000000000009529 141.0
DYD3_k127_4886508_5 transcriptional regulator K10913 - - 0.0000000000000000000000000001121 120.0
DYD3_k127_4886508_6 Acyltransferase family - - - 0.0000000000000005364 80.0
DYD3_k127_4890378_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1269.0
DYD3_k127_4890378_1 Recombinase zinc beta ribbon domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008909 531.0
DYD3_k127_4890378_2 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 456.0
DYD3_k127_4890378_3 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 377.0
DYD3_k127_4890378_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 362.0
DYD3_k127_4890378_5 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 298.0
DYD3_k127_4890378_6 - - - - 0.00000000000000000000000000000000006823 141.0
DYD3_k127_491062_0 COG1138 Cytochrome c biogenesis factor K02198 - - 7.989e-276 862.0
DYD3_k127_491062_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005577 540.0
DYD3_k127_491062_10 MOSC domain containing protein K07140 - - 0.00000000000000000000000000000000000000000000001559 181.0
DYD3_k127_491062_11 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000005891 163.0
DYD3_k127_491062_12 - - - - 0.000000000000000000000000000000000000003922 151.0
DYD3_k127_491062_13 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000002308 146.0
DYD3_k127_491062_14 COG1846 Transcriptional regulators - - - 0.0000000000000000000000000000000004833 137.0
DYD3_k127_491062_15 protein SCO1 SenC K07152 - - 0.0000000000000000000000000000001319 131.0
DYD3_k127_491062_16 - - - - 0.000000000000000000000000000008974 125.0
DYD3_k127_491062_17 Arc-like DNA binding domain - - - 0.000000005438 59.0
DYD3_k127_491062_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006195 317.0
DYD3_k127_491062_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004938 282.0
DYD3_k127_491062_4 Protein of unknown function (DUF3047) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002218 274.0
DYD3_k127_491062_5 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009685 244.0
DYD3_k127_491062_6 MaoC like domain - - - 0.00000000000000000000000000000000000000000000000000000000004732 208.0
DYD3_k127_491062_7 Redoxin K02199 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000001193 203.0
DYD3_k127_491062_8 MaoC like domain - - - 0.000000000000000000000000000000000000000000000000004923 186.0
DYD3_k127_491062_9 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000000000000006685 179.0
DYD3_k127_4921810_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.468e-287 890.0
DYD3_k127_4921810_1 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 556.0
DYD3_k127_4921810_10 Transposase K07483 - - 0.00000000001482 66.0
DYD3_k127_4921810_11 PFAM Helix-turn-helix - - - 0.000000007267 59.0
DYD3_k127_4921810_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 475.0
DYD3_k127_4921810_3 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000575 411.0
DYD3_k127_4921810_4 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 357.0
DYD3_k127_4921810_5 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000001118 265.0
DYD3_k127_4921810_6 Domain of unknown function (DUF4145) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000127 252.0
DYD3_k127_4921810_7 - - - - 0.0000000000000000000000000000000000000000000116 165.0
DYD3_k127_4921810_8 Protein of unknown function (DUF433) - - - 0.000000000000000000000000000000000007308 139.0
DYD3_k127_4921810_9 TIR domain - - - 0.00000000000001895 80.0
DYD3_k127_4999880_0 Threonine synthase N terminus K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 576.0
DYD3_k127_4999880_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 510.0
DYD3_k127_4999880_10 Type II secretion system (T2SS), protein M subtype b K02462 - - 0.000001456 57.0
DYD3_k127_4999880_2 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 485.0
DYD3_k127_4999880_3 Belongs to the flagella basal body rod proteins family K02396 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 462.0
DYD3_k127_4999880_4 COG1450 Type II secretory pathway, component PulD K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 439.0
DYD3_k127_4999880_5 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.0000000000000000000000000000000000000000000000000000000000000000000000007872 250.0
DYD3_k127_4999880_6 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02397 - - 0.000000000000000000000000000001143 132.0
DYD3_k127_4999880_7 PFAM Fimbrial assembly K02461 - - 0.000000000000000000000000005727 124.0
DYD3_k127_4999880_8 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 0.0000000000000000000000003544 106.0
DYD3_k127_4999880_9 - K02463 - - 0.0000001982 60.0
DYD3_k127_5005730_0 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 GO:0003674,GO:0003824,GO:0003849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009611,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0050896,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.54 2.524e-231 722.0
DYD3_k127_5005730_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.75e-221 693.0
DYD3_k127_5005730_2 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 355.0
DYD3_k127_5005730_3 - - - - 0.000000000000000000000000000000000000002422 152.0
DYD3_k127_5014598_0 Flavin-binding monooxygenase-like - - - 2.911e-257 804.0
DYD3_k127_5014598_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 394.0
DYD3_k127_5014598_2 Acyltransferase family - - - 0.000000000000003865 81.0
DYD3_k127_5014598_3 Phage Mu protein F like protein - - - 0.00000002927 60.0
DYD3_k127_5014598_4 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000008409 48.0
DYD3_k127_5014598_5 PFAM acyltransferase 3 - - - 0.0007876 47.0
DYD3_k127_5038859_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 7.004e-251 783.0
DYD3_k127_5038859_1 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 343.0
DYD3_k127_5146327_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 281.0
DYD3_k127_5146327_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000002255 198.0
DYD3_k127_5146327_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000009947 190.0
DYD3_k127_5157022_0 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase - - - 0.0 1322.0
DYD3_k127_5157022_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 7.067e-257 806.0
DYD3_k127_5157022_10 Protein of unknown function (DUF1150) - - - 0.000004284 53.0
DYD3_k127_5157022_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 398.0
DYD3_k127_5157022_3 HpcH/HpaI aldolase/citrate lyase family K01644,K14451 - 3.1.2.30,4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009807 401.0
DYD3_k127_5157022_4 Belongs to the SfsA family K06206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005804 324.0
DYD3_k127_5157022_5 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 317.0
DYD3_k127_5157022_6 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 321.0
DYD3_k127_5157022_7 molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005129 280.0
DYD3_k127_5157022_8 Belongs to the small heat shock protein (HSP20) family - - - 0.000000000000000000000000000000000000000000000000000000248 197.0
DYD3_k127_5159742_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K11177 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016903,GO:0030151,GO:0033554,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0055114 1.17.1.4 3.713e-302 943.0
DYD3_k127_5159742_1 COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM CutM homologs K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005599 351.0
DYD3_k127_5159742_2 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006407 274.0
DYD3_k127_5159742_3 ThiS family K03636 - - 0.0000000162 59.0
DYD3_k127_522933_0 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 2.493e-196 638.0
DYD3_k127_522933_1 TrkA-N domain K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 610.0
DYD3_k127_522933_2 CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 593.0
DYD3_k127_522933_3 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006807,GO:0006810,GO:0008104,GO:0008150,GO:0008152,GO:0015031,GO:0015399,GO:0015405,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0022804,GO:0022857,GO:0031224,GO:0032991,GO:0033036,GO:0042157,GO:0042160,GO:0042623,GO:0042626,GO:0042886,GO:0042953,GO:0043170,GO:0043190,GO:0043492,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008178 290.0
DYD3_k127_5236020_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 2.177e-259 827.0
DYD3_k127_5236020_1 Reductase C-terminal K00529 - 1.18.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 499.0
DYD3_k127_5236020_10 Antibiotic biosynthesis monooxygenase - - - 0.0000272 47.0
DYD3_k127_5236020_2 Prephenate dehydrogenase K00210,K00220,K04517 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0047794,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.3.1.12,1.3.1.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008721 458.0
DYD3_k127_5236020_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006046 450.0
DYD3_k127_5236020_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 GO:0003674,GO:0003824,GO:0004462,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016846,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000001558 243.0
DYD3_k127_5236020_5 chorismate mutase - - - 0.0000000000000000000000000000000000000000000000000002683 196.0
DYD3_k127_5236020_6 Ferredoxin K04755 - - 0.00000000000000000000000000000000000000000000000001623 183.0
DYD3_k127_5236020_7 Uncharacterized protein conserved in bacteria (DUF2125) - - - 0.0000000000000000000000000000002438 137.0
DYD3_k127_5236020_8 Thioesterase superfamily - - - 0.00000000000000000000000764 107.0
DYD3_k127_5236020_9 Thioesterase superfamily - - - 0.00000000000003187 78.0
DYD3_k127_5242454_0 ABC-type multidrug transport system, ATPase and permease K02021,K06147,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 580.0
DYD3_k127_5242454_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07638 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006462 446.0
DYD3_k127_5242454_2 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 406.0
DYD3_k127_5242454_3 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 309.0
DYD3_k127_5242454_4 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001215 273.0
DYD3_k127_5242454_5 COG1560 Lauroyl myristoyl acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000005384 258.0
DYD3_k127_5242454_6 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.00000000000000000000000000001648 120.0
DYD3_k127_5242454_7 Uncharacterized protein conserved in bacteria (DUF2093) - - - 0.0000000000000008811 79.0
DYD3_k127_5273610_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 508.0
DYD3_k127_5273610_1 glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 479.0
DYD3_k127_5273610_2 Belongs to the FPP GGPP synthase family K02523 GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009108,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0042180,GO:0042181,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007614 374.0
DYD3_k127_5273610_3 Methyltransferase small domain K15460 - 2.1.1.223 0.000000000000000000000000000000000000000000000000000000000000000001858 235.0
DYD3_k127_5277135_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 525.0
DYD3_k127_5277135_1 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000198 263.0
DYD3_k127_5277135_2 - - - - 0.000000000000000000000000000000000000000000000000000000008363 207.0
DYD3_k127_5277135_3 PFAM PilT protein domain protein - - - 0.0000000000000000000000000000000000000000000000000000001149 198.0
DYD3_k127_5277135_4 addiction module antidote protein HigA K21498 - - 0.00000000000000000000000000000001337 128.0
DYD3_k127_5277135_5 SpoVT / AbrB like domain - - - 0.00000000000000000007099 94.0
DYD3_k127_5277135_6 taurine catabolism dioxygenase K18057 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0016491,GO:0016705,GO:0016706,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0046483,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:1901334,GO:1901336,GO:1901360,GO:1901362,GO:1901576 1.14.11.36 0.00000000000001833 75.0
DYD3_k127_5288257_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 8.863e-245 762.0
DYD3_k127_5288257_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 6.74e-198 627.0
DYD3_k127_5288257_10 Flavoprotein involved in K transport - - - 0.0000000000000000000008152 99.0
DYD3_k127_5288257_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 556.0
DYD3_k127_5288257_3 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006172 542.0
DYD3_k127_5288257_4 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 352.0
DYD3_k127_5288257_5 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003985 314.0
DYD3_k127_5288257_6 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000006419 177.0
DYD3_k127_5288257_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000000000000000002859 161.0
DYD3_k127_5288257_8 Belongs to the CinA family - - - 0.000000000000000000000000000000000000000007686 159.0
DYD3_k127_5288257_9 Ribosomal protein S16 K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000001718 154.0
DYD3_k127_5312736_0 Leucyl-tRNA synthetase, Domain 2 K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1066.0
DYD3_k127_5312736_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 8.793e-259 812.0
DYD3_k127_5312736_2 Chromosome partitioning protein ParA K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006103 357.0
DYD3_k127_5312736_3 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 299.0
DYD3_k127_5312736_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004934 278.0
DYD3_k127_5312736_5 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000132 263.0
DYD3_k127_5312736_6 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000001228 175.0
DYD3_k127_5312736_7 Lipopolysaccharide-assembly K03643 - - 0.00000000000000000000000000344 117.0
DYD3_k127_5312876_0 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 294.0
DYD3_k127_5312876_1 Peptidase S24-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000537 280.0
DYD3_k127_5312876_2 involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007993 281.0
DYD3_k127_5312876_3 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000008724 203.0
DYD3_k127_5312876_4 Protein of unknown function (DUF952) - - - 0.000000000000000000000000000000000000000004253 157.0
DYD3_k127_5330786_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 360.0
DYD3_k127_5330786_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000001482 247.0
DYD3_k127_5330786_2 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000005964 163.0
DYD3_k127_5371898_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 3.848e-235 742.0
DYD3_k127_5371898_1 AIR synthase related protein, N-terminal domain K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 433.0
DYD3_k127_5380942_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1092.0
DYD3_k127_5380942_1 Amidohydrolase family - - - 6.702e-232 730.0
DYD3_k127_5380942_10 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 321.0
DYD3_k127_5380942_11 COG1062 Zn-dependent alcohol dehydrogenases, class III K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008479 323.0
DYD3_k127_5380942_12 ATPases associated with a variety of cellular activities K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003403 268.0
DYD3_k127_5380942_13 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000001909 256.0
DYD3_k127_5380942_14 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000001775 214.0
DYD3_k127_5380942_15 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000002137 175.0
DYD3_k127_5380942_16 Putative heavy-metal-binding - - - 0.000000000000000000000000000000000000009459 147.0
DYD3_k127_5380942_17 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000002575 141.0
DYD3_k127_5380942_18 zinc-ribbon domain - - - 0.000000000000000000000000000000002955 137.0
DYD3_k127_5380942_19 Thioredoxin-like - - - 0.0000000000000000000000000000003399 127.0
DYD3_k127_5380942_2 argininosuccinate lyase K01755 - 4.3.2.1 1.17e-209 660.0
DYD3_k127_5380942_20 cheY-homologous receiver domain K13589 - - 0.000000000000000000000000000001216 122.0
DYD3_k127_5380942_21 Regulator of CtrA degradation K13592 - - 0.00000000000000000000000128 109.0
DYD3_k127_5380942_3 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 621.0
DYD3_k127_5380942_4 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 572.0
DYD3_k127_5380942_5 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 548.0
DYD3_k127_5380942_6 de-polymerase K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 524.0
DYD3_k127_5380942_7 PFAM 2-nitropropane dioxygenase NPD K02371 - 1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 492.0
DYD3_k127_5380942_8 Domain of unknown function (DUF4175) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 425.0
DYD3_k127_5380942_9 Zinc-binding dehydrogenase K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 324.0
DYD3_k127_5384036_0 PKHD-type hydroxylase K07336 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008523 257.0
DYD3_k127_5384036_1 Glycosyl transferase 4-like - - - 0.000000000000000000000000000000000000000000166 162.0
DYD3_k127_5384036_2 photosystem II stabilization - - - 0.00000000000000000000000000135 122.0
DYD3_k127_5389903_0 A predicted alpha-helical domain with a conserved ER motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 392.0
DYD3_k127_5389903_1 A circularly permuted ATPgrasp - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001339 273.0
DYD3_k127_5389903_2 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004102 269.0
DYD3_k127_5389903_3 Proteasome-type protease K07395 - - 0.00000000000000000003047 91.0
DYD3_k127_5423705_0 PFAM Glycosyl transferase family 2 - - - 6.225e-279 876.0
DYD3_k127_5423705_1 Major Facilitator Superfamily - - - 2.996e-202 641.0
DYD3_k127_5423705_10 SMART Transport-associated and nodulation region K04065 - - 0.000000000000000000001903 99.0
DYD3_k127_5423705_11 Bacterial protein of unknown function (DUF883) - - - 0.00000005868 58.0
DYD3_k127_5423705_2 Bacterial cellulose synthase subunit K20541 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 535.0
DYD3_k127_5423705_3 HlyD membrane-fusion protein of T1SS - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 334.0
DYD3_k127_5423705_4 Glycosyl hydrolases family 8 K20542 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 322.0
DYD3_k127_5423705_5 Cellulose synthase operon protein C C-terminus (BCSC_C) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 323.0
DYD3_k127_5423705_6 Encapsulating protein for peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002669 282.0
DYD3_k127_5423705_7 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000005979 147.0
DYD3_k127_5423705_8 Evidence 4 Homologs of previously reported genes of K09700 - - 0.0000000000000000000000000000000000003485 144.0
DYD3_k127_5423705_9 PRC-barrel domain - - - 0.00000000000000000000000001321 119.0
DYD3_k127_5433956_0 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 493.0
DYD3_k127_5433956_1 Inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 288.0
DYD3_k127_5433956_2 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000006431 191.0
DYD3_k127_5433956_3 GTP-binding protein TypA K06207 - - 0.00000000006933 63.0
DYD3_k127_5434823_0 Flavoprotein involved in K transport - - - 8.716e-281 868.0
DYD3_k127_5434823_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.5.10 3.531e-224 706.0
DYD3_k127_5434823_10 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003429 280.0
DYD3_k127_5434823_11 ferredoxin K04755 - - 0.00000000000000000000000000000000000000000123 158.0
DYD3_k127_5434823_12 ArsC family - - - 0.0000000000000006226 83.0
DYD3_k127_5434823_2 cytochrome P-450 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 605.0
DYD3_k127_5434823_3 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 599.0
DYD3_k127_5434823_4 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000404 546.0
DYD3_k127_5434823_5 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 532.0
DYD3_k127_5434823_6 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009698 473.0
DYD3_k127_5434823_7 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 387.0
DYD3_k127_5434823_8 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 361.0
DYD3_k127_5434823_9 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004348 309.0
DYD3_k127_5436939_0 Elongator protein 3, MiaB family, Radical SAM K11779 - 2.5.1.77 0.0 1109.0
DYD3_k127_5436939_1 Uncharacterised protein family UPF0052 K11212 - 2.7.8.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 376.0
DYD3_k127_5436939_2 hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 302.0
DYD3_k127_5436939_3 F420-0:Gamma-glutamyl ligase K12234 - 6.3.2.31,6.3.2.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004701 284.0
DYD3_k127_5436939_4 NADP oxidoreductase coenzyme F420-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004208 258.0
DYD3_k127_5436939_5 Photosynthesis system II assembly factor YCF48 - - - 0.00000000000000000000000000000000000007418 147.0
DYD3_k127_5436939_6 Elongator protein 3, MiaB family, Radical SAM K11779 - 2.5.1.77 0.0000000000000000000000000008806 121.0
DYD3_k127_5436939_7 - - - - 0.00000000000000000000004964 102.0
DYD3_k127_5436939_8 Luciferase-like monooxygenase - - - 0.0000000000000000000001068 98.0
DYD3_k127_5439390_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006016 573.0
DYD3_k127_5439390_1 Protein of unknown function (DUF3179) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 415.0
DYD3_k127_5439390_11 Alpha/beta hydrolase family K01563 - 3.8.1.5 0.00000000000000000001428 95.0
DYD3_k127_5439390_12 general secretion pathway protein - - - 0.0000000000000000001268 98.0
DYD3_k127_5439390_13 Putative zinc-finger - - - 0.000000000000002824 77.0
DYD3_k127_5439390_14 - - - - 0.000000000002674 72.0
DYD3_k127_5439390_17 general secretion pathway protein - - - 0.000000215 61.0
DYD3_k127_5439390_18 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000007389 48.0
DYD3_k127_5439390_2 Type II secretion system (T2SS), protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 400.0
DYD3_k127_5439390_3 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 351.0
DYD3_k127_5439390_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 284.0
DYD3_k127_5439390_5 ABC transporter K01990,K19340 - - 0.000000000000000000000000000000000000000000000000000000000002055 217.0
DYD3_k127_5439390_6 Bacterial type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000009997 210.0
DYD3_k127_5439390_7 - - - - 0.0000000000000000000000000000000000000000000804 168.0
DYD3_k127_5439390_8 Pfam:N_methyl_2 - - - 0.00000000000000000000000000001286 128.0
DYD3_k127_5439390_9 - - - - 0.00000000000000000000000000007569 123.0
DYD3_k127_5456295_0 Function of homologous gene experimentally demonstrated in an other organism K03407 - 2.7.13.3 2.369e-298 944.0
DYD3_k127_5456295_1 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 6.962e-298 928.0
DYD3_k127_5456295_10 Inositol monophosphatase family K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 305.0
DYD3_k127_5456295_11 MotA/TolQ/ExbB proton channel family K02556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001305 284.0
DYD3_k127_5456295_12 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000003155 242.0
DYD3_k127_5456295_13 Response regulator receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000006162 204.0
DYD3_k127_5456295_14 Flagellar GTP-binding protein K02404 - - 0.0000000000000000000000000000000000000000000000000000000113 211.0
DYD3_k127_5456295_15 chemotaxis protein K03408 - - 0.000000000000000000000000000000000000000001312 162.0
DYD3_k127_5456295_16 Histidine phosphotransferase C-terminal domain K13588 - - 0.00000000000000000000000000000000000000001866 161.0
DYD3_k127_5456295_17 homolog of gamma-carboxymuconolactone decarboxylase subunit K01607 - 4.1.1.44 0.0000000000000000000000000000000000002364 144.0
DYD3_k127_5456295_18 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.00000000000000000000000000000000005071 137.0
DYD3_k127_5456295_19 - - - - 0.00000000000002694 78.0
DYD3_k127_5456295_2 Acyl-CoA dehydrogenase, middle domain - - - 1.373e-200 632.0
DYD3_k127_5456295_20 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) - - - 0.00000000000004665 79.0
DYD3_k127_5456295_3 ATP synthase alpha/beta family, nucleotide-binding domain K02412 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 606.0
DYD3_k127_5456295_4 Sigma-54 interaction domain K10943 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 602.0
DYD3_k127_5456295_5 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 531.0
DYD3_k127_5456295_6 Transcriptional regulatory protein, C terminal K02483,K13584 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 396.0
DYD3_k127_5456295_7 cytochrome p450 - GO:0003674,GO:0003824,GO:0004497,GO:0006066,GO:0006629,GO:0006706,GO:0006707,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008395,GO:0009056,GO:0016042,GO:0016125,GO:0016127,GO:0016491,GO:0016705,GO:0016709,GO:0036199,GO:0044238,GO:0044281,GO:0044282,GO:0046164,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901575,GO:1901615,GO:1901616,GO:1902652 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 390.0
DYD3_k127_5456295_8 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 386.0
DYD3_k127_5456295_9 COG1352 Methylase of chemotaxis methyl-accepting proteins K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006026 357.0
DYD3_k127_5459344_0 ABC-type multidrug transport system ATPase and permease K02021 - - 4.736e-290 917.0
DYD3_k127_5459344_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 2.897e-284 878.0
DYD3_k127_5459344_10 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 472.0
DYD3_k127_5459344_11 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 401.0
DYD3_k127_5459344_12 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 388.0
DYD3_k127_5459344_13 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 373.0
DYD3_k127_5459344_14 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 362.0
DYD3_k127_5459344_15 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006173 345.0
DYD3_k127_5459344_16 Hydroxymethylglutaryl-CoA lyase K01640,K18314 - 4.1.3.4,4.1.3.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 346.0
DYD3_k127_5459344_17 belongs to the nudix hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 347.0
DYD3_k127_5459344_18 Belongs to the NadC ModD family K00767,K03813 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 338.0
DYD3_k127_5459344_19 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 331.0
DYD3_k127_5459344_2 - - - - 2.881e-275 860.0
DYD3_k127_5459344_20 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 333.0
DYD3_k127_5459344_21 Mitochondrial fission ELM1 K07276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 329.0
DYD3_k127_5459344_22 Glycosyltransferase family 28 C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 314.0
DYD3_k127_5459344_23 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 304.0
DYD3_k127_5459344_24 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 300.0
DYD3_k127_5459344_25 COG0079 Histidinol-phosphate aromatic aminotransferase and cobyric acid decarboxylase K02225 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007329 297.0
DYD3_k127_5459344_26 Ribosomal protein L11 methyltransferase (PrmA) - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010565,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031974,GO:0031998,GO:0031999,GO:0032259,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043467,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045833,GO:0045922,GO:0046320,GO:0046322,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050994,GO:0050995,GO:0051341,GO:0051354,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1904732,GO:1904733,GO:1904735,GO:1904736 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000201 284.0
DYD3_k127_5459344_27 Inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000053 286.0
DYD3_k127_5459344_28 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005965 266.0
DYD3_k127_5459344_29 Diacylglycerol kinase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000059 262.0
DYD3_k127_5459344_3 Belongs to the peptidase S16 family K04076 - 3.4.21.53 2.786e-254 808.0
DYD3_k127_5459344_30 helix_turn_helix ASNC type - GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006355,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009889,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0016054,GO:0019219,GO:0019222,GO:0019752,GO:0031323,GO:0031326,GO:0042221,GO:0043200,GO:0043201,GO:0043436,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000002416 241.0
DYD3_k127_5459344_31 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001081 247.0
DYD3_k127_5459344_32 Metal dependent phosphohydrolases with conserved 'HD' motif. K06952 - - 0.000000000000000000000000000000000000000000000000000000000000000000003633 241.0
DYD3_k127_5459344_33 Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000248 240.0
DYD3_k127_5459344_34 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000003649 203.0
DYD3_k127_5459344_35 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000001707 190.0
DYD3_k127_5459344_36 protein tyrosine phosphatase - - - 0.00000000000000000000000000000000000000000000000006693 184.0
DYD3_k127_5459344_37 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000000004134 175.0
DYD3_k127_5459344_38 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000006317 176.0
DYD3_k127_5459344_39 Cyclic nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000003099 162.0
DYD3_k127_5459344_4 fatty acid alpha-oxidation K12261 GO:0001561,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016829,GO:0016830,GO:0019395,GO:0019752,GO:0019842,GO:0022607,GO:0030258,GO:0030976,GO:0031907,GO:0031974,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036094,GO:0042579,GO:0042802,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0048037,GO:0050662,GO:0051179,GO:0051234,GO:0051259,GO:0051641,GO:0051649,GO:0055114,GO:0065003,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:1901363,GO:1901575,GO:1901681 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 576.0
DYD3_k127_5459344_40 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000001267 157.0
DYD3_k127_5459344_41 relative of glutathione S-transferase, MAPEG superfamily K07136 - - 0.00000000000000000001501 97.0
DYD3_k127_5459344_42 PFAM UspA - - - 0.0000000000004611 78.0
DYD3_k127_5459344_43 PAS domain - - - 0.00000000001211 73.0
DYD3_k127_5459344_44 beta-keto acid cleavage enzyme - - - 0.000000343 53.0
DYD3_k127_5459344_5 Putative modulator of DNA gyrase K03592 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 520.0
DYD3_k127_5459344_6 Quinolinate synthetase A protein K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 508.0
DYD3_k127_5459344_7 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 473.0
DYD3_k127_5459344_8 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008003 475.0
DYD3_k127_5459344_9 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 467.0
DYD3_k127_5460460_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.0 1060.0
DYD3_k127_5460460_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 1.564e-313 974.0
DYD3_k127_5460460_10 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 458.0
DYD3_k127_5460460_11 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006459 396.0
DYD3_k127_5460460_12 Uncharacterized protein conserved in bacteria (DUF2333) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000857 381.0
DYD3_k127_5460460_13 PFAM short-chain dehydrogenase reductase SDR K13774 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 378.0
DYD3_k127_5460460_14 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 343.0
DYD3_k127_5460460_15 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 335.0
DYD3_k127_5460460_16 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00038,K17754 - 1.1.1.163,1.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 325.0
DYD3_k127_5460460_17 Enoyl-(Acyl carrier protein) reductase K00038,K17754 - 1.1.1.163,1.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004617 327.0
DYD3_k127_5460460_18 COG0591 Na proline symporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002956 290.0
DYD3_k127_5460460_19 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006177 283.0
DYD3_k127_5460460_2 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 3.917e-259 825.0
DYD3_k127_5460460_20 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.000000000000000000000000000000000000000000000000005765 186.0
DYD3_k127_5460460_21 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.00000000000000000000000000000000000000000000001193 180.0
DYD3_k127_5460460_22 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000000000000000000000001924 169.0
DYD3_k127_5460460_23 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000001086 139.0
DYD3_k127_5460460_24 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000006577 123.0
DYD3_k127_5460460_25 - - - - 0.0000000000000000000002274 103.0
DYD3_k127_5460460_26 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496 - 0.0000000000004905 70.0
DYD3_k127_5460460_27 - - - - 0.0000000000009206 75.0
DYD3_k127_5460460_28 Protein of unknown function (DUF2842) - - - 0.000000000006779 67.0
DYD3_k127_5460460_29 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000002609 59.0
DYD3_k127_5460460_3 Participates in both transcription termination and antitermination K02600 - - 5.806e-237 742.0
DYD3_k127_5460460_4 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 2.347e-212 694.0
DYD3_k127_5460460_5 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 2.828e-200 637.0
DYD3_k127_5460460_6 ammonium transporter, marine subtype K03320 - - 6.079e-196 618.0
DYD3_k127_5460460_7 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 550.0
DYD3_k127_5460460_8 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 498.0
DYD3_k127_5460460_9 Methylase involved in ubiquinone menaquinone biosynthesis K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009182 470.0
DYD3_k127_5496758_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.0 1361.0
DYD3_k127_5496758_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0000166,GO:0003674,GO:0003824,GO:0004148,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009507,GO:0009536,GO:0010035,GO:0010038,GO:0016020,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0017076,GO:0019866,GO:0030554,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0050897,GO:0055114,GO:0070469,GO:0097159,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 611.0
DYD3_k127_5496758_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 558.0
DYD3_k127_5496758_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 523.0
DYD3_k127_5496758_4 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 515.0
DYD3_k127_5496758_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006528 484.0
DYD3_k127_5496758_6 Histidyl-tRNA synthetase K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 309.0
DYD3_k127_5496758_7 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000007338 212.0
DYD3_k127_5496758_8 Nacht domain - - - 0.000000004842 61.0
DYD3_k127_5500213_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1243.0
DYD3_k127_5500213_1 Thiolase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 522.0
DYD3_k127_5500213_10 Pentapeptide repeats (8 copies) - - - 0.000000000000009447 85.0
DYD3_k127_5500213_11 COG2335, Secreted and surface protein containing fasciclin-like repeats - - - 0.0000000001215 68.0
DYD3_k127_5500213_12 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.000000008745 57.0
DYD3_k127_5500213_2 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 526.0
DYD3_k127_5500213_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005994 436.0
DYD3_k127_5500213_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 362.0
DYD3_k127_5500213_5 alpha/beta hydrolase fold K01066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 331.0
DYD3_k127_5500213_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 315.0
DYD3_k127_5500213_7 Ketopantoate reductase PanE/ApbA C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004369 251.0
DYD3_k127_5500213_8 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000001354 170.0
DYD3_k127_5500213_9 PFAM FecR protein K01179,K03933 - 3.2.1.4 0.0000000000000000000000000000007021 129.0
DYD3_k127_5529667_0 ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006894 572.0
DYD3_k127_5529667_1 Metallo-beta-lactamase superfamily K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007325 300.0
DYD3_k127_5529667_2 Protein of unknown function (DUF983) - - - 0.000000000000000000000000002139 113.0
DYD3_k127_5536771_0 COG4962 Flp pilus assembly protein, ATPase CpaF K02283 - - 5.915e-216 680.0
DYD3_k127_5536771_1 Pilus formation protein N terminal region K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 466.0
DYD3_k127_5536771_2 AAA domain K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 379.0
DYD3_k127_5536771_3 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 302.0
DYD3_k127_5536771_4 Type II secretion system (T2SS), protein F K12511 - - 0.000000000000000000000000000000000000000000000008695 178.0
DYD3_k127_5536771_5 Pilus biogenesis CpaD protein (pilus_cpaD) K02281 - - 0.0000000000000000000000007529 113.0
DYD3_k127_5553689_0 Bacterial protein of unknown function (DUF839) K07093 - - 1.65e-243 768.0
DYD3_k127_5553689_1 acetyl-coa acetyltransferase K00626 - 2.3.1.9 2.164e-195 614.0
DYD3_k127_5553689_10 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000001075 252.0
DYD3_k127_5553689_11 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000001621 244.0
DYD3_k127_5553689_12 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000001387 218.0
DYD3_k127_5553689_13 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.0000000000000000000000000000000000000000000000000000000001885 205.0
DYD3_k127_5553689_14 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000003908 199.0
DYD3_k127_5553689_15 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000004326 173.0
DYD3_k127_5553689_16 Rieske 2Fe-2S - - - 0.0000000000000000000000000000000007559 134.0
DYD3_k127_5553689_2 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 575.0
DYD3_k127_5553689_3 Glutamate-cysteine ligase family 2(GCS2) K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000822 547.0
DYD3_k127_5553689_4 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 537.0
DYD3_k127_5553689_5 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 431.0
DYD3_k127_5553689_6 cation diffusion facilitator family transporter K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 331.0
DYD3_k127_5553689_7 Hydrolases of the alpha beta superfamily K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 297.0
DYD3_k127_5553689_8 PFAM alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000082 262.0
DYD3_k127_5553689_9 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002109 260.0
DYD3_k127_5554146_0 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 584.0
DYD3_k127_5554146_1 Bacterial extracellular solute-binding protein K02048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003652 446.0
DYD3_k127_5554146_2 PFAM binding-protein-dependent transport systems inner membrane component K02046,K15496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 398.0
DYD3_k127_5554146_3 sulfate transport system, permease K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 357.0
DYD3_k127_5554146_4 Sir2 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007914 351.0
DYD3_k127_5554146_5 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004566 331.0
DYD3_k127_5554146_6 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000001305 142.0
DYD3_k127_556741_0 Methyltransferase K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000959 490.0
DYD3_k127_556741_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 440.0
DYD3_k127_556741_2 Oxygenase, catalysing oxidative methylation of damaged DNA K09990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005476 331.0
DYD3_k127_556741_3 2OG-Fe(II) oxygenase superfamily K03919 - 1.14.11.33 0.00000000000000000000000000000000000000000000000000000000000000006638 225.0
DYD3_k127_5585576_0 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.0 1127.0
DYD3_k127_5585576_1 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 393.0
DYD3_k127_5585576_2 Major facilitator superfamily K08170 - - 0.00000000000000000000000000000000000000000000000000000001826 205.0
DYD3_k127_5604391_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0045333,GO:0046459,GO:0047456,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:1901363 4.2.1.3 0.0 1324.0
DYD3_k127_5604391_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006447 556.0
DYD3_k127_5604391_10 SMP-30/Gluconolaconase/LRE-like region K14274 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007574 285.0
DYD3_k127_5604391_11 HPP family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003124 256.0
DYD3_k127_5604391_12 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.00000000000000000000000000000000000000000000000000000000000000007425 228.0
DYD3_k127_5604391_13 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000004952 189.0
DYD3_k127_5604391_14 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000000000000000003227 181.0
DYD3_k127_5604391_15 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000007698 168.0
DYD3_k127_5604391_16 GcrA cell cycle regulator K13583 - - 0.0000000000000000000000000000000000005839 145.0
DYD3_k127_5604391_17 FecR protein - - - 0.000000000000000000000000000000225 131.0
DYD3_k127_5604391_18 amine dehydrogenase activity - - - 0.0000000000000000000000000000005199 136.0
DYD3_k127_5604391_19 Ribosomal protein S20 K02968 - - 0.000000000000000000003204 97.0
DYD3_k127_5604391_2 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 553.0
DYD3_k127_5604391_20 Thioesterase superfamily - - - 0.000000000000000002558 93.0
DYD3_k127_5604391_21 Domain of unknown function (DUF4340) - - - 0.000000000000000115 92.0
DYD3_k127_5604391_22 - - - - 0.000000008812 67.0
DYD3_k127_5604391_3 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003638 425.0
DYD3_k127_5604391_4 MatE K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007395 379.0
DYD3_k127_5604391_5 ABC transporter permease K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002891 363.0
DYD3_k127_5604391_6 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 330.0
DYD3_k127_5604391_7 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 317.0
DYD3_k127_5604391_8 Enoyl-CoA hydratase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 306.0
DYD3_k127_5604391_9 Alginate export - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003886 290.0
DYD3_k127_5629564_0 Acyclic terpene utilisation family protein AtuA - - - 5.527e-213 678.0
DYD3_k127_5629564_1 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 300.0
DYD3_k127_5629564_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000003525 233.0
DYD3_k127_5629564_3 methyltransferase - - - 0.0000000000000000000000000000000000000003991 162.0
DYD3_k127_5632122_0 Acetyl-CoA dehydrogenase C-terminal like K00248,K00249,K20035 - 1.3.8.1,1.3.8.7 6.067e-216 685.0
DYD3_k127_5632122_1 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 570.0
DYD3_k127_5632122_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005926 344.0
DYD3_k127_5632122_3 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004433 280.0
DYD3_k127_5632122_4 COG2801 Transposase and inactivated derivatives K07497 - - 0.00000000000000001485 86.0
DYD3_k127_5632122_5 Flagellar biosynthesis protein, FliO - - - 0.00000000021 63.0
DYD3_k127_5632122_6 HTH-like domain - - - 0.00001072 49.0
DYD3_k127_56589_0 domain, Protein - GO:0005575,GO:0005576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 458.0
DYD3_k127_56589_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 325.0
DYD3_k127_56589_2 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000001517 224.0
DYD3_k127_56589_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000003951 170.0
DYD3_k127_5697062_0 Rieske 2Fe-2S domain protein K10619 - 1.14.12.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007279 572.0
DYD3_k127_5697062_1 Rieske 2Fe-2S domain protein K10619 - 1.14.12.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 432.0
DYD3_k127_5697062_2 COG0346 Lactoylglutathione lyase and related lyases K10621 - 1.13.11.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 350.0
DYD3_k127_5697062_3 PFAM aromatic-ring-hydroxylating dioxygenase beta subunit - - - 0.000000000000000000000000000000000000000000000000006832 186.0
DYD3_k127_5697062_4 Enoyl-(Acyl carrier protein) reductase K00019 - 1.1.1.30 0.00002074 47.0
DYD3_k127_5705171_0 Extracellular solute-binding protein K02035,K13893 - - 1.307e-240 759.0
DYD3_k127_5705171_1 Bacterial extracellular solute-binding proteins, family 5 Middle K13893 - - 2.727e-237 747.0
DYD3_k127_5705171_10 Binding-protein-dependent transport system inner membrane component K13894 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0022857,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001009 255.0
DYD3_k127_5705171_11 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000004505 216.0
DYD3_k127_5705171_12 Cytochrome c K08738 - - 0.00000000000000000000000000000000000008247 149.0
DYD3_k127_5705171_13 - - - - 0.000000000000000000000003444 113.0
DYD3_k127_5705171_14 Membrane fusogenic activity K09806 - - 0.00000000000000000006758 93.0
DYD3_k127_5705171_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 476.0
DYD3_k127_5705171_3 Prephenate dehydratase K04518 - 4.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 395.0
DYD3_k127_5705171_4 Putative S-adenosyl-L-methionine-dependent methyltransferase K00574,K18164 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 366.0
DYD3_k127_5705171_5 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 353.0
DYD3_k127_5705171_6 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005821 339.0
DYD3_k127_5705171_7 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 304.0
DYD3_k127_5705171_8 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002204 266.0
DYD3_k127_5705171_9 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000007381 262.0
DYD3_k127_570799_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.086e-208 655.0
DYD3_k127_570799_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 391.0
DYD3_k127_570799_2 Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5- (5- phosphoribosylamino)methylideneamino imidazole-4-carboxamide K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004377 348.0
DYD3_k127_570799_3 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 327.0
DYD3_k127_570799_4 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002683 279.0
DYD3_k127_570799_5 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001719 276.0
DYD3_k127_570799_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000001039 198.0
DYD3_k127_570799_7 PFAM phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.00000000000000000003706 96.0
DYD3_k127_570799_8 Protein of unknown function (DUF2628) - - - 0.000000000000000003222 91.0
DYD3_k127_5755172_0 DNA helicase K03654 - 3.6.4.12 2.794e-232 733.0
DYD3_k127_5755172_1 ABC transporter K06158 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 6.631e-231 732.0
DYD3_k127_5755172_2 Major Facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 433.0
DYD3_k127_5755172_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 346.0
DYD3_k127_5755172_4 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 294.0
DYD3_k127_5755172_5 OmpW family K07275 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004549 250.0
DYD3_k127_5755172_6 Belongs to the globin family K05916 - 1.14.12.17 0.000000000000000000000000000000000000000000000000007877 184.0
DYD3_k127_5755172_7 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.000000000000000001281 87.0
DYD3_k127_5755172_8 Phosphoadenosine phosphosulfate reductase family K00390 - 1.8.4.10,1.8.4.8 0.000000000005044 69.0
DYD3_k127_5758225_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 1.382e-251 786.0
DYD3_k127_5758225_1 Belongs to the thiolase family K00626 - 2.3.1.9 1.55e-198 625.0
DYD3_k127_5758225_10 Polyhydroxyalkanoate synthesis repressor - - - 0.00000000000000000000000000000000000000000000000000001327 197.0
DYD3_k127_5758225_11 - - - - 0.00002144 51.0
DYD3_k127_5758225_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 500.0
DYD3_k127_5758225_3 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023,K00059 - 1.1.1.100,1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 349.0
DYD3_k127_5758225_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 336.0
DYD3_k127_5758225_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 301.0
DYD3_k127_5758225_6 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004705 283.0
DYD3_k127_5758225_7 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000013 267.0
DYD3_k127_5758225_8 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000002768 241.0
DYD3_k127_5758225_9 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000002707 199.0
DYD3_k127_5758358_0 copper-resistance protein, CopA family - - - 2.473e-283 880.0
DYD3_k127_5758358_1 Glycosyl hydrolase 36 superfamily, catalytic domain K13688,K18786 - 2.4.1.321 7.859e-198 647.0
DYD3_k127_5758358_11 Thioesterase superfamily - - - 0.0007022 50.0
DYD3_k127_5758358_2 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 470.0
DYD3_k127_5758358_3 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 364.0
DYD3_k127_5758358_4 Copper resistance K07233 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007332 333.0
DYD3_k127_5758358_5 Copper binding proteins, plastocyanin/azurin family - - - 0.0000000000000000000000000000000000000000000000000000242 194.0
DYD3_k127_5758358_6 Metal-sensitive transcriptional repressor - - - 0.0000000000000000000000000000001141 126.0
DYD3_k127_5758358_7 LTXXQ motif family protein - - - 0.0000000000002703 78.0
DYD3_k127_5758358_8 helix_turn_helix, Lux Regulon - - - 0.00000000001811 66.0
DYD3_k127_5758358_9 helix_turn_helix, Lux Regulon - - - 0.000000004797 58.0
DYD3_k127_5769487_0 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 460.0
DYD3_k127_5769487_1 VWA domain containing CoxE-like protein K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 455.0
DYD3_k127_5769487_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 347.0
DYD3_k127_5769487_3 Protein of unknown function (DUF3494) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002766 248.0
DYD3_k127_5769487_4 XdhC Rossmann domain K07402 - - 0.000000000000000000000000000000000000000000000000000000000006184 212.0
DYD3_k127_5769487_5 XdhC and CoxI family - - - 0.0000000000000000000000000000000000000000006624 159.0
DYD3_k127_5769487_6 Histidine kinase - - - 0.0000000000000000000000000000000000001374 145.0
DYD3_k127_5769487_7 Histidine kinase - - - 0.0000000000000000000000000000000000009372 143.0
DYD3_k127_5769487_8 AI-2E family transporter - - - 0.00000000000000000004592 94.0
DYD3_k127_5769487_9 Belongs to the UPF0337 (CsbD) family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000009903 86.0
DYD3_k127_5777047_0 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 351.0
DYD3_k127_5777047_1 Role in flagellar biosynthesis K02421 - - 0.000000000000000000000000000000000000000000000000000000000000000001102 235.0
DYD3_k127_5777047_2 Flagellar biosynthesis K02420 - - 0.000000000000000000000496 98.0
DYD3_k127_5777047_3 Flagellar hook-basal body K02408 - - 0.000000000000000139 83.0
DYD3_k127_5777047_4 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000001337 65.0
DYD3_k127_5786174_0 AMP-binding enzyme C-terminal domain K04116 - - 1.864e-197 630.0
DYD3_k127_5786174_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) K03594,K03921,K20087 - 1.14.19.11,1.14.19.2,1.14.19.26,1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 464.0
DYD3_k127_5788919_0 Flavin-binding monooxygenase-like K03379,K21730 - 1.14.13.160,1.14.13.22 3.834e-223 703.0
DYD3_k127_5788919_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006913 445.0
DYD3_k127_5788919_10 Protein of unknown function (DUF2459) - - - 0.00000000000000000000000000000000002536 145.0
DYD3_k127_5788919_11 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000000000000000000003579 96.0
DYD3_k127_5788919_2 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007698 349.0
DYD3_k127_5788919_3 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 356.0
DYD3_k127_5788919_4 KR domain K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 289.0
DYD3_k127_5788919_5 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009414 252.0
DYD3_k127_5788919_6 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000001026 244.0
DYD3_k127_5788919_7 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000001985 201.0
DYD3_k127_5788919_8 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000005168 176.0
DYD3_k127_5788919_9 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000002098 171.0
DYD3_k127_582229_0 hemolysin activation secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 408.0
DYD3_k127_582229_1 Histidine kinase K07716 - 2.7.13.3 0.0002991 53.0
DYD3_k127_5824270_0 Acetyl-CoA dehydrogenase C-terminal like K00249 - 1.3.8.7 9.339e-258 806.0
DYD3_k127_5824270_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003977 527.0
DYD3_k127_5824270_2 PFAM Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000002799 129.0
DYD3_k127_5824270_3 - - - - 0.0000000000000000000004984 101.0
DYD3_k127_5824270_4 - - - - 0.00006767 49.0
DYD3_k127_5826865_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1290.0
DYD3_k127_5826865_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 535.0
DYD3_k127_5826865_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 428.0
DYD3_k127_5826865_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000004851 250.0
DYD3_k127_5826865_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000007374 236.0
DYD3_k127_5826865_5 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000002601 213.0
DYD3_k127_5826865_6 Histidine kinase K07716 - 2.7.13.3 0.00000000000000000000000000001039 124.0
DYD3_k127_5826865_7 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.0000000000000000000000000003242 124.0
DYD3_k127_5826865_8 Histidine kinase - - - 0.0000000000000000003521 100.0
DYD3_k127_5832194_0 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009042 342.0
DYD3_k127_5832194_1 Transcriptional regulator K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 323.0
DYD3_k127_5832194_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007086 305.0
DYD3_k127_5832194_3 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001064 250.0
DYD3_k127_5832194_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000005422 221.0
DYD3_k127_5832194_5 - - - - 0.000000000000000002332 87.0
DYD3_k127_5832194_6 Protein of unknown function (DUF1328) - - - 0.00001655 49.0
DYD3_k127_5845055_0 Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 324.0
DYD3_k127_5845055_1 decarboxylase K03392 - 4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 325.0
DYD3_k127_5845055_2 L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 327.0
DYD3_k127_5845055_3 Rieske [2Fe-2S] domain K16304 - - 0.0000000000000000000000000000000007939 132.0
DYD3_k127_5880710_0 acyl-CoA dehydrogenase K16047 - 1.14.14.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 490.0
DYD3_k127_5880710_1 Flavin-binding monooxygenase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 469.0
DYD3_k127_5880710_2 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 355.0
DYD3_k127_5880710_3 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 323.0
DYD3_k127_5880710_4 Belongs to the UPF0324 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004333 322.0
DYD3_k127_5880710_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005577 301.0
DYD3_k127_5880710_6 acyl-L-homoserine-lactone lactonohydrolase activity K13075 - 3.1.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 291.0
DYD3_k127_5880710_7 divalent heavy-metal cations transporter K07238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000924 276.0
DYD3_k127_5880710_8 COG0457 FOG TPR repeat - - - 0.00000000000002406 76.0
DYD3_k127_5880710_9 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000009057 67.0
DYD3_k127_5891233_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 478.0
DYD3_k127_5891233_1 PFAM FAD dependent oxidoreductase K09471 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 309.0
DYD3_k127_5891233_2 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008879 284.0
DYD3_k127_5891233_3 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000002527 111.0
DYD3_k127_5893627_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088,K00364 GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.1.1.205,1.7.1.7 1.338e-228 717.0
DYD3_k127_5893627_1 alpha subunit K05549 - 1.14.12.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007155 599.0
DYD3_k127_5893627_2 16S rRNA methyltransferase RsmB/F K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 380.0
DYD3_k127_5893627_3 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 322.0
DYD3_k127_5893627_4 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000002352 219.0
DYD3_k127_5893627_5 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000001815 205.0
DYD3_k127_5893627_6 Lactoylglutathione lyase - - - 0.0000000000000000000000000000000000000000001964 163.0
DYD3_k127_5893627_7 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287,K18590 GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016646,GO:0019842,GO:0031406,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050896,GO:0051870,GO:0051871,GO:0055114,GO:0070401,GO:0070402,GO:0072341,GO:0097159,GO:1901265,GO:1901363 1.5.1.3 0.00000000000000000000000000000000003541 137.0
DYD3_k127_5949134_0 FAD binding domain K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 352.0
DYD3_k127_5949134_1 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 318.0
DYD3_k127_5949134_2 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009691 248.0
DYD3_k127_5949134_3 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001533 232.0
DYD3_k127_5949134_4 Histidyl-tRNA synthetase K02502 - - 0.00000000000000000004723 91.0
DYD3_k127_5955324_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 601.0
DYD3_k127_5955324_1 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006746 424.0
DYD3_k127_5955324_2 Thioesterase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 377.0
DYD3_k127_5955324_3 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.0000000000000000000000000000000000000000000000000001168 192.0
DYD3_k127_5955324_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000003583 173.0
DYD3_k127_5955324_5 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.0000000000000000000000000000000000000000007643 171.0
DYD3_k127_5955324_6 Disulfide bond formation protein DsbB K03611 - - 0.0000000000000000000000000000000000003209 146.0
DYD3_k127_5955324_7 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000002771 116.0
DYD3_k127_5981375_0 FAD binding domain K03185 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0019168,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 449.0
DYD3_k127_5981375_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 414.0
DYD3_k127_5981375_2 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 354.0
DYD3_k127_5981375_3 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005313 337.0
DYD3_k127_5981375_4 glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000002911 258.0
DYD3_k127_5981375_5 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000000000000000000000000000000000000000000004062 188.0
DYD3_k127_5981375_6 Ammonium Transporter K03320 - - 0.00000000000000000000000000000000001477 140.0
DYD3_k127_5981375_7 - - - - 0.000000000000000000001933 104.0
DYD3_k127_5981375_8 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000008467 65.0
DYD3_k127_6010751_0 AMP-binding enzyme C-terminal domain K00666,K02182 - 6.2.1.48 7.963e-272 844.0
DYD3_k127_6010751_1 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 452.0
DYD3_k127_6010751_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 303.0
DYD3_k127_6010751_3 COG1278 Cold shock proteins K03704 - - 0.000000000000000000000000002904 111.0
DYD3_k127_6010751_4 COG1278 Cold shock proteins K03704 - - 0.00000000000000000000000007655 110.0
DYD3_k127_6051048_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.114e-237 746.0
DYD3_k127_6051048_1 PFAM Binding-protein-dependent transport system inner membrane component K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005749 512.0
DYD3_k127_6051048_10 signal transduction histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 340.0
DYD3_k127_6051048_11 Transcriptional regulatory protein, C terminal K07657,K07659,K18144 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 316.0
DYD3_k127_6051048_12 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 319.0
DYD3_k127_6051048_13 Glycosyl transferase family 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 297.0
DYD3_k127_6051048_14 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000001767 265.0
DYD3_k127_6051048_15 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000000000000000000000000009676 246.0
DYD3_k127_6051048_16 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000004294 177.0
DYD3_k127_6051048_17 Bacterial transferase hexapeptide (six repeats) K18234 - - 0.000000000000000000000000000000000000000001746 162.0
DYD3_k127_6051048_18 Methyltransferase domain - - - 0.000000000000000000000000000000000000000009632 163.0
DYD3_k127_6051048_19 glycosyl transferase - - - 0.00000000000000000000000000000000000001873 156.0
DYD3_k127_6051048_2 metal-dependent hydrolase of the TIM-barrel fold K07046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005101 480.0
DYD3_k127_6051048_20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000001377 115.0
DYD3_k127_6051048_21 Hypoxia induced protein conserved region - - - 0.000000000000001395 78.0
DYD3_k127_6051048_3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 464.0
DYD3_k127_6051048_4 Electron transfer flavoprotein domain K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 458.0
DYD3_k127_6051048_5 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006062 449.0
DYD3_k127_6051048_6 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 436.0
DYD3_k127_6051048_7 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 432.0
DYD3_k127_6051048_8 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 409.0
DYD3_k127_6051048_9 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006848 383.0
DYD3_k127_6072242_0 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009028 547.0
DYD3_k127_6072242_1 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 292.0
DYD3_k127_6072242_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000007812 238.0
DYD3_k127_6072242_3 transcriptional regulator - - - 0.000000000000000000008631 93.0
DYD3_k127_6072242_4 transferase activity, transferring glycosyl groups - - - 0.00000000000000006382 83.0
DYD3_k127_6072696_0 Periplasmic binding protein domain K11959 - - 6.315e-233 726.0
DYD3_k127_6072696_1 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009344 370.0
DYD3_k127_6072696_10 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000003958 165.0
DYD3_k127_6072696_11 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 0.00000000000000000000000000000001093 129.0
DYD3_k127_6072696_12 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.0000000000000000000000000001738 123.0
DYD3_k127_6072696_13 - - - - 0.0000000000000000000000001039 110.0
DYD3_k127_6072696_2 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008497 363.0
DYD3_k127_6072696_3 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 359.0
DYD3_k127_6072696_4 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006351,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0018130,GO:0019438,GO:0032774,GO:0034335,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042493,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000003579 256.0
DYD3_k127_6072696_5 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000001482 244.0
DYD3_k127_6072696_6 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000000000006681 220.0
DYD3_k127_6072696_7 chemotaxis protein K03414 - - 0.0000000000000000000000000000000000000000000000000000000001635 213.0
DYD3_k127_6072696_8 ABC-type transport auxiliary lipoprotein component K18480 - - 0.0000000000000000000000000000000000000000000000000000000402 203.0
DYD3_k127_6072696_9 NnrU protein - - - 0.00000000000000000000000000000000000000000000000003516 186.0
DYD3_k127_6077147_0 methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 347.0
DYD3_k127_6077147_1 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001717 260.0
DYD3_k127_6077147_2 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000005694 173.0
DYD3_k127_6077147_3 N-6 DNA Methylase K03427 - 2.1.1.72 0.000000000000000000000000000000001044 133.0
DYD3_k127_6077147_4 - - - - 0.000000000000000000000000001904 119.0
DYD3_k127_6078546_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1167.0
DYD3_k127_6078546_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 308.0
DYD3_k127_6078546_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000005644 244.0
DYD3_k127_6087991_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 524.0
DYD3_k127_6087991_1 Protein of unknown function (Hypoth_ymh) - - - 0.00000000000000000000000000000000000000000000000000001705 192.0
DYD3_k127_6087991_2 - - - - 0.00000007658 55.0
DYD3_k127_6094411_0 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 325.0
DYD3_k127_6094411_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000003992 249.0
DYD3_k127_6094411_2 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000005251 224.0
DYD3_k127_6094411_3 Elongation factor Tu C-terminal domain K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000002584 179.0
DYD3_k127_6094411_4 Evidence 5 No homology to any previously reported sequences - - - 0.0000000004214 60.0
DYD3_k127_6120262_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007628 452.0
DYD3_k127_6120262_1 Domain of unknown function (DUF4170) - - - 0.000000000000000000000000003441 112.0
DYD3_k127_6120262_2 Protein of unknown function (DUF938) - - - 0.00000000000000000000538 94.0
DYD3_k127_6120262_3 PAS domain - - - 0.00002855 51.0
DYD3_k127_6128428_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 408.0
DYD3_k127_6128428_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000001375 200.0
DYD3_k127_6128428_2 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000006566 124.0
DYD3_k127_6128428_3 YGGT family K02221 - - 0.00000000000000000000000001226 115.0
DYD3_k127_618792_0 isomerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003057 275.0
DYD3_k127_618792_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000006006 227.0
DYD3_k127_618792_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000001885 194.0
DYD3_k127_6211357_0 Predicted methyltransferase regulatory domain - - - 1.251e-211 669.0
DYD3_k127_6211357_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005405 415.0
DYD3_k127_6211357_2 Phosphoenolpyruvate phosphomutase K03417 - 4.1.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 333.0
DYD3_k127_6211357_3 COG0694 Thioredoxin-like proteins and domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006518 265.0
DYD3_k127_6211357_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001652 264.0
DYD3_k127_6211357_5 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000008365 224.0
DYD3_k127_6211357_6 FlgJ-related protein K03796 - - 0.0000000000000000000000000000000000000000000000000000002419 207.0
DYD3_k127_6211357_7 SapC - - - 0.00000000000000000000000000000000000000000000000001297 189.0
DYD3_k127_6211357_8 Phospholipid methyltransferase - - - 0.00000000000000000000000000000000000003039 151.0
DYD3_k127_624067_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1613.0
DYD3_k127_624067_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 5.511e-261 816.0
DYD3_k127_624067_10 - - - - 0.000000000000000000000000000000000000007483 149.0
DYD3_k127_624067_11 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.000000000000000000000733 96.0
DYD3_k127_624067_2 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 6.435e-217 687.0
DYD3_k127_624067_3 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 570.0
DYD3_k127_624067_4 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 538.0
DYD3_k127_624067_5 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 547.0
DYD3_k127_624067_6 Taurine catabolism dioxygenase TauD, TfdA family K03119,K22303 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 389.0
DYD3_k127_624067_7 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000001986 232.0
DYD3_k127_624067_8 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000001853 233.0
DYD3_k127_624067_9 Yqey-like protein K09117 - - 0.000000000000000000000000000000000000000004305 161.0
DYD3_k127_6266647_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003583 462.0
DYD3_k127_6266647_1 ribonuclease, Rne Rng family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 370.0
DYD3_k127_6266647_2 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000001461 223.0
DYD3_k127_6266647_3 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000000000000000333 190.0
DYD3_k127_6266647_4 Transcriptional regulatory protein, C terminal K07659 - - 0.000000000000000000000000000000000000000000000000001733 187.0
DYD3_k127_6266647_5 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000001578 136.0
DYD3_k127_6266647_6 Resolvase - - - 0.00000004624 58.0
DYD3_k127_6312514_0 Dehydrogenase E1 component K11381,K21416 - 1.2.4.4 1.811e-293 915.0
DYD3_k127_6312514_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895,K01907 - 6.2.1.1,6.2.1.16 1.271e-252 792.0
DYD3_k127_6312514_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 373.0
DYD3_k127_6312514_3 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000001071 214.0
DYD3_k127_6312514_4 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000001363 156.0
DYD3_k127_6312514_5 Phosphopantetheine attachment site - - - 0.000000000000000002529 89.0
DYD3_k127_6313392_0 COG2211 Na melibiose symporter and related transporters K03292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 323.0
DYD3_k127_6313392_1 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007478 254.0
DYD3_k127_6313392_2 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000163 191.0
DYD3_k127_6313392_3 - - - - 0.00000000000000000000000000000000000000007687 154.0
DYD3_k127_6313392_4 response regulator K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.00000000000000000000000000003238 119.0
DYD3_k127_6334348_0 An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 3.001e-205 647.0
DYD3_k127_6334348_1 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 512.0
DYD3_k127_6334348_2 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 317.0
DYD3_k127_6334348_3 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0044424,GO:0044464,GO:0140096 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 299.0
DYD3_k127_6334348_4 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000002734 203.0
DYD3_k127_6334348_5 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000000000000002691 201.0
DYD3_k127_6334348_6 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000003684 186.0
DYD3_k127_6334348_7 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 GO:0003674,GO:0003824,GO:0003989,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009305,GO:0009987,GO:0016049,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576 - 0.000000000000000000000000000000000000000000003402 168.0
DYD3_k127_6334348_8 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.000000000000000000000000000000000000000000004663 168.0
DYD3_k127_6347524_0 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 451.0
DYD3_k127_6347524_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 368.0
DYD3_k127_6347524_2 Belongs to the CinA family K03743 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000001609 220.0
DYD3_k127_6347524_3 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000000003942 190.0
DYD3_k127_6347524_4 Methyltransferase FkbM domain - - - 0.00000000001862 70.0
DYD3_k127_6363399_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 3.06e-206 652.0
DYD3_k127_6363399_1 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 552.0
DYD3_k127_6363399_10 Cell wall formation K00075 - 1.3.1.98 0.000000000006114 69.0
DYD3_k127_6363399_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 529.0
DYD3_k127_6363399_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007348 506.0
DYD3_k127_6363399_4 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01928,K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 458.0
DYD3_k127_6363399_5 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 443.0
DYD3_k127_6363399_6 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 418.0
DYD3_k127_6363399_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 340.0
DYD3_k127_6363399_8 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000003243 235.0
DYD3_k127_6363399_9 secreted (periplasmic) protein - - - 0.00000000000000005728 85.0
DYD3_k127_6366195_0 Aspartate tyrosine aromatic aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 493.0
DYD3_k127_6366195_1 Toxic component of a toxin-antitoxin (TA) module. An RNase K07062 - - 0.00000000000000000000000000000000000000000000000001028 183.0
DYD3_k127_6366195_2 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000005551 143.0
DYD3_k127_6366195_3 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.0000000000000000000002908 100.0
DYD3_k127_6406600_0 Cysteine-rich domain K00113 - 1.1.5.3 3.893e-217 682.0
DYD3_k127_6406600_1 Sulfate permease family K03321 - - 1.586e-214 680.0
DYD3_k127_6406600_10 COG2942 N-acyl-D-glucosamine 2-epimerase K01787,K01809 - 5.1.3.8,5.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 305.0
DYD3_k127_6406600_11 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 294.0
DYD3_k127_6406600_12 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 308.0
DYD3_k127_6406600_13 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006186 286.0
DYD3_k127_6406600_14 May be involved in the biosynthesis of molybdopterin K03638 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464 2.7.7.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002714 279.0
DYD3_k127_6406600_15 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002687 289.0
DYD3_k127_6406600_16 Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length K01716 - 4.2.1.59,5.3.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009751 268.0
DYD3_k127_6406600_17 COG1592 Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000293 258.0
DYD3_k127_6406600_18 Acyl-CoA dehydrogenase, C-terminal domain K22027 - 1.14.13.235 0.0000000000000000000000000000000000000000000000000000000000000000000000000009938 271.0
DYD3_k127_6406600_19 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005547 254.0
DYD3_k127_6406600_2 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 580.0
DYD3_k127_6406600_20 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase K15238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003274 248.0
DYD3_k127_6406600_21 metal-dependent hydrolase with the TIM-barrel fold K07048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007747 251.0
DYD3_k127_6406600_22 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008411 248.0
DYD3_k127_6406600_23 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002106 246.0
DYD3_k127_6406600_24 phosphotriesterase homology protein K07048 - - 0.000000000000000000000000000000000000000000000000000000000000002583 230.0
DYD3_k127_6406600_25 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000001349 206.0
DYD3_k127_6406600_26 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000005717 188.0
DYD3_k127_6406600_27 Belongs to the Fur family K09826 - - 0.00000000000000000000000000000000000000000000001343 174.0
DYD3_k127_6406600_28 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.0000000000000000000000000000000000000000000002446 177.0
DYD3_k127_6406600_29 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000007095 132.0
DYD3_k127_6406600_3 Belongs to the beta-ketoacyl-ACP synthases family K00647 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 581.0
DYD3_k127_6406600_30 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.00000000000000000000000004456 112.0
DYD3_k127_6406600_31 Excinuclease ABC, C subunit K07461 - - 0.0000000000000000000000001448 109.0
DYD3_k127_6406600_32 Domain of unknown function (DUF4282) - - - 0.00000000000000004867 83.0
DYD3_k127_6406600_33 ubiE/COQ5 methyltransferase family - - - 0.00000000000172 68.0
DYD3_k127_6406600_34 Sulfate permease family K03321 - - 0.0004135 46.0
DYD3_k127_6406600_35 - - - - 0.0006317 43.0
DYD3_k127_6406600_4 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 594.0
DYD3_k127_6406600_5 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 475.0
DYD3_k127_6406600_6 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 458.0
DYD3_k127_6406600_7 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 450.0
DYD3_k127_6406600_8 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 420.0
DYD3_k127_6406600_9 Enoyl-(Acyl carrier protein) reductase K00208 GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 379.0
DYD3_k127_6493628_0 Zinc-uptake complex component A periplasmic K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 345.0
DYD3_k127_6493628_1 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000441 331.0
DYD3_k127_6493628_2 phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004256 247.0
DYD3_k127_6493628_3 ABC 3 transport family K02075 - - 0.0000000000000000000000000000000000000000000000004582 186.0
DYD3_k127_6493628_4 Amidohydrolase family - - - 0.0000000000000000000000000000001507 139.0
DYD3_k127_6493628_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000001016 66.0
DYD3_k127_6493628_6 Evidence 4 Homologs of previously reported genes of - - - 0.0001133 44.0
DYD3_k127_6535698_0 Aminotransferase class-III K16871 - 2.6.1.96 3.339e-207 653.0
DYD3_k127_6535698_1 PFAM Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007048 272.0
DYD3_k127_6535698_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001099 275.0
DYD3_k127_6535698_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001567 274.0
DYD3_k127_6535698_4 involved in sulfation activity towards typical ceramide glycolipids and trehalose glycolipids K01014 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006790,GO:0008146,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016782,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0046505,GO:0046506,GO:0071704,GO:1901576 2.8.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000003861 254.0
DYD3_k127_6535698_5 involved in sulfation activity towards typical ceramide glycolipids and trehalose glycolipids K01014 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006790,GO:0008146,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016782,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0046505,GO:0046506,GO:0071704,GO:1901576 2.8.2.1 0.00000000000000000000000000000000000000000000000000000000000000000009943 244.0
DYD3_k127_6535698_6 - - - - 0.000000000000000000000000002716 113.0
DYD3_k127_6541307_0 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 389.0
DYD3_k127_6541307_1 KR domain K00059,K18337 - 1.1.1.100,1.1.1.173,1.1.1.377,1.1.1.378 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 352.0
DYD3_k127_6541307_2 COG2202 FOG PAS PAC domain - - - 0.000000000000000000000000000000000000000000001041 171.0
DYD3_k127_6541307_3 alginic acid biosynthetic process - - - 0.00000000000001606 81.0
DYD3_k127_658272_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006526 543.0
DYD3_k127_658272_1 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 507.0
DYD3_k127_658272_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 438.0
DYD3_k127_658272_3 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000001917 171.0
DYD3_k127_658272_4 ETC complex I subunit - - - 0.00000000000000000000000000000000001286 137.0
DYD3_k127_658272_5 Domain of unknown function (DUF4214) - - - 0.000000000000000000000000000000003239 144.0
DYD3_k127_658272_6 Limonene-1,2-epoxide hydrolase catalytic domain - - - 0.00000000000000000000000000000007476 129.0
DYD3_k127_658272_7 Domain of unknown function (DUF4214) - - - 0.000000000000000000000000005548 125.0
DYD3_k127_658272_8 COG2931 RTX toxins and related Ca2 -binding proteins K01406 - 3.4.24.40 0.00000000001182 77.0
DYD3_k127_6640760_0 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1564.0
DYD3_k127_6640760_1 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 479.0
DYD3_k127_6645656_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.728e-278 862.0
DYD3_k127_6645656_1 Oligoendopeptidase F K08602 - - 2.384e-249 782.0
DYD3_k127_6645656_10 Voltage-dependent anion channel K03304 - - 0.00000000000000000000000000000000000000000000000002661 191.0
DYD3_k127_6645656_11 Protein of unknown function (DUF1244) K09948 - - 0.00000000000000000000000000000000000000000003727 162.0
DYD3_k127_6645656_12 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.000000000000000000000000000000000000000004738 155.0
DYD3_k127_6645656_13 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000001593 156.0
DYD3_k127_6645656_15 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.000000000000000000000000004501 111.0
DYD3_k127_6645656_16 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000001805 104.0
DYD3_k127_6645656_17 phosphohistidine phosphatase, SixA K08296 - - 0.0000000000003103 76.0
DYD3_k127_6645656_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 6.882e-237 753.0
DYD3_k127_6645656_3 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 4.09e-235 737.0
DYD3_k127_6645656_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 599.0
DYD3_k127_6645656_5 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 432.0
DYD3_k127_6645656_6 PFAM N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 295.0
DYD3_k127_6645656_7 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006779 272.0
DYD3_k127_6645656_8 dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001439 254.0
DYD3_k127_6645656_9 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000000000003412 205.0
DYD3_k127_6650963_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006084 505.0
DYD3_k127_6650963_1 PFAM phospholipase Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 387.0
DYD3_k127_6650963_2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 335.0
DYD3_k127_6650963_3 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.000000000000000000000000000000000000000000000000000001424 192.0
DYD3_k127_6650963_4 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.0000000000000000000000000000000000000000000007474 171.0
DYD3_k127_6650963_5 Protein of unknown function (DUF3309) - - - 0.000000000000000000009335 94.0
DYD3_k127_6670366_0 Luciferase-like monooxygenase - - - 7.11e-227 707.0
DYD3_k127_6670366_1 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 351.0
DYD3_k127_6670366_2 Thioesterase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000288 225.0
DYD3_k127_6670366_3 YjbR - - - 0.00000000000000000000000000000000000000000000000000000001822 198.0
DYD3_k127_6689852_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000798 491.0
DYD3_k127_6689852_1 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000000000000009672 221.0
DYD3_k127_6689852_2 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000000000000000000000000001151 218.0
DYD3_k127_6689852_3 Fic/DOC family K07341 - - 0.000000000000000000000000000000000000000008061 157.0
DYD3_k127_6689852_4 PFAM SpoVT AbrB - - - 0.0000000000000000000000000000001539 124.0
DYD3_k127_6689852_6 MreB/Mbl protein K04043 - - 0.00000000000000000001024 94.0
DYD3_k127_6689852_7 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000001908 70.0
DYD3_k127_6700867_0 Methionine synthase K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0 1283.0
DYD3_k127_6700867_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 2.148e-268 835.0
DYD3_k127_6700867_10 MlaA lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000001097 218.0
DYD3_k127_6700867_11 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000001592 178.0
DYD3_k127_6700867_12 signal transduction histidine kinase K07716 - 2.7.13.3 0.00000000000000000000000000000000000001568 148.0
DYD3_k127_6700867_13 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000001811 144.0
DYD3_k127_6700867_2 Vitamin B12 dependent methionine synthase activation K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 487.0
DYD3_k127_6700867_3 reductase K00297 GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 400.0
DYD3_k127_6700867_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 346.0
DYD3_k127_6700867_5 EamA-like transporter family K15268 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 313.0
DYD3_k127_6700867_6 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007258 293.0
DYD3_k127_6700867_7 Tellurite resistance protein TerB K05801 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 289.0
DYD3_k127_6700867_8 Hexapeptide repeat of succinyl-transferase K00661 - 2.3.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000002381 269.0
DYD3_k127_6700867_9 COG3023 Negative regulator of beta-lactamase expression K01447 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000002204 254.0
DYD3_k127_6716614_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00836 - 2.6.1.76 5.814e-201 633.0
DYD3_k127_6716614_1 Catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 600.0
DYD3_k127_6716614_2 Multidrug DMT transporter permease K10674 - 1.14.11.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009205 465.0
DYD3_k127_6716614_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001944 246.0
DYD3_k127_6716614_4 Catalyzes the circularization of gamma-N-acetyl- alpha,gamma-diaminobutyric acid (ADABA) to ectoine (1,4,5,6- tetrahydro-2-methyl-4-pyrimidine carboxylic acid), which is an excellent osmoprotectant - - - 0.0000000000000000000000000000000000000000000000000003629 186.0
DYD3_k127_6716614_5 Acetyltransferase (GNAT) domain K06718 - 2.3.1.178 0.0000957 46.0
DYD3_k127_6718523_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 5.279e-237 743.0
DYD3_k127_6718523_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 387.0
DYD3_k127_6718523_2 Membrane transport protein K07088 - - 0.00000000000000000005725 92.0
DYD3_k127_6741593_0 ABC transporter C-terminal domain K15738 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363 - 3.856e-242 761.0
DYD3_k127_6741593_1 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 486.0
DYD3_k127_6741593_10 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000003883 226.0
DYD3_k127_6741593_11 3-demethylubiquinone-9 3-O-methyltransferase activity K15257 - - 0.00000000000000000000000000000000000000000000000000001833 199.0
DYD3_k127_6741593_12 rpsU-divergently transcribed protein K18587 - - 0.0000000000000000000000000000000000000000000000000007209 191.0
DYD3_k127_6741593_13 MviN-like protein K03980 - - 0.00000000000000000000000000000000000000000000000005318 195.0
DYD3_k127_6741593_14 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000001213 170.0
DYD3_k127_6741593_15 Phospholipid N-methyltransferase K00570 - 2.1.1.17,2.1.1.71 0.0000000000000000000000000000000000000002499 158.0
DYD3_k127_6741593_16 small protein containing a coiled-coil domain - - - 0.0000000000001006 72.0
DYD3_k127_6741593_17 Protein of unknown function (DUF465) - - - 0.00000008617 57.0
DYD3_k127_6741593_2 Anthranilate synthase component I, N terminal region K01657,K01665 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008504 461.0
DYD3_k127_6741593_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 346.0
DYD3_k127_6741593_4 PFAM Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 319.0
DYD3_k127_6741593_5 Creatininase K01470 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 314.0
DYD3_k127_6741593_6 TIGRFAM glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase K01658,K01664,K13497 - 2.4.2.18,2.6.1.85,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000001454 264.0
DYD3_k127_6741593_7 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000002354 263.0
DYD3_k127_6741593_8 general secretion pathway protein D K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000312 256.0
DYD3_k127_6741593_9 Aminotransferase K00826,K02619 - 2.6.1.42,4.1.3.38 0.000000000000000000000000000000000000000000000000000000000000001986 228.0
DYD3_k127_677451_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.528e-221 697.0
DYD3_k127_677451_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 4.762e-218 687.0
DYD3_k127_677451_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 543.0
DYD3_k127_677451_3 Belongs to the phosphoglycerate kinase family K00927 GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009167 533.0
DYD3_k127_677451_4 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 478.0
DYD3_k127_677451_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 285.0
DYD3_k127_677451_6 PAS fold K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000007216 265.0
DYD3_k127_677451_7 - - - - 0.000000000000000000000000884 108.0
DYD3_k127_677451_8 Peptidase family M48 - - - 0.000000000000000006448 89.0
DYD3_k127_677451_9 - - - - 0.00000000000002978 73.0
DYD3_k127_6832111_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0 1216.0
DYD3_k127_6832111_1 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006566 323.0
DYD3_k127_6832111_2 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008262 290.0
DYD3_k127_6832111_3 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000004569 251.0
DYD3_k127_6832111_4 carbon monoxide dehydrogenase K09386 - - 0.000000000000000000000000000000000000000000000000000000004023 204.0
DYD3_k127_6832111_5 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000002476 153.0
DYD3_k127_6834350_0 acyl-CoA transferases carnitine dehydratase K18702 - 2.8.3.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 513.0
DYD3_k127_6834350_1 protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000006042 180.0
DYD3_k127_6834350_2 Disulphide bond corrector protein DsbC K04084 - 1.8.1.8 0.000000008589 59.0
DYD3_k127_6834350_3 Domain of unknown function (DUF4169) - - - 0.00001817 49.0
DYD3_k127_6854703_0 Protein of unknown function (DUF1329) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 479.0
DYD3_k127_6854703_1 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005281 296.0
DYD3_k127_6854703_2 protein containing LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000000003897 224.0
DYD3_k127_6854703_3 Belongs to the LOG family K06966 - 3.2.2.10 0.00002083 47.0
DYD3_k127_6913277_0 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179,K06125 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 374.0
DYD3_k127_6913277_1 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 363.0
DYD3_k127_6913277_2 glutamate--cysteine ligase K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000000000006979 199.0
DYD3_k127_6913277_3 Ribosomal protein L11 methyltransferase (PrmA) - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010565,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031974,GO:0031998,GO:0031999,GO:0032259,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043467,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045833,GO:0045922,GO:0046320,GO:0046322,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050994,GO:0050995,GO:0051341,GO:0051354,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1904732,GO:1904733,GO:1904735,GO:1904736 - 0.00000004477 57.0
DYD3_k127_6950743_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 1.527e-258 816.0
DYD3_k127_6950743_1 transcriptional regulator - - - 0.0000000000000000000000000000001431 130.0
DYD3_k127_6950743_2 - - - - 0.00000000000000000000001457 102.0
DYD3_k127_6955696_0 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000000000000002211 177.0
DYD3_k127_6955696_1 Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000133 169.0
DYD3_k127_6955696_2 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000004532 167.0
DYD3_k127_6955696_3 arsenate reductase K00537 - 1.20.4.1 0.000000000000000000000000000000000000000000876 159.0
DYD3_k127_6957160_0 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 1.063e-213 666.0
DYD3_k127_6957160_1 Arginyl tRNA synthetase N terminal domain K01887 - 6.1.1.19 5.305e-197 627.0
DYD3_k127_6957160_2 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 398.0
DYD3_k127_6957160_3 chemotaxis MotB protein K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 300.0
DYD3_k127_6957160_4 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000002647 207.0
DYD3_k127_6957160_5 Flavin reductase like domain - - - 0.00000000000000000000000000000000000000000000000008556 181.0
DYD3_k127_6957160_6 FAD dependent oxidoreductase K09471 - - 0.0000000000000000000000000000000000000000000199 164.0
DYD3_k127_6957160_7 - - - - 0.0000000000000000000000000000000000000001962 161.0
DYD3_k127_6957160_8 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000000000000000000001074 133.0
DYD3_k127_6957160_9 ExbD TolR K03559 - - 0.000000000000000001748 92.0
DYD3_k127_6958805_0 Sodium:sulfate symporter transmembrane region - - - 2.406e-238 751.0
DYD3_k127_6958805_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 1.953e-205 649.0
DYD3_k127_6958805_2 Mechanosensitive Ion channel K16053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 473.0
DYD3_k127_6958805_3 COG3264 Small-conductance mechanosensitive channel K05802 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 462.0
DYD3_k127_6990917_0 Uncharacterized protein family (UPF0051) K09014 - - 2.769e-265 822.0
DYD3_k127_6990917_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.093e-253 814.0
DYD3_k127_6990917_10 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 310.0
DYD3_k127_6990917_11 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005418 277.0
DYD3_k127_6990917_12 Enoyl-CoA hydratase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000006858 263.0
DYD3_k127_6990917_13 Eukaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001231 267.0
DYD3_k127_6990917_14 COG2199 FOG GGDEF domain K13590 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000001095 264.0
DYD3_k127_6990917_15 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000000000001864 222.0
DYD3_k127_6990917_16 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000008612 218.0
DYD3_k127_6990917_17 transcriptional regulator K13643 - - 0.000000000000000000000000000000000000000000000000000000003577 203.0
DYD3_k127_6990917_18 YceI-like domain - - - 0.0000000000000000000000000000000000000000000000000007443 190.0
DYD3_k127_6990917_19 Iron-sulphur cluster biosynthesis K13628 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0031163,GO:0031974,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000002741 164.0
DYD3_k127_6990917_2 belongs to the aldehyde dehydrogenase family K00154,K22445 - 1.2.1.68,1.2.99.10 3.455e-209 661.0
DYD3_k127_6990917_20 Iron-sulfur cluster assembly protein - - - 0.0000000000000000000000000000000000000000008471 162.0
DYD3_k127_6990917_21 regulator of competence-specific genes K07343 - - 0.000000000000000000000005308 105.0
DYD3_k127_6990917_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 577.0
DYD3_k127_6990917_4 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 560.0
DYD3_k127_6990917_5 Protein of unknown function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007805 456.0
DYD3_k127_6990917_6 Protein of unknown function (DUF1329) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 381.0
DYD3_k127_6990917_7 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 374.0
DYD3_k127_6990917_8 TIGRFAM FeS assembly ATPase SufC K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 354.0
DYD3_k127_6990917_9 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 357.0
DYD3_k127_6992855_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 2.386e-318 981.0
DYD3_k127_6992855_1 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006622 504.0
DYD3_k127_6992855_2 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001146 284.0
DYD3_k127_6992855_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000504 247.0
DYD3_k127_6992855_4 Histidine kinase - - - 0.000000000000000000000000000000000000001341 168.0
DYD3_k127_6992855_5 Ribosomal protein L31 K02909 - - 0.0000000000000000000000000000001882 126.0
DYD3_k127_6992855_6 BetI-type transcriptional repressor, C-terminal - - - 0.0000000000000000000000005575 112.0
DYD3_k127_6992855_7 MEKHLA domain - - - 0.000000001256 71.0
DYD3_k127_7021092_0 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 299.0
DYD3_k127_7021092_1 Cation transport protein K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 297.0
DYD3_k127_7021092_2 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006807,GO:0008150,GO:0008152,GO:0009399,GO:0071941,GO:0097159,GO:1901363 - 0.000000000000000000000000000000000000004365 147.0
DYD3_k127_7021092_3 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018193,GO:0018209,GO:0019001,GO:0019222,GO:0019538,GO:0019843,GO:0022411,GO:0030554,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036211,GO:0036289,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:2000112 - 0.0000000004458 63.0
DYD3_k127_7021092_4 TrkA-C domain K03499 - - 0.000000003929 57.0
DYD3_k127_7027949_0 Epoxide hydrolase N terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 522.0
DYD3_k127_7027949_1 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000007615 225.0
DYD3_k127_7027949_2 Autoinducer K18096 - 2.3.1.228,2.3.1.229 0.000000000000000000000000000000000000002386 154.0
DYD3_k127_7027949_3 COG2771 DNA-binding HTH domain-containing proteins - - - 0.0000000000000000000000000000000000005469 149.0
DYD3_k127_7027949_4 PFAM Luciferase-like monooxygenase - - - 0.0005231 44.0
DYD3_k127_7028321_0 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008939 478.0
DYD3_k127_7028321_1 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 463.0
DYD3_k127_7028321_2 Lipopolysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008434 280.0
DYD3_k127_7028321_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002131 269.0
DYD3_k127_7028321_4 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000001042 253.0
DYD3_k127_7028321_5 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000005422 221.0
DYD3_k127_7028321_6 Transcriptional regulator - - - 0.000000000001354 76.0
DYD3_k127_7028321_7 Acetyltransferase (GNAT) domain - - - 0.0000003775 54.0
DYD3_k127_7035751_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1392.0
DYD3_k127_7035751_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 6.654e-285 891.0
DYD3_k127_7035751_10 - - - - 0.00001885 53.0
DYD3_k127_7035751_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K02858,K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003422 544.0
DYD3_k127_7035751_3 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 316.0
DYD3_k127_7035751_4 Protein of unknown function (DUF3089) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 305.0
DYD3_k127_7035751_5 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003187 254.0
DYD3_k127_7035751_6 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000008342 192.0
DYD3_k127_7035751_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000000000000006414 165.0
DYD3_k127_7035751_8 Riboflavin synthase alpha chain K00793 - 2.5.1.9 0.000000000000000000000000008084 111.0
DYD3_k127_7035751_9 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000000005125 102.0
DYD3_k127_7064026_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004705 576.0
DYD3_k127_7064026_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000922 503.0
DYD3_k127_7064026_10 TadE-like protein - - - 0.00000000000006881 78.0
DYD3_k127_7064026_11 Putative Flp pilus-assembly TadE/G-like - - - 0.0000002232 55.0
DYD3_k127_7064026_2 acyl-CoA transferases carnitine dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 503.0
DYD3_k127_7064026_3 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007683 439.0
DYD3_k127_7064026_4 Acyl-CoA dehydrogenase, C-terminal domain K16047 - 1.14.14.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 360.0
DYD3_k127_7064026_5 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 349.0
DYD3_k127_7064026_6 Enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004534 291.0
DYD3_k127_7064026_7 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000004066 226.0
DYD3_k127_7064026_9 Belongs to the ClpA ClpB family K03694 - - 0.0000000000000000000174 90.0
DYD3_k127_7074599_0 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000813 244.0
DYD3_k127_7074599_1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000009318 198.0
DYD3_k127_7074599_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000000000004543 175.0
DYD3_k127_7074599_3 chemotaxis protein K03414 - - 0.0000000000000000000000000000000000000004234 160.0
DYD3_k127_7074599_5 protein conserved in bacteria - - - 0.0000000000000000000000000000000000579 138.0
DYD3_k127_7074599_6 helicase superfamily c-terminal domain K17675 - 3.6.4.13 0.0000000000000000000000000000207 130.0
DYD3_k127_7074599_7 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.0000000000000000000001419 102.0
DYD3_k127_7074599_8 Enoyl-CoA hydratase/isomerase - - - 0.000000000005709 66.0
DYD3_k127_7081758_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.0 1272.0
DYD3_k127_7081758_1 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 9.904e-216 687.0
DYD3_k127_7081758_10 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001479 272.0
DYD3_k127_7081758_11 related to short-chain alcohol dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000154 267.0
DYD3_k127_7081758_12 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001793 264.0
DYD3_k127_7081758_13 related to short-chain alcohol dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002254 261.0
DYD3_k127_7081758_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 542.0
DYD3_k127_7081758_3 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 534.0
DYD3_k127_7081758_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 483.0
DYD3_k127_7081758_5 Belongs to the ABC transporter superfamily K02031,K02032,K10823,K13896,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 434.0
DYD3_k127_7081758_6 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 316.0
DYD3_k127_7081758_7 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001208 282.0
DYD3_k127_7081758_8 CDP-alcohol phosphatidyltransferase 2 K17103 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001655 282.0
DYD3_k127_7081758_9 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001031 271.0
DYD3_k127_708915_0 short-chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 346.0
DYD3_k127_708915_1 Sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003787 262.0
DYD3_k127_708915_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000003189 227.0
DYD3_k127_708915_3 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000006121 185.0
DYD3_k127_7118012_0 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006096 271.0
DYD3_k127_7118012_1 metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000005916 226.0
DYD3_k127_7118012_2 NMT1-like family K07080 - - 0.00000000000000000000000000000000000000000000002743 179.0
DYD3_k127_7130609_0 NMT1-like family K15576 - - 1.167e-231 724.0
DYD3_k127_7130609_1 L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006977 509.0
DYD3_k127_7130609_2 ABC-type nitrate sulfonate bicarbonate transport system permease component K15577 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003456 271.0
DYD3_k127_7130609_3 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000009412 194.0
DYD3_k127_7130609_4 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.0000000000000000009033 94.0
DYD3_k127_7130609_5 Methyltransferase - - - 0.0000000000000003125 78.0
DYD3_k127_7130609_6 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.0000000000000004805 82.0
DYD3_k127_7134003_0 Proton-conducting membrane transporter K05568 - - 1.255e-207 659.0
DYD3_k127_7134003_1 Proton-conducting membrane transporter K00341,K05568 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 586.0
DYD3_k127_7134003_10 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000000000005684 151.0
DYD3_k127_7134003_11 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000002505 130.0
DYD3_k127_7134003_12 Na+/H+ ion antiporter subunit K05569 - - 0.000000000000000000000000000001237 126.0
DYD3_k127_7134003_13 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000266 121.0
DYD3_k127_7134003_14 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000009619 112.0
DYD3_k127_7134003_15 monovalent cation proton antiporter, MnhG PhaG subunit K05571 - - 0.000000000000000000000000188 110.0
DYD3_k127_7134003_16 gluconolactonase activity - - - 0.0000000000000000000001779 98.0
DYD3_k127_7134003_2 Proton-conducting membrane transporter K00343,K05568 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 570.0
DYD3_k127_7134003_3 Taurine catabolism dioxygenase TauD, TfdA family K22303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 455.0
DYD3_k127_7134003_4 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 443.0
DYD3_k127_7134003_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 - 0.0000000000000000000000000000000000000000000000000000000000000000000001467 241.0
DYD3_k127_7134003_6 Domain of unknown function (DUF4040) K05566 - - 0.0000000000000000000000000000000000000000000000000000000000003411 216.0
DYD3_k127_7134003_7 Cold shock protein domain K03704 - - 0.0000000000000000000000000000000000000000000000000000005376 203.0
DYD3_k127_7134003_8 Domain related to MnhB subunit of Na+/H+ antiporter K05566 - - 0.00000000000000000000000000000000000000000000000003192 182.0
DYD3_k127_7134003_9 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K05567 - - 0.00000000000000000000000000000000000000000000005156 171.0
DYD3_k127_7150876_0 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 8.74e-213 672.0
DYD3_k127_7150876_1 Aminotransferase class I and II K00652 - 2.3.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000266 527.0
DYD3_k127_7150876_2 Aminotransferase class-III K00822,K00833 - 2.6.1.18,2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003472 428.0
DYD3_k127_7150876_3 HAD-hyrolase-like K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000001595 234.0
DYD3_k127_7150876_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935,K02169 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.197,6.3.3.3 0.00000000000000000000000000000000000000000000000000000001656 204.0
DYD3_k127_7150876_5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase - - - 0.00000009259 56.0
DYD3_k127_721265_0 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008947 301.0
DYD3_k127_721265_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002141 267.0
DYD3_k127_721265_2 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000001197 255.0
DYD3_k127_739952_0 Formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0 1578.0
DYD3_k127_739952_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit K00122,K00124,K00335 - 1.17.1.9,1.6.5.3 3.02e-238 745.0
DYD3_k127_739952_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 370.0
DYD3_k127_739952_3 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006424 252.0
DYD3_k127_739952_4 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K00797,K01611 - 2.5.1.16,4.1.1.50 0.0000000000000000000000000000000000000000000000000000000009081 206.0
DYD3_k127_739952_5 NADH-dependant formate dehydrogenase delta subunit FdsD K00126 - 1.17.1.9 0.0000000000000001978 81.0
DYD3_k127_76019_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1778.0
DYD3_k127_76019_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 316.0
DYD3_k127_76019_2 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000008812 238.0
DYD3_k127_76019_3 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000135 143.0
DYD3_k127_76019_4 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0000000000000000000000000000002062 126.0
DYD3_k127_76019_5 Nodulation protein S (NodS) - - - 0.00000000000000000000002615 108.0
DYD3_k127_76019_6 PFAM Glycosyl transferase family 2 - - - 0.0000000002899 61.0
DYD3_k127_76019_7 PFAM Glycosyl transferase family 2 - - - 0.000000005398 60.0
DYD3_k127_76019_8 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000003608 60.0
DYD3_k127_766974_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007263 544.0
DYD3_k127_766974_1 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007455 417.0
DYD3_k127_766974_2 Predicted membrane protein (DUF2177) - - - 0.00000000000000000000000000000000000000001983 156.0
DYD3_k127_766974_3 ribonuclease BN K07058 - - 0.00000000000000000000000007349 109.0
DYD3_k127_774653_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 1.208e-259 813.0
DYD3_k127_774653_1 CDP-alcohol phosphatidyltransferase K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000000000000000000000000000000000000000000000000001813 237.0
DYD3_k127_774653_2 COG0314 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.0000000000000000000000000000000000000000000000000000000001064 207.0
DYD3_k127_774653_3 Flavin-binding monooxygenase-like K03379 - 1.14.13.22 0.000000000000000000000000000000000000000000000003584 175.0
DYD3_k127_774653_4 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000000000000000146 119.0
DYD3_k127_774653_5 Domain of unknown function (DUF4214) - - - 0.000000000000000000000000005944 129.0
DYD3_k127_774653_6 helix_turn_helix, Lux Regulon - - - 0.000000231 63.0
DYD3_k127_79408_0 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 1.253e-280 894.0
DYD3_k127_79408_1 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 1.195e-195 635.0
DYD3_k127_79408_2 COG4206 Outer membrane cobalamin receptor protein K16092 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0006810,GO:0006811,GO:0008150,GO:0015075,GO:0015267,GO:0015318,GO:0015889,GO:0015893,GO:0016020,GO:0016021,GO:0019904,GO:0022803,GO:0022838,GO:0022857,GO:0031224,GO:0034220,GO:0042221,GO:0042493,GO:0044425,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051234,GO:0055085,GO:0071702,GO:0071705 - 2.582e-195 620.0
DYD3_k127_79408_3 Nucleotidyl transferase K00966,K00992 - 2.7.7.13,2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000001164 255.0
DYD3_k127_79408_4 - - - - 0.0000000000000000000000000000000000000000000006124 173.0
DYD3_k127_814887_0 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 475.0
DYD3_k127_814887_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 441.0
DYD3_k127_814887_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007173 329.0
DYD3_k127_814887_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 287.0
DYD3_k127_846128_0 LUD domain K18929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 612.0
DYD3_k127_846128_1 membrane-bound lytic murein transglycosylase K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 412.0
DYD3_k127_846128_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 324.0
DYD3_k127_846128_3 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 288.0
DYD3_k127_846128_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002179 271.0
DYD3_k127_846128_5 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000008781 242.0
DYD3_k127_846128_6 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.0000000000000000000000000000000000000000000000000006868 188.0
DYD3_k127_846128_7 LUD domain K00782 - - 0.00000000000000000000000000000000000000000000000004016 190.0
DYD3_k127_846128_8 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000022 182.0
DYD3_k127_846128_9 protein conserved in bacteria - - - 0.00000000000000000000000002607 117.0
DYD3_k127_8569_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.699e-308 955.0
DYD3_k127_8569_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 553.0
DYD3_k127_8569_10 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.000000000000000000001602 96.0
DYD3_k127_8569_2 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 410.0
DYD3_k127_8569_3 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 380.0
DYD3_k127_8569_4 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 372.0
DYD3_k127_8569_5 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 330.0
DYD3_k127_8569_6 Phosphoribosyl transferase domain K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000001911 262.0
DYD3_k127_8569_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557,K03215 - 2.1.1.190,2.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000006906 247.0
DYD3_k127_8569_8 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000000000000000006883 238.0
DYD3_k127_8569_9 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K19647 - 1.1.1.291,1.1.1.31 0.00000000000000000000000000000000000000000000000001004 190.0
DYD3_k127_940874_0 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 289.0
DYD3_k127_940874_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009332 286.0
DYD3_k127_940874_2 [2Fe-2S] binding domain - - - 0.000000000000000000000000000000000000000000000000000000002178 203.0
DYD3_k127_940874_3 SBF-like CPA transporter family (DUF4137) K03453 - - 0.000000000000000000000000000000000000000000000004823 183.0
DYD3_k127_940874_4 involved in sulfation activity towards typical ceramide glycolipids and trehalose glycolipids K01014 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006790,GO:0008146,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016782,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0046505,GO:0046506,GO:0071704,GO:1901576 2.8.2.1 0.000000000000000000000001245 107.0
DYD3_k127_942979_0 ABC transporter K15578 - - 3.753e-265 826.0
DYD3_k127_942979_1 Major Facilitator Superfamily K02575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005466 597.0
DYD3_k127_942979_2 NMT1-like family K15576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 458.0
DYD3_k127_942979_3 PFAM Binding-protein-dependent transport systems inner membrane component K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 419.0
DYD3_k127_942979_4 Serine/threonine phosphatases, family 2C, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 314.0
DYD3_k127_942979_5 Alginate export - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 306.0
DYD3_k127_959228_0 UMP catabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000000004615 231.0
DYD3_k127_959228_1 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000001412 195.0
DYD3_k127_959228_2 Domain of unknown function (DUF1849) - - - 0.00000000000000000000000000000000000000001922 166.0
DYD3_k127_959228_3 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 0.0000000000000000000000003291 106.0
DYD3_k127_959228_4 Protein of unknown function (DUF3572) - - - 0.0000000000002312 73.0
DYD3_k127_964638_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.355e-227 711.0
DYD3_k127_964638_1 Aminotransferase class I and II K14155 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004452 328.0
DYD3_k127_964638_2 Limonene-1,2-epoxide hydrolase K10533 - 3.3.2.8 0.000000000000000000000000000000000000000000000000000004785 192.0
DYD3_k127_964638_3 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000001724 144.0
DYD3_k127_964638_4 response to cobalt ion - - - 0.0000000000000000000001216 104.0
DYD3_k127_964638_5 Belongs to the UPF0758 family K03630 - - 0.0000000000000000004063 94.0
DYD3_k127_967393_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 499.0
DYD3_k127_967393_1 Zinc-uptake complex component A periplasmic K09815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002451 268.0
DYD3_k127_967393_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000001676 188.0
DYD3_k127_967393_3 COG2518 Protein-L-isoaspartate carboxylmethyltransferase K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000003401 174.0
DYD3_k127_967393_4 transferase activity, transferring glycosyl groups - - - 0.000004436 49.0
DYD3_k127_969531_0 Carboxyl transferase domain K01969 - 6.4.1.4 1.554e-279 865.0
DYD3_k127_969531_1 Biotin carboxylase C-terminal domain K01965,K01968,K13777 - 6.4.1.3,6.4.1.4,6.4.1.5 1.906e-243 769.0
DYD3_k127_969531_10 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000826 369.0
DYD3_k127_969531_11 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 323.0
DYD3_k127_969531_12 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 291.0
DYD3_k127_969531_13 enoyl-CoA hydratase K13766,K13779 - 4.2.1.18,4.2.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007707 271.0
DYD3_k127_969531_14 methionine biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001111 261.0
DYD3_k127_969531_15 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005789 250.0
DYD3_k127_969531_16 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000001285 228.0
DYD3_k127_969531_17 CoA binding domain K06929 - - 0.000000000000000000000000000000000000000000000000000000000175 207.0
DYD3_k127_969531_18 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000008797 212.0
DYD3_k127_969531_19 Glutathione S-transferase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000001389 186.0
DYD3_k127_969531_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 9.667e-211 661.0
DYD3_k127_969531_20 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000003172 192.0
DYD3_k127_969531_21 Protein of unknown function (DUF1489) - - - 0.000000000000000000000000000000000000000000009647 166.0
DYD3_k127_969531_22 Glutaredoxin K07390 - - 0.0000000000000000000000000000000000000000009609 159.0
DYD3_k127_969531_23 Domain of unknown function (DUF1476) - - - 0.00000000000000000000000000000000000002145 146.0
DYD3_k127_969531_24 BolA-like protein - - - 0.000000000000000000000000000000009811 128.0
DYD3_k127_969531_25 acetyltransferase K09707 - - 0.0000000000000000000000000000002426 130.0
DYD3_k127_969531_26 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000005738 123.0
DYD3_k127_969531_27 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000005592 73.0
DYD3_k127_969531_3 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 607.0
DYD3_k127_969531_4 Cys/Met metabolism PLP-dependent enzyme K01738,K01740 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47,2.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 598.0
DYD3_k127_969531_5 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 519.0
DYD3_k127_969531_6 Membrane bound O-acyl transferase MBOAT family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 438.0
DYD3_k127_969531_7 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 410.0
DYD3_k127_969531_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 397.0
DYD3_k127_969531_9 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 371.0
DYD3_k127_975109_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.275e-245 766.0
DYD3_k127_975109_1 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 419.0
DYD3_k127_975109_2 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 372.0
DYD3_k127_975109_3 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 344.0
DYD3_k127_975109_4 Peptidoglycan-binding domain 1 protein K08305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 319.0
DYD3_k127_975109_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000789 262.0
DYD3_k127_975109_6 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000007323 242.0
DYD3_k127_975109_7 Beta-lactamase superfamily domain K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000007285 211.0
DYD3_k127_975109_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000006722 131.0
DYD3_k127_989419_0 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003353 274.0
DYD3_k127_989419_1 AMP-binding enzyme K00666 - - 0.000000000000000000000000000000000000000000000000000000000000004799 221.0
DYD3_k127_989419_2 Cys/Met metabolism PLP-dependent enzyme K00652,K00654 - 2.3.1.47,2.3.1.50 0.00000000000000000000000000000000005323 137.0
DYD3_k127_989419_3 Phosphopantetheine attachment site - - - 0.000000000000005155 78.0
DYD3_k127_991584_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 5.933e-202 635.0
DYD3_k127_991584_1 S4 RNA-binding domain K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 329.0
DYD3_k127_991584_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004606 291.0
DYD3_k127_991584_3 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.000000000000000000000000000000000000000000000000000000000002531 212.0
DYD3_k127_991584_4 Fic/DOC family - - - 0.00000000000000000000000000000000000000000000000000000000005007 211.0
DYD3_k127_991584_5 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000009025 194.0
DYD3_k127_991584_6 LysE type translocator - GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0042968,GO:0042970,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000003599 101.0
DYD3_k127_991584_7 - - - - 0.00000005841 56.0