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Overview

ID MAG00952
Name DYD3_bin.21
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order Kiloniellales
Family J153
Genus
Species
Assembly information
Completeness (%) 89.19
Contamination (%) 1.44
GC content (%) 64.0
N50 (bp) 25,518
Genome size (bp) 4,385,751

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes4076

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1045941_0 Tripartite tricarboxylate transporter TctA family - - - 4.156e-217 683.0
DYD3_k127_1045941_1 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000000000000000003537 160.0
DYD3_k127_1045941_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000342 71.0
DYD3_k127_1052042_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 2.408e-230 727.0
DYD3_k127_1052042_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 6.221e-194 617.0
DYD3_k127_1052042_10 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.000000000000000000000000000000000000000000000000000176 193.0
DYD3_k127_1052042_11 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000000000000000000001273 126.0
DYD3_k127_1052042_12 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000007344 101.0
DYD3_k127_1052042_13 - - - - 0.0000000000000005611 86.0
DYD3_k127_1052042_14 Ribosomal protein L34 K02914 - - 0.000000000000003447 76.0
DYD3_k127_1052042_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 471.0
DYD3_k127_1052042_3 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 481.0
DYD3_k127_1052042_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 451.0
DYD3_k127_1052042_5 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 345.0
DYD3_k127_1052042_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007259 316.0
DYD3_k127_1052042_7 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001001 282.0
DYD3_k127_1052042_8 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008693 256.0
DYD3_k127_1052042_9 Acts on guanine, xanthine and to a lesser extent hypoxanthine K00769 - 2.4.2.22 0.00000000000000000000000000000000000000000000000000000000000000000000289 238.0
DYD3_k127_105490_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 1.83e-263 822.0
DYD3_k127_105490_1 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 497.0
DYD3_k127_105490_2 protein related to plant photosystem II stability assembly factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 466.0
DYD3_k127_105490_3 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 360.0
DYD3_k127_105490_4 Domain of unknown function (DUF2437) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 347.0
DYD3_k127_105490_5 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005691 340.0
DYD3_k127_105490_6 Universal stress protein family - - - 0.00000000000000000000000000000000000000000001342 168.0
DYD3_k127_105490_7 restriction endonuclease K07448 - - 0.0000000000000000000000000003737 114.0
DYD3_k127_105490_8 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.0000000000000000000000006394 106.0
DYD3_k127_105490_9 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000001014 93.0
DYD3_k127_1080155_0 Flavin containing amine oxidoreductase - - - 2.333e-206 652.0
DYD3_k127_1080155_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 605.0
DYD3_k127_1080155_10 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005334 328.0
DYD3_k127_1080155_11 metallopeptidase activity K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 340.0
DYD3_k127_1080155_12 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001217 289.0
DYD3_k127_1080155_13 Polysaccharide pyruvyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009764 282.0
DYD3_k127_1080155_14 dioxygenase activity K05710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000527 272.0
DYD3_k127_1080155_15 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009776 262.0
DYD3_k127_1080155_16 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009542 271.0
DYD3_k127_1080155_17 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000002182 236.0
DYD3_k127_1080155_18 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000002946 222.0
DYD3_k127_1080155_19 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000001257 208.0
DYD3_k127_1080155_2 amine oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 577.0
DYD3_k127_1080155_20 lysyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000002572 219.0
DYD3_k127_1080155_21 - - - - 0.00000000000000000000000000000000000000000000000000001304 196.0
DYD3_k127_1080155_22 Polysaccharide pyruvyl transferase - - - 0.000000000000000000000000000000000000000000000002389 193.0
DYD3_k127_1080155_23 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000001102 142.0
DYD3_k127_1080155_24 polysaccharide deacetylase - - - 0.00000000000000000000000000000009496 136.0
DYD3_k127_1080155_25 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000005871 129.0
DYD3_k127_1080155_26 - - - - 0.0000000000000000000000000005549 131.0
DYD3_k127_1080155_28 glycosyl transferase family - - - 0.000000000000002237 91.0
DYD3_k127_1080155_29 endonuclease exonuclease phosphatase - - - 0.000000000000002445 87.0
DYD3_k127_1080155_3 GDP-mannose 4,6 dehydratase K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008478 516.0
DYD3_k127_1080155_30 Polysaccharide biosynthesis protein - - - 0.0000000000004759 82.0
DYD3_k127_1080155_4 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005823 395.0
DYD3_k127_1080155_5 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006727 363.0
DYD3_k127_1080155_6 Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM) K15256 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 358.0
DYD3_k127_1080155_7 - K14340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004501 359.0
DYD3_k127_1080155_8 COG3264 Small-conductance mechanosensitive channel K05802 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007178 342.0
DYD3_k127_1080155_9 Glycosyltransferase like family 2 K20534 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 327.0
DYD3_k127_1101073_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 1.273e-309 956.0
DYD3_k127_1101073_1 single-stranded-DNA-specific exonuclease recJ K07462 - - 2.322e-219 699.0
DYD3_k127_1101073_10 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 383.0
DYD3_k127_1101073_11 COG2873 O-acetylhomoserine sulfhydrylase K01738,K01740 - 2.5.1.47,2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 354.0
DYD3_k127_1101073_12 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000676 331.0
DYD3_k127_1101073_13 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000292 273.0
DYD3_k127_1101073_14 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003629 274.0
DYD3_k127_1101073_15 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002348 259.0
DYD3_k127_1101073_16 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000005126 250.0
DYD3_k127_1101073_17 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000001001 230.0
DYD3_k127_1101073_18 CoA binding domain K06929 - - 0.000000000000000000000000000000000000000000000000000000000000000007679 228.0
DYD3_k127_1101073_19 UPF0126 domain - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000001178 213.0
DYD3_k127_1101073_2 Aminotransferase K14261 - - 8.207e-208 651.0
DYD3_k127_1101073_20 Aldolase K01625 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 4.1.2.14,4.1.3.42 0.0000000000000000000000000000000000000000000000000000004382 201.0
DYD3_k127_1101073_21 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000000000000001568 192.0
DYD3_k127_1101073_22 OmpA family - - - 0.00000000000000000000000000000000000000001866 166.0
DYD3_k127_1101073_23 Protein of unknown function (DUF1491) - - - 0.00000000000000000000000000000000000001051 147.0
DYD3_k127_1101073_24 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.0000000000000000000000000000000000006445 148.0
DYD3_k127_1101073_3 Phosphoglycerol transferase - - - 7.621e-206 659.0
DYD3_k127_1101073_4 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004499 587.0
DYD3_k127_1101073_5 FAD linked oxidase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 562.0
DYD3_k127_1101073_6 COG1494 Fructose-1,6-bisphosphatase sedoheptulose 1,7-bisphosphatase and related proteins K11532 - 3.1.3.11,3.1.3.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 524.0
DYD3_k127_1101073_7 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 475.0
DYD3_k127_1101073_8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 447.0
DYD3_k127_1101073_9 Bifunctional protein argC, mitochondrial-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004468 400.0
DYD3_k127_1105698_0 formate dehydrogenase K00127 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 327.0
DYD3_k127_1105698_1 nitrate reductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 293.0
DYD3_k127_1105698_2 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000000000000838 187.0
DYD3_k127_1105698_3 4Fe-4S ferredoxin iron-sulfur binding domain protein K21834 - - 0.000000000000000003287 96.0
DYD3_k127_1105698_4 transcriptional regulator, ArsR family - GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044212,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000009465 81.0
DYD3_k127_1108825_0 Belongs to the GcvT family K00302 - 1.5.3.1 0.0 1279.0
DYD3_k127_1108825_1 serine protein kinase K07180 - - 1.166e-273 847.0
DYD3_k127_1108825_2 FAD dependent oxidoreductase K00303 - 1.5.3.1 5.838e-210 659.0
DYD3_k127_1108825_3 Sarcosine oxidase, gamma subunit family K00305 - 1.5.3.1 0.0000000000000000000000000000000000000006992 156.0
DYD3_k127_1108825_4 Sarcosine oxidase, delta subunit family K00304 - 1.5.3.1 0.0000000000000000000000000000000000001872 143.0
DYD3_k127_1203790_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1058.0
DYD3_k127_1203790_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 4.794e-316 990.0
DYD3_k127_1203790_10 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009841 376.0
DYD3_k127_1203790_11 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 372.0
DYD3_k127_1203790_12 COG1253 Hemolysins and related proteins containing CBS domains K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006495 365.0
DYD3_k127_1203790_13 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 357.0
DYD3_k127_1203790_14 xylanase chitin deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 353.0
DYD3_k127_1203790_15 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 327.0
DYD3_k127_1203790_16 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 304.0
DYD3_k127_1203790_17 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 288.0
DYD3_k127_1203790_18 COG0694 Thioredoxin-like proteins and domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000122 285.0
DYD3_k127_1203790_19 Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length K01716 - 4.2.1.59,5.3.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001427 274.0
DYD3_k127_1203790_2 Participates in both transcription termination and antitermination K02600 - - 2.022e-243 761.0
DYD3_k127_1203790_20 NADH dehydrogenase NAD(P)H nitroreductase K09019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004211 275.0
DYD3_k127_1203790_21 COG1592 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005584 264.0
DYD3_k127_1203790_22 catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000009176 269.0
DYD3_k127_1203790_23 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000188 234.0
DYD3_k127_1203790_24 Co Zn Cd efflux system component - - - 0.000000000000000000000000000000000000000000000000000000000000008109 224.0
DYD3_k127_1203790_25 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000008955 218.0
DYD3_k127_1203790_26 ROS/MUCR transcriptional regulator protein - - - 0.000000000000000000000000000000000000000000000000000000000003574 210.0
DYD3_k127_1203790_27 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000001942 205.0
DYD3_k127_1203790_28 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000000000000000000000000000000101 200.0
DYD3_k127_1203790_29 Belongs to the Fur family K09826 - - 0.00000000000000000000000000000000000000000000000000004201 190.0
DYD3_k127_1203790_3 Cysteine-rich domain - - - 5.894e-213 670.0
DYD3_k127_1203790_30 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.0000000000000000000000000000000000000000000000000001899 195.0
DYD3_k127_1203790_31 protein conserved in bacteria K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000001492 184.0
DYD3_k127_1203790_32 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.00000000000000000000000000000000000000000002403 171.0
DYD3_k127_1203790_33 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000000002633 169.0
DYD3_k127_1203790_34 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000000004319 153.0
DYD3_k127_1203790_35 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000000002075 148.0
DYD3_k127_1203790_36 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000005248 114.0
DYD3_k127_1203790_37 FR47-like protein K03789 - 2.3.1.128 0.0000000000000000000133 102.0
DYD3_k127_1203790_4 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 8.944e-208 650.0
DYD3_k127_1203790_5 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 1.829e-206 647.0
DYD3_k127_1203790_6 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 612.0
DYD3_k127_1203790_7 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 555.0
DYD3_k127_1203790_8 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 520.0
DYD3_k127_1203790_9 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004097 445.0
DYD3_k127_1215001_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01584 - 4.1.1.19 0.0 1181.0
DYD3_k127_1215001_1 Fumarase C-terminus K01676 GO:0003674,GO:0003824,GO:0004333,GO:0005488,GO:0005515,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016860,GO:0016862,GO:0016999,GO:0017144,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0048037,GO:0050163,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 1.313e-264 824.0
DYD3_k127_1215001_10 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 441.0
DYD3_k127_1215001_11 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 432.0
DYD3_k127_1215001_12 choloylglycine hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 400.0
DYD3_k127_1215001_13 mechanosensitive ion channel protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005541 396.0
DYD3_k127_1215001_14 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 390.0
DYD3_k127_1215001_15 Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates K01426,K01455,K18540 - 3.5.1.100,3.5.1.4,3.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 371.0
DYD3_k127_1215001_16 transcriptional regulator K09017 GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000003435 239.0
DYD3_k127_1215001_17 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000009315 226.0
DYD3_k127_1215001_18 SCO1/SenC K07152 - - 0.0000000000000000000000000000000000000000000000000008459 191.0
DYD3_k127_1215001_19 protein conserved in bacteria K09796 - - 0.0000000000000000000000000000000000000002613 154.0
DYD3_k127_1215001_2 Biotin carboxylase - - - 2.426e-246 767.0
DYD3_k127_1215001_20 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000000003644 100.0
DYD3_k127_1215001_21 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000002855 64.0
DYD3_k127_1215001_3 Amidohydrolase family K01464 - 3.5.2.2 2.985e-244 760.0
DYD3_k127_1215001_4 Dehydrogenase K17723 GO:0003674,GO:0003824,GO:0003954,GO:0006139,GO:0006206,GO:0006208,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016491,GO:0016651,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 1.3.1.1 1.42e-243 756.0
DYD3_k127_1215001_5 Peptidase family M28 K02083 - 3.5.3.9 5.791e-219 684.0
DYD3_k127_1215001_6 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K17722 - 1.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 604.0
DYD3_k127_1215001_7 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 549.0
DYD3_k127_1215001_8 Carbon-nitrogen hydrolase K01431 - 3.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006076 512.0
DYD3_k127_1215001_9 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004829 488.0
DYD3_k127_1217531_0 sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 393.0
DYD3_k127_1217531_1 - K13662 - - 0.000000000000000000000000000000000000000000000000000000000000000004833 242.0
DYD3_k127_1217531_2 Glycosyltransferase K13657 - 2.4.1.252 0.0000000000000000000000000000000000000000000000000000006328 207.0
DYD3_k127_1217531_3 Glycosyl transferase WecB/TagA/CpsF family K05946,K13660 - 2.4.1.187 0.00000000000000000000000000000000000000000000000000009096 196.0
DYD3_k127_1217531_4 Sugar-transfer associated ATP-grasp - - - 0.00000000000000000000000000000000000000000000000000466 196.0
DYD3_k127_1217531_5 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.0000000000000000000000000000000000000000000000001401 194.0
DYD3_k127_1217531_6 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000347 182.0
DYD3_k127_1217531_7 lipolytic protein G-D-S-L family - - - 0.00001698 53.0
DYD3_k127_1219086_0 2Fe-2S iron-sulfur cluster binding domain K00123 - 1.17.1.9 0.0 1193.0
DYD3_k127_1219086_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122 - 1.17.1.9 5.94e-263 820.0
DYD3_k127_1219086_2 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002974 456.0
DYD3_k127_1219086_3 signal transduction histidine kinase K13588 - - 0.0000000000000000000000000000000000000000000000000000009328 203.0
DYD3_k127_1219086_4 Protein of unknown function (DUF3553) - - - 0.000000000000000005425 85.0
DYD3_k127_1258625_0 Proton-conducting membrane transporter K00343,K05568 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 593.0
DYD3_k127_1258625_1 Proton-conducting membrane transporter K00341,K05568 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 344.0
DYD3_k127_1258625_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001325 256.0
DYD3_k127_1258625_3 COG2111 Multisubunit Na H antiporter, MnhB subunit K05566 - - 0.000000000000000000000000000000000000000000000000000000001101 205.0
DYD3_k127_1258625_4 COG2111 Multisubunit Na H antiporter, MnhB subunit - - - 0.0000000000000000000000000000000000000000000000000002337 188.0
DYD3_k127_1258625_5 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K05567 - - 0.00000000000000000000000000000000000000000000000008548 180.0
DYD3_k127_1258625_6 Na+/H+ ion antiporter subunit K05569 - - 0.000000000000000000000000000000000000000000000001325 179.0
DYD3_k127_1258625_7 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000001129 173.0
DYD3_k127_1258625_8 monovalent cation:proton antiporter activity K05571 - - 0.00000000000000000000000000001202 121.0
DYD3_k127_1258625_9 Multiple resistance and pH regulation protein F K05570 - - 0.0000000000000000000000000000849 122.0
DYD3_k127_1266080_0 Monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 - 3.6.3.17 7.27e-254 792.0
DYD3_k127_1266080_1 Branched-chain amino acid transport system / permease component K10440 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008684 522.0
DYD3_k127_1266080_2 Branched-chain amino acid transport system / permease component K10440 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 498.0
DYD3_k127_1266080_3 Periplasmic binding protein domain K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 301.0
DYD3_k127_1274367_0 extracellular solute-binding protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 599.0
DYD3_k127_1274367_1 TOBE domain K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 505.0
DYD3_k127_1274367_2 transport system permease K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 478.0
DYD3_k127_1274367_3 PFAM binding-protein-dependent transport systems inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005011 442.0
DYD3_k127_1274367_4 Transposase DDE domain group 1 - - - 0.0000000000000000000000000000000000005575 143.0
DYD3_k127_1274367_5 Pentapeptide repeats (9 copies) - - - 0.000000236 52.0
DYD3_k127_1333889_0 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 440.0
DYD3_k127_1333889_1 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005242 280.0
DYD3_k127_1333889_2 Protein of unknown function (DUF3365) - - - 0.000000000000000000000000006653 117.0
DYD3_k127_1341622_0 Terminase RNaseH-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 557.0
DYD3_k127_1341622_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 398.0
DYD3_k127_1341622_2 Transposase and inactivated derivatives - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001573 252.0
DYD3_k127_1341622_3 Phage portal protein - - - 0.0000000000000000000000000000000000000002299 154.0
DYD3_k127_1341622_4 PFAM Terminase small subunit K07474 - - 0.00000000000000000000000000005663 123.0
DYD3_k127_1407228_0 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001726 282.0
DYD3_k127_1407228_1 - - - - 0.000000000000000000000000292 109.0
DYD3_k127_1407228_2 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.0000000001107 67.0
DYD3_k127_1411989_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.03e-298 924.0
DYD3_k127_1411989_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 555.0
DYD3_k127_1411989_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 495.0
DYD3_k127_1411989_3 Protein of unknown function (DUF3365) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004152 355.0
DYD3_k127_1411989_4 COG1335 Amidases related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000000001007 230.0
DYD3_k127_1411989_5 Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000009453 192.0
DYD3_k127_1411989_6 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000002782 109.0
DYD3_k127_1421500_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 444.0
DYD3_k127_1450961_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 2.872e-200 641.0
DYD3_k127_1450961_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003233 499.0
DYD3_k127_1450961_10 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001595 281.0
DYD3_k127_1450961_11 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001427 273.0
DYD3_k127_1450961_12 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000005845 209.0
DYD3_k127_1450961_13 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000001254 154.0
DYD3_k127_1450961_14 - - - - 0.0000000000000000000000000003329 130.0
DYD3_k127_1450961_2 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 459.0
DYD3_k127_1450961_3 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 448.0
DYD3_k127_1450961_4 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 410.0
DYD3_k127_1450961_5 COG2202 FOG PAS PAC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 381.0
DYD3_k127_1450961_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 366.0
DYD3_k127_1450961_7 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006721 339.0
DYD3_k127_1450961_8 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 340.0
DYD3_k127_1450961_9 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006571 283.0
DYD3_k127_1502795_0 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 7.451e-283 875.0
DYD3_k127_1502795_1 Acetyl propionyl-CoA carboxylase alpha subunit K01965 GO:0003674,GO:0003824,GO:0004658,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009374,GO:0009987,GO:0016421,GO:0016874,GO:0016885,GO:0017144,GO:0019752,GO:0019842,GO:0019899,GO:0031406,GO:0031974,GO:0032787,GO:0033218,GO:0033293,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901681 6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 481.0
DYD3_k127_1502795_2 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 353.0
DYD3_k127_1502795_3 Alpha/beta hydrolase of unknown function (DUF900) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 319.0
DYD3_k127_1502795_4 Belongs to the GST superfamily K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000008676 233.0
DYD3_k127_1502795_5 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000001021 143.0
DYD3_k127_1502795_6 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000002834 139.0
DYD3_k127_1502795_7 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000003484 143.0
DYD3_k127_1502795_8 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000004222 138.0
DYD3_k127_1502795_9 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.0000000000000000000000000003684 117.0
DYD3_k127_1517426_0 COG1178 ABC-type Fe3 transport system, permease component K02011 - - 6.667e-237 744.0
DYD3_k127_1517426_1 Histidine kinase K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 527.0
DYD3_k127_1534175_0 Calcineurin-like phosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004724 432.0
DYD3_k127_1534175_1 CDP-archaeol synthase K19664 - 2.7.7.67 0.00000000000000000000000000000000000000000000000001663 184.0
DYD3_k127_1534175_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000005814 142.0
DYD3_k127_1534175_3 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.000000003884 57.0
DYD3_k127_1553476_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 2.8e-322 992.0
DYD3_k127_1553476_1 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 3.885e-292 906.0
DYD3_k127_1553476_10 Regulatory protein GntR HTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001609 274.0
DYD3_k127_1553476_11 KR domain K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000001075 271.0
DYD3_k127_1553476_12 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000003473 93.0
DYD3_k127_1553476_2 Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate K07749 - 2.8.3.16 1.26e-236 735.0
DYD3_k127_1553476_3 SAF K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 609.0
DYD3_k127_1553476_4 Dehydrogenase K00052 GO:0006082,GO:0006575,GO:0006732,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0019297,GO:0019298,GO:0019752,GO:0032787,GO:0042398,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491 460.0
DYD3_k127_1553476_5 Phytanoyl-CoA dioxygenase (PhyH) K10674 - 1.14.11.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 408.0
DYD3_k127_1553476_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 385.0
DYD3_k127_1553476_7 Belongs to the short-chain dehydrogenases reductases (SDR) family K21883 - 1.1.1.401 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 340.0
DYD3_k127_1553476_8 ADP-glyceromanno-heptose 6-epimerase activity K01709,K22025 - 1.1.1.410,4.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 339.0
DYD3_k127_1553476_9 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 324.0
DYD3_k127_1558065_0 COG2274 ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain K12541 - - 0.0 1020.0
DYD3_k127_1558065_1 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 1.454e-245 774.0
DYD3_k127_1558065_10 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 397.0
DYD3_k127_1558065_11 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 397.0
DYD3_k127_1558065_12 Wzy family polymerase, exosortase system type 1 associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009469 357.0
DYD3_k127_1558065_13 Uncharacterised nucleotidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 314.0
DYD3_k127_1558065_14 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.000000000000000000000000000000000000000000000000000000000000000000007857 242.0
DYD3_k127_1558065_15 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.00000000000000000000000000000000000000000000000000007417 199.0
DYD3_k127_1558065_16 gag-polyprotein putative aspartyl protease - - - 0.0000000000000000000000000000000000000000001345 168.0
DYD3_k127_1558065_17 Cytochrome c2 K08738 - - 0.00000000000000000000000000000000000000003707 156.0
DYD3_k127_1558065_18 Ribbon-helix-helix domain - - - 0.00000000000000000000000000000000000002188 152.0
DYD3_k127_1558065_19 Staphylococcal nuclease homologue - - - 0.000000000000000000000001568 109.0
DYD3_k127_1558065_2 FAD dependent oxidoreductase - - - 4.242e-239 747.0
DYD3_k127_1558065_20 Staphylococcal nuclease homologues - - - 0.000000000000000000001233 103.0
DYD3_k127_1558065_21 PEP-CTERM motif - - - 0.00000000000000000004335 96.0
DYD3_k127_1558065_25 VanZ like family - - - 0.0005026 49.0
DYD3_k127_1558065_3 PHB de-polymerase C-terminus K05973 - 3.1.1.75 7.466e-197 624.0
DYD3_k127_1558065_4 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 613.0
DYD3_k127_1558065_5 TIGRFAM type I secretion outer membrane protein, TolC family K12543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 546.0
DYD3_k127_1558065_6 Glycosyl transferases group 1 K00786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 520.0
DYD3_k127_1558065_7 Type I secretion membrane fusion protein, HlyD K12542 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008921 505.0
DYD3_k127_1558065_8 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 499.0
DYD3_k127_1558065_9 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 420.0
DYD3_k127_1565946_0 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 445.0
DYD3_k127_1565946_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 349.0
DYD3_k127_1565946_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000141 272.0
DYD3_k127_1565946_3 Cupin 2, conserved barrel domain protein K21700 - - 0.0000000000000000000000000000000000001048 145.0
DYD3_k127_1565946_4 Cytotoxic translational repressor of toxin-antitoxin stability system - - - 0.00000000000000000000000000000000306 130.0
DYD3_k127_1565946_5 transcriptional regulator K07726 - - 0.000000000000000000000007041 104.0
DYD3_k127_1597501_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 7.626e-311 963.0
DYD3_k127_1597501_1 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.00000000000000000000000000000000000000000000000000002431 190.0
DYD3_k127_1597501_2 Belongs to the BolA IbaG family - - - 0.0000000000000000000000000000000005267 138.0
DYD3_k127_1597501_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000009058 88.0
DYD3_k127_1760134_0 type VI secretion ATPase, ClpV1 family K11907 - - 0.0 1312.0
DYD3_k127_1760134_1 PFAM Tripartite tricarboxylate transporter TctA family K07793 - - 4.651e-252 788.0
DYD3_k127_1760134_10 Protein conserved in bacteria K11904 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 454.0
DYD3_k127_1760134_11 Belongs to the LDH2 MDH2 oxidoreductase family K00073,K13574 - 1.1.1.350 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 407.0
DYD3_k127_1760134_12 Peptidase family S58 K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004382 351.0
DYD3_k127_1760134_13 COG3157 Hemolysin-coregulated protein K11903 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009867 274.0
DYD3_k127_1760134_14 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000001575 222.0
DYD3_k127_1760134_15 Protein phosphatase 2C - - - 0.0000000000000000000000000000000000000000000000000000000000002028 224.0
DYD3_k127_1760134_16 PFAM cobalamin synthesis protein P47K - - - 0.0000000000000000000000000000000000000000000000000000001465 207.0
DYD3_k127_1760134_17 - - - - 0.0000000000000000000000000000000000000000000000000000002247 203.0
DYD3_k127_1760134_18 Uncharacterized protein conserved in bacteria (DUF2094) K11890 - - 0.000000000000000000000000000000000000000000000000000007808 200.0
DYD3_k127_1760134_19 Tripartite tricarboxylate transporter TctB family K07794 - - 0.00000000000000000000000000000000000000000000003412 176.0
DYD3_k127_1760134_2 DNA helicase K03654 - 3.6.4.12 8.161e-249 782.0
DYD3_k127_1760134_20 - - - - 0.00000000000000000000000000000000000000000003373 170.0
DYD3_k127_1760134_21 Domain of unknown function (DUF4280) - - - 0.00000000000000000000000000000000000001314 148.0
DYD3_k127_1760134_22 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.0000000000000000000000000000008457 139.0
DYD3_k127_1760134_3 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 6.9e-223 704.0
DYD3_k127_1760134_4 Amidohydrolase family - - - 5.779e-206 654.0
DYD3_k127_1760134_5 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 530.0
DYD3_k127_1760134_6 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 500.0
DYD3_k127_1760134_7 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 462.0
DYD3_k127_1760134_8 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 447.0
DYD3_k127_1760134_9 N-terminal TM domain of oligopeptide transport permease C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 437.0
DYD3_k127_1767896_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000006023 248.0
DYD3_k127_1767896_1 COQ9 K18587 - - 0.000000000000000000000000000000000000000000000000000000000000000006389 232.0
DYD3_k127_1767896_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000241 224.0
DYD3_k127_179635_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0 1005.0
DYD3_k127_179635_1 Histidine kinase K03407 - 2.7.13.3 1.033e-307 955.0
DYD3_k127_179635_10 chemotaxis protein K03408 - - 0.000000000000000000000000000000000000000000000000001264 188.0
DYD3_k127_179635_11 - - - - 0.00000000000000000000000000000000000000000000001655 192.0
DYD3_k127_179635_2 flagellum-specific ATP synthase K02412 - 3.6.3.14 4.578e-219 687.0
DYD3_k127_179635_3 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005758 437.0
DYD3_k127_179635_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006857 438.0
DYD3_k127_179635_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K13584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 414.0
DYD3_k127_179635_6 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 415.0
DYD3_k127_179635_7 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 307.0
DYD3_k127_179635_8 Flagellar GTP-binding protein K02404 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001379 253.0
DYD3_k127_179635_9 Response regulator receiver K03413 - - 0.000000000000000000000000000000000000000000000000000000000014 207.0
DYD3_k127_1812496_0 MgtE intracellular N domain - - - 6.835e-207 653.0
DYD3_k127_1812496_1 Belongs to the RimK family K05844,K14940 - 6.3.2.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 534.0
DYD3_k127_1812496_2 succinylglutamate desuccinylase K06987 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516 541.0
DYD3_k127_1812496_3 COG0330 Membrane protease subunits stomatin prohibitin homologs - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002525 454.0
DYD3_k127_1812496_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000167 220.0
DYD3_k127_1812496_5 dehydratase K17865 GO:0003674,GO:0003824,GO:0003859,GO:0006081,GO:0006082,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044281,GO:0046487,GO:0071704 4.2.1.55 0.000000000000000000000000000000000000000000000000000000001329 213.0
DYD3_k127_1812496_6 Ribosomal protein S6 modification protein - - - 0.000000000000000000000000000000000000000000000009647 182.0
DYD3_k127_1812496_7 NfeD-like C-terminal, partner-binding K07340 - - 0.000000000000000000000000000000000000003759 151.0
DYD3_k127_1812496_8 - - - - 0.000000000000000000000000000002471 123.0
DYD3_k127_1812496_9 Domain of unknown function (DUF4170) - - - 0.000000000000000000000000005611 111.0
DYD3_k127_1815807_0 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000001684 135.0
DYD3_k127_1815807_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000003406 67.0
DYD3_k127_1815807_2 DNA-binding transcription factor activity - - - 0.0000155 56.0
DYD3_k127_1826057_0 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 376.0
DYD3_k127_1826057_1 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 374.0
DYD3_k127_1826057_2 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.00000000000000000000000000000000000000000000000002789 193.0
DYD3_k127_1826057_3 - - - - 0.00000000000000000000000000000000000000000000000003333 181.0
DYD3_k127_1834131_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1147.0
DYD3_k127_1834131_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0 1030.0
DYD3_k127_1834131_10 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000171 279.0
DYD3_k127_1834131_11 Bacterial transcriptional repressor C-terminal K16137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001854 273.0
DYD3_k127_1834131_12 SOS response associated peptidase (SRAP) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001785 266.0
DYD3_k127_1834131_13 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000066 253.0
DYD3_k127_1834131_14 EVE domain - - - 0.0000000000000000000000000000000000000000000000000000000000006256 214.0
DYD3_k127_1834131_15 COG0784 FOG CheY-like receiver - - - 0.000000000000000000000000000000000000000000000000000000000004482 214.0
DYD3_k127_1834131_16 Protein of unknown function (DUF1203) - - - 0.00000000000000000000000000000000000000000000000000000000009741 207.0
DYD3_k127_1834131_17 YjbR - - - 0.0000000000000000000000000000000000000000000000000000000006001 203.0
DYD3_k127_1834131_18 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000004517 196.0
DYD3_k127_1834131_19 Bacterial-like globin - - - 0.0000000000000000000000000000000000000000002731 161.0
DYD3_k127_1834131_2 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 579.0
DYD3_k127_1834131_20 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000000000000000000000001281 147.0
DYD3_k127_1834131_21 Sel1-like repeats. K07126,K13582 - - 0.00000000000000000000000000000002037 139.0
DYD3_k127_1834131_22 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.000000000000000000000000000001557 124.0
DYD3_k127_1834131_23 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 0.0000000000000000000000000001719 115.0
DYD3_k127_1834131_24 COG0790 FOG TPR repeat, SEL1 subfamily K07126,K13582 - - 0.000000000000000000000000008597 123.0
DYD3_k127_1834131_25 phosphorelay signal transduction system - - - 0.000000000000000000000000009676 115.0
DYD3_k127_1834131_26 transcriptional regulator K07726 - - 0.0000000000000000000006427 98.0
DYD3_k127_1834131_27 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000001337 105.0
DYD3_k127_1834131_28 Cytotoxic translational repressor of toxin-antitoxin stability system - - - 0.00000000001282 70.0
DYD3_k127_1834131_3 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 518.0
DYD3_k127_1834131_30 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000001143 63.0
DYD3_k127_1834131_31 Protein of unknown function (DUF1344) - - - 0.000006764 51.0
DYD3_k127_1834131_33 Phasin protein - - - 0.00008729 50.0
DYD3_k127_1834131_35 - - - - 0.0001286 52.0
DYD3_k127_1834131_4 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004597 508.0
DYD3_k127_1834131_5 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006589 455.0
DYD3_k127_1834131_6 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 349.0
DYD3_k127_1834131_7 Cytochrome c, mono- and diheme variants - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 351.0
DYD3_k127_1834131_8 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 324.0
DYD3_k127_1834131_9 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 308.0
DYD3_k127_1842526_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1208.0
DYD3_k127_1882816_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 0.0 1040.0
DYD3_k127_1882816_1 - - - - 1.228e-315 983.0
DYD3_k127_1882816_10 TRAP transporter, 4TM 12TM fusion protein - - - 0.00000000000000000000000000000000000007321 145.0
DYD3_k127_1882816_11 Protein of unknown function (DUF2799) - - - 0.0000000000000000000000000001469 123.0
DYD3_k127_1882816_12 Aluminium induced protein K01953 - 6.3.5.4 0.0000000004683 62.0
DYD3_k127_1882816_2 Acyl-CoA dehydrogenase type 2 domain K00248 - 1.3.8.1 4.282e-268 836.0
DYD3_k127_1882816_3 Aminotransferase class-III - - - 2.538e-198 627.0
DYD3_k127_1882816_4 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 594.0
DYD3_k127_1882816_5 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 463.0
DYD3_k127_1882816_6 transduction histidine kinase K07716 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003747 413.0
DYD3_k127_1882816_7 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 324.0
DYD3_k127_1882816_8 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001564 274.0
DYD3_k127_1882816_9 TRAP transporter solute receptor TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000003356 233.0
DYD3_k127_1891632_0 YqaJ-like viral recombinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 335.0
DYD3_k127_1891632_1 DEAD-like helicases superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 310.0
DYD3_k127_1891632_2 Belongs to the N(4) N(6)-methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005746 269.0
DYD3_k127_1891632_3 ERF superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001199 248.0
DYD3_k127_1891632_4 - - - - 0.000000000000000000000000000000003977 135.0
DYD3_k127_1891632_7 COG3279 Response regulator of the LytR AlgR family K08083 - - 0.0000008634 55.0
DYD3_k127_1891632_9 nuclear chromosome segregation - - - 0.0008007 44.0
DYD3_k127_1899778_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.432e-267 839.0
DYD3_k127_1899778_1 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 1.293e-232 730.0
DYD3_k127_1899778_10 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004447 276.0
DYD3_k127_1899778_11 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000008285 235.0
DYD3_k127_1899778_12 dehydratase - - - 0.0000000000000000000000000000000000000000000000005196 182.0
DYD3_k127_1899778_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 8.572e-207 656.0
DYD3_k127_1899778_3 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 614.0
DYD3_k127_1899778_4 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 567.0
DYD3_k127_1899778_5 ATP-grasp domain K09181 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 517.0
DYD3_k127_1899778_6 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 467.0
DYD3_k127_1899778_7 Enoyl-CoA hydratase/isomerase K01715,K16880 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005106 358.0
DYD3_k127_1899778_8 helix_turn_helix isocitrate lyase regulation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005902 327.0
DYD3_k127_1899778_9 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 300.0
DYD3_k127_1903919_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1164.0
DYD3_k127_1903919_1 COG0744 Membrane carboxypeptidase (penicillin-binding protein) K05366 - 2.4.1.129,3.4.16.4 2.993e-232 737.0
DYD3_k127_1903919_10 Spermidine synthase tetramerisation domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 376.0
DYD3_k127_1903919_11 Belongs to the ABC transporter superfamily K10111,K10235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 369.0
DYD3_k127_1903919_12 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 347.0
DYD3_k127_1903919_13 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 343.0
DYD3_k127_1903919_14 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 299.0
DYD3_k127_1903919_15 EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003975 303.0
DYD3_k127_1903919_16 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000359 289.0
DYD3_k127_1903919_17 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.00000000000000000000000000000000000000000000000000000000000000000000000005735 268.0
DYD3_k127_1903919_18 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000002638 254.0
DYD3_k127_1903919_19 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009503 250.0
DYD3_k127_1903919_2 carbohydrate transport K02027,K05813 - - 4.109e-204 646.0
DYD3_k127_1903919_20 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000187 251.0
DYD3_k127_1903919_21 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000006908 233.0
DYD3_k127_1903919_22 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000001032 236.0
DYD3_k127_1903919_23 Protein of unknown function DUF45 K07043 - - 0.000000000000000000000000000000000000000000000000000000000000000001942 240.0
DYD3_k127_1903919_24 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.00000000000000000000000000000000000000000000000000000000001646 212.0
DYD3_k127_1903919_26 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.00000000000000000000000000000000000000000000000000000004452 205.0
DYD3_k127_1903919_27 methyltransferase activity - - - 0.0000000000000000000000000000000000000000000004446 173.0
DYD3_k127_1903919_28 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000002402 163.0
DYD3_k127_1903919_29 DNA repair protein MmcB-like - - - 0.00000000000000000000000000000000000000005954 157.0
DYD3_k127_1903919_3 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 564.0
DYD3_k127_1903919_30 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000001391 151.0
DYD3_k127_1903919_31 PAS domain - - - 0.000000000000000000000000000000001504 135.0
DYD3_k127_1903919_4 COG2059 Chromate transport protein ChrA K07240 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 536.0
DYD3_k127_1903919_5 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008939,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 462.0
DYD3_k127_1903919_6 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 438.0
DYD3_k127_1903919_7 Binding-protein-dependent transport system inner membrane component K05814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 424.0
DYD3_k127_1903919_8 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 391.0
DYD3_k127_1903919_9 glycerophosphodiester transmembrane transport K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003762 382.0
DYD3_k127_1908055_0 ABC-type Fe3 transport system permease component K02011 - - 1.691e-285 892.0
DYD3_k127_1908055_1 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 2.741e-229 730.0
DYD3_k127_1908055_10 Fumarylacetoacetate (FAA) hydrolase K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 415.0
DYD3_k127_1908055_11 Biopterin-dependent aromatic amino acid hydroxylase K00500 - 1.14.16.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005728 402.0
DYD3_k127_1908055_12 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 395.0
DYD3_k127_1908055_13 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 369.0
DYD3_k127_1908055_14 transcriptional regulator K21703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 353.0
DYD3_k127_1908055_15 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 351.0
DYD3_k127_1908055_16 AsmA family K07289 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 342.0
DYD3_k127_1908055_17 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006476 328.0
DYD3_k127_1908055_18 COG4531 ABC-type Zn2 transport system, periplasmic component surface adhesin K09815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 330.0
DYD3_k127_1908055_19 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 323.0
DYD3_k127_1908055_2 Multicopper oxidase - - - 3.885e-219 693.0
DYD3_k127_1908055_20 COG1108 ABC-type Mn2 Zn2 transport systems, permease components K02075,K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 313.0
DYD3_k127_1908055_21 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 307.0
DYD3_k127_1908055_22 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 306.0
DYD3_k127_1908055_23 Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system K09817 GO:0000041,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005385,GO:0005488,GO:0005524,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008144,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043492,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0072509,GO:0072511,GO:0097159,GO:0097367,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 297.0
DYD3_k127_1908055_24 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005084 265.0
DYD3_k127_1908055_25 Copper resistance protein B precursor (CopB) K07233 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004424 257.0
DYD3_k127_1908055_26 Belongs to the Fur family K09823 - - 0.0000000000000000000000000000000000000000000000000000000001703 208.0
DYD3_k127_1908055_27 Glutathione S-transferase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000009199 205.0
DYD3_k127_1908055_28 Copper binding proteins, plastocyanin/azurin family - - - 0.0000000000000000000000000000000000000000000000000000003078 199.0
DYD3_k127_1908055_29 - - - - 0.0000000000000000000000000000000000000004801 159.0
DYD3_k127_1908055_3 Na phosphate symporter K03324 - - 1.608e-199 636.0
DYD3_k127_1908055_30 - - - - 0.000000000000000000000000002179 122.0
DYD3_k127_1908055_4 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 609.0
DYD3_k127_1908055_5 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003581 556.0
DYD3_k127_1908055_6 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K03430 - 2.6.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 538.0
DYD3_k127_1908055_7 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 538.0
DYD3_k127_1908055_8 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02052 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 461.0
DYD3_k127_1908055_9 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 441.0
DYD3_k127_1925997_0 Belongs to the peptidase S16 family K04076 - 3.4.21.53 2.075e-260 825.0
DYD3_k127_1925997_1 COG2873 O-acetylhomoserine sulfhydrylase K01738,K01740 - 2.5.1.47,2.5.1.49 2.587e-210 663.0
DYD3_k127_1925997_10 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000007482 240.0
DYD3_k127_1925997_11 COG2873 O-acetylhomoserine sulfhydrylase K01738,K01740 - 2.5.1.47,2.5.1.49 0.00000000000000000000000000000000000000000000000000000000000000002258 228.0
DYD3_k127_1925997_12 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000008761 177.0
DYD3_k127_1925997_13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000002119 168.0
DYD3_k127_1925997_14 protein histidine kinase activity - - - 0.00000002259 64.0
DYD3_k127_1925997_2 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009813 528.0
DYD3_k127_1925997_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 495.0
DYD3_k127_1925997_4 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 438.0
DYD3_k127_1925997_5 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 367.0
DYD3_k127_1925997_6 Two component transcriptional regulator, winged helix family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 306.0
DYD3_k127_1925997_7 MFS_1 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000595 309.0
DYD3_k127_1925997_8 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005043 275.0
DYD3_k127_1925997_9 Transcriptional - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003735 263.0
DYD3_k127_1935041_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.0 1007.0
DYD3_k127_1935041_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 6.467e-250 776.0
DYD3_k127_1935041_10 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 463.0
DYD3_k127_1935041_11 C-C_Bond_Lyase of the TIM-Barrel fold K01644,K14451 - 3.1.2.30,4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 433.0
DYD3_k127_1935041_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004759 391.0
DYD3_k127_1935041_13 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 366.0
DYD3_k127_1935041_14 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 338.0
DYD3_k127_1935041_15 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 330.0
DYD3_k127_1935041_16 Phosphomethylpyrimidine kinase K00868 - 2.7.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004699 324.0
DYD3_k127_1935041_17 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000613 301.0
DYD3_k127_1935041_18 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 289.0
DYD3_k127_1935041_19 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002565 288.0
DYD3_k127_1935041_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 3.096e-209 661.0
DYD3_k127_1935041_20 EamA-like transporter family K15270 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001936 272.0
DYD3_k127_1935041_21 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003441 265.0
DYD3_k127_1935041_22 Domain of unknown function (DUF1993) - - - 0.0000000000000000000000000000000000000000000000000000000000000000218 229.0
DYD3_k127_1935041_23 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000001075 214.0
DYD3_k127_1935041_24 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000000000000000000004139 183.0
DYD3_k127_1935041_25 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000976 184.0
DYD3_k127_1935041_26 Putative FMN-binding domain K07734 - - 0.000000000000000000000000000000000000000000000001297 181.0
DYD3_k127_1935041_27 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000000000000000000006105 155.0
DYD3_k127_1935041_28 - - - - 0.00000000000000000000000000000000000003554 154.0
DYD3_k127_1935041_29 Succinate dehydrogenase, hydrophobic anchor subunit K00242 - - 0.0000000000000000000000000000000000003245 143.0
DYD3_k127_1935041_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 563.0
DYD3_k127_1935041_30 Protein of unknown function (DUF962) - - - 0.000000000000000000000000000000000002473 141.0
DYD3_k127_1935041_31 Excinuclease ABC, C subunit K07461 - - 0.00000000000000000000000000000000009748 134.0
DYD3_k127_1935041_32 - - - - 0.0000000000000000000000000000000001791 143.0
DYD3_k127_1935041_33 - - - - 0.0000000000000000000000000000003122 129.0
DYD3_k127_1935041_34 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000001269 83.0
DYD3_k127_1935041_35 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000002859 78.0
DYD3_k127_1935041_36 Pyridoxal-dependent decarboxylase conserved domain - - - 0.000000001503 59.0
DYD3_k127_1935041_4 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 554.0
DYD3_k127_1935041_5 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 543.0
DYD3_k127_1935041_6 Sulfotransferase domain K01014 - 2.8.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 518.0
DYD3_k127_1935041_7 MaoC like domain K14449 - 4.2.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 506.0
DYD3_k127_1935041_8 D-arabinono-1,4-lactone oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005545 505.0
DYD3_k127_1935041_9 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007099 473.0
DYD3_k127_1957671_0 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 339.0
DYD3_k127_1957671_1 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 307.0
DYD3_k127_1957671_2 Sulfotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002744 254.0
DYD3_k127_1957671_3 PFAM Cell wall hydrolase - - - 0.000000000000000000000000000000000000000004523 162.0
DYD3_k127_1957671_4 phosphonoacetaldehyde hydrolase activity K00817,K07025,K20866 - 2.6.1.9,3.1.3.10 0.0000000000000000000000000000000002491 147.0
DYD3_k127_1957671_5 YGGT family K02221 - - 0.000000000000000000000000000005083 122.0
DYD3_k127_1957671_6 Belongs to the UPF0235 family K09131 - - 0.00000000000000000000002532 103.0
DYD3_k127_1957671_7 Gram-negative porin K08720 - - 0.000000000000000000009111 102.0
DYD3_k127_1988261_0 Metallopeptidase family M24 - - - 2.371e-196 624.0
DYD3_k127_1988261_1 Acetamidase/Formamidase family K01455 - 3.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 552.0
DYD3_k127_1988261_10 Domain of unknown function (DUF4439) - - - 0.00000000000000000000000000000000000000000000000000000000000000005641 233.0
DYD3_k127_1988261_11 LysE type translocator - - - 0.0000000000000000000000000000000000000000000000000000000000000001101 229.0
DYD3_k127_1988261_12 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000000000003825 195.0
DYD3_k127_1988261_13 ribonucleoside-diphosphate reductase activity K07735 - - 0.000000000000000000000000000000000000000000001426 173.0
DYD3_k127_1988261_14 Cytochrome c - - - 0.00000000000000000000000000000000003327 138.0
DYD3_k127_1988261_15 - - - - 0.0000000000000000000000000000000005204 138.0
DYD3_k127_1988261_16 Belongs to the UPF0434 family K09791 - - 0.00000000000000000000000694 102.0
DYD3_k127_1988261_17 Protein of unknown function (DUF1674) - - - 0.000000001756 60.0
DYD3_k127_1988261_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003578 488.0
DYD3_k127_1988261_3 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 455.0
DYD3_k127_1988261_4 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 460.0
DYD3_k127_1988261_5 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005501 424.0
DYD3_k127_1988261_6 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006456 423.0
DYD3_k127_1988261_7 Thioredoxin K05838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006795 372.0
DYD3_k127_1988261_8 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 355.0
DYD3_k127_1988261_9 to the N-terminal domain of Lon protease K01338,K07157 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000003985 241.0
DYD3_k127_2022807_0 Belongs to the IlvD Edd family K01690 - 4.2.1.12 1.907e-309 955.0
DYD3_k127_2022807_1 COG0687 Spermidine putrescine-binding periplasmic protein - - - 2.308e-197 620.0
DYD3_k127_2022807_10 Protein of unknown function (DUF1207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 333.0
DYD3_k127_2022807_11 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000819 276.0
DYD3_k127_2022807_13 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000001161 248.0
DYD3_k127_2022807_14 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000016 233.0
DYD3_k127_2022807_15 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000001716 220.0
DYD3_k127_2022807_16 - - - - 0.00000000002984 76.0
DYD3_k127_2022807_18 Opacity family porin protein - - - 0.00000008476 62.0
DYD3_k127_2022807_19 - - - - 0.0000001356 64.0
DYD3_k127_2022807_2 PFAM SMP-30 Gluconolaconase LRE domain protein K01053,K14274 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 535.0
DYD3_k127_2022807_3 Belongs to the arginase family K01476,K18459 - 3.5.3.1,3.5.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005735 517.0
DYD3_k127_2022807_4 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 508.0
DYD3_k127_2022807_5 Binding-protein-dependent transport system inner membrane component K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 467.0
DYD3_k127_2022807_6 TOBE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 466.0
DYD3_k127_2022807_7 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000771 451.0
DYD3_k127_2022807_8 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000876 451.0
DYD3_k127_2022807_9 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 398.0
DYD3_k127_2060609_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.086e-237 741.0
DYD3_k127_2060609_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000841 542.0
DYD3_k127_2060609_2 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000002878 178.0
DYD3_k127_2060609_3 ABC1 family - - - 0.0000000000000000000000000000001068 124.0
DYD3_k127_2072551_0 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 340.0
DYD3_k127_2072551_1 Methylenetetrahydrofolate reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 327.0
DYD3_k127_2072551_2 Protein of unknown function (DUF1289) K06938 - - 0.0000000000000000003013 91.0
DYD3_k127_2072551_3 - - - - 0.000002617 53.0
DYD3_k127_2080296_0 MMPL family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 617.0
DYD3_k127_2080296_1 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008549 527.0
DYD3_k127_2080296_10 dehydratase - - - 0.0000000000000000000000002923 111.0
DYD3_k127_2080296_11 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000001486 115.0
DYD3_k127_2080296_12 Phosphopantetheine attachment site K02078 - - 0.000000000000000000000002466 104.0
DYD3_k127_2080296_2 AMP-binding enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 427.0
DYD3_k127_2080296_3 Bacterial lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008129 354.0
DYD3_k127_2080296_4 Tryptophan halogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006452 334.0
DYD3_k127_2080296_5 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 304.0
DYD3_k127_2080296_6 Beta-ketoacyl synthase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 300.0
DYD3_k127_2080296_7 glycosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005667 248.0
DYD3_k127_2080296_8 membrane - - - 0.00000000000000000000000000000000000000001261 162.0
DYD3_k127_2080296_9 - - - - 0.000000000000000000000000000000003556 133.0
DYD3_k127_2081319_0 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000001365 248.0
DYD3_k127_2081319_1 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000001458 174.0
DYD3_k127_2081319_2 Peptidase dimerisation domain - - - 0.00000000000000000000000000005496 121.0
DYD3_k127_2081319_3 response to cobalt ion - - - 0.00000000000000000271 94.0
DYD3_k127_2081319_4 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase - - - 0.00000000002303 74.0
DYD3_k127_2081319_5 17 kDa outer membrane surface antigen - - - 0.0000005568 59.0
DYD3_k127_2083642_0 Methylmalonyl-CoA mutase K14447 - 5.4.99.63 6.47e-322 996.0
DYD3_k127_2083642_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K14446 - 1.3.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 440.0
DYD3_k127_2100155_0 NADH ubiquinone oxidoreductase subunit 5 (chain L) multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 2.679e-317 981.0
DYD3_k127_2100155_1 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 7.794e-242 755.0
DYD3_k127_2100155_2 hydrolase of the metallo-beta-lactamase superfamily K12574 - - 9.631e-230 723.0
DYD3_k127_2100155_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 5.853e-198 627.0
DYD3_k127_2100155_4 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 287.0
DYD3_k127_2100155_5 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 310.0
DYD3_k127_2100155_6 Methylmalonyl-CoA epimerase K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000001521 237.0
DYD3_k127_2100155_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000000000000131 175.0
DYD3_k127_2100155_8 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.0000000000000000000000000000000000000000000002402 170.0
DYD3_k127_2100155_9 Protein of unknown function (DUF1467) - - - 0.00000000002398 64.0
DYD3_k127_2116402_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 6.282e-279 870.0
DYD3_k127_2116402_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 549.0
DYD3_k127_2116402_10 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 325.0
DYD3_k127_2116402_11 Type II secretory pathway, component ExeA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 311.0
DYD3_k127_2116402_12 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009041 318.0
DYD3_k127_2116402_13 PFAM NLP P60 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006019 262.0
DYD3_k127_2116402_14 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005822 255.0
DYD3_k127_2116402_15 Trypsin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000998 249.0
DYD3_k127_2116402_16 HAD-hyrolase-like K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000001656 204.0
DYD3_k127_2116402_17 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000000000000000000007923 211.0
DYD3_k127_2116402_18 PEP-CTERM motif - - - 0.000000000000000000000000002567 123.0
DYD3_k127_2116402_19 - - - - 0.0000000000001948 77.0
DYD3_k127_2116402_2 response regulator receiver K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 499.0
DYD3_k127_2116402_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 470.0
DYD3_k127_2116402_4 TIGRFAM FemAB-related protein, PEP-CTERM system-associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 456.0
DYD3_k127_2116402_5 PEP-CTERM system TPR-repeat lipoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009408 467.0
DYD3_k127_2116402_6 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 425.0
DYD3_k127_2116402_7 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 389.0
DYD3_k127_2116402_8 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000519 374.0
DYD3_k127_2116402_9 lipopolysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007548 338.0
DYD3_k127_211884_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1458.0
DYD3_k127_211884_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 3.261e-320 990.0
DYD3_k127_211884_10 Signal peptide peptidase K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 493.0
DYD3_k127_211884_11 Enoyl- acyl-carrier-protein reductase NADH K00208 GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 449.0
DYD3_k127_211884_12 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 436.0
DYD3_k127_211884_13 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007164 427.0
DYD3_k127_211884_14 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000842 412.0
DYD3_k127_211884_15 COG0530 Ca2 Na antiporter K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 417.0
DYD3_k127_211884_16 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 419.0
DYD3_k127_211884_17 Molecular chaperone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 403.0
DYD3_k127_211884_18 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 379.0
DYD3_k127_211884_19 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 384.0
DYD3_k127_211884_2 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component K11690 GO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425 - 1.134e-232 726.0
DYD3_k127_211884_20 Belongs to the FPP GGPP synthase family K00795 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005489 375.0
DYD3_k127_211884_21 rRNA methylase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 368.0
DYD3_k127_211884_22 C-terminal domain of 1-Cys peroxiredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 346.0
DYD3_k127_211884_23 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 314.0
DYD3_k127_211884_24 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001742 280.0
DYD3_k127_211884_25 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000206 265.0
DYD3_k127_211884_26 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003186 264.0
DYD3_k127_211884_27 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component K11689 - - 0.00000000000000000000000000000000000000000000000000000000000000000001108 239.0
DYD3_k127_211884_28 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000006007 220.0
DYD3_k127_211884_29 Putative 2OG-Fe(II) oxygenase - - - 0.000000000000000000000000000000000000000000000000000000000002951 214.0
DYD3_k127_211884_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 2.691e-219 690.0
DYD3_k127_211884_30 Putative AphA-like transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000004788 199.0
DYD3_k127_211884_31 surface antigen - - - 0.00000000000000000000000000000000000000000000000004809 184.0
DYD3_k127_211884_32 - - - - 0.0000000000000000000000000000000000000000000000711 171.0
DYD3_k127_211884_33 PFAM GCN5-related N-acetyltransferase K03830 - - 0.00000000000000000000000000000000000000001505 158.0
DYD3_k127_211884_34 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000001051 150.0
DYD3_k127_211884_35 - - - - 0.00000000000000000000000000000000000001144 156.0
DYD3_k127_211884_36 transcriptional regulators K22042 - - 0.0000000000000000000000000000000002459 135.0
DYD3_k127_211884_37 Dopa 4,5-dioxygenase family K10253 - - 0.000000000000000000000000000000006376 130.0
DYD3_k127_211884_38 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000009699 119.0
DYD3_k127_211884_39 small membrane protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000007155 119.0
DYD3_k127_211884_4 5-aminolevulinic acid synthase K00643 - 2.3.1.37 9.05e-199 625.0
DYD3_k127_211884_40 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000000000000001195 108.0
DYD3_k127_211884_41 MerR HTH family regulatory protein K18997 - - 0.0000000000000000000000001515 109.0
DYD3_k127_211884_42 transcriptional regulator - - - 0.0000007814 57.0
DYD3_k127_211884_43 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.00001985 54.0
DYD3_k127_211884_5 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 586.0
DYD3_k127_211884_6 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 550.0
DYD3_k127_211884_7 Psort location Cytoplasmic, score 7.50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 544.0
DYD3_k127_211884_8 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 514.0
DYD3_k127_211884_9 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 501.0
DYD3_k127_2128839_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 1.498e-289 896.0
DYD3_k127_2128839_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 1.007e-284 885.0
DYD3_k127_2128839_2 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008728 419.0
DYD3_k127_2128839_3 DNA polymerase III K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 295.0
DYD3_k127_2128839_4 (Lipo)protein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004588 274.0
DYD3_k127_2128839_5 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.0000000000000000000000000000001727 136.0
DYD3_k127_2128839_6 - K02221 - - 0.000000000000000000001589 97.0
DYD3_k127_2128839_7 - - - - 0.000000000000000000009888 96.0
DYD3_k127_2134889_0 Transcriptional regulator, AbiEi antitoxin - - - 0.0000000000000000000000000004763 123.0
DYD3_k127_2134889_1 Nucleotidyl transferase AbiEii toxin, Type IV TA system K09144 - - 0.00000000000000001028 94.0
DYD3_k127_2134889_2 - - - - 0.00000001143 59.0
DYD3_k127_213547_0 Bacterial extracellular solute-binding protein K17321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 380.0
DYD3_k127_213547_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 372.0
DYD3_k127_213547_11 SnoaL-like domain - - - 0.0000000000000000000000000000000000000000187 157.0
DYD3_k127_213547_12 disulfide bond formation protein DsbB K03611 - - 0.00000000000000000000000000000000006305 147.0
DYD3_k127_213547_2 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 306.0
DYD3_k127_213547_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001082 256.0
DYD3_k127_213547_4 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001091 256.0
DYD3_k127_213547_5 Phospholipase/Carboxylesterase K06999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002963 253.0
DYD3_k127_213547_6 AraC family K07506 - - 0.00000000000000000000000000000000000000000000000000000000000000000004451 242.0
DYD3_k127_213547_7 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000002292 215.0
DYD3_k127_213547_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000005847 201.0
DYD3_k127_213547_9 Cold shock protein domain K03704 - - 0.00000000000000000000000000000000000000000000000000000001753 206.0
DYD3_k127_2142874_0 GMC oxidoreductase - - - 5.144e-235 739.0
DYD3_k127_2142874_1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 - - 1.049e-224 711.0
DYD3_k127_2142874_10 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008379 360.0
DYD3_k127_2142874_11 Belongs to the ABC transporter superfamily K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 337.0
DYD3_k127_2142874_12 NADPH quinone reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 305.0
DYD3_k127_2142874_13 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 286.0
DYD3_k127_2142874_14 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005071 278.0
DYD3_k127_2142874_15 COG NOG14600 non supervised orthologous group - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002166 243.0
DYD3_k127_2142874_16 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.00000000000000000000000000000000000000000000000000000000000000000216 229.0
DYD3_k127_2142874_17 Protein of unknown function (DUF1428) - - - 0.0000000000000000000000000000000000000000000000000000000004311 203.0
DYD3_k127_2142874_18 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000000000000000006061 194.0
DYD3_k127_2142874_19 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000001769 177.0
DYD3_k127_2142874_2 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 2.439e-211 670.0
DYD3_k127_2142874_20 PFAM nuclease (SNase domain protein) - - - 0.00000000000000000000002077 107.0
DYD3_k127_2142874_21 Phospholipase_D-nuclease N-terminal - - - 0.000000000000000000001587 96.0
DYD3_k127_2142874_22 COG NOG15344 non supervised orthologous group - - - 0.00000000000000007607 81.0
DYD3_k127_2142874_23 - - - - 0.000000000000004059 83.0
DYD3_k127_2142874_24 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0000000005274 63.0
DYD3_k127_2142874_3 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 1.904e-196 617.0
DYD3_k127_2142874_4 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 567.0
DYD3_k127_2142874_5 COG0687 Spermidine putrescine-binding periplasmic protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 529.0
DYD3_k127_2142874_6 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 494.0
DYD3_k127_2142874_7 COG1176 ABC-type spermidine putrescine transport system, permease component I K02054,K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 458.0
DYD3_k127_2142874_8 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008372 420.0
DYD3_k127_2142874_9 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 383.0
DYD3_k127_2160491_0 COG1960 Acyl-CoA dehydrogenases K14448 - 1.3.8.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 601.0
DYD3_k127_2160491_1 Electron transfer flavoprotein K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 494.0
DYD3_k127_2160491_10 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000003043 217.0
DYD3_k127_2160491_11 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000000029 192.0
DYD3_k127_2160491_12 Acetyltransferase (GNAT) family K03824 - - 0.000000000000000000000000000000000000000000001227 173.0
DYD3_k127_2160491_13 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000002152 174.0
DYD3_k127_2160491_14 Hypoxia induced protein conserved region - - - 0.000000000003871 69.0
DYD3_k127_2160491_2 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 467.0
DYD3_k127_2160491_3 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 423.0
DYD3_k127_2160491_4 Sodium:dicarboxylate symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 422.0
DYD3_k127_2160491_5 Thiamine pyrophosphate enzyme, central domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 396.0
DYD3_k127_2160491_6 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 370.0
DYD3_k127_2160491_7 NnrS protein K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005037 333.0
DYD3_k127_2160491_8 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001012 281.0
DYD3_k127_2160491_9 transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003787 304.0
DYD3_k127_2173100_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 583.0
DYD3_k127_2173100_1 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005848 428.0
DYD3_k127_2173100_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000000000000003926 177.0
DYD3_k127_2173100_3 Usg-like family - - - 0.00000000000000000000000000000002614 130.0
DYD3_k127_2177069_0 2Fe-2S iron-sulfur cluster binding domain K00302 - 1.5.3.1 0.0 1171.0
DYD3_k127_2177069_1 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 5.283e-308 949.0
DYD3_k127_2177069_10 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 390.0
DYD3_k127_2177069_11 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 332.0
DYD3_k127_2177069_12 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 306.0
DYD3_k127_2177069_13 response to heat K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000003061 234.0
DYD3_k127_2177069_14 Sarcosine oxidase, gamma subunit family K00305 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000001107 226.0
DYD3_k127_2177069_15 pkhd-type hydroxylase K07336 - - 0.000000000000000000000000000000000000000000000000000000000000005116 224.0
DYD3_k127_2177069_16 nuclease - - - 0.000000000000000000000000000000000000002564 152.0
DYD3_k127_2177069_17 Sarcosine oxidase, delta subunit family K00304 - 1.5.3.1 0.00000000000000000000000000000000000001378 156.0
DYD3_k127_2177069_18 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000002792 142.0
DYD3_k127_2177069_19 - - - - 0.000000000000000000000000000000000005289 143.0
DYD3_k127_2177069_2 Tripartite tricarboxylate transporter TctA family K07793 - - 2.075e-218 687.0
DYD3_k127_2177069_20 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000002096 138.0
DYD3_k127_2177069_21 - - - - 0.00000000000000000001154 97.0
DYD3_k127_2177069_22 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.0000000000000000002976 94.0
DYD3_k127_2177069_23 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000009399 90.0
DYD3_k127_2177069_24 17 kDa surface antigen - - - 0.000000000002234 74.0
DYD3_k127_2177069_26 Protein of unknown function (DUF2384) - - - 0.00002731 51.0
DYD3_k127_2177069_3 Sarcosine oxidase K00303 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 604.0
DYD3_k127_2177069_4 membrane protein, required for spore maturation in B.subtilis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003389 579.0
DYD3_k127_2177069_5 RNA polymerase sigma K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 483.0
DYD3_k127_2177069_6 Peptidase family M20/M25/M40 K06016 - 3.5.1.6,3.5.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 467.0
DYD3_k127_2177069_7 serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 474.0
DYD3_k127_2177069_8 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004587 418.0
DYD3_k127_2177069_9 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 402.0
DYD3_k127_2227607_0 Type II/IV secretion system protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 549.0
DYD3_k127_2227607_1 Pilus formation protein N terminal region K02280 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 428.0
DYD3_k127_2227607_10 peptidyl-tyrosine sulfation - - - 0.00000000000000000000006034 111.0
DYD3_k127_2227607_11 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000000007002 114.0
DYD3_k127_2227607_12 TadE-like protein - - - 0.0000000000000000000005189 104.0
DYD3_k127_2227607_13 TadE-like protein - - - 0.0002177 51.0
DYD3_k127_2227607_2 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 291.0
DYD3_k127_2227607_3 Pilus assembly protein K02282 - - 0.000000000000000000000000000000000000000001198 173.0
DYD3_k127_2227607_4 Type II secretion system (T2SS), protein F - - - 0.0000000000000000000000000000000000000001963 160.0
DYD3_k127_2227607_5 Type II secretion system (T2SS), protein F K12511 - - 0.00000000000000000000000000000000000001699 155.0
DYD3_k127_2227607_6 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000003369 130.0
DYD3_k127_2227607_7 PFAM regulatory protein, ArsR K03892 - - 0.00000000000000000000000000001312 120.0
DYD3_k127_2227607_8 Pilus assembly protein CpaB K02279 - - 0.000000000000000000000000003309 123.0
DYD3_k127_2227607_9 Response regulator receiver - - - 0.00000000000000000000000001839 124.0
DYD3_k127_2238344_0 Belongs to the GcvT family K00314 - 1.5.8.3 0.0 1491.0
DYD3_k127_2238344_1 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate K00108 - 1.1.99.1 7.228e-288 895.0
DYD3_k127_2238344_10 Predicted permease YjgP/YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 370.0
DYD3_k127_2238344_11 Predicted permease YjgP/YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 362.0
DYD3_k127_2238344_12 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006304 344.0
DYD3_k127_2238344_13 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 336.0
DYD3_k127_2238344_14 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 319.0
DYD3_k127_2238344_15 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 329.0
DYD3_k127_2238344_16 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 314.0
DYD3_k127_2238344_17 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 287.0
DYD3_k127_2238344_18 COG2202 FOG PAS PAC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006577 244.0
DYD3_k127_2238344_19 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000001961 244.0
DYD3_k127_2238344_2 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 4.569e-235 748.0
DYD3_k127_2238344_20 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000004864 232.0
DYD3_k127_2238344_21 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000001605 212.0
DYD3_k127_2238344_22 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000484 215.0
DYD3_k127_2238344_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 559.0
DYD3_k127_2238344_4 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 544.0
DYD3_k127_2238344_5 COG4175 ABC-type proline glycine betaine transport system ATPase component K02000 GO:0000166,GO:0003674,GO:0004888,GO:0005034,GO:0005215,GO:0005275,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0009628,GO:0009987,GO:0015695,GO:0015696,GO:0015697,GO:0015837,GO:0015838,GO:0016020,GO:0016021,GO:0017076,GO:0022857,GO:0023052,GO:0030554,GO:0031224,GO:0031460,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0038023,GO:0043167,GO:0043168,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060089,GO:0065007,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 534.0
DYD3_k127_2238344_6 Substrate binding domain of ABC-type glycine betaine transport system K02002 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 450.0
DYD3_k127_2238344_7 Binding-protein-dependent transport system inner membrane component K02001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 424.0
DYD3_k127_2238344_8 COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00544,K00548 - 2.1.1.13,2.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 423.0
DYD3_k127_2238344_9 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 383.0
DYD3_k127_2241193_0 Belongs to the GcvT family - - - 0.0 1118.0
DYD3_k127_2241193_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 1.803e-315 983.0
DYD3_k127_2241193_10 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 1.085e-217 687.0
DYD3_k127_2241193_11 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 3.241e-216 679.0
DYD3_k127_2241193_12 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 3.339e-209 658.0
DYD3_k127_2241193_13 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 1.514e-208 657.0
DYD3_k127_2241193_14 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 2.525e-207 654.0
DYD3_k127_2241193_15 Competence protein K02238 - - 9.409e-200 646.0
DYD3_k127_2241193_16 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 599.0
DYD3_k127_2241193_17 Sodium Bile acid symporter family K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 564.0
DYD3_k127_2241193_18 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 558.0
DYD3_k127_2241193_19 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 558.0
DYD3_k127_2241193_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 6.982e-300 925.0
DYD3_k127_2241193_20 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162,K00627 - 1.2.4.1,2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 553.0
DYD3_k127_2241193_21 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 520.0
DYD3_k127_2241193_22 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 507.0
DYD3_k127_2241193_23 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 504.0
DYD3_k127_2241193_24 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004256 503.0
DYD3_k127_2241193_25 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 496.0
DYD3_k127_2241193_26 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 483.0
DYD3_k127_2241193_27 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 483.0
DYD3_k127_2241193_28 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000751 481.0
DYD3_k127_2241193_29 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 470.0
DYD3_k127_2241193_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 7.181e-295 924.0
DYD3_k127_2241193_30 peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006167 479.0
DYD3_k127_2241193_31 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005208 462.0
DYD3_k127_2241193_32 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 449.0
DYD3_k127_2241193_33 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002713 434.0
DYD3_k127_2241193_34 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006598 402.0
DYD3_k127_2241193_35 Amino-transferase class IV K00824 - 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 379.0
DYD3_k127_2241193_36 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 366.0
DYD3_k127_2241193_37 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008844 372.0
DYD3_k127_2241193_38 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 357.0
DYD3_k127_2241193_39 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005251 331.0
DYD3_k127_2241193_4 glutaminyl-tRNA synthetase K01886 - 6.1.1.18 9.271e-287 888.0
DYD3_k127_2241193_40 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 321.0
DYD3_k127_2241193_41 protein conserved in bacteria K09949 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 324.0
DYD3_k127_2241193_42 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 299.0
DYD3_k127_2241193_43 COG0512 Anthranilate para-aminobenzoate synthases component II K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 295.0
DYD3_k127_2241193_44 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008651 269.0
DYD3_k127_2241193_45 protein conserved in bacteria K09798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006355 267.0
DYD3_k127_2241193_46 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000006475 263.0
DYD3_k127_2241193_47 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000003839 246.0
DYD3_k127_2241193_48 HAD-superfamily hydrolase subfamily IA, variant 1 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000005016 248.0
DYD3_k127_2241193_49 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000466 242.0
DYD3_k127_2241193_5 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 2.104e-269 850.0
DYD3_k127_2241193_50 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000001061 231.0
DYD3_k127_2241193_51 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000001241 241.0
DYD3_k127_2241193_52 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000008674 222.0
DYD3_k127_2241193_53 COG2867 Oligoketide cyclase lipid transport protein K18588 - - 0.00000000000000000000000000000000000000000000000000000000000002649 219.0
DYD3_k127_2241193_54 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000936 201.0
DYD3_k127_2241193_55 helix_turn_helix, mercury resistance K19591 - - 0.000000000000000000000000000000000000000000000000001944 185.0
DYD3_k127_2241193_56 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000004969 195.0
DYD3_k127_2241193_57 PFAM DinB family protein - - - 0.00000000000000000000000000000000000000000000000001037 185.0
DYD3_k127_2241193_58 Belongs to the CinA family K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000001199 188.0
DYD3_k127_2241193_59 tRNA (Uracil-5-)-methyltransferase - - - 0.000000000000000000000000000000000000000000001149 173.0
DYD3_k127_2241193_6 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 2.806e-247 769.0
DYD3_k127_2241193_60 Cupin domain - - - 0.00000000000000000000000000000000000000000001158 166.0
DYD3_k127_2241193_61 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000000000000000000000001471 165.0
DYD3_k127_2241193_62 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006807,GO:0008150,GO:0008152,GO:0009399,GO:0071941,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000001493 146.0
DYD3_k127_2241193_63 COG2825 Outer membrane protein - - - 0.000000000000000000000000000005248 126.0
DYD3_k127_2241193_64 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000000007657 118.0
DYD3_k127_2241193_65 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000000000004074 116.0
DYD3_k127_2241193_66 Septum formation initiator - - - 0.00000000000000000000001325 103.0
DYD3_k127_2241193_68 COG1177 ABC-type spermidine putrescine transport system, permease component II K11070 - - 0.000000000000000000001587 96.0
DYD3_k127_2241193_69 PFAM Acetyltransferase (GNAT) family - - - 0.00000000000000121 87.0
DYD3_k127_2241193_7 Belongs to the citrate synthase family K01647 - 2.3.3.1 2.989e-235 735.0
DYD3_k127_2241193_70 CAAX protease self-immunity K07052 - - 0.000000000000004025 88.0
DYD3_k127_2241193_71 ubiE/COQ5 methyltransferase family - - - 0.0002839 44.0
DYD3_k127_2241193_8 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 5.377e-232 726.0
DYD3_k127_2241193_9 Potassium transporter peripheral membrane component K03499 - - 9.978e-229 715.0
DYD3_k127_2264329_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 4.6e-265 830.0
DYD3_k127_2264329_1 Branched-chain amino acid transport system / permease component K01997,K01998 - - 6.22e-241 759.0
DYD3_k127_2264329_10 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 539.0
DYD3_k127_2264329_11 COG1520 FOG WD40-like repeat K17713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 505.0
DYD3_k127_2264329_12 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 451.0
DYD3_k127_2264329_13 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006443 438.0
DYD3_k127_2264329_14 malonyl CoA-acyl carrier protein transacylase K00645 GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 434.0
DYD3_k127_2264329_15 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 415.0
DYD3_k127_2264329_16 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 401.0
DYD3_k127_2264329_17 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 404.0
DYD3_k127_2264329_18 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008769 419.0
DYD3_k127_2264329_19 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K21826 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008944 381.0
DYD3_k127_2264329_2 FAD dependent oxidoreductase - - - 7.164e-233 728.0
DYD3_k127_2264329_20 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 371.0
DYD3_k127_2264329_21 class II Aldolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 343.0
DYD3_k127_2264329_22 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 342.0
DYD3_k127_2264329_23 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 322.0
DYD3_k127_2264329_24 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 307.0
DYD3_k127_2264329_25 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 292.0
DYD3_k127_2264329_26 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001908 281.0
DYD3_k127_2264329_27 Protein of unknown function (DUF1638) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002077 263.0
DYD3_k127_2264329_28 COG1145 Ferredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001855 256.0
DYD3_k127_2264329_29 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000000000001707 227.0
DYD3_k127_2264329_3 COG0402 Cytosine deaminase and related metal-dependent hydrolases - - - 4.839e-229 719.0
DYD3_k127_2264329_30 Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000001113 222.0
DYD3_k127_2264329_31 - - - - 0.00000000000000000000000000000000000000000000000000000000000002847 229.0
DYD3_k127_2264329_32 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000000000000009066 190.0
DYD3_k127_2264329_33 membrane protein, required for colicin V production K03558 - - 0.000000000000000000000000000000000000000000000000003185 190.0
DYD3_k127_2264329_34 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000000000000000005789 175.0
DYD3_k127_2264329_35 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000002539 155.0
DYD3_k127_2264329_36 Virulence factor - - - 0.000000000000000000000000000000000004841 140.0
DYD3_k127_2264329_37 enzyme involved in biosynthesis of extracellular polysaccharides - - - 0.000000000000000000000000000000001253 141.0
DYD3_k127_2264329_38 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001435 132.0
DYD3_k127_2264329_39 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000001485 133.0
DYD3_k127_2264329_4 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.827e-225 708.0
DYD3_k127_2264329_40 Zinc-binding dehydrogenase - - - 0.000000000000000000000000008504 114.0
DYD3_k127_2264329_41 Protein of unknown function (DUF2794) - - - 0.00000000000000000000007097 102.0
DYD3_k127_2264329_42 Transcriptional - - - 0.0000000000000000000002443 102.0
DYD3_k127_2264329_43 Protein of unknown function (DUF2937) - - - 0.00000000000000000005956 97.0
DYD3_k127_2264329_44 - - - - 0.000000000000000002261 89.0
DYD3_k127_2264329_45 Proteolipid membrane potential modulator - - - 0.000000000000000008197 85.0
DYD3_k127_2264329_46 - - - - 0.0000000000003756 79.0
DYD3_k127_2264329_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 9.903e-209 655.0
DYD3_k127_2264329_6 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 1.507e-199 634.0
DYD3_k127_2264329_7 histidine ammonia-lyase activity K01745 - 4.3.1.3 7.733e-195 621.0
DYD3_k127_2264329_8 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 607.0
DYD3_k127_2264329_9 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 608.0
DYD3_k127_2293817_0 malic enzyme K00029 - 1.1.1.40 0.0 1080.0
DYD3_k127_2293817_1 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 2.247e-220 687.0
DYD3_k127_2293817_10 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000000000006841 236.0
DYD3_k127_2293817_11 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000000000000000000006789 207.0
DYD3_k127_2293817_12 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000001674 205.0
DYD3_k127_2293817_13 PFAM Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000000000000000000000000000000000005251 193.0
DYD3_k127_2293817_14 Cupin 2, conserved barrel - - - 0.00000000000000000000000000000000000000000000000000007382 197.0
DYD3_k127_2293817_15 Glutathione S-transferase, N-terminal domain - - - 0.00000000000000000000000000000000000000000001929 168.0
DYD3_k127_2293817_16 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000003944 156.0
DYD3_k127_2293817_17 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000000000002331 145.0
DYD3_k127_2293817_18 lactoylglutathione lyase activity K01759 GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0050896 4.4.1.5 0.00000002815 55.0
DYD3_k127_2293817_19 molybdenum ion binding K00375,K07140 - - 0.00000005286 63.0
DYD3_k127_2293817_2 TIGRFAM TRAP transporter, DctM subunit - - - 1.177e-205 648.0
DYD3_k127_2293817_20 Zinc-binding dehydrogenase - - - 0.000003172 49.0
DYD3_k127_2293817_3 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 5.534e-201 639.0
DYD3_k127_2293817_4 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 595.0
DYD3_k127_2293817_5 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005622 539.0
DYD3_k127_2293817_6 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008127 323.0
DYD3_k127_2293817_7 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005291 319.0
DYD3_k127_2293817_8 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006938 298.0
DYD3_k127_2293817_9 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005211 248.0
DYD3_k127_2302736_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 2.712e-292 914.0
DYD3_k127_2302736_1 BCCT, betaine/carnitine/choline family transporter K03451 - - 4.44e-245 766.0
DYD3_k127_2302736_2 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006543 589.0
DYD3_k127_2302736_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 383.0
DYD3_k127_2302736_4 Aldo keto - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 379.0
DYD3_k127_2302736_5 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 317.0
DYD3_k127_2302736_6 VirC1 protein K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008035 271.0
DYD3_k127_2302736_7 - - - - 0.000000000000000000000000000000000000000000007449 171.0
DYD3_k127_2302736_8 - - - - 0.000001449 58.0
DYD3_k127_2350331_0 Belongs to the UbiD family K03182 - 4.1.1.98 1.782e-270 838.0
DYD3_k127_2350331_1 A circularly permuted ATPgrasp - - - 3.065e-229 718.0
DYD3_k127_2350331_2 Protein of unknown function DUF262 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 374.0
DYD3_k127_2350331_3 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005651 349.0
DYD3_k127_2350331_4 A predicted alpha-helical domain with a conserved ER motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006539 274.0
DYD3_k127_2350331_5 Oxalate decarboxylase - - - 0.0000000000000000000000000000002363 128.0
DYD3_k127_2350331_6 This protein is involved in the repair of mismatches in DNA K03555 - - 0.00001259 51.0
DYD3_k127_2430845_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 5.785e-284 897.0
DYD3_k127_2430845_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000614 532.0
DYD3_k127_2430845_10 ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007555 316.0
DYD3_k127_2430845_11 Uracil-DNA glycosylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001383 290.0
DYD3_k127_2430845_12 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000002464 229.0
DYD3_k127_2430845_13 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000007241 232.0
DYD3_k127_2430845_14 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000126 224.0
DYD3_k127_2430845_15 B3/4 domain - - - 0.0000000000000000000000000000000000000000000000000000000000001531 220.0
DYD3_k127_2430845_16 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000000000000000000000000000000000000000006516 217.0
DYD3_k127_2430845_17 Dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000294 203.0
DYD3_k127_2430845_18 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.000000000000000000000000000000000000000002206 164.0
DYD3_k127_2430845_19 Domain of unknown function (DUF1330) - - - 0.000000000000000000001468 96.0
DYD3_k127_2430845_2 nitrite reductase [NAD(P)H] activity K15762 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004142 486.0
DYD3_k127_2430845_20 - - - - 0.000000000002576 74.0
DYD3_k127_2430845_23 Protein of unknown function (DUF1036) - - - 0.0003634 51.0
DYD3_k127_2430845_3 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008146 452.0
DYD3_k127_2430845_4 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 425.0
DYD3_k127_2430845_5 FIST_C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 391.0
DYD3_k127_2430845_6 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 357.0
DYD3_k127_2430845_7 Domain present in phytochromes and cGMP-specific phosphodiesterases. K07716 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 377.0
DYD3_k127_2430845_8 Belongs to the BI1 family K06890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 345.0
DYD3_k127_2430845_9 KR domain K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 333.0
DYD3_k127_2444078_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 3.119e-300 926.0
DYD3_k127_2444078_1 Required for chromosome condensation and partitioning K03529 - - 1.566e-220 709.0
DYD3_k127_2444078_10 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 471.0
DYD3_k127_2444078_11 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 439.0
DYD3_k127_2444078_12 COG1194 A G-specific DNA glycosylase K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 427.0
DYD3_k127_2444078_13 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 366.0
DYD3_k127_2444078_14 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004659 284.0
DYD3_k127_2444078_15 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006953 276.0
DYD3_k127_2444078_16 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000445 263.0
DYD3_k127_2444078_17 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001498 256.0
DYD3_k127_2444078_18 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000002118 233.0
DYD3_k127_2444078_19 (GGDEF) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004679 235.0
DYD3_k127_2444078_2 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 620.0
DYD3_k127_2444078_20 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000001917 226.0
DYD3_k127_2444078_21 Protein conserved in bacteria K09931 - - 0.0000000000000000000000000000000000000000000000000000002446 199.0
DYD3_k127_2444078_22 Protein of unknown function (DUF3489) - - - 0.0000000000000000000000000000000000000001604 156.0
DYD3_k127_2444078_23 Protein of unknown function (DUF721) - - - 0.0000000000000000000000000000000001294 141.0
DYD3_k127_2444078_24 Protein of unknown function (DUF2924) - - - 0.00000000000000000000000000000551 125.0
DYD3_k127_2444078_25 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000408 43.0
DYD3_k127_2444078_26 Transglycosylase SLT domain K00786,K08305 - - 0.0004605 52.0
DYD3_k127_2444078_3 DNA methylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 593.0
DYD3_k127_2444078_4 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 582.0
DYD3_k127_2444078_5 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007133 589.0
DYD3_k127_2444078_6 Resolvase K06400 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 569.0
DYD3_k127_2444078_7 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 553.0
DYD3_k127_2444078_8 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 551.0
DYD3_k127_2444078_9 COG0475 Kef-type K transport systems, membrane components K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 514.0
DYD3_k127_2468437_0 Aminotransferase K00812 - 2.6.1.1 9.161e-215 672.0
DYD3_k127_2468437_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 1.834e-195 627.0
DYD3_k127_2468437_10 Creatinine amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 364.0
DYD3_k127_2468437_11 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 360.0
DYD3_k127_2468437_12 Domain of unknown function (DUF3291) - - - 0.0000000000000000000000000000000000000000000000000000000000000000006642 239.0
DYD3_k127_2468437_13 COG3764 Sortase (surface protein transpeptidase) K07284 - 3.4.22.70 0.000000000000000000000000000000000000000000001548 171.0
DYD3_k127_2468437_14 regulation of mitotic cell cycle - GO:0000922,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0007346,GO:0008150,GO:0015630,GO:0019899,GO:0019900,GO:0030496,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051233,GO:0051726,GO:0065007,GO:0072686,GO:0097431,GO:1990023 - 0.00002567 56.0
DYD3_k127_2468437_15 NADH-ubiquinone oxidoreductase subunit G, C-terminal K00336 - 1.6.5.3 0.0002177 44.0
DYD3_k127_2468437_2 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0008652,GO:0008743,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0030145,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046870,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 1.1.1.103 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008683 582.0
DYD3_k127_2468437_3 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0016874,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 572.0
DYD3_k127_2468437_4 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 576.0
DYD3_k127_2468437_5 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 441.0
DYD3_k127_2468437_6 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 426.0
DYD3_k127_2468437_7 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585 418.0
DYD3_k127_2468437_8 tryptophan 2,3-dioxygenase activity K00453,K03392 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11,4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 381.0
DYD3_k127_2468437_9 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008337 388.0
DYD3_k127_2489344_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 2.869e-254 790.0
DYD3_k127_2489344_1 Histidine kinase - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 9.013e-241 769.0
DYD3_k127_2489344_2 reductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008199 519.0
DYD3_k127_2489344_3 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 402.0
DYD3_k127_2489344_4 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000001639 235.0
DYD3_k127_2489344_5 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000000005271 171.0
DYD3_k127_2489344_6 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000009287 113.0
DYD3_k127_2489344_7 helix_turn_helix, mercury resistance K08365,K19591 - - 0.000000000000000001141 96.0
DYD3_k127_2489344_8 Membrane transport protein MerF - - - 0.0001038 51.0
DYD3_k127_2489344_9 Membrane transport protein MerF - - - 0.0002045 45.0
DYD3_k127_2508695_0 ADP-glyceromanno-heptose 6-epimerase activity K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000002437 271.0
DYD3_k127_2508695_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.00000000000000000000000000257 121.0
DYD3_k127_2530581_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 7.564e-231 734.0
DYD3_k127_2530581_1 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 415.0
DYD3_k127_2530581_2 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000004495 240.0
DYD3_k127_2530581_3 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000007045 184.0
DYD3_k127_2590875_0 SMP-30/Gluconolaconase/LRE-like region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 391.0
DYD3_k127_2590875_1 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000482 219.0
DYD3_k127_2590875_2 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000003601 157.0
DYD3_k127_2621863_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 555.0
DYD3_k127_2621863_1 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 492.0
DYD3_k127_2621863_10 Predicted integral membrane protein (DUF2282) - - - 0.000000000000000000000000007016 112.0
DYD3_k127_2621863_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 476.0
DYD3_k127_2621863_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 399.0
DYD3_k127_2621863_4 KR domain K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 374.0
DYD3_k127_2621863_5 belongs to the UPF0276 family K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 323.0
DYD3_k127_2621863_6 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 296.0
DYD3_k127_2621863_7 Cupin - - - 0.00000000000000000000000000000000000000000000000000485 188.0
DYD3_k127_2621863_8 DoxX - - - 0.0000000000000000000000000000000000000002457 154.0
DYD3_k127_2621863_9 Putative DNA-binding domain - - - 0.00000000000000000000000000000000000003588 154.0
DYD3_k127_2630108_0 Bacterial extracellular solute-binding protein K17321 - - 3.208e-275 854.0
DYD3_k127_2630108_1 Binding-protein-dependent transport system inner membrane component K17322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 499.0
DYD3_k127_2630108_2 PFAM binding-protein-dependent transport systems inner membrane component K02026,K17323 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 455.0
DYD3_k127_2630108_3 ATPases associated with a variety of cellular activities K17325 - - 0.0000000000000000000000000000000001437 135.0
DYD3_k127_2630108_4 Predicted small integral membrane protein (DUF2160) - - - 0.0000000000000000000000000000009111 135.0
DYD3_k127_2651535_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 4.853e-228 716.0
DYD3_k127_2651535_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 548.0
DYD3_k127_2651535_10 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000165 102.0
DYD3_k127_2651535_2 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 340.0
DYD3_k127_2651535_3 protein conserved in bacteria K09798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001129 274.0
DYD3_k127_2651535_4 COG4942 Membrane-bound metallopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006827 270.0
DYD3_k127_2651535_5 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000000000005326 218.0
DYD3_k127_2651535_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000000000000000002805 178.0
DYD3_k127_2651535_7 Produces ATP from ADP in the presence of a proton gradient across the membrane K02113,K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000002082 159.0
DYD3_k127_2651535_8 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000000000297 159.0
DYD3_k127_2651535_9 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.0000000000000000000000000001069 115.0
DYD3_k127_2687217_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006239 524.0
DYD3_k127_2687217_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 439.0
DYD3_k127_2687217_2 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 348.0
DYD3_k127_2687217_3 Phage integrase family - - - 0.000000000000000000004889 98.0
DYD3_k127_271187_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1478.0
DYD3_k127_271187_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 3.062e-276 854.0
DYD3_k127_271187_10 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 443.0
DYD3_k127_271187_11 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 445.0
DYD3_k127_271187_12 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 432.0
DYD3_k127_271187_13 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008133 435.0
DYD3_k127_271187_14 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006404 426.0
DYD3_k127_271187_15 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 419.0
DYD3_k127_271187_16 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 392.0
DYD3_k127_271187_17 3-carboxy-cis,cis-muconate cycloisomerase K01857 - 5.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 396.0
DYD3_k127_271187_18 Protocatechuate 3,4-dioxygenase beta subunit N terminal K00449 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008869 362.0
DYD3_k127_271187_19 transcriptional regulator K02623 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 343.0
DYD3_k127_271187_2 Transcriptional regulator K07110 - - 3.363e-241 755.0
DYD3_k127_271187_20 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 327.0
DYD3_k127_271187_21 NMT1/THI5 like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009883 346.0
DYD3_k127_271187_22 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 308.0
DYD3_k127_271187_23 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 303.0
DYD3_k127_271187_24 Bacterial regulatory proteins, tetR family K09017 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 294.0
DYD3_k127_271187_25 hydrolases or acyltransferases (alpha beta hydrolase superfamily) K01055,K14727 - 3.1.1.24,4.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001158 283.0
DYD3_k127_271187_26 Dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000001257 241.0
DYD3_k127_271187_27 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000009917 231.0
DYD3_k127_271187_28 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000248 197.0
DYD3_k127_271187_29 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000004394 199.0
DYD3_k127_271187_3 Branched-chain amino acid transport system / permease component K01998 - - 1.366e-199 626.0
DYD3_k127_271187_30 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000000001945 188.0
DYD3_k127_271187_31 Belongs to the binding-protein-dependent transport system permease family K10440,K17203,K17206 - - 0.0000000000000000000000000000000000000000000000001344 191.0
DYD3_k127_271187_32 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000001246 183.0
DYD3_k127_271187_33 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000005932 169.0
DYD3_k127_271187_34 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501 - 3.5.5.1 0.0000000000000000000000000000000000000000000189 172.0
DYD3_k127_271187_35 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000005661 160.0
DYD3_k127_271187_36 Branched-chain amino acid transport system / permease component K02057,K10440 - - 0.0000000000000000000000000000000000000002115 170.0
DYD3_k127_271187_37 COG5285 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.00000000000000000000000002701 118.0
DYD3_k127_271187_4 4-hydroxybenzoate K00481 GO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016705,GO:0016709,GO:0018659,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363 1.14.13.2 2.328e-198 623.0
DYD3_k127_271187_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 601.0
DYD3_k127_271187_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 600.0
DYD3_k127_271187_7 Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system K10441,K10539 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 569.0
DYD3_k127_271187_8 ABC-type sugar transport system periplasmic component K10439,K10543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004265 540.0
DYD3_k127_271187_9 Dihydrodipicolinate synthetase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004144 461.0
DYD3_k127_2721682_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 1.191e-246 776.0
DYD3_k127_2721682_1 Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate K01003 - 4.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 387.0
DYD3_k127_2721682_2 EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000001694 220.0
DYD3_k127_2721682_3 - - - - 0.000000000000000000000000000000000000000002005 170.0
DYD3_k127_2728303_0 argininosuccinate lyase K01755 - 4.3.2.1 5.935e-219 688.0
DYD3_k127_2728303_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 528.0
DYD3_k127_2728303_2 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 508.0
DYD3_k127_2728303_3 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 436.0
DYD3_k127_2728303_4 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000005053 197.0
DYD3_k127_2728303_5 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000000002872 184.0
DYD3_k127_2728303_6 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000007549 101.0
DYD3_k127_2733443_0 TonB-dependent receptor, beta-barrel - - - 3.345e-270 870.0
DYD3_k127_2733443_1 Spermidine putrescine-binding periplasmic protein K11069 - - 5.573e-195 613.0
DYD3_k127_2733443_10 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 340.0
DYD3_k127_2733443_11 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005626 264.0
DYD3_k127_2733443_12 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000378 245.0
DYD3_k127_2733443_13 PFAM transposase IS116 IS110 IS902 family K07486 - - 0.000000000000000000000000000000000000000000000000000000000268 209.0
DYD3_k127_2733443_14 IS66 Orf2 like protein K07484 - - 0.000000000000000000000000000000000000000000000000000001156 198.0
DYD3_k127_2733443_15 Transposase - - - 0.0000000000000000000000000000000000000000000000000003012 186.0
DYD3_k127_2733443_16 PFAM transposase IS116 IS110 IS902 family K07486 - - 0.00000000000000000000000000000000000000006508 153.0
DYD3_k127_2733443_17 COG3436 Transposase and inactivated derivatives - - - 0.0000000000000000000000000000000000001629 143.0
DYD3_k127_2733443_19 transposase activity - - - 0.000000000000000000000000000006723 125.0
DYD3_k127_2733443_2 COG2801 Transposase and inactivated derivatives K00986,K07497 - 2.7.7.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006005 533.0
DYD3_k127_2733443_20 Resolvase, N terminal domain - - - 0.0000000003595 63.0
DYD3_k127_2733443_21 Transposase K07484 - - 0.0000004941 56.0
DYD3_k127_2733443_3 TOBE domain K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 446.0
DYD3_k127_2733443_4 ABC-type spermidine putrescine transport system, permease component I K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 437.0
DYD3_k127_2733443_5 SMART Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005048 457.0
DYD3_k127_2733443_6 Binding-protein-dependent transport system inner membrane component K11070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 392.0
DYD3_k127_2733443_7 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 393.0
DYD3_k127_2733443_8 transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 368.0
DYD3_k127_2733443_9 Predicted integral membrane protein (DUF2189) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 357.0
DYD3_k127_2747569_0 Histidine kinase K14980 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 6.38e-201 641.0
DYD3_k127_2747569_1 Ring hydroxylating alpha subunit (catalytic domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005709 493.0
DYD3_k127_2747569_2 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 435.0
DYD3_k127_2747569_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K14981 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 382.0
DYD3_k127_2747569_4 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.0000000000000000000000000000000000000000000000000000000004705 205.0
DYD3_k127_2747569_5 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000373 177.0
DYD3_k127_2747569_6 COG1925 Phosphotransferase system, HPr-related proteins K11189 - - 0.00003134 48.0
DYD3_k127_2786124_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 2.346e-233 752.0
DYD3_k127_2786124_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K15373,K16066 - 1.1.1.313,1.1.1.381 0.0000000000000000000000000000000000000000000000000000000000000159 224.0
DYD3_k127_2786124_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000025 203.0
DYD3_k127_2786124_3 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000019 194.0
DYD3_k127_2786124_4 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.00000000000000000000000000000000000000000000003728 178.0
DYD3_k127_2786124_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000899 174.0
DYD3_k127_2786124_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000001756 171.0
DYD3_k127_2786124_7 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000005893 145.0
DYD3_k127_2786124_8 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000006613 128.0
DYD3_k127_2819858_0 Trimethylamine methyltransferase (MTTB) - - - 1.632e-224 704.0
DYD3_k127_2819858_1 PFAM chemotaxis sensory transducer K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 430.0
DYD3_k127_2835257_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0 1680.0
DYD3_k127_2835257_1 Oligopeptidase F K08602 - - 1.634e-286 889.0
DYD3_k127_2835257_10 Uncharacterised protein family (UPF0262) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001232 247.0
DYD3_k127_2835257_11 Pentapeptide repeats (9 copies) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001663 249.0
DYD3_k127_2835257_12 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000000000000000000000005036 233.0
DYD3_k127_2835257_13 Pentapeptide repeats (9 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000000009278 244.0
DYD3_k127_2835257_15 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.00000000000000000000000003528 115.0
DYD3_k127_2835257_16 - - - - 0.000003411 54.0
DYD3_k127_2835257_2 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.994e-250 786.0
DYD3_k127_2835257_3 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 2.847e-233 736.0
DYD3_k127_2835257_4 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 6.747e-197 621.0
DYD3_k127_2835257_5 ABC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 590.0
DYD3_k127_2835257_6 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005846 587.0
DYD3_k127_2835257_7 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 339.0
DYD3_k127_2835257_8 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 338.0
DYD3_k127_2835257_9 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 284.0
DYD3_k127_2877997_0 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000006475 150.0
DYD3_k127_2877997_1 TadE-like protein - - - 0.000000000000000000556 96.0
DYD3_k127_2877997_3 PFAM TadE family protein - - - 0.0009913 49.0
DYD3_k127_2929370_0 This protein is involved in the repair of mismatches in DNA K03555 - - 0.0 1204.0
DYD3_k127_2929370_1 malic enzyme K00029 - 1.1.1.40 0.0 1094.0
DYD3_k127_2929370_10 Tetrapyrrole (Corrin/Porphyrin) Methylases K05936 - 2.1.1.133,2.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 392.0
DYD3_k127_2929370_11 Precorrin-2 K03394 - 2.1.1.130,2.1.1.151 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 341.0
DYD3_k127_2929370_12 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 316.0
DYD3_k127_2929370_13 PFAM Precorrin-6x reductase CbiJ CobK K05895 - 1.3.1.106,1.3.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000007111 265.0
DYD3_k127_2929370_14 Precorrin-8X methylmutase K06042 - 5.4.99.60,5.4.99.61 0.00000000000000000000000000000000000000000000000000000000000000000000000003225 256.0
DYD3_k127_2929370_15 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002024 251.0
DYD3_k127_2929370_16 - - - - 0.0000000000000000000000000000000000000000000000002473 182.0
DYD3_k127_2929370_17 COG2010 Cytochrome c, mono- and diheme variants - - - 0.00000000000000000000000000000000000000001254 160.0
DYD3_k127_2929370_18 Uncharacterized protein family UPF0016 - - - 0.0000000000000000000000003039 109.0
DYD3_k127_2929370_2 precorrin-3b K05934,K13541 - 2.1.1.131,3.7.1.12 1.889e-232 734.0
DYD3_k127_2929370_3 CbiX K03795 - 4.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004234 566.0
DYD3_k127_2929370_4 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007381 528.0
DYD3_k127_2929370_5 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006754 493.0
DYD3_k127_2929370_6 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009625 487.0
DYD3_k127_2929370_7 Precorrin-6Y C5,15-methyltransferase (Decarboxylating), CbiT subunit K00595 - 2.1.1.132 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009529 483.0
DYD3_k127_2929370_8 Belongs to the precorrin methyltransferase family K02303 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009987 407.0
DYD3_k127_2929370_9 signal transduction histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 406.0
DYD3_k127_2957529_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.491e-218 683.0
DYD3_k127_2957529_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000000000000000000000000001091 181.0
DYD3_k127_2957529_2 Transcriptional regulator K01356 - 3.4.21.88 0.0000000000000000000000000000005169 130.0
DYD3_k127_2957529_3 methyltransferase K16048 - - 0.000001486 59.0
DYD3_k127_2958816_0 CHASE2 K01768 - 4.6.1.1 5.903e-233 742.0
DYD3_k127_2958816_1 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000007145 196.0
DYD3_k127_2958816_2 - - - - 0.000000000000000000000000000000000000001957 160.0
DYD3_k127_2958816_3 Creatinase/Prolidase N-terminal domain - - - 0.000000000000000000000000000000000000004015 147.0
DYD3_k127_2958816_4 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.000000000000000000000000000000000006296 138.0
DYD3_k127_2958816_5 membrane - - - 0.000000000000000000000000000000000508 134.0
DYD3_k127_2958816_6 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.000002064 51.0
DYD3_k127_2958816_7 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00007506 50.0
DYD3_k127_297305_0 Putative transposase of IS4/5 family (DUF4096) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 444.0
DYD3_k127_297305_1 Peptidoglycan-binding domain 1 protein - - - 0.0000000000000000000000000000000006751 135.0
DYD3_k127_2986899_0 COG3328 Transposase and inactivated derivatives - - - 2.834e-229 715.0
DYD3_k127_2986899_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000886 227.0
DYD3_k127_2986899_2 Protein of unknown function (DUF1778) - - - 0.0000000000000000000000005491 108.0
DYD3_k127_2986899_4 - - - - 0.000000000000005495 87.0
DYD3_k127_3018539_0 glutamate--cysteine ligase K01919 - 6.3.2.2 1.855e-209 662.0
DYD3_k127_3018539_1 acyl-CoA transferases carnitine dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006858 510.0
DYD3_k127_3018539_2 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 327.0
DYD3_k127_3018539_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 303.0
DYD3_k127_3018539_4 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000013 142.0
DYD3_k127_3018539_5 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000001 136.0
DYD3_k127_3034023_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 3.502e-266 827.0
DYD3_k127_3034023_1 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 5.152e-250 796.0
DYD3_k127_3034023_2 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004565 417.0
DYD3_k127_3034023_3 Amino-transferase class IV K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000957 364.0
DYD3_k127_3034023_4 Peptidase S24-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 295.0
DYD3_k127_3034023_5 'TIGRFAM RNA polymerase sigma factor, sigma-70 family' K03088 - - 0.00000000000000000000000000000000000000000000000000001645 195.0
DYD3_k127_3034023_6 Protein of unknown function (DUF952) - - - 0.00000000000000000000000000000000000000003106 154.0
DYD3_k127_3034023_7 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.000000000000002748 76.0
DYD3_k127_3034023_8 HELICc2 K03722 - 3.6.4.12 0.0000000000002841 74.0
DYD3_k127_3039288_0 Catalyzes the synthesis of activated sulfate K00955 - 2.7.1.25,2.7.7.4 6.568e-266 831.0
DYD3_k127_3039288_1 Phosphoadenosine phosphosulfate reductase family K00957 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008558 434.0
DYD3_k127_3039288_2 PFAM AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005315 389.0
DYD3_k127_3039288_3 reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 299.0
DYD3_k127_3039288_4 Acetyltransferase (Isoleucine patch superfamily) - - - 0.000000000000000000000000000000000000000000000006727 179.0
DYD3_k127_3039288_5 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000003152 170.0
DYD3_k127_3039288_6 PKD domain - - - 0.000000000000000000000000000000008413 149.0
DYD3_k127_3039288_7 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000004187 127.0
DYD3_k127_3039288_8 domain, Protein - - - 0.00000000000001241 89.0
DYD3_k127_3039288_9 - - - - 0.000000000007807 69.0
DYD3_k127_3042762_0 Domain of unknown function (DUF4175) - - - 8.819e-215 696.0
DYD3_k127_3042762_1 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.000000000000000000000000000000000000000000000000000000000000004501 231.0
DYD3_k127_3042762_2 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000004706 169.0
DYD3_k127_3042762_3 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.00000000000000005013 81.0
DYD3_k127_3059842_0 Sulfatase K01133 - 3.1.6.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 586.0
DYD3_k127_3059842_1 taurine catabolism dioxygenase K03119 - 1.14.11.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009709 413.0
DYD3_k127_3059842_2 PFAM conserved K02069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 323.0
DYD3_k127_3059842_3 Globin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 321.0
DYD3_k127_3059842_4 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000001368 210.0
DYD3_k127_3059842_5 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000005054 160.0
DYD3_k127_3059842_6 Methyl-accepting chemotaxis protein (MCP) signalling domain - - - 0.00000000000000000007001 103.0
DYD3_k127_3059842_7 Putative zinc-finger - - - 0.000000000131 70.0
DYD3_k127_3066058_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 388.0
DYD3_k127_3079581_0 Terminase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 538.0
DYD3_k127_3079581_1 COG2183 Transcriptional accessory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 492.0
DYD3_k127_3079581_10 - - - - 0.0000000000000000000000000000004274 123.0
DYD3_k127_3079581_11 DDE domain - - - 0.0000000000000000000000000007269 115.0
DYD3_k127_3079581_12 Dodecin K09165 - - 0.0000000000000000000005813 99.0
DYD3_k127_3079581_13 Exopolysaccharide synthesis, ExoD - - - 0.00000000000000005537 81.0
DYD3_k127_3079581_14 - - - - 0.0000000000006889 74.0
DYD3_k127_3079581_15 Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000005319 68.0
DYD3_k127_3079581_16 - - - - 0.00000000001775 69.0
DYD3_k127_3079581_17 ADP-ribosylglycohydrolase - - - 0.000000005114 58.0
DYD3_k127_3079581_18 PFAM AMP-dependent synthetase and ligase K01897,K03822 - 6.2.1.3 0.00001617 50.0
DYD3_k127_3079581_2 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 486.0
DYD3_k127_3079581_3 metalloprotease K07054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 449.0
DYD3_k127_3079581_4 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005158 302.0
DYD3_k127_3079581_5 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000002629 257.0
DYD3_k127_3079581_6 COG2183 Transcriptional accessory protein - - - 0.00000000000000000000000000000000000000000000003309 173.0
DYD3_k127_3079581_7 Transposase - - - 0.000000000000000000000000000000000000000002609 158.0
DYD3_k127_3079581_8 PFAM transposase IS116 IS110 IS902 family - - - 0.0000000000000000000000000000000000103 138.0
DYD3_k127_3079581_9 Exopolysaccharide synthesis, ExoD - - - 0.0000000000000000000000000000000368 129.0
DYD3_k127_3109800_0 Adenylate cyclase - - - 5.166e-229 725.0
DYD3_k127_3109800_1 Serine aminopeptidase, S33 K06889 - - 0.0000000000000000000000000000000000000000000000000000000002495 210.0
DYD3_k127_313428_0 protocatechuate 3,4-dioxygenase activity K03381 - 1.13.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 381.0
DYD3_k127_313428_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008218 273.0
DYD3_k127_313428_2 Domain of unknown function (DUF4864) - - - 0.00000000000000000000000000000000003353 139.0
DYD3_k127_313428_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000991 118.0
DYD3_k127_313428_5 Integrase core domain - - - 0.0000000005126 59.0
DYD3_k127_3168365_0 Saccharopine dehydrogenase C-terminal domain K00808 - 2.5.1.44 2.172e-240 751.0
DYD3_k127_3168365_1 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 590.0
DYD3_k127_3168365_2 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002823 548.0
DYD3_k127_3168365_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 470.0
DYD3_k127_3168365_4 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000001144 169.0
DYD3_k127_3168365_5 MlaC protein K07323 - - 0.0000000000000000000000000000000000000000007456 166.0
DYD3_k127_3168365_6 COG0607 Rhodanese-related sulfurtransferase - - - 0.0000000000000002815 78.0
DYD3_k127_3168365_7 NmrA-like family K00091 - 1.1.1.219 0.00000000000001209 77.0
DYD3_k127_3168365_8 surface antigen - - - 0.0002558 52.0
DYD3_k127_3168776_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.979e-240 751.0
DYD3_k127_3168776_1 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007989 392.0
DYD3_k127_3168776_10 - - - - 0.00000000000000001823 88.0
DYD3_k127_3168776_12 acid ABC transporter K09970 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0003393 47.0
DYD3_k127_3168776_2 Two component transcriptional regulator, winged helix family K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 359.0
DYD3_k127_3168776_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 371.0
DYD3_k127_3168776_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 346.0
DYD3_k127_3168776_5 COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K09969 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 325.0
DYD3_k127_3168776_6 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000000002909 270.0
DYD3_k127_3168776_7 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001611 257.0
DYD3_k127_3168776_8 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.00000000000000000000000001964 114.0
DYD3_k127_3168776_9 COG5126 Ca2 -binding protein (EF-Hand superfamily - - - 0.00000000000000000000001583 107.0
DYD3_k127_3175307_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 338.0
DYD3_k127_3175307_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000001671 215.0
DYD3_k127_3175307_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000006972 121.0
DYD3_k127_3175307_3 Protein of unknown function (DUF3365) - - - 0.0000000000000000000003252 98.0
DYD3_k127_3199637_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 343.0
DYD3_k127_3199637_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 292.0
DYD3_k127_3199637_2 protein containing LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000005821 240.0
DYD3_k127_3199637_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.8.8 0.00000000000000000000000000000000000000000009262 162.0
DYD3_k127_3199637_4 Cytochrome C' - - - 0.0000000000001692 72.0
DYD3_k127_3210359_0 Winged helix-turn helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003838 470.0
DYD3_k127_3210359_1 Histidine kinase K07675 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 318.0
DYD3_k127_3210359_2 phenylacetate-CoA ligase activity - - - 0.000000000000000000000000000000008874 138.0
DYD3_k127_3210359_3 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000001475 130.0
DYD3_k127_3235808_0 GTP-binding protein TypA K06207 - - 2.211e-287 895.0
DYD3_k127_3235808_1 PFAM Binding-protein-dependent transport system inner membrane component K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003898 576.0
DYD3_k127_3235808_10 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009171 335.0
DYD3_k127_3235808_11 Binding-protein-dependent transport system inner membrane component K02029,K10020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 323.0
DYD3_k127_3235808_12 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 321.0
DYD3_k127_3235808_13 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003954 290.0
DYD3_k127_3235808_14 auxin-activated signaling pathway K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000009046 243.0
DYD3_k127_3235808_15 Etoposide-induced protein 2.4 (EI24) - - - 0.00000000000000000000000000000000000000000000000000000000000003918 222.0
DYD3_k127_3235808_16 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000002286 206.0
DYD3_k127_3235808_17 Integral membrane protein (DUF2244) - - - 0.00000000000000000000000000000000000000000001071 169.0
DYD3_k127_3235808_18 Polymer-forming cytoskeletal - - - 0.00000000000000000005593 102.0
DYD3_k127_3235808_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 565.0
DYD3_k127_3235808_20 probably involved in intracellular septation K06190 - - 0.0000000000001179 71.0
DYD3_k127_3235808_23 This protein is involved in the repair of mismatches in DNA K03555 - - 0.00027 48.0
DYD3_k127_3235808_3 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006363 509.0
DYD3_k127_3235808_4 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 498.0
DYD3_k127_3235808_5 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 479.0
DYD3_k127_3235808_6 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 438.0
DYD3_k127_3235808_7 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002952 372.0
DYD3_k127_3235808_8 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003245 344.0
DYD3_k127_3235808_9 Binding-protein-dependent transport system inner membrane component K02029,K10019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 340.0
DYD3_k127_3238263_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1279.0
DYD3_k127_3238263_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 5.449e-196 629.0
DYD3_k127_3238263_10 FR47-like protein K03829 - - 0.00000000000000000000000000000002278 135.0
DYD3_k127_3238263_11 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000003435 102.0
DYD3_k127_3238263_2 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006226 545.0
DYD3_k127_3238263_3 COG0471 Di- and tricarboxylate transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 420.0
DYD3_k127_3238263_4 Mate efflux family protein K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 385.0
DYD3_k127_3238263_5 peptidylprolyl isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000002602 237.0
DYD3_k127_3238263_6 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000003557 229.0
DYD3_k127_3238263_7 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.00000000000000000000000000000000000000000000000000000000000000009028 231.0
DYD3_k127_3238263_8 YHS domain - - - 0.0000000000000000000000000000000000000000000000000000125 192.0
DYD3_k127_3238263_9 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000000000000000000000000004221 139.0
DYD3_k127_3261099_0 Belongs to the GcvT family K00315 - 1.5.8.4 0.0 1404.0
DYD3_k127_3261099_1 peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009398 336.0
DYD3_k127_3261099_2 to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004173 322.0
DYD3_k127_3261099_3 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002006 247.0
DYD3_k127_3261099_4 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000006929 231.0
DYD3_k127_3261099_5 Domain of unknown function (DUF4399) - - - 0.0000000000000000000000000000000000000000000000000000000002599 207.0
DYD3_k127_3261099_6 Domain of unknown function (DUF4399) - - - 0.00000000000000000000000000000000000000000000000000000859 191.0
DYD3_k127_3261099_7 Protein kinase domain K08884 - 2.7.11.1 0.00000000000001921 86.0
DYD3_k127_3261099_8 Lysin motif - - - 0.000000005869 68.0
DYD3_k127_3261099_9 SnoaL-like polyketide cyclase - - - 0.0000001174 59.0
DYD3_k127_327222_0 sulfatase K01130 - 3.1.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000882 464.0
DYD3_k127_327222_1 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000001365 211.0
DYD3_k127_3277105_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1454.0
DYD3_k127_3277105_1 Belongs to the UPF0261 family - - - 5.662e-262 828.0
DYD3_k127_3277105_10 Belongs to the proline racemase family - GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0050346 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 563.0
DYD3_k127_3277105_11 AMP-binding enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 563.0
DYD3_k127_3277105_12 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 549.0
DYD3_k127_3277105_13 transport system, fused permease components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 542.0
DYD3_k127_3277105_14 Biotin carboxylase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007468 520.0
DYD3_k127_3277105_15 Dihydrodipicolinate synthetase family K21062 - 3.5.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 511.0
DYD3_k127_3277105_16 BFD-like [2Fe-2S] binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 490.0
DYD3_k127_3277105_17 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 469.0
DYD3_k127_3277105_18 BFD-like [2Fe-2S] binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008859 476.0
DYD3_k127_3277105_19 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 464.0
DYD3_k127_3277105_2 Conserved carboxylase domain - - - 2.572e-238 747.0
DYD3_k127_3277105_20 Phosphoenolpyruvate hydrolase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 452.0
DYD3_k127_3277105_21 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 457.0
DYD3_k127_3277105_22 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 455.0
DYD3_k127_3277105_23 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 447.0
DYD3_k127_3277105_24 Belongs to the proline racemase family K01777,K12658 GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855,GO:0036361,GO:0047580,GO:0047661 5.1.1.4,5.1.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 440.0
DYD3_k127_3277105_25 COG0665 Glycine D-amino acid oxidases (deaminating) K00303 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008844 439.0
DYD3_k127_3277105_26 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 420.0
DYD3_k127_3277105_27 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 417.0
DYD3_k127_3277105_28 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004249 412.0
DYD3_k127_3277105_29 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 406.0
DYD3_k127_3277105_3 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 6.07e-219 694.0
DYD3_k127_3277105_30 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 402.0
DYD3_k127_3277105_31 N-terminal TM domain of oligopeptide transport permease C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 405.0
DYD3_k127_3277105_32 COG0665 Glycine D-amino acid oxidases (deaminating) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 400.0
DYD3_k127_3277105_33 ABC transporter, ATP-binding protein K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 387.0
DYD3_k127_3277105_34 PFAM Prokaryotic protein of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 390.0
DYD3_k127_3277105_35 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 380.0
DYD3_k127_3277105_36 transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 385.0
DYD3_k127_3277105_37 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007677 338.0
DYD3_k127_3277105_38 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 346.0
DYD3_k127_3277105_39 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 305.0
DYD3_k127_3277105_4 COG1012 NAD-dependent aldehyde dehydrogenases K13922,K15515 - 1.2.1.81,1.2.1.87 3.748e-213 670.0
DYD3_k127_3277105_40 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 304.0
DYD3_k127_3277105_41 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 297.0
DYD3_k127_3277105_42 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 286.0
DYD3_k127_3277105_43 Phosphoenolpyruvate hydrolase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008841 294.0
DYD3_k127_3277105_44 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001008 272.0
DYD3_k127_3277105_45 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001267 271.0
DYD3_k127_3277105_46 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008368 244.0
DYD3_k127_3277105_47 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000003227 237.0
DYD3_k127_3277105_48 COG1414 Transcriptional regulator K02624 - - 0.000000000000000000000000000000000000000000000000000000000000000008597 234.0
DYD3_k127_3277105_49 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000006839 232.0
DYD3_k127_3277105_5 Belongs to the mandelate racemase muconate lactonizing enzyme family K21624 GO:0000287,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0016597,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0031406,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046872,GO:0050896,GO:0051716,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:1901564,GO:1901605,GO:1901698,GO:1901699,GO:1901700,GO:1901701 4.2.1.171 2.827e-211 660.0
DYD3_k127_3277105_50 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000000000000000008788 224.0
DYD3_k127_3277105_51 transcriptional regulator, lysr family - - - 0.00000000000000000000000000000000000000000000000000000000002956 218.0
DYD3_k127_3277105_52 Glutathione S-transferase - - - 0.000000000000000000000000000000000000000000000000000005184 198.0
DYD3_k127_3277105_53 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000002501 124.0
DYD3_k127_3277105_54 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA - - - 0.000000000000000000000000000007891 124.0
DYD3_k127_3277105_55 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000005759 123.0
DYD3_k127_3277105_56 Glutathione S-transferase, C-terminal domain K11209 - - 0.000000000000000000000008865 102.0
DYD3_k127_3277105_57 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000001465 104.0
DYD3_k127_3277105_58 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000000000004247 94.0
DYD3_k127_3277105_59 Phosphoenolpyruvate hydrolase-like - - - 0.0000000003905 70.0
DYD3_k127_3277105_6 Tripartite tricarboxylate transporter TctA family - - - 2.888e-204 647.0
DYD3_k127_3277105_60 Resolvase, N terminal domain - - - 0.0000000005415 61.0
DYD3_k127_3277105_61 Belongs to the GST superfamily K11209 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0015036,GO:0016491,GO:0016667,GO:0050896,GO:0055114 - 0.0000017 50.0
DYD3_k127_3277105_7 Amidohydrolase family - - - 2.977e-200 633.0
DYD3_k127_3277105_8 Flotillin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 609.0
DYD3_k127_3277105_9 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 593.0
DYD3_k127_3304694_0 Belongs to the TPP enzyme family K03852 - 2.3.3.15 1.749e-221 694.0
DYD3_k127_3304694_1 helix_turn_helix gluconate operon transcriptional repressor K00375 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 571.0
DYD3_k127_3304694_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 534.0
DYD3_k127_3304694_3 Belongs to the citrate synthase family K01647,K01659 - 2.3.3.1,2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003643 527.0
DYD3_k127_3304694_4 COG0687 Spermidine putrescine-binding periplasmic protein K11069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 471.0
DYD3_k127_3304694_5 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 422.0
DYD3_k127_3304694_6 Binding-protein-dependent transport system inner membrane component K11071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 419.0
DYD3_k127_3304694_7 COG1177 ABC-type spermidine putrescine transport system, permease component II K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006528 398.0
DYD3_k127_3304694_8 phosphate acetyltransferase K00625 - 2.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 368.0
DYD3_k127_3304694_9 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000002186 199.0
DYD3_k127_3333240_0 type I secretion outer membrane protein, TolC K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004919 435.0
DYD3_k127_3333240_1 Outer membrane efflux protein K12340 - - 0.00000152 50.0
DYD3_k127_3382771_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 527.0
DYD3_k127_3382771_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0000000000000000000000000000005176 123.0
DYD3_k127_3531212_0 Asparagine synthase K01953 - 6.3.5.4 2.128e-282 882.0
DYD3_k127_3531212_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 4.478e-201 631.0
DYD3_k127_3531212_10 Male sterility protein K00091,K01784 - 1.1.1.219,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000006713 270.0
DYD3_k127_3531212_11 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000001327 186.0
DYD3_k127_3531212_12 O-antigen ligase like membrane protein - - - 0.00000000000000000000000000000003244 141.0
DYD3_k127_3531212_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003451 582.0
DYD3_k127_3531212_3 Required for the activity of the bacterial periplasmic transport system of putrescine K11069,K11073 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 535.0
DYD3_k127_3531212_4 3-beta hydroxysteroid dehydrogenase/isomerase family K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 467.0
DYD3_k127_3531212_5 Putrescine transport system permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 458.0
DYD3_k127_3531212_6 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007412 432.0
DYD3_k127_3531212_7 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 430.0
DYD3_k127_3531212_8 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003984 401.0
DYD3_k127_3531212_9 Binding-protein-dependent transport system inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 401.0
DYD3_k127_3537488_0 Phage portal protein, HK97 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 427.0
DYD3_k127_3537488_1 phage phi-C31 gp36 major capsid-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007875 376.0
DYD3_k127_3537488_2 Caudovirus prohead serine protease K06904 - - 0.00000000000000000000000000000000000000000000001505 187.0
DYD3_k127_3537488_3 Protein of unknown function (DUF3168) - - - 0.00000000000000000000000000006824 121.0
DYD3_k127_3537488_4 - - - - 0.00000000000000000000000003338 117.0
DYD3_k127_3537488_5 head-tail adaptor - - - 0.000000000000000000002569 101.0
DYD3_k127_3537488_6 - - - - 0.00000001204 62.0
DYD3_k127_3537488_7 - - - - 0.000008122 57.0
DYD3_k127_3537488_8 - - - - 0.00001405 51.0
DYD3_k127_3537488_9 - - - - 0.00003535 51.0
DYD3_k127_3568270_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1265.0
DYD3_k127_3568270_1 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1177.0
DYD3_k127_3568270_10 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 600.0
DYD3_k127_3568270_11 Belongs to the DEAD box helicase family K03732,K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 572.0
DYD3_k127_3568270_12 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005421 567.0
DYD3_k127_3568270_13 PFAM monooxygenase FAD-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 550.0
DYD3_k127_3568270_14 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 553.0
DYD3_k127_3568270_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 544.0
DYD3_k127_3568270_16 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 514.0
DYD3_k127_3568270_17 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 438.0
DYD3_k127_3568270_18 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 435.0
DYD3_k127_3568270_19 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 426.0
DYD3_k127_3568270_2 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1046.0
DYD3_k127_3568270_20 ABC transporter K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006764 397.0
DYD3_k127_3568270_21 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 400.0
DYD3_k127_3568270_22 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004029 382.0
DYD3_k127_3568270_23 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 371.0
DYD3_k127_3568270_24 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005779 355.0
DYD3_k127_3568270_25 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 355.0
DYD3_k127_3568270_26 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 331.0
DYD3_k127_3568270_27 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 320.0
DYD3_k127_3568270_28 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006483 317.0
DYD3_k127_3568270_29 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 321.0
DYD3_k127_3568270_3 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 2.61e-300 932.0
DYD3_k127_3568270_30 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 312.0
DYD3_k127_3568270_31 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009596 301.0
DYD3_k127_3568270_32 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 304.0
DYD3_k127_3568270_33 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006586 274.0
DYD3_k127_3568270_34 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005237 269.0
DYD3_k127_3568270_35 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001129 265.0
DYD3_k127_3568270_36 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000001897 228.0
DYD3_k127_3568270_37 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000002921 213.0
DYD3_k127_3568270_38 Belongs to the P(II) protein family K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.000000000000000000000000000000000000000000000000000000000001329 210.0
DYD3_k127_3568270_39 Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - - 0.0000000000000000000000000000000000000000000000000007807 192.0
DYD3_k127_3568270_4 Uncharacterized protein family (UPF0051) K09014 - - 3.276e-279 862.0
DYD3_k127_3568270_40 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000002178 187.0
DYD3_k127_3568270_41 COG1607 Acyl-CoA hydrolase K10806 - - 0.00000000000000000000000000000000000000000000000007187 181.0
DYD3_k127_3568270_42 Cytochrome P460 - - - 0.0000000000000000000000000000000000000000000000001008 186.0
DYD3_k127_3568270_43 Cytochrome c K08738 - - 0.000000000000000000000000000000000000000000000006482 179.0
DYD3_k127_3568270_44 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000000000000000001242 169.0
DYD3_k127_3568270_45 Cytochrome P460 - - - 0.000000000000000000000000000000000000000000007223 176.0
DYD3_k127_3568270_46 COG0790 FOG TPR repeat, SEL1 subfamily K07126,K13582 - - 0.0000000000000000000000000000000000000000000274 180.0
DYD3_k127_3568270_47 FecR protein - - - 0.0000000000000000000000000000000000000000008889 182.0
DYD3_k127_3568270_48 COG1335 Amidases related to nicotinamidase - - - 0.0000000000000000000000000000000000000000347 158.0
DYD3_k127_3568270_49 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000000001247 148.0
DYD3_k127_3568270_5 glutamine synthetase K01915 - 6.3.1.2 3.638e-256 794.0
DYD3_k127_3568270_50 Sigma-70, region 4 - - - 0.000000000000000000000000000000000000005116 157.0
DYD3_k127_3568270_51 - - - - 0.000000000000000000000000000000000007913 140.0
DYD3_k127_3568270_52 COG1522 Transcriptional regulators - - - 0.000000000000000000000000000000000008527 138.0
DYD3_k127_3568270_53 - - - - 0.0000000000000000000000001641 111.0
DYD3_k127_3568270_54 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000002854 114.0
DYD3_k127_3568270_55 AntiSigma factor - - - 0.0000000000000000007254 98.0
DYD3_k127_3568270_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 5.737e-243 754.0
DYD3_k127_3568270_60 PFAM Resolvase, N-terminal - - - 0.00003138 53.0
DYD3_k127_3568270_61 - - - - 0.0003521 45.0
DYD3_k127_3568270_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 1.173e-231 722.0
DYD3_k127_3568270_8 Mo-co oxidoreductase dimerisation domain - - - 6.478e-212 665.0
DYD3_k127_3568270_9 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 607.0
DYD3_k127_357777_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 492.0
DYD3_k127_357777_1 AAA domain (dynein-related subfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008328 466.0
DYD3_k127_357777_2 VWA domain containing CoxE-like protein K07161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005248 403.0
DYD3_k127_357777_3 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 334.0
DYD3_k127_357777_4 Dicarboxylate transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000214 269.0
DYD3_k127_357777_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07032 - - 0.00000000000000000000000000000000000000000000000000004615 191.0
DYD3_k127_357777_6 Protein of unknown function (DUF1318) - - - 0.000000000000000000000000000003706 123.0
DYD3_k127_357777_7 YnbE-like lipoprotein - - - 0.000000000000004228 81.0
DYD3_k127_3578336_0 DNA methylase K03427 - 2.1.1.72 3.107e-250 781.0
DYD3_k127_3578336_1 Beta-lactamase domain protein K06897 - 2.5.1.105 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 509.0
DYD3_k127_3578336_2 DGC domain - - - 0.0000000000000000000000000000000000000000000000007322 181.0
DYD3_k127_3578336_3 peroxiredoxin activity K01607 - 4.1.1.44 0.00000000000000000007125 91.0
DYD3_k127_3578336_4 - - - - 0.000000000000002233 80.0
DYD3_k127_3607825_0 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.0 1028.0
DYD3_k127_3607825_1 ABC-type dipeptide transport system, periplasmic component K02035 - - 2.311e-262 818.0
DYD3_k127_3607825_10 Binding-protein-dependent transport system inner membrane component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009373 376.0
DYD3_k127_3607825_11 Binding-protein-dependent transport system inner membrane component K02042 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 364.0
DYD3_k127_3607825_12 Phosphonate ABC transporter K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000501 361.0
DYD3_k127_3607825_13 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 340.0
DYD3_k127_3607825_14 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 325.0
DYD3_k127_3607825_15 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008687 313.0
DYD3_k127_3607825_16 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000003501 244.0
DYD3_k127_3607825_17 polysaccharide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000001009 213.0
DYD3_k127_3607825_18 serine-type endopeptidase activity K04772,K08372 - - 0.0000000000000000000000003637 115.0
DYD3_k127_3607825_2 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 557.0
DYD3_k127_3607825_21 Protein of unknown function (DUF1344) - - - 0.000002282 55.0
DYD3_k127_3607825_3 OsmC-like protein K06889,K07397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 514.0
DYD3_k127_3607825_4 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 461.0
DYD3_k127_3607825_5 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 427.0
DYD3_k127_3607825_6 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 417.0
DYD3_k127_3607825_7 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005033 406.0
DYD3_k127_3607825_8 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 381.0
DYD3_k127_3607825_9 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 379.0
DYD3_k127_3633794_0 Toxic component of a toxin-antitoxin (TA) module. An RNase K07062 - - 0.0000000000000000000002443 98.0
DYD3_k127_3633794_1 Bacterial antitoxin of type II TA system, VapB - - - 0.00000000000000003301 86.0
DYD3_k127_3633794_2 - - - - 0.000008721 57.0
DYD3_k127_3636078_0 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 494.0
DYD3_k127_3636078_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 321.0
DYD3_k127_3636078_2 Domain of unknown function (DUF4445) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004299 258.0
DYD3_k127_3636078_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000002369 257.0
DYD3_k127_3636078_4 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002705 250.0
DYD3_k127_3636078_5 transduction histidine kinase K07716 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000005158 246.0
DYD3_k127_3678116_0 Conserved region in glutamate synthase K22083 - 2.1.1.21 2.562e-269 831.0
DYD3_k127_3678116_1 glutamine synthetase K01915 - 6.3.1.2 7.03e-268 830.0
DYD3_k127_3678116_10 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 577.0
DYD3_k127_3678116_11 Domain of unknown function (DUF3463) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 558.0
DYD3_k127_3678116_12 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 552.0
DYD3_k127_3678116_13 Arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 537.0
DYD3_k127_3678116_14 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 537.0
DYD3_k127_3678116_15 Spermidine putrescine-binding periplasmic protein K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 534.0
DYD3_k127_3678116_16 Binding-protein-dependent transport system inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009708 505.0
DYD3_k127_3678116_17 Fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004619 489.0
DYD3_k127_3678116_18 Bacterial regulatory protein, Fis family K10912 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 471.0
DYD3_k127_3678116_19 Creatinase/Prolidase N-terminal domain K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 467.0
DYD3_k127_3678116_2 Squalene-hopene cyclase C-terminal domain K06045 - 4.2.1.129,5.4.99.17 2.891e-267 839.0
DYD3_k127_3678116_20 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 460.0
DYD3_k127_3678116_21 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006477 443.0
DYD3_k127_3678116_22 -glutamine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 439.0
DYD3_k127_3678116_23 NmrA-like family K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 435.0
DYD3_k127_3678116_24 COG0070 Glutamate synthase domain 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007641 425.0
DYD3_k127_3678116_25 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007058 425.0
DYD3_k127_3678116_26 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 411.0
DYD3_k127_3678116_27 Belongs to the mandelate racemase muconate lactonizing enzyme family K01856 - 5.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008862 408.0
DYD3_k127_3678116_28 Diaminopropionate ammonia-lyase K01751 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008838,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016829,GO:0016840,GO:0016841,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575 4.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 391.0
DYD3_k127_3678116_29 glutamine amidotransferase K22081 - 2.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004722 374.0
DYD3_k127_3678116_3 Methyltransferase K14083 - 2.1.1.250 4.754e-260 809.0
DYD3_k127_3678116_30 racemase activity, acting on amino acids and derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 364.0
DYD3_k127_3678116_31 PFAM Glycosyl transferase family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 364.0
DYD3_k127_3678116_32 Squalene/phytoene synthase K21678,K21679 - 2.5.1.103,4.2.3.156 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 307.0
DYD3_k127_3678116_33 Cro/C1-type HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 299.0
DYD3_k127_3678116_34 Carbon-nitrogen hydrolase K11206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 299.0
DYD3_k127_3678116_35 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 289.0
DYD3_k127_3678116_36 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 294.0
DYD3_k127_3678116_37 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001752 278.0
DYD3_k127_3678116_38 Phytoene synthase K21678 - 2.5.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000001222 269.0
DYD3_k127_3678116_39 transport system, small permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001486 260.0
DYD3_k127_3678116_4 Ammonium Transporter Family - - - 1.017e-245 763.0
DYD3_k127_3678116_40 Cytochrome P460 K08738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001843 256.0
DYD3_k127_3678116_41 Metal dependent phosphohydrolases with conserved 'HD' motif. K06952 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006797 246.0
DYD3_k127_3678116_42 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006469 238.0
DYD3_k127_3678116_43 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000004876 236.0
DYD3_k127_3678116_44 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000002096 199.0
DYD3_k127_3678116_45 GntR family K13637 - - 0.0000000000000000000000000000000000000000000000000000003055 203.0
DYD3_k127_3678116_46 - - - - 0.00000000000000000000000000000000000000000000000000002005 194.0
DYD3_k127_3678116_47 GXGXG motif K22082 - 2.1.1.21 0.000000000000000000000000000000000000000007452 166.0
DYD3_k127_3678116_48 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000005915 163.0
DYD3_k127_3678116_49 Phosphorylase superfamily K01243 - 3.2.2.9 0.000000000000000000000000000000003979 147.0
DYD3_k127_3678116_5 Belongs to the TPP enzyme family K01652 - 2.2.1.6 2.939e-242 762.0
DYD3_k127_3678116_50 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000001395 105.0
DYD3_k127_3678116_51 MlaC protein K07323 - - 0.0000000000000000000001754 107.0
DYD3_k127_3678116_52 - - - - 0.000000000000000004262 85.0
DYD3_k127_3678116_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.064e-224 701.0
DYD3_k127_3678116_7 Glutamine synthetase, catalytic domain K01949 - 6.3.4.12 1.561e-223 699.0
DYD3_k127_3678116_8 FAD dependent oxidoreductase - - - 1.598e-207 653.0
DYD3_k127_3678116_9 transport system, periplasmic component K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 609.0
DYD3_k127_369288_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1282.0
DYD3_k127_369288_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000000000000000000006071 223.0
DYD3_k127_369288_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000002537 218.0
DYD3_k127_369288_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000001353 168.0
DYD3_k127_369288_4 Histidine kinase K07716 - 2.7.13.3 0.000002203 59.0
DYD3_k127_3728227_0 Proton-conducting membrane transporter - - - 1.166e-320 994.0
DYD3_k127_3728227_1 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 1.419e-210 670.0
DYD3_k127_3728227_2 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 479.0
DYD3_k127_3728227_3 COG4237 Hydrogenase 4 membrane component (E) K12140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005732 352.0
DYD3_k127_3728227_4 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000001427 132.0
DYD3_k127_3728453_0 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 485.0
DYD3_k127_3728453_1 Peptidase family M28 K02083 - 3.5.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 454.0
DYD3_k127_3728453_2 Oligopeptide/dipeptide transporter, C-terminal region K12371 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 438.0
DYD3_k127_3728453_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007662 418.0
DYD3_k127_3728453_4 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 418.0
DYD3_k127_3728453_5 - - - - 0.000000000000000000000000000000000000000000000000000000006468 210.0
DYD3_k127_3728453_6 DDE domain K07498 - - 0.00000000000000000000000000000000000007198 146.0
DYD3_k127_3735047_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K03520 - 1.2.5.3 0.0 1114.0
DYD3_k127_3735047_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 569.0
DYD3_k127_3735047_10 ABC transporter K15600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006023 265.0
DYD3_k127_3735047_11 Carbon monoxide dehydrogenase subunit G K09386 - - 0.000000000000000000000000000000000000000000000000000000000000001101 227.0
DYD3_k127_3735047_12 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000000000744 164.0
DYD3_k127_3735047_13 - - - - 0.0000000000000000000000001154 109.0
DYD3_k127_3735047_14 - - - - 0.000000000000000004304 91.0
DYD3_k127_3735047_2 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein K04768 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 533.0
DYD3_k127_3735047_3 Branched-chain amino acid transport system permease K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 473.0
DYD3_k127_3735047_4 amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 419.0
DYD3_k127_3735047_5 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 377.0
DYD3_k127_3735047_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 361.0
DYD3_k127_3735047_7 COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component K15599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 340.0
DYD3_k127_3735047_8 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 302.0
DYD3_k127_3735047_9 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006289 267.0
DYD3_k127_37496_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 2422.0
DYD3_k127_37496_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1025.0
DYD3_k127_37496_10 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 389.0
DYD3_k127_37496_11 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 345.0
DYD3_k127_37496_12 hydrolases or acyltransferases (alpha beta hydrolase superfamily) K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 316.0
DYD3_k127_37496_13 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008628 303.0
DYD3_k127_37496_14 3-5 exonuclease K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 293.0
DYD3_k127_37496_15 Protein conserved in bacteria K09774 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 296.0
DYD3_k127_37496_16 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004164 271.0
DYD3_k127_37496_17 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000024 259.0
DYD3_k127_37496_18 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003128 243.0
DYD3_k127_37496_19 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000001508 235.0
DYD3_k127_37496_2 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 1.716e-240 752.0
DYD3_k127_37496_20 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.000000000000000000000000000000000000000000000000000000004129 207.0
DYD3_k127_37496_21 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000000000000000007682 199.0
DYD3_k127_37496_22 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000004936 196.0
DYD3_k127_37496_23 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000001125 188.0
DYD3_k127_37496_24 - - - - 0.0000000000000000000000000000000000000000000667 168.0
DYD3_k127_37496_25 - - - - 0.00000000000000000008967 96.0
DYD3_k127_37496_26 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000001425 88.0
DYD3_k127_37496_27 Protein of unknown function (DUF1150) - - - 0.0000007855 53.0
DYD3_k127_37496_3 Peptidase dimerisation domain K01438 - 3.5.1.16 1.269e-220 690.0
DYD3_k127_37496_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 600.0
DYD3_k127_37496_5 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 576.0
DYD3_k127_37496_6 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003657 445.0
DYD3_k127_37496_7 ABC transporter, ATP-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 423.0
DYD3_k127_37496_8 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 426.0
DYD3_k127_37496_9 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 396.0
DYD3_k127_3758967_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18989 - - 0.0 1359.0
DYD3_k127_3758967_1 COG0076 Glutamate decarboxylase and related PLP-dependent proteins K01634 - 4.1.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 525.0
DYD3_k127_3758967_10 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000002618 78.0
DYD3_k127_3758967_2 acid transport system permease K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004097 346.0
DYD3_k127_3758967_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008974 314.0
DYD3_k127_3758967_4 ABC-type amino acid transport system permease component K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009964 317.0
DYD3_k127_3758967_5 Nitroreductase family K04719 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016491,GO:0016705,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.13.11.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005677 283.0
DYD3_k127_3758967_6 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000004643 224.0
DYD3_k127_3758967_7 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000000000000000000000000236 207.0
DYD3_k127_3758967_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.8.8 0.00000000000000000000000000000000000000000000000002513 183.0
DYD3_k127_3758967_9 GntR family transcriptional regulator - - - 0.00000000000000000000000000000003394 138.0
DYD3_k127_3781251_0 FAD linked oxidases, C-terminal domain K18930 - - 0.0 1338.0
DYD3_k127_3781251_1 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01965 - 6.4.1.3 2.54e-282 885.0
DYD3_k127_3781251_10 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005665 364.0
DYD3_k127_3781251_11 Pilus assembly protein K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 352.0
DYD3_k127_3781251_12 Belongs to the GSP D family K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 344.0
DYD3_k127_3781251_13 type II secretion system protein K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 292.0
DYD3_k127_3781251_14 Pilus assembly protein K12510 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009579 282.0
DYD3_k127_3781251_15 Transcriptional regulator, gntR family K11475 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007967 259.0
DYD3_k127_3781251_16 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.00000000000000000000000000000000000000000000000000000000003927 215.0
DYD3_k127_3781251_17 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000005411 182.0
DYD3_k127_3781251_18 - - - - 0.00000000000000000000000000000000000009324 146.0
DYD3_k127_3781251_19 - - - - 0.00000000000000000000000000000003199 131.0
DYD3_k127_3781251_2 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 1.872e-238 739.0
DYD3_k127_3781251_20 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000000000000000000065 114.0
DYD3_k127_3781251_21 peptidase K02278 - 3.4.23.43 0.000000000001312 75.0
DYD3_k127_3781251_22 Flp Fap pilin component K02651 - - 0.000000001218 61.0
DYD3_k127_3781251_23 Pilus biogenesis CpaD protein (pilus_cpaD) K02281 - - 0.00000001886 65.0
DYD3_k127_3781251_3 pilus assembly protein ATPase CpaF K02283 - - 3.177e-217 687.0
DYD3_k127_3781251_4 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 2.577e-200 631.0
DYD3_k127_3781251_5 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 603.0
DYD3_k127_3781251_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006953 580.0
DYD3_k127_3781251_7 Aldo/keto reductase family K05882 - 1.1.1.91 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 466.0
DYD3_k127_3781251_8 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007652 464.0
DYD3_k127_3781251_9 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 382.0
DYD3_k127_3829565_0 COG1840 ABC-type Fe3 transport system, periplasmic component K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 596.0
DYD3_k127_3829565_1 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004461 491.0
DYD3_k127_3829565_10 Thiamine monophosphate synthase - - - 0.0000000000000000000000000000000000000000000000000001838 193.0
DYD3_k127_3829565_11 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000001597 171.0
DYD3_k127_3829565_12 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000001407 106.0
DYD3_k127_3829565_13 ThiS family K03154 - - 0.000000000006159 71.0
DYD3_k127_3829565_2 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 409.0
DYD3_k127_3829565_3 TOBE domain K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004409 407.0
DYD3_k127_3829565_4 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007171 383.0
DYD3_k127_3829565_5 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005418 378.0
DYD3_k127_3829565_6 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 347.0
DYD3_k127_3829565_7 COG1177 ABC-type spermidine putrescine transport system, permease component II K02053 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007997 340.0
DYD3_k127_3829565_8 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000001628 236.0
DYD3_k127_3829565_9 DeoR C terminal sensor domain K02444 - - 0.0000000000000000000000000000000000000000000000000000000000001271 222.0
DYD3_k127_3894715_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1317.0
DYD3_k127_3894715_1 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 7.792e-289 902.0
DYD3_k127_3894715_10 Ferredoxin, 2Fe-2S - - - 0.0000000000000000000000000000000000000000000000000000004856 196.0
DYD3_k127_3894715_11 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.000000000000000000000000000000000000000000000000000002271 199.0
DYD3_k127_3894715_12 Domain of unknown function (DUF3576) - - - 0.0000000000000000000000000000000000000000000000001378 185.0
DYD3_k127_3894715_13 Gram-negative porin K08720 - - 0.0000000000000000000000000000000000000000000000383 184.0
DYD3_k127_3894715_14 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000607 164.0
DYD3_k127_3894715_15 Lipopolysaccharide-assembly K03643 - - 0.00000000000000000000000000000000002642 141.0
DYD3_k127_3894715_16 domain, Protein - - - 0.0000000000000000000000000002434 118.0
DYD3_k127_3894715_2 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 1.293e-275 861.0
DYD3_k127_3894715_3 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 493.0
DYD3_k127_3894715_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 478.0
DYD3_k127_3894715_5 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 362.0
DYD3_k127_3894715_6 Chromosome Partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 355.0
DYD3_k127_3894715_7 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 316.0
DYD3_k127_3894715_8 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 307.0
DYD3_k127_3894715_9 lysine exporter protein (LysE YggA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001649 247.0
DYD3_k127_3908812_0 Sulfite reductase K00381 - 1.8.1.2 7.921e-263 818.0
DYD3_k127_3908812_1 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.433e-257 801.0
DYD3_k127_3908812_10 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 473.0
DYD3_k127_3908812_11 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 305.0
DYD3_k127_3908812_12 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005939 253.0
DYD3_k127_3908812_13 COG2207 AraC-type DNA-binding domain-containing proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000509 237.0
DYD3_k127_3908812_14 endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000000000000000003235 208.0
DYD3_k127_3908812_15 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000007103 169.0
DYD3_k127_3908812_16 Glycosyltransferase family 87 - - - 0.0000000000000000000000000000000000000000003156 173.0
DYD3_k127_3908812_17 Bacterial protein of unknown function (DUF934) - - - 0.00000000000000000000000000000000002395 145.0
DYD3_k127_3908812_18 Protein of unknown function (DUF2849) - - - 0.0000000000000000000001036 102.0
DYD3_k127_3908812_19 cheY-homologous receiver domain - - - 0.0000000000000000000002264 102.0
DYD3_k127_3908812_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 5.814e-248 776.0
DYD3_k127_3908812_20 LysE type translocator - - - 0.000000000000000003679 86.0
DYD3_k127_3908812_3 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 6.931e-238 741.0
DYD3_k127_3908812_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 6.399e-202 646.0
DYD3_k127_3908812_5 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700 1.8.1.7 1.032e-194 618.0
DYD3_k127_3908812_6 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 605.0
DYD3_k127_3908812_7 Domain of unknown function DUF87 K06915 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 595.0
DYD3_k127_3908812_8 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 535.0
DYD3_k127_3908812_9 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 507.0
DYD3_k127_3955309_0 type VI secretion protein K11900 - - 2.055e-252 785.0
DYD3_k127_3955309_1 Type VI secretion K11896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 618.0
DYD3_k127_3955309_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 497.0
DYD3_k127_3955309_3 ImcF-related N-terminal domain K11891 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 346.0
DYD3_k127_3955309_4 COG3157 Hemolysin-coregulated protein K11903 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001098 270.0
DYD3_k127_3955309_5 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000181 269.0
DYD3_k127_3955309_6 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.000000000000000000000000000000000000000000000000000000000000004405 220.0
DYD3_k127_3955309_7 protein conserved in bacteria K11895 - - 0.0000000000000000000000000000000000000000000000000000000000007439 224.0
DYD3_k127_3955309_8 Gene 25-like lysozyme K11905 - - 0.00000000000000000000000009828 115.0
DYD3_k127_3963584_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1276.0
DYD3_k127_3963584_1 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 1.037e-252 794.0
DYD3_k127_3963584_10 Binding-protein-dependent transport system inner membrane component K11071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 413.0
DYD3_k127_3963584_11 carbohydrate transport K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 404.0
DYD3_k127_3963584_12 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009965 393.0
DYD3_k127_3963584_13 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 388.0
DYD3_k127_3963584_14 COG2267 Lysophospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 380.0
DYD3_k127_3963584_15 Belongs to the short-chain dehydrogenases reductases (SDR) family K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 315.0
DYD3_k127_3963584_16 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 301.0
DYD3_k127_3963584_17 Cupin 2 conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003087 295.0
DYD3_k127_3963584_18 FCD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007128 265.0
DYD3_k127_3963584_19 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. - - - 0.000000000000000000000000000000000000000000000000000000000000000009125 229.0
DYD3_k127_3963584_2 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 601.0
DYD3_k127_3963584_20 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000000000007301 209.0
DYD3_k127_3963584_21 Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.0000000000000000000000000000000000005693 145.0
DYD3_k127_3963584_22 - - - - 0.000000000000000000000000000004446 122.0
DYD3_k127_3963584_23 Sel1-like repeats. K07126 - - 0.0000000000000000008015 92.0
DYD3_k127_3963584_24 Zinc-finger domain - - - 0.000000000000000006946 86.0
DYD3_k127_3963584_3 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 582.0
DYD3_k127_3963584_4 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744 516.0
DYD3_k127_3963584_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 484.0
DYD3_k127_3963584_6 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006744 478.0
DYD3_k127_3963584_7 COG1131 ABC-type multidrug transport system, ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 458.0
DYD3_k127_3963584_8 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 430.0
DYD3_k127_3963584_9 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 421.0
DYD3_k127_400086_0 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 296.0
DYD3_k127_400086_1 Protein required for attachment to host cells - - - 0.000000000000000000000000002292 122.0
DYD3_k127_400086_2 Transposase and inactivated derivatives - - - 0.000000000002787 71.0
DYD3_k127_4002150_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 467.0
DYD3_k127_4002150_1 COG2771 DNA-binding HTH domain-containing proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 386.0
DYD3_k127_4002150_2 Cell Wall Hydrolase - - - 0.0000000000000000000000000000000000000000000000000004755 194.0
DYD3_k127_4002150_3 Nitrile hydratase beta subunit - - - 0.000000000000000001522 86.0
DYD3_k127_4004035_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1841.0
DYD3_k127_4004035_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1128.0
DYD3_k127_4004035_10 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 534.0
DYD3_k127_4004035_11 Aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 532.0
DYD3_k127_4004035_12 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 535.0
DYD3_k127_4004035_13 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 514.0
DYD3_k127_4004035_14 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007473 480.0
DYD3_k127_4004035_15 LysR substrate binding domain K03566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005005 439.0
DYD3_k127_4004035_16 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 436.0
DYD3_k127_4004035_17 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 439.0
DYD3_k127_4004035_18 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000914 428.0
DYD3_k127_4004035_19 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000818 439.0
DYD3_k127_4004035_2 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.0 1092.0
DYD3_k127_4004035_20 Peptidase M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 429.0
DYD3_k127_4004035_21 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 415.0
DYD3_k127_4004035_22 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 402.0
DYD3_k127_4004035_23 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007194 387.0
DYD3_k127_4004035_24 HupE / UreJ protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 381.0
DYD3_k127_4004035_25 Belongs to the aspartate glutamate racemases family K01779 - 5.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 374.0
DYD3_k127_4004035_26 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 399.0
DYD3_k127_4004035_27 hydrolase of the alpha beta superfamily K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 357.0
DYD3_k127_4004035_28 serine acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 343.0
DYD3_k127_4004035_29 alpha beta - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 351.0
DYD3_k127_4004035_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1021.0
DYD3_k127_4004035_30 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 332.0
DYD3_k127_4004035_31 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 328.0
DYD3_k127_4004035_32 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 292.0
DYD3_k127_4004035_33 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008194 297.0
DYD3_k127_4004035_34 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 - 3.5.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 292.0
DYD3_k127_4004035_35 Universal stress protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002224 265.0
DYD3_k127_4004035_36 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000007437 239.0
DYD3_k127_4004035_37 transcriptional regulator K13643 - - 0.000000000000000000000000000000000000000000000000000000000000000000001072 239.0
DYD3_k127_4004035_38 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002409 242.0
DYD3_k127_4004035_39 Cysteine dioxygenase type I - - - 0.0000000000000000000000000000000000000000000000000000000000000000007031 235.0
DYD3_k127_4004035_4 Aldehyde dehydrogenase family K00128 - 1.2.1.3 1.053e-235 737.0
DYD3_k127_4004035_40 COG0655 Multimeric flavodoxin WrbA - - - 0.00000000000000000000000000000000000000000000000000000000000000003592 231.0
DYD3_k127_4004035_41 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000835 231.0
DYD3_k127_4004035_42 redox protein, regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000000000000000000000000005542 223.0
DYD3_k127_4004035_43 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000001163 220.0
DYD3_k127_4004035_44 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000000000000000000003834 200.0
DYD3_k127_4004035_45 - - - - 0.000000000000000000000000000000000000000000000000000003806 202.0
DYD3_k127_4004035_46 Protein of unknown function (DUF861) K06995 - - 0.00000000000000000000000000000000000000000000000000002234 190.0
DYD3_k127_4004035_47 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000001354 183.0
DYD3_k127_4004035_48 - - - - 0.00000000000000000000000000000000000000000000000004319 184.0
DYD3_k127_4004035_49 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000000000000004133 186.0
DYD3_k127_4004035_5 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 4.945e-226 706.0
DYD3_k127_4004035_50 NADH ubiquinone oxidoreductase 17.2 kD subunit - - - 0.00000000000000000000000000000000000000000000000193 176.0
DYD3_k127_4004035_51 SOS response K14160 - - 0.0000000000000000000000000000000000000000000002419 180.0
DYD3_k127_4004035_52 Bacterial protein of unknown function (DUF882) - - - 0.000000000000000000000000000000000000000000004675 170.0
DYD3_k127_4004035_53 NIPSNAP - - - 0.00000000000000000000000000000000000000000002017 163.0
DYD3_k127_4004035_54 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 GO:0003674,GO:0003824,GO:0003989,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009305,GO:0009987,GO:0016049,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576 - 0.00000000000000000000000000000000000000006768 158.0
DYD3_k127_4004035_55 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000009107 156.0
DYD3_k127_4004035_56 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000007852 150.0
DYD3_k127_4004035_57 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000000000000000000005302 132.0
DYD3_k127_4004035_58 protein conserved in bacteria - - - 0.00000000000000000000000000000002347 138.0
DYD3_k127_4004035_59 Metal-sensitive transcriptional repressor K07807 - - 0.00000000000000000000000000000021 124.0
DYD3_k127_4004035_6 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300,K08301 - 3.1.26.12 4.946e-218 706.0
DYD3_k127_4004035_60 Cupin domain - - - 0.0000000000000000000000000000007363 126.0
DYD3_k127_4004035_61 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000008855 124.0
DYD3_k127_4004035_62 PFAM response regulator receiver - - - 0.000000000000000000000000001342 116.0
DYD3_k127_4004035_63 - - - - 0.0000000000000000173 87.0
DYD3_k127_4004035_64 - - - - 0.00000000000000009552 84.0
DYD3_k127_4004035_65 COG1664 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000582 77.0
DYD3_k127_4004035_66 - - - - 0.0000000001189 67.0
DYD3_k127_4004035_67 Domain of unknown function (DUF1127) - - - 0.000000008316 59.0
DYD3_k127_4004035_68 PAS domain - - - 0.00000002535 62.0
DYD3_k127_4004035_69 Bacterial DNA-binding protein - - - 0.0000002418 63.0
DYD3_k127_4004035_7 Protein of unknown function - - - 2.198e-205 679.0
DYD3_k127_4004035_8 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 2.051e-199 627.0
DYD3_k127_4004035_9 acyl-CoA transferases carnitine dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 549.0
DYD3_k127_4023306_0 ABC transporter transmembrane region - - - 0.0 1381.0
DYD3_k127_4023306_1 PFAM type III effector Hrp-dependent outers K21948 - 2.7.1.217 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 515.0
DYD3_k127_4023306_10 PFAM chemotaxis sensory transducer K03406 - - 0.0001946 54.0
DYD3_k127_4023306_2 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 435.0
DYD3_k127_4023306_3 HpcH/HpaI aldolase/citrate lyase family K02510 - 4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 346.0
DYD3_k127_4023306_4 Aldolase K22130 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0019321,GO:0019323,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0071704,GO:1901575 4.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 319.0
DYD3_k127_4023306_5 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 334.0
DYD3_k127_4023306_6 LysR substrate binding domain - - - 0.000000000000000000000000000000000006507 141.0
DYD3_k127_4023306_7 Regulator - - - 0.00000000000000000000000000000002714 134.0
DYD3_k127_4023306_8 Antibiotic biosynthesis monooxygenase - - - 0.00000000000002041 78.0
DYD3_k127_4032402_0 Efflux pump membrane transporter K03296 - - 0.0 1526.0
DYD3_k127_4032402_1 COG2217 Cation transport ATPase K01533 - 3.6.3.4 6.093e-236 747.0
DYD3_k127_4032402_10 Tfp pilus assembly protein FimV - - - 0.00000000009312 76.0
DYD3_k127_4032402_2 Ornithine cyclodeaminase/mu-crystallin family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007311 538.0
DYD3_k127_4032402_3 Amidohydrolase family K05603 - 3.5.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 543.0
DYD3_k127_4032402_4 imidazolonepropionase activity K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 519.0
DYD3_k127_4032402_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 414.0
DYD3_k127_4032402_6 Fatty acid desaturase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008505 299.0
DYD3_k127_4032402_7 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000002631 219.0
DYD3_k127_4032402_8 Transcriptional - - - 0.00000000000000000000000000000000000000000004011 167.0
DYD3_k127_4032402_9 cytochrome oxidase maturation protein - - - 0.000000000000006053 81.0
DYD3_k127_4052078_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 3.098e-263 826.0
DYD3_k127_4052078_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 392.0
DYD3_k127_4052078_10 Multidrug Resistance protein K11743 - - 0.000000000000212 78.0
DYD3_k127_4052078_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009996 335.0
DYD3_k127_4052078_3 COG0518 GMP synthase - Glutamine amidotransferase domain K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 303.0
DYD3_k127_4052078_4 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008387 299.0
DYD3_k127_4052078_5 PFAM Glycosyl transferase family 2 K20534 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001276 272.0
DYD3_k127_4052078_6 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000002525 233.0
DYD3_k127_4052078_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000001116 134.0
DYD3_k127_4052078_9 Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000896 94.0
DYD3_k127_4062366_0 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 592.0
DYD3_k127_4062366_1 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 527.0
DYD3_k127_4062366_10 nucleic-acid-binding protein containing a Zn-ribbon K07068 - - 0.0000000000000000000000000000000000000000003238 162.0
DYD3_k127_4062366_2 acetyl-coa acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003466 519.0
DYD3_k127_4062366_3 ABC transporter K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 512.0
DYD3_k127_4062366_4 PFAM Binding-protein-dependent transport system inner membrane component K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 473.0
DYD3_k127_4062366_5 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 463.0
DYD3_k127_4062366_6 Nitronate monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 441.0
DYD3_k127_4062366_7 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 420.0
DYD3_k127_4062366_8 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001239 251.0
DYD3_k127_4062366_9 COG1042 Acyl-CoA synthetase (NDP forming) - - - 0.00000000000000000000000000000000000000000000000000000001811 203.0
DYD3_k127_4076028_0 Hydantoinase/oxoprolinase N-terminal region - - - 3.108e-301 938.0
DYD3_k127_4076028_1 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 2.157e-272 846.0
DYD3_k127_4076028_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004858 486.0
DYD3_k127_4076028_3 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002981 229.0
DYD3_k127_4076028_4 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000005212 218.0
DYD3_k127_4142449_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 1.424e-270 839.0
DYD3_k127_4142449_1 Cysteine-rich domain K11473 - - 2.263e-211 664.0
DYD3_k127_4142449_10 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006712 254.0
DYD3_k127_4142449_11 Pfam Sulfatase K01133 - 3.1.6.6 0.00000000000000000000000000000000000000000000000000000000004732 213.0
DYD3_k127_4142449_12 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000006191 170.0
DYD3_k127_4142449_13 - - - - 0.0000000000000000000000000000000000000000001896 162.0
DYD3_k127_4142449_14 CHAP domain - - - 0.000000000000000000000000000000000000000006883 165.0
DYD3_k127_4142449_15 cheY-homologous receiver domain K13589 - - 0.00000000000000000000000000000000000000004613 156.0
DYD3_k127_4142449_16 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000000001564 84.0
DYD3_k127_4142449_2 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 1.829e-208 662.0
DYD3_k127_4142449_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009082 484.0
DYD3_k127_4142449_4 FAD binding domain K11472 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005649 464.0
DYD3_k127_4142449_5 Protein of unknown function (DUF2817) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 437.0
DYD3_k127_4142449_6 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 393.0
DYD3_k127_4142449_7 RNA-directed DNA polymerase K00986 - 2.7.7.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006228 351.0
DYD3_k127_4142449_8 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 302.0
DYD3_k127_4142449_9 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000007418 262.0
DYD3_k127_4236816_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 572.0
DYD3_k127_4236816_1 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 377.0
DYD3_k127_4236816_2 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007835 273.0
DYD3_k127_4236816_3 COG1247 Sortase and related acyltransferases K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000000000000000000002409 231.0
DYD3_k127_4236816_4 response regulator K13589 - - 0.000000000000000000000000000000000000002052 151.0
DYD3_k127_4236816_5 spectrin binding - - - 0.00000001291 61.0
DYD3_k127_4331499_0 Belongs to the GcvT family K00605 - 2.1.2.10 0.0 1148.0
DYD3_k127_4331499_1 ABC-type proline glycine betaine transport system permease component K02001 - - 9.82e-278 868.0
DYD3_k127_4331499_10 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 419.0
DYD3_k127_4331499_11 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 419.0
DYD3_k127_4331499_12 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 349.0
DYD3_k127_4331499_13 D-ala D-ala ligase C-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001009 274.0
DYD3_k127_4331499_14 PFAM ABC transporter K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003054 254.0
DYD3_k127_4331499_15 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000004974 211.0
DYD3_k127_4331499_16 glutamate synthase K22082 - 2.1.1.21 0.00000000000000000000000000000000000000000000000000000000001152 209.0
DYD3_k127_4331499_17 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000001153 155.0
DYD3_k127_4331499_18 - - - - 0.000000000000000166 89.0
DYD3_k127_4331499_2 FAD-NAD(P)-binding K18277 - 1.14.13.148 6.828e-252 781.0
DYD3_k127_4331499_3 FMN-dependent dehydrogenase K00265,K22083 - 1.4.1.13,1.4.1.14,2.1.1.21 1.215e-230 719.0
DYD3_k127_4331499_4 Periplasmic binding protein K01999 - - 3.964e-210 662.0
DYD3_k127_4331499_5 lysine 2,3-aminomutase - - - 1.221e-194 617.0
DYD3_k127_4331499_6 Substrate binding domain of ABC-type glycine betaine transport system K02002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 517.0
DYD3_k127_4331499_7 ABC transporter K02000 - 3.6.3.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 470.0
DYD3_k127_4331499_8 Pyridoxal-phosphate dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 462.0
DYD3_k127_4331499_9 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 452.0
DYD3_k127_4360661_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1628.0
DYD3_k127_4360661_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.678e-277 869.0
DYD3_k127_4360661_10 ABC transporter, ATP-binding protein K02028,K09972,K10004 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004503 415.0
DYD3_k127_4360661_11 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 399.0
DYD3_k127_4360661_12 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002953 388.0
DYD3_k127_4360661_13 Mitochondrial fission ELM1 K07276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006118 351.0
DYD3_k127_4360661_14 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 330.0
DYD3_k127_4360661_15 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005031 324.0
DYD3_k127_4360661_16 ZIP Zinc transporter K07238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008035 271.0
DYD3_k127_4360661_17 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000004152 268.0
DYD3_k127_4360661_18 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001797 250.0
DYD3_k127_4360661_19 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000001388 238.0
DYD3_k127_4360661_2 COG0480 Translation elongation factors (GTPases) K02355 - - 1.329e-271 852.0
DYD3_k127_4360661_20 helix_turn_helix ASNC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000002359 250.0
DYD3_k127_4360661_21 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000006051 190.0
DYD3_k127_4360661_22 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000001165 173.0
DYD3_k127_4360661_23 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.00000000000000000000000000000000000000000000002821 181.0
DYD3_k127_4360661_24 Evidence 4 Homologs of previously reported genes of K09700 - - 0.0000000000000000000000000000000000000001626 152.0
DYD3_k127_4360661_25 GrpB protein - - - 0.0000002703 55.0
DYD3_k127_4360661_3 - - - - 1.289e-270 846.0
DYD3_k127_4360661_4 Belongs to the CarA family K01956 - 6.3.5.5 1.092e-196 621.0
DYD3_k127_4360661_5 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 3.282e-195 630.0
DYD3_k127_4360661_6 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 587.0
DYD3_k127_4360661_7 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 513.0
DYD3_k127_4360661_8 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 503.0
DYD3_k127_4360661_9 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006219 482.0
DYD3_k127_4367695_0 COG0367 Asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 464.0
DYD3_k127_4367695_1 Ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 316.0
DYD3_k127_4367695_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001256 264.0
DYD3_k127_4367695_3 transcriptional regulator - - - 0.00000000000000000000000000000000000000000003209 166.0
DYD3_k127_4367695_4 Periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000001739 139.0
DYD3_k127_4381600_0 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 454.0
DYD3_k127_4381600_1 ATPase with chaperone activity K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005765 380.0
DYD3_k127_4381600_2 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004646 364.0
DYD3_k127_4381600_3 Ureidoglycolate lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008739 358.0
DYD3_k127_4381600_4 - - - - 0.0000000000000000000000000000000000000000004492 160.0
DYD3_k127_4381600_5 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000000000000000000000000176 127.0
DYD3_k127_4381600_6 GGDEF domain - - - 0.0000000000000000007163 101.0
DYD3_k127_4382929_0 Belongs to the peptidase S11 family K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 398.0
DYD3_k127_4382929_1 Flp pilus assembly protein TadG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003477 291.0
DYD3_k127_4382929_2 Flp pilus assembly protein TadG - - - 0.000000000000000000000000000000000002249 146.0
DYD3_k127_4382929_3 TadE-like protein - - - 0.00000000000000000000000009511 115.0
DYD3_k127_4413746_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.241e-275 853.0
DYD3_k127_4413746_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 9.597e-255 794.0
DYD3_k127_4413746_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007521 391.0
DYD3_k127_4413746_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000000000001066 227.0
DYD3_k127_4431240_0 Pyruvate phosphate dikinase K01006 - 2.7.9.1 0.0 1332.0
DYD3_k127_4431240_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0 1050.0
DYD3_k127_4431240_10 Putative phage tail protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 486.0
DYD3_k127_4431240_11 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 445.0
DYD3_k127_4431240_12 Aromatic amino acid lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 412.0
DYD3_k127_4431240_13 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005998 388.0
DYD3_k127_4431240_14 Uncharacterized protein family UPF0016 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009883 385.0
DYD3_k127_4431240_15 Dihydrodipicolinate synthetase family K01714,K21062 - 3.5.4.22,4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 381.0
DYD3_k127_4431240_16 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006231 365.0
DYD3_k127_4431240_17 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 349.0
DYD3_k127_4431240_18 Enoyl-(Acyl carrier protein) reductase K00019,K18335 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 331.0
DYD3_k127_4431240_19 COG0616 periplasmic serine proteases (ClpP class) K04773,K04774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007952 330.0
DYD3_k127_4431240_2 Poly-beta-hydroxybutyrate polymerase K03821 - - 1.687e-257 809.0
DYD3_k127_4431240_20 ChrB domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 321.0
DYD3_k127_4431240_21 Belongs to the GcvT family K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 320.0
DYD3_k127_4431240_22 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007784 306.0
DYD3_k127_4431240_23 COG0859 ADP-heptose LPS heptosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003905 305.0
DYD3_k127_4431240_24 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007432 287.0
DYD3_k127_4431240_25 Methyltransferase small domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 289.0
DYD3_k127_4431240_26 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002483 286.0
DYD3_k127_4431240_27 Belongs to the short-chain dehydrogenases reductases (SDR) family K16066 - 1.1.1.381 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007199 277.0
DYD3_k127_4431240_28 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000559 272.0
DYD3_k127_4431240_29 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008507 261.0
DYD3_k127_4431240_3 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.168e-249 790.0
DYD3_k127_4431240_30 Conserved protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000002722 246.0
DYD3_k127_4431240_31 Cytochrome b/b6/petB - - - 0.00000000000000000000000000000000000000000000000000000000000000007604 230.0
DYD3_k127_4431240_32 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000008438 201.0
DYD3_k127_4431240_33 glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000000000000000000005393 193.0
DYD3_k127_4431240_34 Conserved hypothetical protein 2217 (DUF2460) - - - 0.0000000000000000000000000000000000000000000000001738 183.0
DYD3_k127_4431240_35 Glutathione-dependent formaldehyde-activating GFA - - - 0.00000000000000000000000000000000000000000000000165 178.0
DYD3_k127_4431240_36 Pentapeptide repeats (9 copies) - - - 0.0000000000000000000000000000000000000000009126 165.0
DYD3_k127_4431240_37 - - - - 0.00000000000000000000000000001964 125.0
DYD3_k127_4431240_38 tail protein - - - 0.00000000000000000000000000003846 121.0
DYD3_k127_4431240_39 Usg-like family - - - 0.000000000000000000000004108 104.0
DYD3_k127_4431240_4 Amidohydrolase family - - - 3.299e-229 722.0
DYD3_k127_4431240_40 Putative prokaryotic signal transducing protein - - - 0.00000000000000000000002093 102.0
DYD3_k127_4431240_41 Prophage tail length tape measure protein - - - 0.0000000000000000002361 96.0
DYD3_k127_4431240_42 - - - - 0.00000000000000005802 83.0
DYD3_k127_4431240_43 Phage cell wall peptidase, NlpC P60 family - - - 0.00000000000003306 78.0
DYD3_k127_4431240_44 cyclic nucleotide binding K10914 GO:0000166,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0017076,GO:0019219,GO:0019222,GO:0030551,GO:0030552,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032553,GO:0032555,GO:0032559,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000004436 77.0
DYD3_k127_4431240_45 - - - - 0.0000000001997 68.0
DYD3_k127_4431240_46 - - - - 0.000006086 52.0
DYD3_k127_4431240_5 COG0044 Dihydroorotase and related cyclic amidohydrolases K01465 - 3.5.2.3 5.534e-202 637.0
DYD3_k127_4431240_6 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 611.0
DYD3_k127_4431240_7 metal ion binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 574.0
DYD3_k127_4431240_8 glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004982 534.0
DYD3_k127_4431240_9 COG3970 Fumarylacetoacetate (FAA) hydrolase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 494.0
DYD3_k127_4444891_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1442.0
DYD3_k127_4444891_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494 3.6.4.12 4.468e-298 929.0
DYD3_k127_4444891_10 membrane-bound metal-dependent hydrolases K07038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 422.0
DYD3_k127_4444891_11 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004578 404.0
DYD3_k127_4444891_12 DNA polymerase III subunit delta K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 403.0
DYD3_k127_4444891_13 transmembrane transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009265 394.0
DYD3_k127_4444891_14 PFAM Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 381.0
DYD3_k127_4444891_15 Chalcone and stilbene synthases, C-terminal domain K16167 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006906 387.0
DYD3_k127_4444891_16 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 365.0
DYD3_k127_4444891_17 Nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005761 324.0
DYD3_k127_4444891_18 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 307.0
DYD3_k127_4444891_19 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009237 299.0
DYD3_k127_4444891_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.823e-261 815.0
DYD3_k127_4444891_20 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 295.0
DYD3_k127_4444891_21 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 290.0
DYD3_k127_4444891_22 Protein of unknown function (DUF4197) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003681 278.0
DYD3_k127_4444891_23 dithiol-disulfide isomerase involved in polyketide biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000996 272.0
DYD3_k127_4444891_24 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001239 270.0
DYD3_k127_4444891_25 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002749 280.0
DYD3_k127_4444891_26 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007125 276.0
DYD3_k127_4444891_27 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001428 250.0
DYD3_k127_4444891_28 Protein of unknown function (DUF938) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000643 240.0
DYD3_k127_4444891_29 FlgJ-related protein K03796 - - 0.00000000000000000000000000000000000000000000000000007459 198.0
DYD3_k127_4444891_3 AMP-binding enzyme C-terminal domain K02182 - 6.2.1.48 2.553e-231 727.0
DYD3_k127_4444891_30 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.00000000000000000000000000000000000000000000000000009068 199.0
DYD3_k127_4444891_31 surface antigen - - - 0.000000000000000000000000000000000000000000000002397 183.0
DYD3_k127_4444891_32 PFAM CBS domain containing protein - - - 0.000000000000000000000000000000000000001564 154.0
DYD3_k127_4444891_33 Aspartyl protease K06985 - - 0.000000000000000000000003305 110.0
DYD3_k127_4444891_34 cheY-homologous receiver domain - - - 0.000000000000000000000008365 106.0
DYD3_k127_4444891_35 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000000001014 103.0
DYD3_k127_4444891_36 Cytochrome c - - - 0.0000000000000000001416 92.0
DYD3_k127_4444891_37 surface antigen - - - 0.00000000000000002898 90.0
DYD3_k127_4444891_39 - - - - 0.00000000003529 66.0
DYD3_k127_4444891_4 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 8.393e-196 617.0
DYD3_k127_4444891_40 - - - - 0.0000000001028 68.0
DYD3_k127_4444891_42 - - - - 0.000001858 54.0
DYD3_k127_4444891_5 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006657 561.0
DYD3_k127_4444891_6 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 515.0
DYD3_k127_4444891_7 Lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 481.0
DYD3_k127_4444891_8 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 467.0
DYD3_k127_4444891_9 PFAM alpha beta hydrolase fold K01561 - 3.8.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 423.0
DYD3_k127_4447184_0 Phytanoyl-CoA dioxygenase (PhyH) K21195 - 1.14.11.46 0.0000000000000000000000000000000000000000000000001114 181.0
DYD3_k127_4447184_1 MobA-like NTP transferase domain - - - 0.000000000000000000001076 104.0
DYD3_k127_4552910_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.0 1287.0
DYD3_k127_4552910_1 Belongs to the GcvT family K19191 GO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006575,GO:0006576,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008480,GO:0009056,GO:0009063,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016491,GO:0016645,GO:0019695,GO:0019752,GO:0019842,GO:0031406,GO:0031974,GO:0033218,GO:0034641,GO:0035999,GO:0036094,GO:0042133,GO:0042135,GO:0042219,GO:0042402,GO:0042426,GO:0042558,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046483,GO:0046653,GO:0046997,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072341,GO:0097159,GO:0097164,GO:1901052,GO:1901053,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.5.3.19 0.0 1231.0
DYD3_k127_4552910_10 COG1062 Zn-dependent alcohol dehydrogenases, class III K00153 - 1.1.1.306 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006742 441.0
DYD3_k127_4552910_11 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 422.0
DYD3_k127_4552910_12 Choline/ethanolamine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 378.0
DYD3_k127_4552910_13 DeoR C terminal sensor domain K02444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 354.0
DYD3_k127_4552910_14 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 343.0
DYD3_k127_4552910_15 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 310.0
DYD3_k127_4552910_16 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003272 268.0
DYD3_k127_4552910_17 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000002777 237.0
DYD3_k127_4552910_18 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000000001042 222.0
DYD3_k127_4552910_19 pteridine-dependent deoxygenase K18240 - 4.1.3.40,4.1.3.45 0.0000000000000000000000000000000000000000000000000000000000003782 224.0
DYD3_k127_4552910_2 Binding-protein-dependent transport system inner membrane component K02001 - - 4.976e-266 841.0
DYD3_k127_4552910_20 NIPSNAP - - - 0.0000000000000000000000000000000000000000000000000001492 188.0
DYD3_k127_4552910_21 - - - - 0.00000000000000000000000000000000000000000000005894 175.0
DYD3_k127_4552910_22 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000002204 169.0
DYD3_k127_4552910_23 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000139 164.0
DYD3_k127_4552910_24 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000000000000000000000000000000000000000002644 164.0
DYD3_k127_4552910_25 Tryptophan halogenase - - - 0.00000000000000000000000000000000000000005843 154.0
DYD3_k127_4552910_26 Cytochrome C oxidase, cbb3-type, subunit III K16255 - - 0.000000000000000000000000000000000000002179 151.0
DYD3_k127_4552910_27 Protein of unknown function (DUF559) K07316 - 2.1.1.72 0.00000000000000000000000000000000001567 139.0
DYD3_k127_4552910_28 - - - - 0.000000000000000000000001032 107.0
DYD3_k127_4552910_29 - - - - 0.000000000000000000002359 102.0
DYD3_k127_4552910_3 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 1.286e-231 723.0
DYD3_k127_4552910_30 NmrA-like family - - - 0.000000000000000002124 85.0
DYD3_k127_4552910_32 - - - - 0.00002554 57.0
DYD3_k127_4552910_33 Bacterial periplasmic substrate-binding proteins - - - 0.0008535 47.0
DYD3_k127_4552910_4 Glucose / Sorbosone dehydrogenase - - - 8.047e-199 630.0
DYD3_k127_4552910_5 TatD related DNase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 529.0
DYD3_k127_4552910_6 Substrate binding domain of ABC-type glycine betaine transport system K02002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007659 523.0
DYD3_k127_4552910_7 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K19969 - 4.2.3.152,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009909 490.0
DYD3_k127_4552910_8 ATPases associated with a variety of cellular activities K02000 - 3.6.3.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008894 457.0
DYD3_k127_4552910_9 3-Hydroxyisobutyrate Dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 449.0
DYD3_k127_4577028_0 Protein of unknown function (DUF993) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 573.0
DYD3_k127_4577028_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 384.0
DYD3_k127_4580296_0 PFAM chemotaxis sensory transducer K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 431.0
DYD3_k127_4580296_1 Integral membrane protein TerC family - - - 0.0000000000000000000000000000000000000000000000000001909 194.0
DYD3_k127_4598762_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 1.324e-203 652.0
DYD3_k127_4598762_1 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 584.0
DYD3_k127_4598762_10 Protein of unknown function (DUF1244) K09948 - - 0.00000000000000000000000000000000000000000002502 164.0
DYD3_k127_4598762_11 Putative phosphatase (DUF442) - - - 0.00000000000000000000000000000000000000001493 161.0
DYD3_k127_4598762_12 - - - - 0.000000000000000000000000000000000001104 154.0
DYD3_k127_4598762_13 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000117 137.0
DYD3_k127_4598762_14 Uncharacterized protein conserved in bacteria (DUF2312) - - - 0.0000000000000000000000000000009527 123.0
DYD3_k127_4598762_15 SCP-2 sterol transfer family - - - 0.0000000000000000000004586 100.0
DYD3_k127_4598762_16 - - - - 0.000000000000000000008431 97.0
DYD3_k127_4598762_17 electron transfer activity K08738 GO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244 - 0.0000000002483 70.0
DYD3_k127_4598762_18 - - - - 0.0000000005228 66.0
DYD3_k127_4598762_19 Protein of unknown function (DUF2799) - - - 0.000001858 51.0
DYD3_k127_4598762_2 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 542.0
DYD3_k127_4598762_3 Aluminium induced protein K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006245 476.0
DYD3_k127_4598762_4 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 352.0
DYD3_k127_4598762_5 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 333.0
DYD3_k127_4598762_6 Peroxiredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 323.0
DYD3_k127_4598762_7 COG2186 Transcriptional regulators K05799,K14348 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001621 257.0
DYD3_k127_4598762_8 Sulphur transport K07112 - - 0.000000000000000000000000000000000000000000000000000000000000000002287 233.0
DYD3_k127_4598762_9 Sulphur transport - - - 0.00000000000000000000000000000000000000000000000000000004335 206.0
DYD3_k127_4641787_0 DNA polymerase K02337 - 2.7.7.7 0.0 1540.0
DYD3_k127_4641787_1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 459.0
DYD3_k127_4641787_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 416.0
DYD3_k127_4641787_3 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 398.0
DYD3_k127_4641787_4 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006807,GO:0006810,GO:0008104,GO:0008150,GO:0008152,GO:0015031,GO:0015399,GO:0015405,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0022804,GO:0022857,GO:0031224,GO:0032991,GO:0033036,GO:0042157,GO:0042160,GO:0042623,GO:0042626,GO:0042886,GO:0042953,GO:0043170,GO:0043190,GO:0043492,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 298.0
DYD3_k127_4641787_5 homocysteine K00547 - 2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000002506 252.0
DYD3_k127_4652789_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1028.0
DYD3_k127_4652789_1 Cytochrome C and Quinol oxidase polypeptide I K00404 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0022900,GO:0022904,GO:0034220,GO:0044237,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600 1.9.3.1 1.315e-281 874.0
DYD3_k127_4652789_10 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000001348 246.0
DYD3_k127_4652789_11 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000001861 220.0
DYD3_k127_4652789_12 COG2217 Cation transport ATPase K01533 - 3.6.3.4 0.000000000000000000000000000000000000000000000000000000001239 207.0
DYD3_k127_4652789_13 Ubiquinol-cytochrome C chaperone K17662 - - 0.00000000000000000000000000000000000000000000000000001761 195.0
DYD3_k127_4652789_14 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000004151 165.0
DYD3_k127_4652789_15 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000000004617 160.0
DYD3_k127_4652789_16 COG2913 Small protein A (tmRNA-binding) - - - 0.000000000000000000000000000000000000002228 152.0
DYD3_k127_4652789_17 transcriptional regulator, MerR - - - 0.00000000000000000000000000000000000002152 149.0
DYD3_k127_4652789_18 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000005787 144.0
DYD3_k127_4652789_19 Uncharacterized ACR, COG1399 - - - 0.000000000000000000000000004458 125.0
DYD3_k127_4652789_2 IG-like fold at C-terminal of FixG, putative oxidoreductase - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 1.207e-199 634.0
DYD3_k127_4652789_20 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000000002815 111.0
DYD3_k127_4652789_21 PFAM FixH family protein - - - 0.000000000000000000000105 104.0
DYD3_k127_4652789_22 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.00000000000000001334 91.0
DYD3_k127_4652789_23 PFAM Cbb3-type cytochrome oxidase component K00407 - - 0.0000000000009018 70.0
DYD3_k127_4652789_24 Major facilitator Superfamily - - - 0.000002515 51.0
DYD3_k127_4652789_3 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 534.0
DYD3_k127_4652789_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 507.0
DYD3_k127_4652789_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 504.0
DYD3_k127_4652789_6 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 385.0
DYD3_k127_4652789_7 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 379.0
DYD3_k127_4652789_8 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 315.0
DYD3_k127_4652789_9 Riboflavin synthase alpha chain K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000287 246.0
DYD3_k127_467060_0 4-hydroxyphenylacetate 3-hydroxylase C terminal K00483 - 1.14.14.9 7.818e-280 864.0
DYD3_k127_467060_1 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family K00317 - 1.5.8.1,1.5.8.2 2.319e-236 749.0
DYD3_k127_467060_10 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 469.0
DYD3_k127_467060_11 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 397.0
DYD3_k127_467060_12 membrane-bound lytic murein transglycosylase K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 408.0
DYD3_k127_467060_13 ABC-type spermidine putrescine transport system, permease component I K11075 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 398.0
DYD3_k127_467060_14 ABC-type spermidine putrescine transport system, permease component II K11074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 406.0
DYD3_k127_467060_15 (Fe-S) oxidoreductase K18928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 385.0
DYD3_k127_467060_16 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253 330.0
DYD3_k127_467060_17 ATPase with chaperone activity K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005112 318.0
DYD3_k127_467060_18 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008907 312.0
DYD3_k127_467060_19 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007965 298.0
DYD3_k127_467060_2 LUD domain K18929 - - 6.895e-229 717.0
DYD3_k127_467060_20 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 287.0
DYD3_k127_467060_21 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002063 289.0
DYD3_k127_467060_22 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001283 277.0
DYD3_k127_467060_23 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004716 273.0
DYD3_k127_467060_24 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001575 267.0
DYD3_k127_467060_25 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001449 254.0
DYD3_k127_467060_26 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000000000000000001063 243.0
DYD3_k127_467060_27 endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000000000000000000000001179 237.0
DYD3_k127_467060_28 LUD domain K00782 - - 0.000000000000000000000000000000000000000000000000000000000000000000008016 246.0
DYD3_k127_467060_29 BetI-type transcriptional repressor, C-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000001336 230.0
DYD3_k127_467060_3 UDP-glucoronosyl and UDP-glucosyl transferase - - - 6.124e-220 688.0
DYD3_k127_467060_30 Glutathione-dependent formaldehyde-activating, GFA - - - 0.0000000000000000000000000000000000000000000000000000000000000001431 224.0
DYD3_k127_467060_31 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.00000000000000000000000000000000000000000000000000000000104 203.0
DYD3_k127_467060_32 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000000000002618 212.0
DYD3_k127_467060_33 transcriptional regulator K02167 - - 0.000000000000000000000000000000000000000000000000000002363 199.0
DYD3_k127_467060_34 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000000000000000000000000000000006793 171.0
DYD3_k127_467060_35 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000001451 172.0
DYD3_k127_467060_36 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000000001118 149.0
DYD3_k127_467060_37 COG3030 Protein affecting phage T7 exclusion by the F plasmid K07113 - - 0.00000000000000000000000000000000000002515 149.0
DYD3_k127_467060_38 ChrR Cupin-like domain - - - 0.0000000000000000000000000000000000008948 145.0
DYD3_k127_467060_39 Protein of unknown function (DUF861) - - - 0.00000000000000000000000000000000002539 144.0
DYD3_k127_467060_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 2.702e-216 679.0
DYD3_k127_467060_40 Phosphoribosyl-ATP K01523 - 3.6.1.31 0.000000000000000000000000000000001001 137.0
DYD3_k127_467060_41 LysE type translocator - - - 0.000000000000000000000000005064 118.0
DYD3_k127_467060_42 Family of unknown function (DUF1028) - - - 0.000000001861 58.0
DYD3_k127_467060_43 Phasin protein - - - 0.00004554 52.0
DYD3_k127_467060_5 Serine hydroxymethyltransferase K00600 - 2.1.2.1 5.322e-211 663.0
DYD3_k127_467060_6 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 582.0
DYD3_k127_467060_7 COG1960 Acyl-CoA dehydrogenases K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000935 501.0
DYD3_k127_467060_8 Required for the activity of the bacterial periplasmic transport system of putrescine K11073 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 484.0
DYD3_k127_467060_9 Ring hydroxylating alpha subunit (catalytic domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 470.0
DYD3_k127_4683619_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 6.913e-194 614.0
DYD3_k127_4683619_1 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 504.0
DYD3_k127_4683619_11 - - - - 0.00007521 51.0
DYD3_k127_4683619_2 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 413.0
DYD3_k127_4683619_3 Belongs to the ClpA ClpB family K03694 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 319.0
DYD3_k127_4683619_4 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000014 278.0
DYD3_k127_4683619_5 translation initiation inhibitor, yjgF family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009314 242.0
DYD3_k127_4683619_6 transporter LysE - - - 0.000000000000000000000000000000000000000000000000000000000000001016 227.0
DYD3_k127_4683619_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000158 217.0
DYD3_k127_4683619_8 - - - - 0.000000000000000000000000000000000001372 146.0
DYD3_k127_4706197_0 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 2.488e-287 907.0
DYD3_k127_4706197_1 Penicillin amidase K01434 - 3.5.1.11 9.338e-234 747.0
DYD3_k127_4706197_10 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 343.0
DYD3_k127_4706197_11 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006247 334.0
DYD3_k127_4706197_12 Nodulation protein S (NodS) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 324.0
DYD3_k127_4706197_13 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 293.0
DYD3_k127_4706197_14 BioY protein K03523 - - 0.000000000000000000000000000000000000000000000000000000000000000000124 237.0
DYD3_k127_4706197_15 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000003583 206.0
DYD3_k127_4706197_16 - - - - 0.00000000000000000000000000000000000000000005409 178.0
DYD3_k127_4706197_17 HupE / UreJ protein K03192 - - 0.00000000000000000000000000000000000000000009635 169.0
DYD3_k127_4706197_18 COG1525 Micrococcal nuclease (thermonuclease) homologs - - - 0.000000000000000000000000000000000002889 148.0
DYD3_k127_4706197_19 Rdx family K07401 - - 0.000000000000000000000000000000000009481 137.0
DYD3_k127_4706197_2 cysteine synthase K01697 - 4.2.1.22 1.119e-213 672.0
DYD3_k127_4706197_20 RDD family - - - 0.000000000000000000000005296 108.0
DYD3_k127_4706197_21 - - - - 0.000000000000000000000182 106.0
DYD3_k127_4706197_22 - - - - 0.000000000000000001765 88.0
DYD3_k127_4706197_23 Nodulation protein S (NodS) - - - 0.00001009 55.0
DYD3_k127_4706197_3 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01758 - 4.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 597.0
DYD3_k127_4706197_4 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 570.0
DYD3_k127_4706197_5 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004699 547.0
DYD3_k127_4706197_6 With MotB forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine K02556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 373.0
DYD3_k127_4706197_7 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007717 358.0
DYD3_k127_4706197_8 cation diffusion facilitator family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 347.0
DYD3_k127_4706197_9 flagellar motor protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 346.0
DYD3_k127_4756477_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1174.0
DYD3_k127_4756477_1 - - - - 2.777e-284 888.0
DYD3_k127_4756477_10 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 531.0
DYD3_k127_4756477_11 Binding-protein-dependent transport system inner membrane component K02054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 445.0
DYD3_k127_4756477_12 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 435.0
DYD3_k127_4756477_13 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003735 436.0
DYD3_k127_4756477_14 Cobalamin synthesis protein cobW C-terminal domain K02234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 424.0
DYD3_k127_4756477_15 Binding-protein-dependent transport system inner membrane component K02053 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 411.0
DYD3_k127_4756477_16 COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM homologs K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 355.0
DYD3_k127_4756477_17 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 327.0
DYD3_k127_4756477_18 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 300.0
DYD3_k127_4756477_19 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001322 276.0
DYD3_k127_4756477_2 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 5.672e-268 840.0
DYD3_k127_4756477_20 - - - - 0.0000000000000000000000000000000000000000000000000000000006517 209.0
DYD3_k127_4756477_21 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000001895 177.0
DYD3_k127_4756477_22 protein conserved in bacteria K09975 - - 0.0000000000000000000000000002914 121.0
DYD3_k127_4756477_23 ThiS family K03636 - - 0.000000000000000000000001685 104.0
DYD3_k127_4756477_3 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 2.598e-261 820.0
DYD3_k127_4756477_4 TRAP transporter, 4TM 12TM fusion protein - - - 4.194e-259 812.0
DYD3_k127_4756477_5 COG1228 Imidazolonepropionase and related amidohydrolases - - - 1.022e-226 707.0
DYD3_k127_4756477_6 COG1228 Imidazolonepropionase and related amidohydrolases - - - 9.643e-221 689.0
DYD3_k127_4756477_7 COG0747 ABC-type dipeptide transport system, periplasmic component - - - 1.103e-205 653.0
DYD3_k127_4756477_8 Bacterial extracellular solute-binding protein K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 578.0
DYD3_k127_4756477_9 TOBE domain K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 575.0
DYD3_k127_4763137_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11745,K11747 - - 1.801e-194 623.0
DYD3_k127_4763137_1 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 510.0
DYD3_k127_4763137_10 - - - - 0.000000000000000000000000000000000000000000000000000006366 193.0
DYD3_k127_4763137_11 ROS/MUCR transcriptional regulator protein - - - 0.0000000000000000000000000000000000000000003263 162.0
DYD3_k127_4763137_12 Uncharacterised nucleotidyltransferase - - - 0.0000000000000000000000000000000001488 139.0
DYD3_k127_4763137_13 Hemerythrin HHE cation binding domain - - - 0.00000000000000000001728 99.0
DYD3_k127_4763137_2 Oligopeptide/dipeptide transporter, C-terminal region K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 496.0
DYD3_k127_4763137_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 462.0
DYD3_k127_4763137_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005186 433.0
DYD3_k127_4763137_5 PFAM pentapeptide repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 430.0
DYD3_k127_4763137_6 Chain length determinant protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 359.0
DYD3_k127_4763137_7 N-formylglutamate amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 307.0
DYD3_k127_4763137_8 Polysaccharide biosynthesis/export protein K01991 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002837 256.0
DYD3_k127_4763137_9 Involved in chromosome partitioning K08252 - 2.7.10.1 0.0000000000000000000000000000000000000000000000000000000000000000000000004803 257.0
DYD3_k127_478841_0 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 0.0 1185.0
DYD3_k127_478841_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 0.0 1037.0
DYD3_k127_478841_10 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 308.0
DYD3_k127_478841_11 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000007374 251.0
DYD3_k127_478841_12 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000004303 244.0
DYD3_k127_478841_13 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000001774 185.0
DYD3_k127_478841_14 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000005716 181.0
DYD3_k127_478841_15 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.0000000000000000000000000000000000000000000218 162.0
DYD3_k127_478841_17 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000003763 94.0
DYD3_k127_478841_18 Lipopolysaccharide assembly protein A domain - - - 0.00000000000000003243 87.0
DYD3_k127_478841_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 2.5e-290 902.0
DYD3_k127_478841_3 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 4.256e-210 658.0
DYD3_k127_478841_4 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 494.0
DYD3_k127_478841_5 Ornithine cyclodeaminase/mu-crystallin family K01750,K19743 - 1.5.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 467.0
DYD3_k127_478841_6 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006011 427.0
DYD3_k127_478841_7 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 392.0
DYD3_k127_478841_8 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000795 374.0
DYD3_k127_478841_9 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009651 331.0
DYD3_k127_48213_0 COG1961 Site-specific recombinases, DNA invertase Pin homologs K06400 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 539.0
DYD3_k127_48213_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 535.0
DYD3_k127_48213_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 490.0
DYD3_k127_48213_3 Linear amide C-N hydrolases, choloylglycine hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000021 274.0
DYD3_k127_48213_4 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000000001954 145.0
DYD3_k127_48213_5 COG0346 Lactoylglutathione lyase and related lyases - - - 0.00000000000000000000000000000000000004194 154.0
DYD3_k127_48213_6 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000000000002913 149.0
DYD3_k127_48213_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000007198 141.0
DYD3_k127_4836608_0 COG1076 DnaJ-domain-containing proteins 1 K05801 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 353.0
DYD3_k127_4836608_1 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily K15268 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006089 299.0
DYD3_k127_4836608_2 Protein of unknown function (DUF3750) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008386 282.0
DYD3_k127_4836608_3 COG3023 Negative regulator of beta-lactamase expression K01447 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001623 283.0
DYD3_k127_4836608_4 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0000000000000000000000000000000000000000000000000000000004969 203.0
DYD3_k127_4836608_5 - - - - 0.0000000000000000000000001425 109.0
DYD3_k127_4836608_6 Belongs to the MraZ family K03925 - - 0.000000000000000888 81.0
DYD3_k127_4882948_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016491,GO:0016638,GO:0016642,GO:0017144,GO:0019464,GO:0019752,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.4.2 0.0 1358.0
DYD3_k127_4882948_1 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 5.331e-310 954.0
DYD3_k127_4882948_10 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 466.0
DYD3_k127_4882948_11 Protein of unknown function (DUF3422) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 454.0
DYD3_k127_4882948_12 cytochrome c oxidase K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 418.0
DYD3_k127_4882948_13 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 411.0
DYD3_k127_4882948_14 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 419.0
DYD3_k127_4882948_15 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007599 347.0
DYD3_k127_4882948_16 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001424 272.0
DYD3_k127_4882948_17 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.000000000000000000000000000000000000000000000000000000000000000000000000003221 259.0
DYD3_k127_4882948_18 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.00000000000000000000000000000000000000000000000000000000000000000004624 237.0
DYD3_k127_4882948_19 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000001559 232.0
DYD3_k127_4882948_2 peptidase U62, modulator of DNA gyrase K03568 - - 1.595e-249 776.0
DYD3_k127_4882948_20 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000002535 234.0
DYD3_k127_4882948_21 SURF1-like protein K14998 - - 0.000000000000000000000000000000000000000000000000000000000000002606 226.0
DYD3_k127_4882948_22 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000009874 219.0
DYD3_k127_4882948_23 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000004883 213.0
DYD3_k127_4882948_24 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000000000002023 184.0
DYD3_k127_4882948_25 Protein of unknown function (DUF983) - - - 0.00000000000000000000000000000000000000000000000002916 182.0
DYD3_k127_4882948_26 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000002187 178.0
DYD3_k127_4882948_27 Iron-binding zinc finger CDGSH type - - - 0.00000000000000000000000000000000002224 136.0
DYD3_k127_4882948_28 Plasmid maintenance system killer - - - 0.000000000000000000000000000000004042 130.0
DYD3_k127_4882948_29 Protein of unknown function (DUF1761) - - - 0.0000000000000000000000000000002126 129.0
DYD3_k127_4882948_3 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 3.726e-214 676.0
DYD3_k127_4882948_30 TIGRFAM Addiction module antidote protein, HigA K21498 - - 0.0000000000000000000000000001032 120.0
DYD3_k127_4882948_31 - - - - 0.0000000000000000000000000002761 121.0
DYD3_k127_4882948_32 Cold shock protein domain K03704 - - 0.000000000000000000000000006484 111.0
DYD3_k127_4882948_33 - - - - 0.00000000000000001285 88.0
DYD3_k127_4882948_34 - - - - 0.000000002518 67.0
DYD3_k127_4882948_4 Thiol disulfide interchange protein K04084,K08344 - 1.8.1.8 5.947e-208 668.0
DYD3_k127_4882948_5 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 614.0
DYD3_k127_4882948_6 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 560.0
DYD3_k127_4882948_7 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 529.0
DYD3_k127_4882948_8 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007934 481.0
DYD3_k127_4882948_9 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 472.0
DYD3_k127_490047_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 3.06e-322 999.0
DYD3_k127_490047_1 glutamine synthetase K01915 - 6.3.1.2 2.453e-247 769.0
DYD3_k127_490047_10 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 372.0
DYD3_k127_490047_11 Dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 337.0
DYD3_k127_490047_12 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 291.0
DYD3_k127_490047_13 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000000000000000002848 238.0
DYD3_k127_490047_14 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000000000000000000003191 234.0
DYD3_k127_490047_15 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000000002383 220.0
DYD3_k127_490047_16 Histidine phosphatase superfamily (branch 1) - - - 0.000000000000000000000000000001489 130.0
DYD3_k127_490047_17 Cold shock protein domain K03704 - - 0.0000000000000000000000007601 109.0
DYD3_k127_490047_18 efflux protein K05834 - - 0.00000000000000000000001315 108.0
DYD3_k127_490047_19 PAS domain - - - 0.00000000000000000005072 95.0
DYD3_k127_490047_2 PFAM AMP-dependent synthetase and ligase K01895 - 6.2.1.1 3.367e-231 728.0
DYD3_k127_490047_20 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000001035 102.0
DYD3_k127_490047_23 Sporulation related domain - - - 0.0000000000007183 81.0
DYD3_k127_490047_24 peptidyl-tyrosine sulfation - - - 0.00000006648 65.0
DYD3_k127_490047_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.076e-228 721.0
DYD3_k127_490047_4 Aldehyde dehydrogenase family - - - 2.564e-224 703.0
DYD3_k127_490047_5 COG4663 TRAP-type mannitol chloroaromatic compound transport system, periplasmic component - - - 5.474e-206 643.0
DYD3_k127_490047_6 Iron-containing alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 579.0
DYD3_k127_490047_7 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 456.0
DYD3_k127_490047_8 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 434.0
DYD3_k127_490047_9 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000693 372.0
DYD3_k127_4936801_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 9.789e-251 781.0
DYD3_k127_4936801_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 380.0
DYD3_k127_4936801_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 349.0
DYD3_k127_4936801_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000000000008893 261.0
DYD3_k127_4936801_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000000000000000000000000002458 216.0
DYD3_k127_4936801_5 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.0000000000000000000000000000000000000000000000000000000005434 207.0
DYD3_k127_4936801_6 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000001315 141.0
DYD3_k127_4944496_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 579.0
DYD3_k127_4944496_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006393 423.0
DYD3_k127_4944496_2 Transposase and inactivated derivatives - - - 0.000000000000000000000000000004646 119.0
DYD3_k127_4960614_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 4.506e-202 636.0
DYD3_k127_4960614_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 2.238e-194 613.0
DYD3_k127_4960614_10 MOSC domain K07140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001033 270.0
DYD3_k127_4960614_11 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000002616 259.0
DYD3_k127_4960614_12 Domain of unknown function (DUF4115) K15539 - - 0.000000000000000000000000000000000000000000000000000000000000000000001146 254.0
DYD3_k127_4960614_13 PFAM Methyltransferase type - - - 0.00000000000000000000000000000000000000000000000000000000000008043 218.0
DYD3_k127_4960614_14 Protein of unknown function (DUF1178) - - - 0.000000000000000000000000000000000000000000007684 167.0
DYD3_k127_4960614_15 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000001047 124.0
DYD3_k127_4960614_16 Domain of unknown function (DUF4167) - - - 0.00000000000000000001979 101.0
DYD3_k127_4960614_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 561.0
DYD3_k127_4960614_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007745 501.0
DYD3_k127_4960614_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781 - 5.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009352 440.0
DYD3_k127_4960614_5 Carbon-nitrogen hydrolase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 374.0
DYD3_k127_4960614_6 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 336.0
DYD3_k127_4960614_7 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 330.0
DYD3_k127_4960614_8 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 338.0
DYD3_k127_4960614_9 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 289.0
DYD3_k127_4962027_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.719e-248 775.0
DYD3_k127_4980148_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 567.0
DYD3_k127_4980148_1 phosphomannomutase K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 293.0
DYD3_k127_499647_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1658.0
DYD3_k127_499647_1 AMP-binding enzyme C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004971 615.0
DYD3_k127_499647_10 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003524 254.0
DYD3_k127_499647_11 TIGRFAM Hydrolase, ortholog 1, exosortase system type 1 associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003712 258.0
DYD3_k127_499647_12 Lysylphosphatidylglycerol synthase TM region - - - 0.0000000000000000000000000000000000000000000000000000000000000000001336 242.0
DYD3_k127_499647_13 Macrocin-O-methyltransferase (TylF) - - - 0.000000000000000000000000000000000000000000000000000000000004553 215.0
DYD3_k127_499647_14 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000001572 221.0
DYD3_k127_499647_15 TIGRFAM hydrolase, ortholog 2, exosortase system type 1 associated - - - 0.0000000000000000000000000000000000000000000000000000000471 211.0
DYD3_k127_499647_16 Acetyltransferase (Isoleucine patch superfamily) - - - 0.0000000000000000000000000000000000000000000000000002297 192.0
DYD3_k127_499647_17 Protein of unknown function (DUF3305) - - - 0.000000000000000000000000000000000000000000000000005368 186.0
DYD3_k127_499647_18 - - - - 0.000000000000000000000000000006277 127.0
DYD3_k127_499647_19 Protein of unknown function (DUF3306) - - - 0.0000000000000000000000000002015 123.0
DYD3_k127_499647_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003715 560.0
DYD3_k127_499647_20 Phosphopantetheine attachment site - - - 0.000000000000000000000001436 106.0
DYD3_k127_499647_21 Phosphopantetheine attachment site K02078 - - 0.00000000001362 70.0
DYD3_k127_499647_22 TIGRFAM formate dehydrogenase region TAT target - - - 0.0000006431 60.0
DYD3_k127_499647_3 PFAM Orn DAP Arg decarboxylase 2 K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 542.0
DYD3_k127_499647_4 Asparagine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003744 487.0
DYD3_k127_499647_5 4Fe-4S dicluster domain K00124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006606 391.0
DYD3_k127_499647_6 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 351.0
DYD3_k127_499647_7 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 326.0
DYD3_k127_499647_8 Protein involved in cellulose biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 299.0
DYD3_k127_499647_9 UDP-4-amino-4-deoxy-L-arabinose aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009167 268.0
DYD3_k127_4997083_0 mechanosensitive ion channel K05802 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 499.0
DYD3_k127_4997083_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 422.0
DYD3_k127_4997083_10 COG0471 Di- and tricarboxylate - - - 0.000000000000000004973 93.0
DYD3_k127_4997083_11 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.00002069 51.0
DYD3_k127_4997083_2 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 366.0
DYD3_k127_4997083_3 Belongs to the WrbA family K03809 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 341.0
DYD3_k127_4997083_4 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 327.0
DYD3_k127_4997083_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000003414 219.0
DYD3_k127_4997083_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000003444 205.0
DYD3_k127_4997083_7 membrane - - - 0.000000000000000000000000000000000000000000002875 173.0
DYD3_k127_4997083_8 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000000007445 129.0
DYD3_k127_4997083_9 Membrane - - - 0.00000000000000000000000000003765 121.0
DYD3_k127_5014841_0 trimethylamine methyltransferase K14083 - 2.1.1.250 3.493e-261 812.0
DYD3_k127_5014841_1 Protein of unknown function (DUF2971) - - - 0.00000000000000000004643 99.0
DYD3_k127_5046142_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 2.267e-271 849.0
DYD3_k127_5046142_1 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 6.974e-249 791.0
DYD3_k127_5046142_10 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 410.0
DYD3_k127_5046142_11 LamB/YcsF family K07160 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 378.0
DYD3_k127_5046142_12 COG1126 ABC-type polar amino acid transport system ATPase component K02028,K02029,K02030,K09972 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 400.0
DYD3_k127_5046142_13 Ligated ion channel L-glutamate- and glycine-binding site K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 389.0
DYD3_k127_5046142_14 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 364.0
DYD3_k127_5046142_15 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 319.0
DYD3_k127_5046142_16 amino acid ABC transporter K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003472 307.0
DYD3_k127_5046142_17 Bacterial periplasmic substrate-binding proteins K02029,K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 302.0
DYD3_k127_5046142_18 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006409 301.0
DYD3_k127_5046142_19 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009113 248.0
DYD3_k127_5046142_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 3.398e-220 702.0
DYD3_k127_5046142_20 Biotin carboxylase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000003229 204.0
DYD3_k127_5046142_21 Acetyltransferase (GNAT) domain K00657 - 2.3.1.57 0.00000000000000000000000000000001506 135.0
DYD3_k127_5046142_22 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA - - - 0.0000000000000000000000000000002421 124.0
DYD3_k127_5046142_3 Creatinase/Prolidase N-terminal domain K01271,K15783 - 3.4.13.9,3.5.4.44 3.07e-215 685.0
DYD3_k127_5046142_4 Monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 582.0
DYD3_k127_5046142_5 COG1879 ABC-type sugar transport system, periplasmic component K11930 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 547.0
DYD3_k127_5046142_6 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 499.0
DYD3_k127_5046142_7 Belongs to the peptidase S1C family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 486.0
DYD3_k127_5046142_8 Branched-chain amino acid transport system / permease component K10440 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 455.0
DYD3_k127_5046142_9 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 431.0
DYD3_k127_5157044_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1393.0
DYD3_k127_5157044_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 8.418e-290 902.0
DYD3_k127_5157044_10 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 GO:0001539,GO:0002048,GO:0002049,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005575,GO:0005623,GO:0005886,GO:0006518,GO:0006629,GO:0006643,GO:0006664,GO:0006807,GO:0006810,GO:0006928,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009237,GO:0009247,GO:0009636,GO:0009987,GO:0015886,GO:0016020,GO:0016209,GO:0016491,GO:0016684,GO:0019184,GO:0019290,GO:0019748,GO:0034641,GO:0040011,GO:0042221,GO:0043043,GO:0043107,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044464,GO:0044550,GO:0046467,GO:0048870,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051674,GO:0051716,GO:0055114,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0071978,GO:0097237,GO:0097588,GO:0098754,GO:0098869,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901678,GO:1903509,GO:1990748 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 358.0
DYD3_k127_5157044_11 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 302.0
DYD3_k127_5157044_12 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000006628 228.0
DYD3_k127_5157044_13 Redoxin K02199 - - 0.0000000000000000000000000000000000000000000000000000000000009259 221.0
DYD3_k127_5157044_14 Bacterial periplasmic substrate-binding proteins K09997 - - 0.000000000000000000000000000000000000000000000006479 176.0
DYD3_k127_5157044_15 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000102 175.0
DYD3_k127_5157044_16 Acyltransferase family - - - 0.000000000000000000000000000000000000000000000991 180.0
DYD3_k127_5157044_17 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000000001937 179.0
DYD3_k127_5157044_18 restriction endonuclease K07448 - - 0.000000000000000000000000000000000000001653 150.0
DYD3_k127_5157044_19 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.000000002027 61.0
DYD3_k127_5157044_2 COG1138 Cytochrome c biogenesis factor K02198 - - 7.405e-286 891.0
DYD3_k127_5157044_3 Periplasmic binding protein K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004636 584.0
DYD3_k127_5157044_4 Belongs to the binding-protein-dependent transport system permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000765 553.0
DYD3_k127_5157044_5 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 508.0
DYD3_k127_5157044_6 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008404 447.0
DYD3_k127_5157044_7 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 446.0
DYD3_k127_5157044_8 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 444.0
DYD3_k127_5157044_9 AAA domain, putative AbiEii toxin, Type IV TA system K02028,K10025 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000281 405.0
DYD3_k127_5166176_0 nitrite reductase K15864 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.2.1,1.7.99.1 1.496e-303 939.0
DYD3_k127_5166176_1 belongs to the aldehyde dehydrogenase family - - - 4.065e-267 828.0
DYD3_k127_5166176_10 PFAM type I phosphodiesterase nucleotide pyrophosphatase K19670 - 3.11.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 581.0
DYD3_k127_5166176_11 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 583.0
DYD3_k127_5166176_12 Cytochrome D1 heme domain K19345 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 546.0
DYD3_k127_5166176_13 Peptidase dimerisation domain K01295 - 3.4.17.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 427.0
DYD3_k127_5166176_14 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 404.0
DYD3_k127_5166176_15 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004974 412.0
DYD3_k127_5166176_16 ABC-type dipeptide transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 411.0
DYD3_k127_5166176_17 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 371.0
DYD3_k127_5166176_18 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 347.0
DYD3_k127_5166176_19 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 349.0
DYD3_k127_5166176_2 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 1.084e-266 829.0
DYD3_k127_5166176_20 overlaps another CDS with the same product name - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 346.0
DYD3_k127_5166176_21 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 316.0
DYD3_k127_5166176_22 Phytanoyl-CoA dioxygenase (PhyH) K21195 - 1.14.11.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 304.0
DYD3_k127_5166176_23 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 311.0
DYD3_k127_5166176_24 protein involved in response to NO K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003735 306.0
DYD3_k127_5166176_25 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003228 282.0
DYD3_k127_5166176_26 cytochrome c oxidase (Subunit II) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000105 256.0
DYD3_k127_5166176_27 nucleotidyl transferase K07281 - 2.7.7.74 0.00000000000000000000000000000000000000000000000000000000000000000000000001186 258.0
DYD3_k127_5166176_28 Protein of unknown function (DUF1194) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002698 240.0
DYD3_k127_5166176_29 transcriptional regulator AsnC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000165 229.0
DYD3_k127_5166176_3 Cytochrome C and Quinol oxidase polypeptide I K02274 - 1.9.3.1 1.266e-265 827.0
DYD3_k127_5166176_30 Lysylphosphatidylglycerol synthase TM region - - - 0.00000000000000000000000000000000000000000000000000000000000009155 226.0
DYD3_k127_5166176_31 TRAP-type mannitol chloroaromatic compound transport system small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000003126 217.0
DYD3_k127_5166176_32 Domain of unknown function (DUF4202) - - - 0.0000000000000000000000000000000000000000000000000000000003596 210.0
DYD3_k127_5166176_33 signal sequence binding K07152 - - 0.0000000000000000000000000000000000000000000000000000000009846 214.0
DYD3_k127_5166176_34 flavin adenine dinucleotide binding K16841 - 5.1.99.3 0.000000000000000000000000000000000000000000000000001028 192.0
DYD3_k127_5166176_35 heme biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000008242 186.0
DYD3_k127_5166176_36 protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000006281 167.0
DYD3_k127_5166176_37 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.000000000000000000000000000000000000000005895 160.0
DYD3_k127_5166176_38 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.0000000000000000000000000000000000001372 148.0
DYD3_k127_5166176_39 - - - - 0.000000000000000000000000000000000000147 147.0
DYD3_k127_5166176_4 Cytochrome D1 heme domain - - - 6.653e-233 730.0
DYD3_k127_5166176_40 oxygen carrier activity K07216 - - 0.0000000000000000000000000000001812 129.0
DYD3_k127_5166176_41 CbiX - - - 0.00000000000000000000000001275 121.0
DYD3_k127_5166176_42 Cytochrome C oxidase, cbb3-type, subunit III K19344 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000001776 111.0
DYD3_k127_5166176_43 - - - - 0.0000000000001219 72.0
DYD3_k127_5166176_44 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs - - - 0.000000000001163 69.0
DYD3_k127_5166176_5 N-methylhydantoinase A acetone carboxylase, beta subunit - - - 1.068e-213 685.0
DYD3_k127_5166176_6 FMN_bind K19339,K19343 - - 2.556e-211 677.0
DYD3_k127_5166176_7 Threonine synthase K01733 - 4.2.3.1 2.869e-211 662.0
DYD3_k127_5166176_8 4Fe-4S single cluster domain - - - 1.051e-202 639.0
DYD3_k127_5166176_9 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 7.209e-201 634.0
DYD3_k127_5170624_0 Nitrile hydratase, alpha chain K01721 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 333.0
DYD3_k127_5170624_1 FtsZ-dependent cytokinesis - - - 0.000000000000000000000000000000000000000000000000000000000002384 216.0
DYD3_k127_5170624_2 Protein of unknown function (DUF1272) K09984 - - 0.0000000000000000000000000000000000000000000000003327 179.0
DYD3_k127_5170624_3 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000001195 173.0
DYD3_k127_5170624_4 NHase catalyzes the hydration of various nitrile compounds to the corresponding amides K20807 - 4.2.1.84 0.00000000000000000000000000000000001006 147.0
DYD3_k127_5170624_5 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000000000004202 124.0
DYD3_k127_5198716_0 Endoribonuclease L-PSP - - - 0.0001018 47.0
DYD3_k127_5216763_0 COG0513 Superfamily II DNA and RNA helicases K17675 - 3.6.4.13 5.363e-285 901.0
DYD3_k127_5216763_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 567.0
DYD3_k127_5216763_10 Staphylococcal nuclease homologue - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 299.0
DYD3_k127_5216763_11 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003313 277.0
DYD3_k127_5216763_12 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067,K06192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001295 276.0
DYD3_k127_5216763_13 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006897 269.0
DYD3_k127_5216763_14 transcriptional regulator K07736 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005298 263.0
DYD3_k127_5216763_15 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000006814 244.0
DYD3_k127_5216763_16 transport system auxiliary component K18480 - - 0.000000000000000000000000000000000000000000000000000000000000000002144 238.0
DYD3_k127_5216763_17 Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.00000000000000000000000000000000000000000000000000000000000000006402 233.0
DYD3_k127_5216763_18 Secreted protein - - - 0.00000000000000000000000000000000000000000000000000000000009942 213.0
DYD3_k127_5216763_19 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000003441 205.0
DYD3_k127_5216763_2 peptidase M48, Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 567.0
DYD3_k127_5216763_20 Sigma-70, region 4 - - - 0.0000000000000000000000000000000000000000000000000000000005506 211.0
DYD3_k127_5216763_21 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000000000005638 203.0
DYD3_k127_5216763_22 Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP) K00758,K05774 - 2.4.2.4,2.7.4.23 0.00000000000000000000000000000000000000000000000000008682 192.0
DYD3_k127_5216763_23 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000001008 175.0
DYD3_k127_5216763_24 Tellurite resistance protein TerB - - - 0.00000000000000000000000000000000000000004363 156.0
DYD3_k127_5216763_25 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.00000000000000000000000000000000000000007605 155.0
DYD3_k127_5216763_26 Lipid A 3-O-deacylase (PagL) - - - 0.00000000000000000000000000000000003476 140.0
DYD3_k127_5216763_27 Putative peptidoglycan binding domain - - - 0.000000000000000000000000000000001521 138.0
DYD3_k127_5216763_28 Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins - - - 0.000000000000000000000001558 113.0
DYD3_k127_5216763_29 Cupin domain - - - 0.0000000000000000000002615 106.0
DYD3_k127_5216763_3 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003871,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0042085,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050667,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 503.0
DYD3_k127_5216763_30 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0004391 44.0
DYD3_k127_5216763_4 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000722 489.0
DYD3_k127_5216763_5 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 400.0
DYD3_k127_5216763_6 ATPases associated with a variety of cellular activities K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 358.0
DYD3_k127_5216763_7 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 313.0
DYD3_k127_5216763_8 Nicotinamidase K08281 - 3.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 299.0
DYD3_k127_5216763_9 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009966 293.0
DYD3_k127_5235252_0 Allophanate hydrolase subunit 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000808 537.0
DYD3_k127_5235252_1 PFAM Prokaryotic protein of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 524.0
DYD3_k127_5235252_2 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008344 525.0
DYD3_k127_5235252_3 Carboxyltransferase domain, subdomain C and D K01941 - 6.3.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 474.0
DYD3_k127_5235252_4 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 390.0
DYD3_k127_5235252_5 Predicted integral membrane protein (DUF2189) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 373.0
DYD3_k127_5235252_6 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 330.0
DYD3_k127_5235252_7 BioY family K03523 - - 0.000000000000000000000000000000000000000000000000000000000000000000001077 242.0
DYD3_k127_5235252_8 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000001331 231.0
DYD3_k127_5235252_9 Aldo/keto reductase family - - - 0.00000002977 59.0
DYD3_k127_5240123_0 Cytochrome P450 - - - 1.078e-214 675.0
DYD3_k127_5240123_1 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008995 392.0
DYD3_k127_5240123_2 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000000000000002772 187.0
DYD3_k127_5240123_3 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000001154 162.0
DYD3_k127_5240123_5 GCN5 family acetyltransferase - - - 0.000000000000000000000000000005805 122.0
DYD3_k127_5240123_6 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases K03829 GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031248,GO:0031365,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234 - 0.00005684 46.0
DYD3_k127_5240266_0 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.000000000000000000000000000000000000000000000000000000000000001228 223.0
DYD3_k127_5240266_1 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000003283 181.0
DYD3_k127_5240266_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000001425 157.0
DYD3_k127_5240266_3 GcrA cell cycle regulator K13583 - - 0.0000000000000000000000000000000000775 138.0
DYD3_k127_5240266_4 GIY-YIG type nucleases (URI domain) K07461 - - 0.000000000000000000000000000000506 124.0
DYD3_k127_5240266_5 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000000000000000000000000000004493 130.0
DYD3_k127_5240266_6 Cytochrome c - - - 0.000000000000000001791 90.0
DYD3_k127_5251729_0 COG0515 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 556.0
DYD3_k127_5251729_1 SMART protein phosphatase 2C domain protein K01090 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000004204 213.0
DYD3_k127_5251729_2 Forkhead associated domain K11894 - - 0.000000000000000000000006821 107.0
DYD3_k127_5254695_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 4.149e-227 711.0
DYD3_k127_5254695_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K12256 - 2.6.1.113 5.716e-215 678.0
DYD3_k127_5254695_10 Protein of unknown function (DUF2971) - - - 0.00000000000004125 76.0
DYD3_k127_5254695_11 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000009741 60.0
DYD3_k127_5254695_12 Evidence 5 No homology to any previously reported sequences - - - 0.0000007176 53.0
DYD3_k127_5254695_13 - - - - 0.00004649 48.0
DYD3_k127_5254695_2 FAD dependent oxidoreductase K09471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007102 518.0
DYD3_k127_5254695_3 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 464.0
DYD3_k127_5254695_4 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004643 351.0
DYD3_k127_5254695_5 Protein of unknown function (DUF1194) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005897 257.0
DYD3_k127_5254695_6 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000000321 248.0
DYD3_k127_5254695_7 - - - - 0.000000000000000000000000000000000007278 152.0
DYD3_k127_5254695_8 Protein required for attachment to host cells - - - 0.0000000000000000000000000000000001996 136.0
DYD3_k127_5254695_9 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000005013 83.0
DYD3_k127_5256146_0 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 576.0
DYD3_k127_5256146_1 Sugar-transfer associated ATP-grasp - - - 0.000000000000000000000000000000000000000000000000000000000007655 222.0
DYD3_k127_5256146_2 COG2771 DNA-binding HTH domain-containing proteins - - - 0.0000000000000000000000000000000000001118 149.0
DYD3_k127_5256146_3 Phosphate transport regulator (Distant homolog of PhoU) K07220 - - 0.0000000000000000001204 90.0
DYD3_k127_5256146_4 - - - - 0.0000000000000000003933 94.0
DYD3_k127_5256146_5 - - - - 0.0000006466 52.0
DYD3_k127_5264327_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 2.953e-221 694.0
DYD3_k127_5264327_1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000527 339.0
DYD3_k127_5264327_2 - - - - 0.0000000000000000000000000005717 119.0
DYD3_k127_5264327_3 Protein of unknown function (DUF1467) - - - 0.000000000000000000000000002573 112.0
DYD3_k127_5303530_0 transport system, permease component K05778 - - 3.282e-224 712.0
DYD3_k127_5303530_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 4.424e-206 651.0
DYD3_k127_5303530_10 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000601 319.0
DYD3_k127_5303530_11 GTP cyclohydrolase K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008645 314.0
DYD3_k127_5303530_12 transport system, ATPase component K05779 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000719 275.0
DYD3_k127_5303530_13 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003716 257.0
DYD3_k127_5303530_14 Subtilase family K01342,K14645 - 3.4.21.62 0.00000000000000000000000000000000000000000000000000000000000003669 233.0
DYD3_k127_5303530_15 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000000000000000001187 214.0
DYD3_k127_5303530_16 Modulates RecA activity K03565 - - 0.00000000000000000000000000000000000000000000000405 184.0
DYD3_k127_5303530_17 ABC-2 type transporter - - - 0.00000000000000000000000000000000000000000000005889 181.0
DYD3_k127_5303530_18 TraB family K09973 - - 0.00000000000000000000000000000000000000000002291 174.0
DYD3_k127_5303530_19 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000000000135 173.0
DYD3_k127_5303530_2 transport system periplasmic component K05777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 535.0
DYD3_k127_5303530_20 - - - - 0.0000000000000000000000000000000000003489 149.0
DYD3_k127_5303530_21 PFAM Cupin 2 conserved barrel domain protein K21700 - - 0.00000000000000000000000000000000006774 135.0
DYD3_k127_5303530_22 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000008774 138.0
DYD3_k127_5303530_23 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000002238 53.0
DYD3_k127_5303530_3 Acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 531.0
DYD3_k127_5303530_4 Belongs to the GcvT family K00605,K17486 - 2.1.1.269,2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 459.0
DYD3_k127_5303530_5 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006243 453.0
DYD3_k127_5303530_6 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 373.0
DYD3_k127_5303530_7 COG0842 ABC-type multidrug transport system, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005557 373.0
DYD3_k127_5303530_8 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007901 349.0
DYD3_k127_5303530_9 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 325.0
DYD3_k127_5331896_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1451.0
DYD3_k127_5331896_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1335.0
DYD3_k127_5331896_10 Gcn5-related n-acetyltransferase - - - 0.0000000000000000000000000002408 115.0
DYD3_k127_5331896_11 ParB-like nuclease domain - - - 0.00000000000000000002905 93.0
DYD3_k127_5331896_2 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1118.0
DYD3_k127_5331896_3 Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source K01505,K05396 - 3.5.99.7,4.4.1.15 6.816e-195 610.0
DYD3_k127_5331896_4 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 344.0
DYD3_k127_5331896_5 thiamine-containing compound biosynthetic process K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007596 293.0
DYD3_k127_5331896_6 Peptidase family S58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002322 273.0
DYD3_k127_5331896_7 helix_turn_helix ASNC type K03719 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001857 252.0
DYD3_k127_5331896_8 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000002829 214.0
DYD3_k127_5331896_9 PEP-CTERM motif - - - 0.0000000000000000000000000000000000000002098 157.0
DYD3_k127_5351544_0 Histidine kinase-like ATPases K14980 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 507.0
DYD3_k127_5351544_1 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 495.0
DYD3_k127_5351544_2 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 484.0
DYD3_k127_5351544_3 Belongs to the mandelate racemase muconate lactonizing enzyme family K19802 - 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006227 428.0
DYD3_k127_5351544_4 Transcriptional regulatory protein, C terminal K14981 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 342.0
DYD3_k127_5351544_5 Membrane protein involved in the export of O-antigen and teichoic acid K03328 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 304.0
DYD3_k127_5351544_6 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000001062 202.0
DYD3_k127_5351544_8 N-terminal half of MaoC dehydratase K09709 - 4.2.1.153 0.000000000003118 79.0
DYD3_k127_5351544_9 - - - - 0.0000283 51.0
DYD3_k127_535525_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1448.0
DYD3_k127_535525_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 4.222e-312 968.0
DYD3_k127_535525_10 Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000691 560.0
DYD3_k127_535525_11 Amidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 555.0
DYD3_k127_535525_12 ubiquitin protein ligase binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 499.0
DYD3_k127_535525_13 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 461.0
DYD3_k127_535525_14 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 449.0
DYD3_k127_535525_15 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005404 413.0
DYD3_k127_535525_16 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 381.0
DYD3_k127_535525_17 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 369.0
DYD3_k127_535525_18 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 328.0
DYD3_k127_535525_19 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 329.0
DYD3_k127_535525_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 1.648e-256 814.0
DYD3_k127_535525_20 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002019 276.0
DYD3_k127_535525_21 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007374 251.0
DYD3_k127_535525_22 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21563 - - 0.0000000000000000000000000000000000000000000000000000000000000000008122 236.0
DYD3_k127_535525_23 Peptidase A4 family - - - 0.00000000000000000000000000000000000000000000000000000000000000003055 235.0
DYD3_k127_535525_24 phosphoesterase, PA-phosphatase related - - - 0.00000000000000000000000000000000000000000000000000000000000000878 233.0
DYD3_k127_535525_25 PAS domain - - - 0.000000000000000000000000000000000000000000000000000004605 198.0
DYD3_k127_535525_26 Methyltransferase domain - - - 0.0000000000000000000000000000000001085 139.0
DYD3_k127_535525_27 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000000000000000000197 123.0
DYD3_k127_535525_28 - - - - 0.000000000000000000000002727 105.0
DYD3_k127_535525_3 Adenylate cyclase K01768 - 4.6.1.1 5.206e-249 780.0
DYD3_k127_535525_30 Protein of unknown function (FYDLN_acid) - - - 0.000002814 55.0
DYD3_k127_535525_4 ABC transporter C-terminal domain K15738 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363 - 8.943e-240 758.0
DYD3_k127_535525_5 Belongs to the ABC transporter superfamily - - - 3.039e-236 742.0
DYD3_k127_535525_6 Gamma-glutamyltranspeptidase - - - 2.716e-214 679.0
DYD3_k127_535525_7 TamB, inner membrane protein subunit of TAM complex K09800 - - 2.266e-213 716.0
DYD3_k127_535525_8 Peptidase family M20/M25/M40 - - - 1.222e-202 640.0
DYD3_k127_535525_9 Surface antigen K07278 - - 9.235e-199 637.0
DYD3_k127_5373142_0 homoserine dehydrogenase - - - 3.512e-224 702.0
DYD3_k127_5373142_1 COG2873 O-acetylhomoserine sulfhydrylase K01740 - 2.5.1.49 1.172e-217 683.0
DYD3_k127_5373142_10 Nucleotidyl transferase K00978 - 2.7.7.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000626 347.0
DYD3_k127_5373142_11 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00651 - 2.3.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 308.0
DYD3_k127_5373142_12 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 330.0
DYD3_k127_5373142_13 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000002777 266.0
DYD3_k127_5373142_14 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002318 290.0
DYD3_k127_5373142_15 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008697 251.0
DYD3_k127_5373142_16 DNA-binding transcriptional activator of the SARP family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000121 261.0
DYD3_k127_5373142_17 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000002282 223.0
DYD3_k127_5373142_18 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000001231 194.0
DYD3_k127_5373142_19 cheY-homologous receiver domain K11443 - - 0.000000000000000000000000000000000000000002344 160.0
DYD3_k127_5373142_2 amine oxidase K01854 - 5.4.99.9 6.296e-211 673.0
DYD3_k127_5373142_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 8.632e-195 623.0
DYD3_k127_5373142_4 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 612.0
DYD3_k127_5373142_5 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 558.0
DYD3_k127_5373142_6 Polysaccharide biosynthesis protein K01709 - 4.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397 533.0
DYD3_k127_5373142_7 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 432.0
DYD3_k127_5373142_8 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 393.0
DYD3_k127_5373142_9 Belongs to the DapA family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 395.0
DYD3_k127_5390195_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1507.0
DYD3_k127_5390195_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00244 - 1.3.5.4 5.629e-280 871.0
DYD3_k127_5390195_10 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00246 - - 0.00000000000000000000000001431 112.0
DYD3_k127_5390195_2 COG1951 Tartrate dehydratase alpha subunit Fumarate hydratase class I, N-terminal domain K01677,K03779 - 4.2.1.2,4.2.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 538.0
DYD3_k127_5390195_3 4Fe-4S dicluster domain K00124,K21308 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 391.0
DYD3_k127_5390195_4 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 374.0
DYD3_k127_5390195_5 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 335.0
DYD3_k127_5390195_6 Succinate dehydrogenase Fumarate reductase K00245 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 338.0
DYD3_k127_5390195_7 COG1838 Tartrate dehydratase beta subunit Fumarate hydratase class I, C-terminal domain K03780 - 4.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 314.0
DYD3_k127_5390195_8 DMSO reductase anchor subunit K21309 - - 0.000000000000000000000000000000000000000000000000000000000000009482 219.0
DYD3_k127_5390195_9 succinate dehydrogenase K00247 - - 0.000000000000000000000000000000001318 138.0
DYD3_k127_5431411_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 1.056e-221 691.0
DYD3_k127_5431411_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 515.0
DYD3_k127_5431411_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 501.0
DYD3_k127_5431411_3 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 503.0
DYD3_k127_5440783_0 Short chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 325.0
DYD3_k127_5440783_1 LysR substrate binding domain K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 316.0
DYD3_k127_5440783_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001358 283.0
DYD3_k127_5440783_3 alpha beta - - - 0.00000000009672 64.0
DYD3_k127_5452363_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 4.426e-285 882.0
DYD3_k127_5452363_1 Biotin carboxylase C-terminal domain K01965,K01968,K13777 - 6.4.1.3,6.4.1.4,6.4.1.5 2.853e-264 829.0
DYD3_k127_5452363_10 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 305.0
DYD3_k127_5452363_11 2-hydroxychromene-2-carboxylate isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001605 264.0
DYD3_k127_5452363_12 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005086 265.0
DYD3_k127_5452363_13 carbohydrate binding K07336 - - 0.00000000000000000000000000000000000000000000000000000007804 208.0
DYD3_k127_5452363_14 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000007639 162.0
DYD3_k127_5452363_15 Protein of unknown function (DUF1489) - - - 0.000000000000000000000000000000000000003512 152.0
DYD3_k127_5452363_16 Belongs to the P(II) protein family - - - 0.000000000000000000000000000000000007631 139.0
DYD3_k127_5452363_2 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 592.0
DYD3_k127_5452363_21 glycosyl transferase family 2 K00721 - 2.4.1.83 0.0008582 48.0
DYD3_k127_5452363_3 alcohol dehydrogenase K00001 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 479.0
DYD3_k127_5452363_4 COG0119 Isopropylmalate homocitrate citramalate synthases K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000411 419.0
DYD3_k127_5452363_5 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 421.0
DYD3_k127_5452363_6 COG0463 Glycosyltransferases involved in cell wall biogenesis K20534 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 364.0
DYD3_k127_5452363_7 Protein of unknown function (DUF1538) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004307 334.0
DYD3_k127_5452363_8 Enoyl-CoA hydratase K13766 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007796 320.0
DYD3_k127_5452363_9 Protein of unknown function (DUF1538) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 315.0
DYD3_k127_5458984_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 4.504e-221 692.0
DYD3_k127_5458984_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 409.0
DYD3_k127_5458984_2 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 383.0
DYD3_k127_5458984_3 Methionine synthase K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 291.0
DYD3_k127_5458984_4 Domain of unknown function (DUF1476) - - - 0.00000000000000000000000000000000000002247 146.0
DYD3_k127_5478891_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 6.344e-261 820.0
DYD3_k127_5478891_1 Amidohydrolase family K01485 - 3.5.4.1 1.755e-221 693.0
DYD3_k127_5478891_10 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 419.0
DYD3_k127_5478891_11 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007199 407.0
DYD3_k127_5478891_12 Male sterility protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 392.0
DYD3_k127_5478891_13 transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 385.0
DYD3_k127_5478891_14 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 357.0
DYD3_k127_5478891_15 Type II secretion system K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004297 361.0
DYD3_k127_5478891_16 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 336.0
DYD3_k127_5478891_17 Uracil phosphoribosyltransferase K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 322.0
DYD3_k127_5478891_18 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 306.0
DYD3_k127_5478891_19 L,D-transpeptidase catalytic domain K16291 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005295 306.0
DYD3_k127_5478891_2 PFAM Type II secretion system protein E K02454 - - 1.797e-210 668.0
DYD3_k127_5478891_20 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001215 292.0
DYD3_k127_5478891_21 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000007069 219.0
DYD3_k127_5478891_22 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000001304 209.0
DYD3_k127_5478891_23 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000001953 208.0
DYD3_k127_5478891_24 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000001093 176.0
DYD3_k127_5478891_25 Cell Wall Hydrolase - - - 0.00000000000000000000000000000000000000000000006302 176.0
DYD3_k127_5478891_26 Cysteine-rich motif following a subset of SET domains K07117 - - 0.0000000000000000000000000000000000000000000003438 173.0
DYD3_k127_5478891_27 fimbrial assembly K02461 - - 0.00000000000000000000000000000000000000000001661 176.0
DYD3_k127_5478891_28 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000002811 167.0
DYD3_k127_5478891_29 PFAM General secretion pathway protein K K02460 - - 0.000000000000000000000000000000000000000009632 167.0
DYD3_k127_5478891_3 transport systems, ATPase components K02056 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 591.0
DYD3_k127_5478891_30 ABC-type transport auxiliary lipoprotein component - - - 0.00000000000000000000000000000001443 134.0
DYD3_k127_5478891_31 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K13584 - - 0.000000000000000000000000003157 119.0
DYD3_k127_5478891_32 General secretion pathway protein H K02457 - - 0.000000000000000000000000005103 122.0
DYD3_k127_5478891_33 Sigma factor PP2C-like phosphatases - - - 0.000000000000000000000000009617 115.0
DYD3_k127_5478891_34 Type II secretion system (T2SS), protein M subtype b K02462 - - 0.000000000000000000000001243 111.0
DYD3_k127_5478891_35 STAS domain - - - 0.00000000000000000000007856 107.0
DYD3_k127_5478891_36 Protein kinase domain - - - 0.0000000000000000001497 104.0
DYD3_k127_5478891_37 Prokaryotic N-terminal methylation motif K02459 - - 0.000000000000000001186 95.0
DYD3_k127_5478891_38 response regulator, receiver - - - 0.00000000000000987 85.0
DYD3_k127_5478891_39 Prokaryotic N-terminal methylation motif K02458 - - 0.000000001312 64.0
DYD3_k127_5478891_4 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002266 573.0
DYD3_k127_5478891_40 - - - - 0.0000003631 61.0
DYD3_k127_5478891_41 - - - - 0.000001619 54.0
DYD3_k127_5478891_42 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000134 44.0
DYD3_k127_5478891_5 Type II and III secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 533.0
DYD3_k127_5478891_6 ammonia-lyase activity K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003359 482.0
DYD3_k127_5478891_7 ABC transporter substrate-binding protein PnrA-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007758 472.0
DYD3_k127_5478891_8 Winged helix DNA-binding domain K09927 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007284 460.0
DYD3_k127_5478891_9 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 450.0
DYD3_k127_5484330_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2319.0
DYD3_k127_5484330_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2252.0
DYD3_k127_5484330_10 Ribosomal protein L7/L12 dimerisation domain K02935 - - 0.0000000000000000000000000000000000000000000000007384 177.0
DYD3_k127_5484330_11 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000000003286 95.0
DYD3_k127_5484330_12 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000006889 83.0
DYD3_k127_5484330_13 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000004457 54.0
DYD3_k127_5484330_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1171.0
DYD3_k127_5484330_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000714 344.0
DYD3_k127_5484330_4 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 312.0
DYD3_k127_5484330_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003181 252.0
DYD3_k127_5484330_6 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000009548 244.0
DYD3_k127_5484330_7 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000002526 231.0
DYD3_k127_5484330_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000109 224.0
DYD3_k127_5484330_9 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000002819 228.0
DYD3_k127_5486760_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 1.108e-245 772.0
DYD3_k127_5486760_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 553.0
DYD3_k127_5486760_10 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000005613 201.0
DYD3_k127_5486760_11 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000001946 196.0
DYD3_k127_5486760_12 - - - - 0.000000000000000000000000000000009565 130.0
DYD3_k127_5486760_13 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000001745 130.0
DYD3_k127_5486760_14 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000007296 87.0
DYD3_k127_5486760_15 - - - - 0.0000001432 56.0
DYD3_k127_5486760_2 Ketopantoate hydroxymethyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 501.0
DYD3_k127_5486760_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 462.0
DYD3_k127_5486760_4 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008747 458.0
DYD3_k127_5486760_5 TRAP dicarboxylate transporter, DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 409.0
DYD3_k127_5486760_6 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 357.0
DYD3_k127_5486760_7 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001121 271.0
DYD3_k127_5486760_8 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004271 268.0
DYD3_k127_5486760_9 Dehydroquinase class II - - - 0.00000000000000000000000000000000000000000000000000000000000000002362 226.0
DYD3_k127_5558726_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1187.0
DYD3_k127_5558726_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1010.0
DYD3_k127_5558726_10 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 437.0
DYD3_k127_5558726_11 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005504 427.0
DYD3_k127_5558726_12 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 430.0
DYD3_k127_5558726_13 permease K03548 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 416.0
DYD3_k127_5558726_14 CYTH - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 414.0
DYD3_k127_5558726_15 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 400.0
DYD3_k127_5558726_16 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 396.0
DYD3_k127_5558726_17 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002298 270.0
DYD3_k127_5558726_18 Uncharacterized protein conserved in bacteria (DUF2066) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005128 287.0
DYD3_k127_5558726_19 COG0593 ATPase involved in DNA replication initiation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002599 262.0
DYD3_k127_5558726_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 9.963e-288 894.0
DYD3_k127_5558726_20 cheY-homologous receiver domain K11443 - - 0.000000000000000000000000000000000000000000000000000000000000000001882 229.0
DYD3_k127_5558726_21 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000001264 200.0
DYD3_k127_5558726_22 Domain of unknown function (DUF1849) - - - 0.00000000000000000000000000000000000000000000000000001703 198.0
DYD3_k127_5558726_23 - - - - 0.0000000000000000000000000000000000000000000000000007661 188.0
DYD3_k127_5558726_24 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000000000000000000000000000001001 194.0
DYD3_k127_5558726_25 Phosphohistidine phosphatase SixA K08296 - - 0.000000000000000000000000000000000000000000000000001733 187.0
DYD3_k127_5558726_26 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000001361 188.0
DYD3_k127_5558726_27 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000000001775 128.0
DYD3_k127_5558726_28 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000004533 126.0
DYD3_k127_5558726_29 Belongs to the bacterial ribosomal protein bL33 family K02913 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000533 98.0
DYD3_k127_5558726_3 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 2.362e-261 827.0
DYD3_k127_5558726_30 - - - - 0.0000000000001786 78.0
DYD3_k127_5558726_4 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 563.0
DYD3_k127_5558726_5 response regulator containing a CheY-like receiver domain and a GGDEF domain K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 560.0
DYD3_k127_5558726_6 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 508.0
DYD3_k127_5558726_7 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 483.0
DYD3_k127_5558726_8 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007092 468.0
DYD3_k127_5558726_9 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 456.0
DYD3_k127_5572221_0 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009564 313.0
DYD3_k127_5572221_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002019 297.0
DYD3_k127_5572221_2 O-Antigen ligase - - - 0.000000000000000000000000003104 126.0
DYD3_k127_5610047_0 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 469.0
DYD3_k127_5610047_1 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 317.0
DYD3_k127_5610047_2 permeases of the drug metabolite transporter (DMT) superfamily K15270 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 313.0
DYD3_k127_5610047_3 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000001848 266.0
DYD3_k127_5610047_4 - - - - 0.00000000000000000000000000001412 124.0
DYD3_k127_5610047_5 - - - - 0.000000000000000007197 91.0
DYD3_k127_5610047_7 spectrin binding K15502,K15503 - - 0.0006407 49.0
DYD3_k127_5613912_0 ABC-type multidrug transport system ATPase and permease K02021 - - 0.0 1028.0
DYD3_k127_5613912_1 COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins K03466 - - 2.112e-293 921.0
DYD3_k127_5613912_10 COG0708 Exonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 376.0
DYD3_k127_5613912_11 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 370.0
DYD3_k127_5613912_12 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009328 358.0
DYD3_k127_5613912_13 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 312.0
DYD3_k127_5613912_14 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 288.0
DYD3_k127_5613912_15 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000189 286.0
DYD3_k127_5613912_16 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001614 250.0
DYD3_k127_5613912_17 Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000001423 224.0
DYD3_k127_5613912_18 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000000000000022 211.0
DYD3_k127_5613912_19 S-adenosyl-L-methionine methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000003144 209.0
DYD3_k127_5613912_2 COG0004 Ammonia permease K03320 - - 1.33e-225 705.0
DYD3_k127_5613912_20 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000001608 205.0
DYD3_k127_5613912_21 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000001252 192.0
DYD3_k127_5613912_22 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000000000000000000001095 193.0
DYD3_k127_5613912_23 S-adenosyl-L-methionine methyltransferase - - - 0.0000000000000000000000000000000000000000000001049 175.0
DYD3_k127_5613912_24 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000003544 146.0
DYD3_k127_5613912_25 - - - - 0.00000000000000000000000000000000002846 140.0
DYD3_k127_5613912_26 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000005879 144.0
DYD3_k127_5613912_27 recombinase activity - - - 0.00000000001292 71.0
DYD3_k127_5613912_3 Glycosyltransferase family 28 C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 574.0
DYD3_k127_5613912_4 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 526.0
DYD3_k127_5613912_5 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 496.0
DYD3_k127_5613912_6 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 426.0
DYD3_k127_5613912_7 COG0436 Aspartate tyrosine aromatic aminotransferase K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 423.0
DYD3_k127_5613912_8 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 391.0
DYD3_k127_5613912_9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007116 380.0
DYD3_k127_5622323_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 531.0
DYD3_k127_5622323_1 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002803 269.0
DYD3_k127_5622323_10 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.00000000000003012 79.0
DYD3_k127_5622323_11 Resolvase - - - 0.000000007859 57.0
DYD3_k127_5622323_2 Ribonuclease E/G family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001608 257.0
DYD3_k127_5622323_3 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002469 256.0
DYD3_k127_5622323_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002283 243.0
DYD3_k127_5622323_5 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000003626 232.0
DYD3_k127_5622323_6 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000835 141.0
DYD3_k127_5622323_7 - - - - 0.000000000000000000000000000000000002408 147.0
DYD3_k127_5622323_8 MotA/TolQ/ExbB proton channel family - - - 0.0000000000000000000000000000001901 134.0
DYD3_k127_5622323_9 - - - - 0.000000000000000000000000004721 120.0
DYD3_k127_5762188_0 symbiont process K00612 - - 2.034e-307 951.0
DYD3_k127_5762188_1 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 3.442e-302 944.0
DYD3_k127_5762188_10 D-ala D-ala ligase C-terminus - - - 0.0000000000000000000000000000000000000000000000000000000584 198.0
DYD3_k127_5762188_11 - - - - 0.000000000000000000000000000000000000000005954 159.0
DYD3_k127_5762188_12 - - - - 0.00000000000000001773 82.0
DYD3_k127_5762188_13 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000005136 66.0
DYD3_k127_5762188_14 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.00000007536 64.0
DYD3_k127_5762188_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 1.067e-216 677.0
DYD3_k127_5762188_3 TRAP-type mannitol chloroaromatic compound transport system large permease component - - - 4.602e-215 681.0
DYD3_k127_5762188_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 3.25e-200 629.0
DYD3_k127_5762188_5 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 469.0
DYD3_k127_5762188_6 Fad dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 451.0
DYD3_k127_5762188_7 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 445.0
DYD3_k127_5762188_8 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002868 288.0
DYD3_k127_5762188_9 COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000000000000008399 218.0
DYD3_k127_5801221_0 N-methylhydantoinase B acetone carboxylase, alpha subunit K01474 - 3.5.2.14 6.896e-290 899.0
DYD3_k127_5801221_1 ABC-type dipeptide transport system periplasmic component K02035 - - 1.862e-239 757.0
DYD3_k127_5801221_10 Isocitrate lyase family K03417 - 4.1.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004621 378.0
DYD3_k127_5801221_11 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 352.0
DYD3_k127_5801221_12 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 338.0
DYD3_k127_5801221_13 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 307.0
DYD3_k127_5801221_14 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001762 283.0
DYD3_k127_5801221_15 UTRA K03710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001068 275.0
DYD3_k127_5801221_16 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000001004 222.0
DYD3_k127_5801221_17 Belongs to the LeuD family K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000002195 204.0
DYD3_k127_5801221_18 FCD - - - 0.0000000000000000000000000000000000000005109 157.0
DYD3_k127_5801221_2 N-methylhydantoinase A acetone carboxylase, beta subunit K01473 - 3.5.2.14 1.441e-205 649.0
DYD3_k127_5801221_3 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 529.0
DYD3_k127_5801221_4 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 484.0
DYD3_k127_5801221_5 Integrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004095 440.0
DYD3_k127_5801221_6 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 442.0
DYD3_k127_5801221_7 Oligopeptide/dipeptide transporter, C-terminal region K02031,K15583,K15587 - 3.6.3.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 423.0
DYD3_k127_5801221_8 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009629 416.0
DYD3_k127_5801221_9 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009541 371.0
DYD3_k127_5817991_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1182.0
DYD3_k127_5817991_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007553 259.0
DYD3_k127_5817991_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001165 247.0
DYD3_k127_5817991_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000003951 64.0
DYD3_k127_5821454_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003298 463.0
DYD3_k127_5821454_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 311.0
DYD3_k127_5821454_2 Pentapeptide repeats (9 copies) - - - 0.000000000000000000000000000000000000000000001779 181.0
DYD3_k127_5821454_3 spore germination - - - 0.000000000000000000000000000000000000000000001844 176.0
DYD3_k127_5821454_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000000009258 165.0
DYD3_k127_5821454_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000002571 110.0
DYD3_k127_5821454_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000002617 112.0
DYD3_k127_5821454_7 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000000000000008822 97.0
DYD3_k127_5822674_0 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.0 1119.0
DYD3_k127_5822674_1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components K06147 - - 8.208e-259 811.0
DYD3_k127_5822674_10 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000001172 218.0
DYD3_k127_5822674_11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000005445 211.0
DYD3_k127_5822674_12 arsenate reductase K00537 - 1.20.4.1 0.000000000000000000000000000000000000000004079 166.0
DYD3_k127_5822674_13 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000004037 145.0
DYD3_k127_5822674_14 FecR protein - - - 0.00000000000000000000000000000000002208 151.0
DYD3_k127_5822674_15 response regulator - - - 0.00000000000000000000000000003457 121.0
DYD3_k127_5822674_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 1.163e-218 696.0
DYD3_k127_5822674_3 Zn-dependent proteases and their inactivated homologs K03592 - - 4.588e-197 625.0
DYD3_k127_5822674_4 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 438.0
DYD3_k127_5822674_5 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008118 372.0
DYD3_k127_5822674_6 sugar phosphatases of the HAD superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 357.0
DYD3_k127_5822674_7 Putative diguanylate phosphodiesterase K13593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 316.0
DYD3_k127_5822674_8 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001188 297.0
DYD3_k127_5822674_9 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000004144 222.0
DYD3_k127_5832721_0 FAD dependent oxidoreductase central domain - - - 0.0 1213.0
DYD3_k127_5832721_1 CHASE2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 448.0
DYD3_k127_5832721_2 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 388.0
DYD3_k127_5832721_3 Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006623 350.0
DYD3_k127_5832721_4 Dimethlysulfonioproprionate lyase - - - 0.00000000000000000000000000000000000000005638 157.0
DYD3_k127_5832721_5 FecR protein - - - 0.0000000000000000000000000000000000000002129 164.0
DYD3_k127_5870567_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.635e-275 853.0
DYD3_k127_5870567_1 Function of homologous gene experimentally demonstrated in an other organism K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 504.0
DYD3_k127_5977019_0 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008814 554.0
DYD3_k127_5977019_1 COG0834 ABC-type amino acid transport signal transduction systems, periplasmic component domain K09969 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000961 523.0
DYD3_k127_5977019_10 O-methyltransferase K00588 - 2.1.1.104 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 296.0
DYD3_k127_5977019_11 CorA-like Mg2+ transporter protein K16074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002297 270.0
DYD3_k127_5977019_12 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.000000000000000000000000000000000000000000000000000000000000000000002121 245.0
DYD3_k127_5977019_13 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.0000000000000000000000000000000000000000000000000000151 199.0
DYD3_k127_5977019_14 PAS domain - - - 0.0000000000000000000000000000000000000001648 155.0
DYD3_k127_5977019_15 ETC complex I subunit K00329 - 1.6.5.3 0.0000000000000000000000000000000000001202 144.0
DYD3_k127_5977019_16 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.00000000000000000000000000000000001424 139.0
DYD3_k127_5977019_17 endoribonuclease L-PSP - - - 0.00000000000000000000000000000000001484 147.0
DYD3_k127_5977019_18 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.00000000000000000000000000000002906 134.0
DYD3_k127_5977019_19 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.0000000000000000000008417 96.0
DYD3_k127_5977019_2 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01760 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 487.0
DYD3_k127_5977019_20 - - - - 0.00000000004234 68.0
DYD3_k127_5977019_21 Flp Fap pilin component K02651 - - 0.0000001918 55.0
DYD3_k127_5977019_23 - - - - 0.0003575 48.0
DYD3_k127_5977019_3 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004988 462.0
DYD3_k127_5977019_4 ABC-type polar amino acid transport system ATPase component K02028,K09972 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009006 441.0
DYD3_k127_5977019_5 ABC-type amino acid transport system permease component K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002846 440.0
DYD3_k127_5977019_6 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 433.0
DYD3_k127_5977019_7 COG4597 ABC-type amino acid transport system, permease component K09970 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 423.0
DYD3_k127_5977019_8 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K03417 - 4.1.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 379.0
DYD3_k127_5977019_9 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 316.0
DYD3_k127_6029030_0 signal transduction histidine kinase K13587 - 2.7.13.3 1.522e-215 700.0
DYD3_k127_6029030_1 The M ring may be actively involved in energy transduction K02409 - - 3.946e-194 620.0
DYD3_k127_6029030_10 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 391.0
DYD3_k127_6029030_11 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009727 400.0
DYD3_k127_6029030_12 Belongs to the flagella basal body rod proteins family K02392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 377.0
DYD3_k127_6029030_13 UDP-N-acetylglucosamine 2-epimerase activity K01791,K18429 GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016787,GO:0016798,GO:0044238,GO:0071704,GO:1901576 3.2.1.184,5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 379.0
DYD3_k127_6029030_14 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 366.0
DYD3_k127_6029030_15 PFAM N-acetylneuraminic acid synthase, N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 363.0
DYD3_k127_6029030_16 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 362.0
DYD3_k127_6029030_17 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006322 331.0
DYD3_k127_6029030_18 MotA/TolQ/ExbB proton channel family K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 314.0
DYD3_k127_6029030_19 Polysaccharide biosynthesis protein K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 310.0
DYD3_k127_6029030_2 FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 565.0
DYD3_k127_6029030_20 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 291.0
DYD3_k127_6029030_21 Belongs to the flagella basal body rod proteins family K02396 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006125 302.0
DYD3_k127_6029030_22 Protein of unknown function DUF115 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006851 285.0
DYD3_k127_6029030_23 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002667 256.0
DYD3_k127_6029030_24 Flagellar biosynthetic protein FliR K02421 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006471 251.0
DYD3_k127_6029030_25 repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004569 265.0
DYD3_k127_6029030_26 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.000000000000000000000000000000000000000000000000000000000000000000008966 245.0
DYD3_k127_6029030_27 Flagellar basal body P-ring biosynthesis protein K02386 - - 0.00000000000000000000000000000000000000000000000000000000000000000001858 244.0
DYD3_k127_6029030_28 COG0784 FOG CheY-like receiver K03413 - - 0.0000000000000000000000000000000000000000000000000000000000000001298 224.0
DYD3_k127_6029030_29 Cytidylyltransferase K18431 - 2.7.7.82 0.0000000000000000000000000000000000000000000000000000000000000001608 229.0
DYD3_k127_6029030_3 FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 546.0
DYD3_k127_6029030_30 Belongs to the flagella basal body rod proteins family K02391 - - 0.0000000000000000000000000000000000000000000000000000000000008834 217.0
DYD3_k127_6029030_31 COG3143 Chemotaxis protein K03414 - - 0.000000000000000000000000000000000000000000000000000000000001124 216.0
DYD3_k127_6029030_32 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.0000000000000000000000000000000000000000000000000000004739 198.0
DYD3_k127_6029030_33 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000000000000000000001168 197.0
DYD3_k127_6029030_34 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000005428 182.0
DYD3_k127_6029030_35 Belongs to the flagella basal body rod proteins family K02388 - - 0.0000000000000000000000000000000000000000000004518 169.0
DYD3_k127_6029030_36 PFAM MgtE intracellular - - - 0.000000000000000000000000000000000000000000002875 173.0
DYD3_k127_6029030_37 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000000000000000000000000000000000000000000007808 171.0
DYD3_k127_6029030_38 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.00000000000000000000000000000000000000001204 156.0
DYD3_k127_6029030_39 COG1317 Flagellar biosynthesis type III secretory pathway protein K02411 - - 0.00000000000000000000000000000000000003154 152.0
DYD3_k127_6029030_4 COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K10943 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 541.0
DYD3_k127_6029030_40 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family - - - 0.0000000000000000000000000000000000003864 148.0
DYD3_k127_6029030_41 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.000000000000000000000000000000000001384 144.0
DYD3_k127_6029030_42 Protein of unknown function (DUF1153) - - - 0.00000000000000000000000000000000000216 141.0
DYD3_k127_6029030_43 Flagellar protein FlbT K06601 - - 0.0000000000000000000000000000000007509 135.0
DYD3_k127_6029030_44 Putative transposase of IS4/5 family (DUF4096) K07492 - - 0.00000000000000000000000000000002158 129.0
DYD3_k127_6029030_45 Chemotaxis MotB protein K02557 - - 0.0000000000000000000000000000002869 135.0
DYD3_k127_6029030_46 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06602 - - 0.0000000000000000000000000000009926 126.0
DYD3_k127_6029030_47 Flagellar biosynthetic protein FliQ K02420 - - 0.000000000000000000000001206 106.0
DYD3_k127_6029030_48 FlhB HrpN YscU SpaS Family K04061 - - 0.000000000000000000000001331 107.0
DYD3_k127_6029030_49 Rod binding protein - - - 0.000000000000000000000002587 106.0
DYD3_k127_6029030_5 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 561.0
DYD3_k127_6029030_50 - - - - 0.000000000000000000000007426 111.0
DYD3_k127_6029030_51 Flagellar hook-length control protein FliK - - - 0.000000000000000000000008999 117.0
DYD3_k127_6029030_52 Class II flagellar assembly regulator - - - 0.00000000000000000000002722 104.0
DYD3_k127_6029030_53 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.0000000000000000000003138 98.0
DYD3_k127_6029030_54 Flagellar hook-basal body K02408 - - 0.000000000000000000006403 96.0
DYD3_k127_6029030_55 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02397 - - 0.000000000000000000009636 106.0
DYD3_k127_6029030_57 Flagellar biosynthesis protein, FliO K02418 - - 0.000000000000000001716 92.0
DYD3_k127_6029030_58 Transposase DDE domain - - - 0.000000000000000002042 84.0
DYD3_k127_6029030_59 - - - - 0.000000000000005276 80.0
DYD3_k127_6029030_6 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 GO:0005575,GO:0005623,GO:0009288,GO:0009425,GO:0042597,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 510.0
DYD3_k127_6029030_7 UDP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 463.0
DYD3_k127_6029030_8 Flagellar hook protein flgE K02390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 424.0
DYD3_k127_6029030_9 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 408.0
DYD3_k127_6053254_0 ABC transporter transmembrane region 2 K17938 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 494.0
DYD3_k127_6053254_1 Zinc-binding dehydrogenase K00001,K19745 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 457.0
DYD3_k127_6053254_10 tetR family' - - - 0.0000000000000000000000000000000000000000000001167 175.0
DYD3_k127_6053254_11 Protein of unknown function (DUF2852) - - - 0.00000000000000000000000000000000000000004613 156.0
DYD3_k127_6053254_12 ABC-type long-chain fatty acid transport system, fused permease and ATPase K17938 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006855,GO:0008150,GO:0015238,GO:0015291,GO:0015638,GO:0015833,GO:0015893,GO:0016020,GO:0016021,GO:0019534,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0042221,GO:0042493,GO:0042884,GO:0042885,GO:0042886,GO:0042887,GO:0042891,GO:0042895,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:1901998,GO:1904680 - 0.0000006864 51.0
DYD3_k127_6053254_2 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 422.0
DYD3_k127_6053254_3 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 368.0
DYD3_k127_6053254_4 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003234 316.0
DYD3_k127_6053254_5 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009397 287.0
DYD3_k127_6053254_6 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009836 269.0
DYD3_k127_6053254_7 COG1247 Sortase and related acyltransferases K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000000008929 217.0
DYD3_k127_6053254_8 COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.00000000000000000000000000000000000000000000000002677 192.0
DYD3_k127_6053254_9 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.000000000000000000000000000000000000000000000001723 178.0
DYD3_k127_606750_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K18661 - - 4.758e-232 731.0
DYD3_k127_606750_1 COG2873 O-acetylhomoserine sulfhydrylase K01740 - 2.5.1.49 1.803e-229 717.0
DYD3_k127_606750_10 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 490.0
DYD3_k127_606750_11 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005531 474.0
DYD3_k127_606750_12 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 475.0
DYD3_k127_606750_13 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005427 471.0
DYD3_k127_606750_14 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 466.0
DYD3_k127_606750_15 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 413.0
DYD3_k127_606750_16 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00651 - 2.3.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 405.0
DYD3_k127_606750_17 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 375.0
DYD3_k127_606750_18 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 366.0
DYD3_k127_606750_19 Enoyl-CoA hydratase/isomerase K01692,K05605 - 3.1.2.4,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 359.0
DYD3_k127_606750_2 Acyl-CoA dehydrogenase, N-terminal domain K00252 - 1.3.8.6 9.635e-226 704.0
DYD3_k127_606750_20 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009047 357.0
DYD3_k127_606750_21 branched-chain amino acid K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 347.0
DYD3_k127_606750_22 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 319.0
DYD3_k127_606750_23 Formate/nitrite transporter K21993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 300.0
DYD3_k127_606750_24 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001221 250.0
DYD3_k127_606750_25 threonine efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000003545 230.0
DYD3_k127_606750_26 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000006331 232.0
DYD3_k127_606750_27 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000001481 216.0
DYD3_k127_606750_28 COG3090 TRAP-type C4-dicarboxylate transport system, small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000005983 214.0
DYD3_k127_606750_29 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000002196 209.0
DYD3_k127_606750_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 1.684e-217 682.0
DYD3_k127_606750_30 ROS/MUCR transcriptional regulator protein - - - 0.000000000000000000000000000000000000000000000000003203 185.0
DYD3_k127_606750_31 Protein of unknown function (DUF3105) - - - 0.00000000000000000000000000000000000000000000002986 177.0
DYD3_k127_606750_32 addiction module antidote protein, HigA family K21498 - - 0.0000000000000000000000000000000000000000000001181 174.0
DYD3_k127_606750_33 - - - - 0.000000000000000000000000000000000001253 142.0
DYD3_k127_606750_34 Chemotaxis phosphatase, CheZ K03414 - - 0.00000000000000000000000000000002749 135.0
DYD3_k127_606750_35 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000002058 129.0
DYD3_k127_606750_36 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.0000000000000000000001913 100.0
DYD3_k127_606750_37 Protoglobin - - - 0.00000000000000001905 90.0
DYD3_k127_606750_38 PAS domain - - - 0.000000000000006385 81.0
DYD3_k127_606750_4 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 625.0
DYD3_k127_606750_40 - - - - 0.00002632 53.0
DYD3_k127_606750_41 LrgB-like family - - - 0.000316 44.0
DYD3_k127_606750_5 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 609.0
DYD3_k127_606750_6 Imidazolonepropionase and related amidohydrolases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004597 563.0
DYD3_k127_606750_7 Malonyl-CoA decarboxylase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 560.0
DYD3_k127_606750_8 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000506 568.0
DYD3_k127_606750_9 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 526.0
DYD3_k127_6083584_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 597.0
DYD3_k127_6083584_1 Adenylate cyclase - - - 0.0002316 45.0
DYD3_k127_6150535_0 ABC-type dipeptide transport system periplasmic component K02035 - - 1.343e-257 803.0
DYD3_k127_6150535_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 5.664e-227 707.0
DYD3_k127_6150535_10 SpoU rRNA Methylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000007604 230.0
DYD3_k127_6150535_11 PFAM adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000004126 245.0
DYD3_k127_6150535_12 invasion associated locus B - - - 0.000000000000000000000000000000000000000000000000001186 190.0
DYD3_k127_6150535_13 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000009422 190.0
DYD3_k127_6150535_14 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000001449 176.0
DYD3_k127_6150535_15 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 - - - 0.00000000000000000000000000000000000000000005894 165.0
DYD3_k127_6150535_16 PFAM FecR protein - - - 0.00000000000000000000005907 106.0
DYD3_k127_6150535_17 Protein of unknown function (DUF3253) - - - 0.000000000000000001046 91.0
DYD3_k127_6150535_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005821 555.0
DYD3_k127_6150535_3 Binding-protein-dependent transport system inner membrane component K02033 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008688 521.0
DYD3_k127_6150535_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 488.0
DYD3_k127_6150535_5 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008198 449.0
DYD3_k127_6150535_6 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 405.0
DYD3_k127_6150535_7 ATPases associated with a variety of cellular activities K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 395.0
DYD3_k127_6150535_8 AAA domain, putative AbiEii toxin, Type IV TA system K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 354.0
DYD3_k127_6150535_9 NnrU protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001236 240.0
DYD3_k127_61542_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 5.651e-245 763.0
DYD3_k127_61542_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 6.424e-237 741.0
DYD3_k127_61542_10 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007303 321.0
DYD3_k127_61542_11 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005125 300.0
DYD3_k127_61542_12 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 298.0
DYD3_k127_61542_13 Protein of unknown function, DUF547 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 296.0
DYD3_k127_61542_14 helix-turn-helix- domain containing protein, AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001193 282.0
DYD3_k127_61542_15 of the double-stranded beta helix - - - 0.00000000000000000000000000000000000000000000000000000000000000005258 227.0
DYD3_k127_61542_16 ChrR Cupin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000001188 222.0
DYD3_k127_61542_17 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000000000000000000000000000000000006263 214.0
DYD3_k127_61542_18 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000000000000000000000000000000002203 181.0
DYD3_k127_61542_19 YHS domain - - - 0.000000000000000000000000000000000000000000000001684 180.0
DYD3_k127_61542_2 III protein, CoA-transferase family K07749 - 2.8.3.16 3.363e-195 616.0
DYD3_k127_61542_20 LysE type translocator - - - 0.000000000000000000000000000000000000000000002394 171.0
DYD3_k127_61542_21 protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000000000000002355 169.0
DYD3_k127_61542_22 - - - - 0.00000000000000000000000000000000000000000009279 166.0
DYD3_k127_61542_23 - - - - 0.000000000000000000000000000000000000000004738 160.0
DYD3_k127_61542_24 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000001002 139.0
DYD3_k127_61542_25 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000002686 134.0
DYD3_k127_61542_27 Sel1-like repeats. K15475 - - 0.00000001214 68.0
DYD3_k127_61542_28 Endonuclease containing a URI domain K07461 - - 0.00000006417 56.0
DYD3_k127_61542_29 CRISPR system CASCADE complex protein CasC K19124 - - 0.00003364 46.0
DYD3_k127_61542_3 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 567.0
DYD3_k127_61542_4 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 503.0
DYD3_k127_61542_5 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01739 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005924 462.0
DYD3_k127_61542_6 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 374.0
DYD3_k127_61542_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 347.0
DYD3_k127_61542_8 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005594 334.0
DYD3_k127_61542_9 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005807 316.0
DYD3_k127_6166260_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0 1662.0
DYD3_k127_6166260_1 CoA binding domain K09181 - - 0.0 1067.0
DYD3_k127_6166260_10 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 585.0
DYD3_k127_6166260_11 protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 586.0
DYD3_k127_6166260_12 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005171 527.0
DYD3_k127_6166260_13 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 524.0
DYD3_k127_6166260_14 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 468.0
DYD3_k127_6166260_15 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007147 454.0
DYD3_k127_6166260_16 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 432.0
DYD3_k127_6166260_17 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 349.0
DYD3_k127_6166260_18 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009854 348.0
DYD3_k127_6166260_19 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 331.0
DYD3_k127_6166260_2 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 4.416e-305 945.0
DYD3_k127_6166260_20 Transposase IS200 like K07491 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005298 319.0
DYD3_k127_6166260_21 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 294.0
DYD3_k127_6166260_22 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004967 294.0
DYD3_k127_6166260_23 fad dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 304.0
DYD3_k127_6166260_24 Acetolactate synthase small K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006035 271.0
DYD3_k127_6166260_25 Alpha/beta hydrolase family K07020 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003235 258.0
DYD3_k127_6166260_26 COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003453 239.0
DYD3_k127_6166260_27 COG0665 Glycine D-amino acid oxidases (deaminating) - - - 0.00000000000000000000000000000000000000000000000000000000000003055 218.0
DYD3_k127_6166260_28 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.0000000000000000000000000000000000000000000000000000000000002429 215.0
DYD3_k127_6166260_29 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000262 210.0
DYD3_k127_6166260_3 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family K00317 - 1.5.8.1,1.5.8.2 3.511e-283 886.0
DYD3_k127_6166260_30 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000007343 215.0
DYD3_k127_6166260_31 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000003441 205.0
DYD3_k127_6166260_32 Uracil DNA glycosylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000157 202.0
DYD3_k127_6166260_33 Cytochrome c-type biogenesis protein K02200 - - 0.00000000000000000000000000000000000000000000000005354 197.0
DYD3_k127_6166260_34 Protein conserved in bacteria K09985 - - 0.000000000000000000000000000000000000000000000000556 180.0
DYD3_k127_6166260_35 - - - - 0.00000000000000000000000000000000000000000000007948 181.0
DYD3_k127_6166260_36 - - - - 0.0000000000000000000000000000000000000000000001227 176.0
DYD3_k127_6166260_37 Phospholipid methyltransferase - - - 0.00000000000000000000000000000000000000000001163 169.0
DYD3_k127_6166260_38 heme binding K03791 - - 0.0000000000000000000000000000000000000001003 161.0
DYD3_k127_6166260_39 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000001434 129.0
DYD3_k127_6166260_4 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 5.071e-221 694.0
DYD3_k127_6166260_40 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.0000000000000002914 80.0
DYD3_k127_6166260_41 Ribbon-helix-helix domain - - - 0.000000000000001218 80.0
DYD3_k127_6166260_42 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000003027 74.0
DYD3_k127_6166260_43 - - - - 0.0000136 50.0
DYD3_k127_6166260_5 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 1.2e-220 694.0
DYD3_k127_6166260_6 COG0457 FOG TPR repeat - - - 4.993e-217 683.0
DYD3_k127_6166260_7 Adenylate and Guanylate cyclase catalytic domain - - - 2.09e-202 646.0
DYD3_k127_6166260_8 Bacterial protein of unknown function (DUF853) K06915 - - 3.795e-199 634.0
DYD3_k127_6166260_9 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 612.0
DYD3_k127_6166840_0 COG4166 ABC-type oligopeptide transport system, periplasmic component K13893 - - 7.062e-274 858.0
DYD3_k127_6166840_1 Belongs to the ABC transporter superfamily K13896 - - 1.081e-249 780.0
DYD3_k127_6166840_10 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 351.0
DYD3_k127_6166840_11 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 337.0
DYD3_k127_6166840_12 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006055 321.0
DYD3_k127_6166840_13 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 315.0
DYD3_k127_6166840_14 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 292.0
DYD3_k127_6166840_15 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000008661 259.0
DYD3_k127_6166840_16 COG3474 Cytochrome c2 K08738 - - 0.0000000000000000000000000000000000000000000003562 184.0
DYD3_k127_6166840_17 Universal stress protein - - - 0.0000000000000000000000000000000000000000006015 162.0
DYD3_k127_6166840_18 Winged helix DNA-binding domain - - - 0.000000000000000000000000000000000009418 140.0
DYD3_k127_6166840_19 Acid phosphatase homologues K19302 - 3.6.1.27 0.0000000000000000000000000001609 129.0
DYD3_k127_6166840_2 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 605.0
DYD3_k127_6166840_20 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.00000000000000000000009098 113.0
DYD3_k127_6166840_21 Sel1-like repeats. K07126,K13582 - - 0.0000001087 60.0
DYD3_k127_6166840_3 COG0471 Di- and tricarboxylate transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 613.0
DYD3_k127_6166840_4 transport system, permease component K13895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008719 577.0
DYD3_k127_6166840_5 binding-protein-dependent transport systems inner membrane component K13894 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0022857,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 514.0
DYD3_k127_6166840_6 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 514.0
DYD3_k127_6166840_7 Prephenate dehydratase K04518 - 4.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 441.0
DYD3_k127_6166840_8 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002008 427.0
DYD3_k127_6166840_9 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 380.0
DYD3_k127_6184378_0 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000372 511.0
DYD3_k127_6184378_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004503 458.0
DYD3_k127_6184378_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007612 371.0
DYD3_k127_6184378_3 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007149 327.0
DYD3_k127_6184378_4 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 321.0
DYD3_k127_6184378_5 hydrolase (HAD superfamily) K01560 - 3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 299.0
DYD3_k127_6184378_6 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 291.0
DYD3_k127_6184378_7 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000000000000000000000001102 218.0
DYD3_k127_6184378_8 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950,K13940 - 2.7.6.3,4.1.2.25 0.000000000000000000000000000000000000000000000000004987 186.0
DYD3_k127_6184378_9 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000000000005295 131.0
DYD3_k127_6204497_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0 1056.0
DYD3_k127_6204497_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 7.515e-316 975.0
DYD3_k127_6204497_10 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000001443 168.0
DYD3_k127_6204497_11 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000001778 150.0
DYD3_k127_6204497_13 - - - - 0.000000000000009408 81.0
DYD3_k127_6204497_14 Resolvase, N terminal domain - - - 0.000000000001666 68.0
DYD3_k127_6204497_15 Family of unknown function (DUF695) - - - 0.000000005217 64.0
DYD3_k127_6204497_2 Glycosyl hydrolases family 15 - - - 2.901e-261 816.0
DYD3_k127_6204497_3 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 587.0
DYD3_k127_6204497_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 344.0
DYD3_k127_6204497_5 PFAM ABC transporter substrate binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001735 265.0
DYD3_k127_6204497_6 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004596 252.0
DYD3_k127_6204497_7 DinB family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002503 235.0
DYD3_k127_6204497_8 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000000000000000000000000000000000000000000000000000004545 226.0
DYD3_k127_6204497_9 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000002849 218.0
DYD3_k127_6360166_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000875 245.0
DYD3_k127_6360166_1 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000001334 181.0
DYD3_k127_6363699_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 2.836e-265 834.0
DYD3_k127_6363699_1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 1.082e-252 794.0
DYD3_k127_6363699_10 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008832 479.0
DYD3_k127_6363699_11 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 465.0
DYD3_k127_6363699_12 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K01784,K03274 - 5.1.3.2,5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006413 474.0
DYD3_k127_6363699_13 NADP-dependent oxidoreductase K00001,K07119 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 456.0
DYD3_k127_6363699_14 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007015 447.0
DYD3_k127_6363699_15 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 439.0
DYD3_k127_6363699_16 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 373.0
DYD3_k127_6363699_17 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 346.0
DYD3_k127_6363699_18 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 336.0
DYD3_k127_6363699_19 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 331.0
DYD3_k127_6363699_2 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 1.643e-237 750.0
DYD3_k127_6363699_20 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 289.0
DYD3_k127_6363699_21 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008792 280.0
DYD3_k127_6363699_22 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07659 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000123 280.0
DYD3_k127_6363699_23 COG0530 Ca2 Na antiporter K07301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000139 282.0
DYD3_k127_6363699_24 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000004161 255.0
DYD3_k127_6363699_25 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001103 246.0
DYD3_k127_6363699_26 COG0314 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.0000000000000000000000000000000000000000000000000000000000000000001461 239.0
DYD3_k127_6363699_27 transcriptional - - - 0.0000000000000000000000000000000000000000000000000000000000000000004265 233.0
DYD3_k127_6363699_28 Aminoacyl-tRNA editing domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000008441 231.0
DYD3_k127_6363699_29 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.000000000000000000000000000000000000000000000000000000000000000004474 232.0
DYD3_k127_6363699_3 N-terminal TM domain of oligopeptide transport permease C K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007452 607.0
DYD3_k127_6363699_30 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000001549 223.0
DYD3_k127_6363699_31 Putative bacterial sensory transduction regulator - - - 0.000000000000000000000000000000000000000000000000000000000003617 212.0
DYD3_k127_6363699_32 Putative tRNA binding domain K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000827 189.0
DYD3_k127_6363699_33 - - - - 0.0000000000000000000000000000000000000000000001784 176.0
DYD3_k127_6363699_34 transcriptional regulator - - - 0.000000000000000000000000000000000000000000001678 173.0
DYD3_k127_6363699_35 Phasin protein - - - 0.0000000000000000000000000000000000000003509 155.0
DYD3_k127_6363699_36 - - - - 0.00000000000000000000000000003438 128.0
DYD3_k127_6363699_37 Domain of unknown function (DUF427) - - - 0.00000000000000000000000008615 111.0
DYD3_k127_6363699_38 protein conserved in bacteria K09806 - - 0.0000000000000000000000005258 109.0
DYD3_k127_6363699_39 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.000000000000000000000002685 118.0
DYD3_k127_6363699_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 552.0
DYD3_k127_6363699_5 Oxidative deamination of D-amino acids K00285 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0008718,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016638,GO:0019478,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046144,GO:0046395,GO:0046416,GO:0046436,GO:0055114,GO:0055130,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 553.0
DYD3_k127_6363699_6 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 548.0
DYD3_k127_6363699_7 Creatinase/Prolidase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 530.0
DYD3_k127_6363699_8 Histidine kinase K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 516.0
DYD3_k127_6363699_9 COG0303 Molybdopterin biosynthesis enzyme K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 503.0
DYD3_k127_6364801_0 Tripartite tricarboxylate transporter family receptor K07795 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 389.0
DYD3_k127_6364801_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006444 392.0
DYD3_k127_6364801_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005048 378.0
DYD3_k127_6364801_3 aminotransferase class I and II K00375 - - 0.0003718 44.0
DYD3_k127_6365250_0 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 3.905e-266 831.0
DYD3_k127_6365250_1 - - - - 0.00000000000000007997 82.0
DYD3_k127_6366424_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15785 - 2.6.1.76 1.73e-239 747.0
DYD3_k127_6366424_1 belongs to the aldehyde dehydrogenase family K00135,K15786 - 1.2.1.16,1.2.1.20,1.2.1.79 1.189e-236 741.0
DYD3_k127_6366424_10 ATPases associated with a variety of cellular activities K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 314.0
DYD3_k127_6366424_11 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001175 259.0
DYD3_k127_6366424_12 belongs to the bacterial solute-binding protein 3 family K02030,K02424,K10022 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009078 253.0
DYD3_k127_6366424_13 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006037 244.0
DYD3_k127_6366424_14 helix_turn_helix ASNC type K15782 - - 0.00000000000000000000000000000000000000000000000000000000000258 220.0
DYD3_k127_6366424_15 Cro/C1-type HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000001987 213.0
DYD3_k127_6366424_16 amino acid ABC transporter K02029 - - 0.000000000000000000000000000000000000000000000000000000002019 217.0
DYD3_k127_6366424_17 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000001366 109.0
DYD3_k127_6366424_2 Tripartite tricarboxylate transporter TctA family - - - 5.02e-198 629.0
DYD3_k127_6366424_3 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 527.0
DYD3_k127_6366424_4 Mandelate Racemase Muconate Lactonizing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 508.0
DYD3_k127_6366424_5 ABC-type polar amino acid transport system ATPase component K02028,K09972 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 417.0
DYD3_k127_6366424_6 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 407.0
DYD3_k127_6366424_7 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 400.0
DYD3_k127_6366424_8 COG0115 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 385.0
DYD3_k127_6366424_9 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 331.0
DYD3_k127_6374102_0 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase UDP-N-acetylglucosamine-1-phosphate transferase K02851,K13007 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007956 312.0
DYD3_k127_6374102_1 Polysaccharide biosynthesis protein K13013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007666 278.0
DYD3_k127_6374102_2 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002359 250.0
DYD3_k127_6416782_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.414e-246 768.0
DYD3_k127_6416782_1 Molecular chaperone. Has ATPase activity K04079 - - 5.223e-233 740.0
DYD3_k127_6416782_10 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 383.0
DYD3_k127_6416782_11 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 320.0
DYD3_k127_6416782_12 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008647 271.0
DYD3_k127_6416782_13 Glutathione S-transferase, C-terminal domain K07393 - 1.8.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002666 282.0
DYD3_k127_6416782_14 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007035 261.0
DYD3_k127_6416782_15 PFAM AzlC family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009615 250.0
DYD3_k127_6416782_16 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000000000000000009411 241.0
DYD3_k127_6416782_17 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000002009 237.0
DYD3_k127_6416782_18 PFAM DoxX family protein K15977 - - 0.00000000000000000000000000000000000000000000004537 173.0
DYD3_k127_6416782_19 Fic/DOC family - - - 0.0000000000000000000000000000000000000000000006163 168.0
DYD3_k127_6416782_2 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 569.0
DYD3_k127_6416782_20 Branched-chain amino acid transport protein (AzlD) - - - 0.000000000000000000000000000004136 123.0
DYD3_k127_6416782_21 domain protein K20276 - - 0.000000000000000000000005495 115.0
DYD3_k127_6416782_22 - - - - 0.0000000000000000000002082 98.0
DYD3_k127_6416782_23 - - - - 0.000000000000000000009675 93.0
DYD3_k127_6416782_3 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 513.0
DYD3_k127_6416782_4 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005773 503.0
DYD3_k127_6416782_5 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 464.0
DYD3_k127_6416782_6 COG3639 ABC-type phosphate phosphonate transport system, permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 432.0
DYD3_k127_6416782_7 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 422.0
DYD3_k127_6416782_8 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 421.0
DYD3_k127_6416782_9 Phosphonate ABC transporter, permease protein PhnE K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 402.0
DYD3_k127_6443540_0 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001183 278.0
DYD3_k127_6443540_1 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000003708 196.0
DYD3_k127_6443540_2 Belongs to the aldehyde dehydrogenase family K00128,K00130 - 1.2.1.3,1.2.1.8 0.0000000000000000000000000001406 116.0
DYD3_k127_6443540_3 Helix-turn-helix domain - - - 0.000000000000000000000003548 105.0
DYD3_k127_6443540_4 - - - - 0.00000001356 61.0
DYD3_k127_6443540_5 - - - - 0.00008974 52.0
DYD3_k127_6513440_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.173e-226 708.0
DYD3_k127_6513440_1 GGDEF domain - - - 1.586e-211 672.0
DYD3_k127_6513440_10 alpha/beta hydrolase fold K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 425.0
DYD3_k127_6513440_11 TIGRFAM acetoacetyl-CoA reductase K00023 - 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 378.0
DYD3_k127_6513440_12 Protein of unknown function (DUF5131) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 330.0
DYD3_k127_6513440_13 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 322.0
DYD3_k127_6513440_14 of the double-stranded beta helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002703 274.0
DYD3_k127_6513440_15 Polyhydroxyalkanoate synthesis repressor PhaR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001284 267.0
DYD3_k127_6513440_16 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007383 264.0
DYD3_k127_6513440_17 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000000000000000000000000000002207 228.0
DYD3_k127_6513440_18 Protein of unknown function (DUF5131) - - - 0.00000000000000000000000000000000000000000001227 174.0
DYD3_k127_6513440_19 NUDIX domain K03574 - 3.6.1.55 0.000000000000000000000000000000000001235 145.0
DYD3_k127_6513440_2 Belongs to the thiolase family K00626 - 2.3.1.9 7.558e-209 654.0
DYD3_k127_6513440_20 - - - - 0.00000000000000006417 81.0
DYD3_k127_6513440_3 MlrC C-terminus - - - 7.412e-199 631.0
DYD3_k127_6513440_4 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 600.0
DYD3_k127_6513440_5 aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 589.0
DYD3_k127_6513440_6 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 576.0
DYD3_k127_6513440_7 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 512.0
DYD3_k127_6513440_8 ABC-type dipeptide transport system periplasmic component K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 489.0
DYD3_k127_6513440_9 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 446.0
DYD3_k127_652201_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1034.0
DYD3_k127_652201_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.495e-307 956.0
DYD3_k127_652201_10 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005649 593.0
DYD3_k127_652201_11 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 522.0
DYD3_k127_652201_12 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 514.0
DYD3_k127_652201_13 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008051 501.0
DYD3_k127_652201_14 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 447.0
DYD3_k127_652201_15 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007829 428.0
DYD3_k127_652201_16 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 426.0
DYD3_k127_652201_17 Protein conserved in bacteria K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 407.0
DYD3_k127_652201_18 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 396.0
DYD3_k127_652201_19 Serine protein kinase K07180 GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006995,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0042594,GO:0043170,GO:0043412,GO:0043562,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005387 377.0
DYD3_k127_652201_2 SpoVR family K06415 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 4.162e-246 770.0
DYD3_k127_652201_20 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 364.0
DYD3_k127_652201_21 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006717 361.0
DYD3_k127_652201_22 glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006131 343.0
DYD3_k127_652201_23 COG0811 Biopolymer transport proteins K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 337.0
DYD3_k127_652201_24 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 330.0
DYD3_k127_652201_25 Phenazine biosynthesis-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 311.0
DYD3_k127_652201_26 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001276 268.0
DYD3_k127_652201_27 L-lactate permease K03303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008982 273.0
DYD3_k127_652201_28 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002235 260.0
DYD3_k127_652201_29 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002696 255.0
DYD3_k127_652201_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 6.309e-240 751.0
DYD3_k127_652201_30 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000007823 234.0
DYD3_k127_652201_31 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000000000000796 212.0
DYD3_k127_652201_32 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000000000003409 207.0
DYD3_k127_652201_33 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000000000001203 203.0
DYD3_k127_652201_34 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000000000000007561 197.0
DYD3_k127_652201_35 Biopolymer transport protein K03559,K03560 - - 0.000000000000000000000000000000000000000000000000000008685 193.0
DYD3_k127_652201_36 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000002166 188.0
DYD3_k127_652201_37 ubiE/COQ5 methyltransferase family K00570 - 2.1.1.17,2.1.1.71 0.000000000000000000000000000000000000000000000167 176.0
DYD3_k127_652201_38 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000009813 171.0
DYD3_k127_652201_39 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000000000166 162.0
DYD3_k127_652201_4 COG0471 Di- and tricarboxylate transporters - - - 6.877e-240 754.0
DYD3_k127_652201_40 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000008049 156.0
DYD3_k127_652201_41 Paraquat-inducible protein A K03808 - - 0.00000000000000000000000000000000000007304 151.0
DYD3_k127_652201_42 thioesterase K07107 - - 0.0000000000000000000000000000000000428 143.0
DYD3_k127_652201_43 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000000000005433 98.0
DYD3_k127_652201_44 PAS domain - - - 0.00000000000000047 85.0
DYD3_k127_652201_45 Domain of unknown function (DUF1127) - - - 0.000001435 54.0
DYD3_k127_652201_5 Involved in the TonB-independent uptake of proteins K03641 - - 4.613e-216 679.0
DYD3_k127_652201_6 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 4.84e-214 670.0
DYD3_k127_652201_7 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 3.703e-195 618.0
DYD3_k127_652201_8 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 603.0
DYD3_k127_652201_9 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 598.0
DYD3_k127_6550499_0 Amidohydrolase family - - - 7.525e-217 682.0
DYD3_k127_6550499_1 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003254 531.0
DYD3_k127_6550499_2 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244,K19743 - 1.4.1.1,1.5.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008461 269.0
DYD3_k127_6550499_3 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000000000000000000001096 188.0
DYD3_k127_6550499_4 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000000000000002813 131.0
DYD3_k127_6552448_0 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 534.0
DYD3_k127_6552448_1 ABC-type spermidine putrescine transport system, permease component I K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007645 444.0
DYD3_k127_6552448_2 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 430.0
DYD3_k127_6552448_3 Binding-protein-dependent transport system inner membrane component K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 381.0
DYD3_k127_6552448_4 Binding-protein-dependent transport system inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 372.0
DYD3_k127_6552448_5 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 351.0
DYD3_k127_6552448_6 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000007562 48.0
DYD3_k127_6552857_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1418.0
DYD3_k127_6552857_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 2.266e-253 816.0
DYD3_k127_6552857_10 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 437.0
DYD3_k127_6552857_11 DeoR C terminal sensor domain K02444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005765 380.0
DYD3_k127_6552857_12 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009646 370.0
DYD3_k127_6552857_13 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008995 336.0
DYD3_k127_6552857_14 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 321.0
DYD3_k127_6552857_15 Binding-protein-dependent transport system inner membrane component K17322 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 314.0
DYD3_k127_6552857_16 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004287 313.0
DYD3_k127_6552857_17 Involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004407 276.0
DYD3_k127_6552857_18 COG2030 Acyl dehydratase K17865 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0022607,GO:0042620,GO:0042621,GO:0043933,GO:0044085,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901576 4.2.1.55 0.00000000000000000000000000000000000000000000000000000000000002925 218.0
DYD3_k127_6552857_19 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.00000000000000000000000000000000000000000000000000000000002716 210.0
DYD3_k127_6552857_2 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 5.871e-217 685.0
DYD3_k127_6552857_20 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000007651 197.0
DYD3_k127_6552857_21 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000141 181.0
DYD3_k127_6552857_22 Protein of unknown function (DUF3035) - - - 0.00000000000000000000000000000000000000000000003142 176.0
DYD3_k127_6552857_23 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.000000000000000000000000000000000000000144 154.0
DYD3_k127_6552857_24 Cupin domain - - - 0.0000000000000000000000000000000000000006062 153.0
DYD3_k127_6552857_25 Protein of unknown function (DUF3775) - - - 0.000000000000000000000000000007313 123.0
DYD3_k127_6552857_26 Methyltransferase domain - - - 0.00000000000000000000000004112 118.0
DYD3_k127_6552857_27 protein containing LysM domain - - - 0.0000000000000000118 98.0
DYD3_k127_6552857_28 COG2183 Transcriptional accessory protein - - - 0.00000000000000522 78.0
DYD3_k127_6552857_29 Sporulation related domain - - - 0.0004885 53.0
DYD3_k127_6552857_3 Adenylate cyclase - - - 9.15e-215 690.0
DYD3_k127_6552857_4 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 589.0
DYD3_k127_6552857_5 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 532.0
DYD3_k127_6552857_6 ATPases associated with a variety of cellular activities K17325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 509.0
DYD3_k127_6552857_7 Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009158 496.0
DYD3_k127_6552857_8 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 458.0
DYD3_k127_6552857_9 ATPases associated with a variety of cellular activities K17324 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 454.0
DYD3_k127_6561425_0 Domain of unknown function (DUF4445) - - - 3.482e-308 954.0
DYD3_k127_6561425_1 CO dehydrogenase/acetyl-CoA synthase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 478.0
DYD3_k127_6561425_2 TIGRFAM phenazine biosynthesis protein PhzF family K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000002488 199.0
DYD3_k127_6610858_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0 1117.0
DYD3_k127_6610858_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009986 320.0
DYD3_k127_6610858_2 Sulfatase-modifying factor enzyme 1 K20333 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 308.0
DYD3_k127_6610858_3 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000000000000000000000000000000000000000000001938 179.0
DYD3_k127_6646309_0 type VI secretion protein K11891 - - 2.007e-202 658.0
DYD3_k127_6646309_1 protein conserved in bacteria K11893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 481.0
DYD3_k127_6646309_2 type VI secretion system OmpA MotB family protein K11892 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 327.0
DYD3_k127_6646309_3 Forkhead associated domain K11894 - - 0.0000000000000000000000000000000000000000000000000006674 196.0
DYD3_k127_6646309_4 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 K11906 - - 0.00000000000000000000000000776 116.0
DYD3_k127_6661926_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01907 - 6.2.1.16 1.222e-298 931.0
DYD3_k127_6661926_1 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 473.0
DYD3_k127_6661926_2 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 398.0
DYD3_k127_6661926_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007145 331.0
DYD3_k127_6661926_4 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005384 317.0
DYD3_k127_6661926_5 Pfam:DUF91 - - - 0.000000000000000000000000000000000000000000000000000000000000000007171 233.0
DYD3_k127_6661926_6 Zincin-like metallopeptidase - - - 0.000000000000000000000000000000000000000000000000000006958 192.0
DYD3_k127_6661926_7 Protein of unknown function (DUF1232) - - - 0.0000000000000000000000000000000001076 138.0
DYD3_k127_6661926_8 DinB family - - - 0.000000000000000000000000000000006906 133.0
DYD3_k127_6661926_9 Glycosyl transferase - - - 0.000000000000000000009533 97.0
DYD3_k127_6669209_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1154.0
DYD3_k127_6669209_1 Nitronate monooxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 479.0
DYD3_k127_6669209_10 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007265 263.0
DYD3_k127_6669209_11 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003363 251.0
DYD3_k127_6669209_12 chorismate mutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004362 255.0
DYD3_k127_6669209_13 Protein of unknown function (DUF1134) - - - 0.000000000000000000000000000000000000000000000000000000000000000001297 232.0
DYD3_k127_6669209_14 DUF218 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000181 229.0
DYD3_k127_6669209_15 Glutathione S-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000009375 225.0
DYD3_k127_6669209_16 TIGRFAM MJ0042 family finger-like protein - - - 0.000000000000000000000000000000000001439 147.0
DYD3_k127_6669209_17 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000006884 77.0
DYD3_k127_6669209_18 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000002675 49.0
DYD3_k127_6669209_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 471.0
DYD3_k127_6669209_3 prephenate dehydrogenase K00220 - 1.3.1.12,1.3.1.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 429.0
DYD3_k127_6669209_4 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 363.0
DYD3_k127_6669209_5 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 349.0
DYD3_k127_6669209_6 cell division ATP-binding protein FtsE K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004767 320.0
DYD3_k127_6669209_7 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 321.0
DYD3_k127_6669209_8 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 307.0
DYD3_k127_6669209_9 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000001735 281.0
DYD3_k127_6678524_0 ABC-type multidrug transport system, ATPase and permease K06147 - - 1.066e-251 789.0
DYD3_k127_6678524_1 COG2873 O-acetylhomoserine sulfhydrylase - - - 1.734e-220 691.0
DYD3_k127_6678524_10 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009475 316.0
DYD3_k127_6678524_11 DeoR C terminal sensor domain K02444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005775 313.0
DYD3_k127_6678524_12 Protein conserved in bacteria K09987 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009534 282.0
DYD3_k127_6678524_13 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001203 279.0
DYD3_k127_6678524_14 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000021 238.0
DYD3_k127_6678524_15 endonuclease exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001715 253.0
DYD3_k127_6678524_16 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000000000000000000000002987 220.0
DYD3_k127_6678524_17 PFAM GCN5-related N-acetyltransferase K00619 - 2.3.1.1 0.000000000000000000000000000000000000000000000000000000001356 210.0
DYD3_k127_6678524_18 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.00000000000000000000000000000000000000000000000000005787 190.0
DYD3_k127_6678524_19 Protein of unknown function (DUF429) - - - 0.00000000000000000000000000000000000000000000000000009434 194.0
DYD3_k127_6678524_2 GMC oxidoreductase K00108 - 1.1.99.1 1.24e-213 676.0
DYD3_k127_6678524_20 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000000000003472 186.0
DYD3_k127_6678524_21 Belongs to the globin family K05916 - 1.14.12.17 0.0000000000000000000000000000000000000003228 154.0
DYD3_k127_6678524_22 Binds the 23S rRNA K02909 - - 0.000000000000000000000000000000000001045 141.0
DYD3_k127_6678524_23 Protein of unknown function (DUF1465) K13592 - - 0.0000000000000000000000000000002862 128.0
DYD3_k127_6678524_24 - - - - 0.0000000000000000000005322 103.0
DYD3_k127_6678524_25 COG2040 Homocysteine selenocysteine methylase (S-methylmethionine-dependent) - - - 0.00000000000000009558 87.0
DYD3_k127_6678524_26 Protein of unknown function (DUF1192) - - - 0.00000000004359 64.0
DYD3_k127_6678524_27 Domain of unknown function (DUF1127) - - - 0.0000009868 53.0
DYD3_k127_6678524_28 Protein of unknown function (DUF429) - - - 0.000001833 53.0
DYD3_k127_6678524_3 ABC-type sugar transport system periplasmic component K02027,K05813 - - 5.605e-203 640.0
DYD3_k127_6678524_4 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 464.0
DYD3_k127_6678524_5 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 447.0
DYD3_k127_6678524_6 COG1175 ABC-type sugar transport systems permease components K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 413.0
DYD3_k127_6678524_7 ABC-type sugar transport system, permease component K05815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 410.0
DYD3_k127_6678524_8 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K05816 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 396.0
DYD3_k127_6678524_9 KR domain K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005086 358.0
DYD3_k127_6686711_0 Aerotolerance regulator N-terminal - - - 3.221e-312 981.0
DYD3_k127_6686711_1 membrane - - - 2.351e-241 762.0
DYD3_k127_6686711_10 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 286.0
DYD3_k127_6686711_11 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007697 267.0
DYD3_k127_6686711_12 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001984 259.0
DYD3_k127_6686711_13 Protein of unknown function (DUF1285) K09986 - - 0.0000000000000000000000000000000000000000000000000000000000000000248 229.0
DYD3_k127_6686711_14 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000000000000000001178 219.0
DYD3_k127_6686711_15 Protein of unknown function (DUF559) - - - 0.000000000000000000000000000000002156 132.0
DYD3_k127_6686711_16 - - - - 0.0000478 49.0
DYD3_k127_6686711_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 2.728e-212 670.0
DYD3_k127_6686711_3 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006329 554.0
DYD3_k127_6686711_4 ATPase family associated with various cellular activities (AAA) K03924 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 497.0
DYD3_k127_6686711_5 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008635 486.0
DYD3_k127_6686711_6 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 - 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 456.0
DYD3_k127_6686711_7 poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009659 366.0
DYD3_k127_6686711_8 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 340.0
DYD3_k127_6686711_9 Cytochrome C1 family K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 306.0
DYD3_k127_6696801_0 L-cysteine cystine lyase K04127,K11325 - 5.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000389 369.0
DYD3_k127_6696801_1 Pentapeptide repeats (9 copies) - - - 0.00000000000000000000000000000000000000000000000000001748 196.0
DYD3_k127_6696801_2 PFAM Integrase catalytic region - - - 0.000000000000000005881 83.0
DYD3_k127_6696801_3 - - - - 0.00001565 51.0
DYD3_k127_6703449_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 0.0 1009.0
DYD3_k127_6703449_1 AMP-binding enzyme C-terminal domain K00666 - - 2.495e-265 826.0
DYD3_k127_6703449_10 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 433.0
DYD3_k127_6703449_11 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 408.0
DYD3_k127_6703449_12 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 381.0
DYD3_k127_6703449_13 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 379.0
DYD3_k127_6703449_14 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 331.0
DYD3_k127_6703449_15 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 314.0
DYD3_k127_6703449_16 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001525 281.0
DYD3_k127_6703449_17 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000493 282.0
DYD3_k127_6703449_18 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001506 275.0
DYD3_k127_6703449_19 C4-dicarboxylate transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006903 270.0
DYD3_k127_6703449_2 COG1960 Acyl-CoA dehydrogenases K20035 - - 8.119e-238 754.0
DYD3_k127_6703449_20 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000003668 246.0
DYD3_k127_6703449_21 Diguanylate cyclase, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000184 226.0
DYD3_k127_6703449_22 - - - - 0.00000000000000000000000000000000000000000000000000000001755 205.0
DYD3_k127_6703449_23 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000000000000000116 182.0
DYD3_k127_6703449_24 Putative lumazine-binding - - - 0.000000000000000000000000000000000000000000000001026 177.0
DYD3_k127_6703449_25 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.000000000000000000000000000000000009102 150.0
DYD3_k127_6703449_26 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000001394 143.0
DYD3_k127_6703449_27 protein conserved in bacteria K09790 - - 0.00000000000000000000000001964 114.0
DYD3_k127_6703449_28 PFAM conserved - - - 0.00000000000000000000001106 107.0
DYD3_k127_6703449_29 - - - - 0.00000000000000000003905 95.0
DYD3_k127_6703449_3 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 1.602e-236 743.0
DYD3_k127_6703449_30 Protein of unknown function (DUF465) - - - 0.000000000000000006624 85.0
DYD3_k127_6703449_31 Protein of unknown function (DUF465) - - - 0.000000007847 58.0
DYD3_k127_6703449_34 Domain of unknown function (DUF4169) - - - 0.0002179 51.0
DYD3_k127_6703449_4 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 6.141e-219 690.0
DYD3_k127_6703449_5 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 593.0
DYD3_k127_6703449_6 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 517.0
DYD3_k127_6703449_7 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008552 503.0
DYD3_k127_6703449_8 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 498.0
DYD3_k127_6703449_9 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 444.0
DYD3_k127_6717932_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.095e-224 708.0
DYD3_k127_6717932_1 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 501.0
DYD3_k127_6717932_2 Polysaccharide biosynthesis protein K13013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 496.0
DYD3_k127_6717932_3 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004334 355.0
DYD3_k127_6717932_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000003431 169.0
DYD3_k127_6717932_5 Dehydrogenase K15371 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0008150,GO:0008152,GO:0016491,GO:0016638,GO:0016639,GO:0055114 1.4.1.2 0.000000000000000000000000000000000000001334 149.0
DYD3_k127_6717932_6 Belongs to the UPF0145 family - - - 0.00000000000000000000000000000000004432 136.0
DYD3_k127_6720493_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1349.0
DYD3_k127_6720493_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.269e-318 981.0
DYD3_k127_6720493_10 Tryptophan halogenase K14266 - 1.14.19.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000281 505.0
DYD3_k127_6720493_11 type I secretion outer membrane protein, TolC K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 469.0
DYD3_k127_6720493_12 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 429.0
DYD3_k127_6720493_13 Protein of unknown function (DUF815) K06923 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 423.0
DYD3_k127_6720493_14 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 391.0
DYD3_k127_6720493_15 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 385.0
DYD3_k127_6720493_16 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 385.0
DYD3_k127_6720493_17 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 366.0
DYD3_k127_6720493_18 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006583 366.0
DYD3_k127_6720493_19 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008797 330.0
DYD3_k127_6720493_2 Arginyl-tRNA synthetase K01887 - 6.1.1.19 6.285e-265 826.0
DYD3_k127_6720493_20 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 319.0
DYD3_k127_6720493_21 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007762 324.0
DYD3_k127_6720493_22 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 299.0
DYD3_k127_6720493_23 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007166 294.0
DYD3_k127_6720493_24 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 292.0
DYD3_k127_6720493_25 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 304.0
DYD3_k127_6720493_26 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005066 287.0
DYD3_k127_6720493_27 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001445 283.0
DYD3_k127_6720493_28 COG2518 Protein-L-isoaspartate carboxylmethyltransferase K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000001082 246.0
DYD3_k127_6720493_29 Phytoene squalene synthetase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000766 246.0
DYD3_k127_6720493_3 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 1.419e-217 685.0
DYD3_k127_6720493_30 Nucleoside 2-deoxyribosyltransferase YtoQ - - - 0.000000000000000000000000000000000000000000000000000000000000000002377 230.0
DYD3_k127_6720493_31 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000001016 213.0
DYD3_k127_6720493_32 chemotaxis protein K03414 - - 0.000000000000000000000000000000000000000000000000000000001047 209.0
DYD3_k127_6720493_33 Cupin domain - - - 0.00000000000000000000000000000000000000000000000003022 181.0
DYD3_k127_6720493_34 chain release factor K15034 - - 0.00000000000000000000000000000000000000000000000456 177.0
DYD3_k127_6720493_35 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000673 171.0
DYD3_k127_6720493_36 Preprotein translocase subunit YajC K03210 - - 0.0000000000000000000000000000000000000007319 153.0
DYD3_k127_6720493_37 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000002348 150.0
DYD3_k127_6720493_38 Belongs to the HesB IscA family K15724 - - 0.000000000000000000000000000000000003239 140.0
DYD3_k127_6720493_39 Sporulation related domain - - - 0.000000000000000000000000000000001693 143.0
DYD3_k127_6720493_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.368e-213 674.0
DYD3_k127_6720493_40 Cytochrome c - - - 0.000000000000000000000000000000004287 135.0
DYD3_k127_6720493_41 - K08086,K09991 - - 0.000000000000000000000000001134 122.0
DYD3_k127_6720493_42 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 GO:0003674,GO:0005215 - 0.000000000000000000000000001412 117.0
DYD3_k127_6720493_43 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000003314 115.0
DYD3_k127_6720493_44 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000000003101 98.0
DYD3_k127_6720493_46 - - - - 0.000007657 57.0
DYD3_k127_6720493_47 HEAT repeat - - - 0.00001251 57.0
DYD3_k127_6720493_49 Kelch motif - - - 0.00001695 57.0
DYD3_k127_6720493_5 Elongator protein 3 MiaB NifB - - - 1.23e-209 660.0
DYD3_k127_6720493_50 PFAM Sel1 domain protein repeat-containing protein K07126 - - 0.00004143 54.0
DYD3_k127_6720493_6 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009829 589.0
DYD3_k127_6720493_7 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 542.0
DYD3_k127_6720493_8 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 529.0
DYD3_k127_6720493_9 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009031 517.0
DYD3_k127_6728780_0 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001,K14446 - 1.1.1.1,1.3.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 432.0
DYD3_k127_6728780_1 COG1960 Acyl-CoA dehydrogenases K14448 - 1.3.8.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008358 293.0
DYD3_k127_6762534_0 Adenylate cyclase K01768 - 4.6.1.1 1.262e-286 889.0
DYD3_k127_6762534_1 4Fe-4S binding domain - - - 9.442e-277 869.0
DYD3_k127_6762534_10 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 369.0
DYD3_k127_6762534_11 Sulfate tungstate uptake family ABC transporter, periplasmic substrate-binding protein K05772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 373.0
DYD3_k127_6762534_12 short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 361.0
DYD3_k127_6762534_13 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007274 363.0
DYD3_k127_6762534_14 PFAM Integral membrane protein TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 355.0
DYD3_k127_6762534_15 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004766 355.0
DYD3_k127_6762534_16 ammonia monooxygenase K07120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 359.0
DYD3_k127_6762534_17 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 346.0
DYD3_k127_6762534_18 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 346.0
DYD3_k127_6762534_19 Transcriptional regulator K03566 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 336.0
DYD3_k127_6762534_2 Sodium:alanine symporter family K03310 - - 4.465e-219 689.0
DYD3_k127_6762534_20 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008648 335.0
DYD3_k127_6762534_21 COG0530 Ca2 Na antiporter K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 332.0
DYD3_k127_6762534_22 Polycystin cation channel K08714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007144 310.0
DYD3_k127_6762534_23 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 289.0
DYD3_k127_6762534_24 ABC-type tungstate transport system, periplasmic component K05773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 284.0
DYD3_k127_6762534_25 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007253 268.0
DYD3_k127_6762534_27 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000005853 229.0
DYD3_k127_6762534_28 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000002043 227.0
DYD3_k127_6762534_29 helix_turn_helix ASNC type - - - 0.00000000000000000000000000000000000000000000000000000000002004 209.0
DYD3_k127_6762534_3 RimK-like ATPgrasp N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 571.0
DYD3_k127_6762534_30 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000004987 219.0
DYD3_k127_6762534_31 - - - - 0.0000000000000000000000000000000000000000000000000000003935 198.0
DYD3_k127_6762534_32 PFAM SapC family protein - - - 0.0000000000000000000000000000000000000000000000000005614 194.0
DYD3_k127_6762534_33 - - - - 0.000000000000000000000000000000000000000000000001121 186.0
DYD3_k127_6762534_34 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000001071 175.0
DYD3_k127_6762534_35 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000001008 182.0
DYD3_k127_6762534_36 Helix-turn-helix domain - - - 0.00000000000000000001508 93.0
DYD3_k127_6762534_37 to Saccharomyces cerevisiae CAJ1 (YER048C) - GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006457,GO:0006605,GO:0006625,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016043,GO:0016558,GO:0017038,GO:0030544,GO:0031072,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044424,GO:0044464,GO:0044743,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0072662,GO:0072663,GO:0090150,GO:0090151 - 0.0000000000673 69.0
DYD3_k127_6762534_4 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 482.0
DYD3_k127_6762534_5 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 486.0
DYD3_k127_6762534_6 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004214 481.0
DYD3_k127_6762534_7 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 464.0
DYD3_k127_6762534_8 PFAM Glucose Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 459.0
DYD3_k127_6762534_9 Peptidase_C39 like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005617 422.0
DYD3_k127_6763578_0 involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 297.0
DYD3_k127_6763578_1 PFAM Eukaryotic-type carbonic anhydrase K01674 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000001443 241.0
DYD3_k127_6763578_2 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000001084 224.0
DYD3_k127_6763578_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.000000000000000000000000000000001783 147.0
DYD3_k127_6763578_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000001919 102.0
DYD3_k127_6763578_5 tetratricopeptide repeat - - - 0.00000000683 68.0
DYD3_k127_67862_0 Transposase DDE domain K07481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000386 281.0
DYD3_k127_67862_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000001896 153.0
DYD3_k127_67862_2 Sodium/calcium exchanger protein K07301 - - 0.00000000000000000001328 93.0
DYD3_k127_6808292_0 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006816 589.0
DYD3_k127_6808292_1 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000548 373.0
DYD3_k127_6808292_2 SnoaL-like domain - - - 0.000000000000008379 74.0
DYD3_k127_6815764_0 Ectoine utilization K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 480.0
DYD3_k127_6815764_1 ABC transporter permease K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 339.0
DYD3_k127_6815764_2 ABC transporter (Permease) K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 327.0
DYD3_k127_6815764_3 Ectoine utilization protein EutA K01799 - 5.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 293.0
DYD3_k127_6815764_4 ornithine cyclodeaminase K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000002658 242.0
DYD3_k127_6829915_0 CoA binding domain - - - 8.145e-256 818.0
DYD3_k127_6829915_1 ABC-type dipeptide transport system periplasmic component K02035 - - 9.437e-240 750.0
DYD3_k127_6829915_10 LysR substrate binding domain K21645 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002219 270.0
DYD3_k127_6829915_11 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000196 276.0
DYD3_k127_6829915_12 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000005831 220.0
DYD3_k127_6829915_13 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000002765 192.0
DYD3_k127_6829915_14 alginic acid biosynthetic process - - - 0.00000000000000000000000000000000000000005657 166.0
DYD3_k127_6829915_15 Protein of unknown function (DUF559) - - - 0.0000000000000000000000000000000001042 136.0
DYD3_k127_6829915_16 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000004869 88.0
DYD3_k127_6829915_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain - - - 4.426e-235 736.0
DYD3_k127_6829915_3 Acyl-CoA dehydrogenase, C-terminal domain - - - 7.406e-209 665.0
DYD3_k127_6829915_4 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 524.0
DYD3_k127_6829915_5 Protein of unknown function (DUF2817) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002805 500.0
DYD3_k127_6829915_6 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 484.0
DYD3_k127_6829915_7 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 440.0
DYD3_k127_6829915_8 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 451.0
DYD3_k127_6829915_9 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006447 395.0
DYD3_k127_6842639_0 FAD dependent oxidoreductase K00244 - 1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 584.0
DYD3_k127_6842639_1 N-methylhydantoinase A acetone carboxylase, beta subunit K01473 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 351.0
DYD3_k127_6842639_2 In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2 K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000000000559 272.0
DYD3_k127_6861167_0 DNA helicase K03657 - 3.6.4.12 4.767e-290 915.0
DYD3_k127_6861167_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 5.808e-271 852.0
DYD3_k127_6861167_10 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 552.0
DYD3_k127_6861167_11 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 512.0
DYD3_k127_6861167_12 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 475.0
DYD3_k127_6861167_13 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 469.0
DYD3_k127_6861167_14 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006049 427.0
DYD3_k127_6861167_15 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006952 397.0
DYD3_k127_6861167_16 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 406.0
DYD3_k127_6861167_17 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004905 388.0
DYD3_k127_6861167_18 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 379.0
DYD3_k127_6861167_19 Belongs to the D-alanine--D-alanine ligase family K00075,K01921 - 1.3.1.98,6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 387.0
DYD3_k127_6861167_2 aminopeptidase K01262 - 3.4.11.9 3.18e-237 748.0
DYD3_k127_6861167_20 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 354.0
DYD3_k127_6861167_21 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 298.0
DYD3_k127_6861167_22 Sodium Bile acid symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 293.0
DYD3_k127_6861167_23 Cell division protein FtsQ K03589 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003043 268.0
DYD3_k127_6861167_24 ribosomal protein L11 K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005054 264.0
DYD3_k127_6861167_25 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001139 237.0
DYD3_k127_6861167_26 Acetyltransferase (GNAT) domain K00657 - 2.3.1.57 0.00000000000000000000000000000000000000000000000000000002787 208.0
DYD3_k127_6861167_27 Pentapeptide repeats (9 copies) - - - 0.0000000000000000000000000000000000000000000000001719 183.0
DYD3_k127_6861167_28 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000215 172.0
DYD3_k127_6861167_29 - - - - 0.0000000000000000000000000000002529 128.0
DYD3_k127_6861167_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 1.252e-211 674.0
DYD3_k127_6861167_30 Dimethlysulfonioproprionate lyase - - - 0.00000000000000000000001998 108.0
DYD3_k127_6861167_31 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000002527 91.0
DYD3_k127_6861167_32 Protein of unknown function (DUF3916) - - - 0.000000000000001286 84.0
DYD3_k127_6861167_33 - - - - 0.00000000000001774 80.0
DYD3_k127_6861167_34 Cupin 2, conserved barrel domain protein - - - 0.000000000001173 72.0
DYD3_k127_6861167_36 Belongs to the MraZ family K03925 - - 0.0000000007024 63.0
DYD3_k127_6861167_4 Voltage gated chloride channel K03281 - - 1.516e-208 664.0
DYD3_k127_6861167_5 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 6.056e-201 652.0
DYD3_k127_6861167_6 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006652 606.0
DYD3_k127_6861167_7 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007778 591.0
DYD3_k127_6861167_8 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 582.0
DYD3_k127_6861167_9 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000292 563.0
DYD3_k127_6863541_0 Belongs to the TPP enzyme family K03852 - 2.3.3.15 2.944e-208 657.0
DYD3_k127_6863541_1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000888 464.0
DYD3_k127_6863541_2 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000002831 253.0
DYD3_k127_6863541_3 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000001969 168.0
DYD3_k127_6864510_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 3.64e-247 775.0
DYD3_k127_6864510_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 612.0
DYD3_k127_6864510_2 Pfam:Kce - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 364.0
DYD3_k127_6864510_3 NUDIX domain K00949 - 2.7.6.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005382 325.0
DYD3_k127_6864510_4 signal transduction histidine kinase K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004186 312.0
DYD3_k127_6864510_5 Putative 2OG-Fe(II) oxygenase - - - 0.00000000000000000000000000000000000000000000001915 181.0
DYD3_k127_6864510_6 - - - - 0.000000000000000000000003289 106.0
DYD3_k127_6864510_7 Immunity protein 27 - - - 0.00000000000000000001405 94.0
DYD3_k127_6864510_8 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000007854 58.0
DYD3_k127_6872833_0 Cobaltochelatase CobS subunit N terminal K09882 - 6.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 578.0
DYD3_k127_6872833_1 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 566.0
DYD3_k127_6872833_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004187 388.0
DYD3_k127_6872833_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 325.0
DYD3_k127_6872833_4 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000007704 242.0
DYD3_k127_6872833_5 MFS_1 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000004377 243.0
DYD3_k127_6872833_6 Esterase-like activity of phytase - - - 0.00000000000000000000000000000000000000000000000000000000000000007883 235.0
DYD3_k127_6872833_7 DnaJ molecular chaperone homology domain - - - 0.00000000000000000000000000000000000000000000000000000002141 205.0
DYD3_k127_6872833_8 Belongs to the BolA IbaG family K05527 GO:0008150,GO:0008360,GO:0022603,GO:0022604,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008 - 0.0000000000000000000000000000000226 130.0
DYD3_k127_6872833_9 CHASE2 domain - - - 0.00000000000000000000000000002684 134.0
DYD3_k127_6896567_0 Protein of unknown function (DUF1116) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 535.0
DYD3_k127_6896567_1 transcriptional regulator - - - 0.0000000000000000002291 92.0
DYD3_k127_6903328_0 FAD dependent oxidoreductase central domain - - - 0.0 1171.0
DYD3_k127_6903328_1 chorismate binding enzyme K01665,K03342 - 2.6.1.85,4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 599.0
DYD3_k127_6903328_2 transcriptional regulator K17736 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 336.0
DYD3_k127_6903328_3 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K16165 - 3.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 308.0
DYD3_k127_6903328_4 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001199 272.0
DYD3_k127_6903328_5 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000001503 178.0
DYD3_k127_6954022_0 COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases K02230 - 6.6.1.2 0.0 1811.0
DYD3_k127_6954022_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 1.163e-206 655.0
DYD3_k127_6954022_10 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 385.0
DYD3_k127_6954022_11 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029,K21147 - 2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 366.0
DYD3_k127_6954022_12 COG1587 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 337.0
DYD3_k127_6954022_13 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 313.0
DYD3_k127_6954022_14 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001982 254.0
DYD3_k127_6954022_15 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000006733 230.0
DYD3_k127_6954022_16 helix_turn_helix ASNC type - - - 0.0000000000000000000000000000000000000000000000000000000000000004617 230.0
DYD3_k127_6954022_17 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000005192 230.0
DYD3_k127_6954022_18 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.0000000000000000000000000000000000000000000000000000007916 202.0
DYD3_k127_6954022_19 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000000000000000000000005413 194.0
DYD3_k127_6954022_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 562.0
DYD3_k127_6954022_20 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000043 170.0
DYD3_k127_6954022_21 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000008669 126.0
DYD3_k127_6954022_22 Protein conserved in bacteria K09780 - - 0.00000000000000000000000000007287 118.0
DYD3_k127_6954022_24 - - - - 0.00000000000000000000000006825 111.0
DYD3_k127_6954022_25 - - - - 0.000000000000000000001403 97.0
DYD3_k127_6954022_26 Endoribonuclease L-PSP - - - 0.000000000000000000312 102.0
DYD3_k127_6954022_27 Cytochrome D1 heme domain - - - 0.0000000000000000006573 100.0
DYD3_k127_6954022_28 - - - - 0.0000000003659 73.0
DYD3_k127_6954022_29 tail specific protease - - - 0.000000001744 68.0
DYD3_k127_6954022_3 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 473.0
DYD3_k127_6954022_31 - - - - 0.0000002782 62.0
DYD3_k127_6954022_4 Cobalamin synthesis protein cobW C-terminal domain K02234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 480.0
DYD3_k127_6954022_5 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 463.0
DYD3_k127_6954022_6 Sugar (and other) transporter K07552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008133 439.0
DYD3_k127_6954022_7 HemY protein N-terminus K02498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000783 424.0
DYD3_k127_6954022_8 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009734 407.0
DYD3_k127_6954022_9 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 397.0
DYD3_k127_6972358_0 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 3.103e-240 746.0
DYD3_k127_6972358_1 WYL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 302.0
DYD3_k127_6972358_2 Mechanosensitive ion channel K03442 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022607,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0055082,GO:0055085,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 306.0
DYD3_k127_6972358_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K09565 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000008005 252.0
DYD3_k127_6972358_4 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000006318 227.0
DYD3_k127_6972358_5 Peptidase family S58 - - - 0.00000000000004175 73.0
DYD3_k127_6972358_6 Domain of unknown function (DUF1127) - - - 0.00005706 49.0
DYD3_k127_6972358_7 Cytochrome C' - - - 0.0008038 46.0
DYD3_k127_7001228_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1047.0
DYD3_k127_7001228_1 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000000000001028 183.0
DYD3_k127_7001228_2 - - - - 0.000000000000000000000000000000000000000000006237 172.0
DYD3_k127_7001228_3 Phasin protein - - - 0.0003824 50.0
DYD3_k127_7041616_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001541 267.0
DYD3_k127_7041616_1 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000008123 128.0
DYD3_k127_7041616_2 - - - - 0.000000000000000000000000004271 122.0
DYD3_k127_7041616_5 pilus assembly protein PilP K02665 - - 0.0003379 51.0
DYD3_k127_7041699_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1472.0
DYD3_k127_7041699_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000002952 184.0
DYD3_k127_7045108_0 Belongs to the UPF0276 family K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 381.0
DYD3_k127_7045108_1 Putative DNA-binding domain K09929 - - 0.00000000000000000000000000000000000000000000000000001113 201.0
DYD3_k127_7045108_2 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000006388 159.0
DYD3_k127_7045108_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000004911 137.0
DYD3_k127_7046104_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 3.585e-196 617.0
DYD3_k127_7046104_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 477.0
DYD3_k127_7051876_0 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1857.0
DYD3_k127_7051876_1 Heat shock 70 kDa protein K04043 - - 0.0 1027.0
DYD3_k127_7051876_10 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 356.0
DYD3_k127_7051876_11 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000776 357.0
DYD3_k127_7051876_12 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 337.0
DYD3_k127_7051876_13 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 286.0
DYD3_k127_7051876_14 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 290.0
DYD3_k127_7051876_15 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001064 256.0
DYD3_k127_7051876_16 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000001477 229.0
DYD3_k127_7051876_17 oxidoreductase activity K20274,K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000005374 234.0
DYD3_k127_7051876_18 YbaK prolyl-tRNA synthetase K19055 - - 0.000000000000000000000000000000000000000000000000000000000000001542 223.0
DYD3_k127_7051876_19 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000002861 210.0
DYD3_k127_7051876_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 548.0
DYD3_k127_7051876_20 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000001657 218.0
DYD3_k127_7051876_21 periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000000000004529 192.0
DYD3_k127_7051876_22 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000000000000000001061 190.0
DYD3_k127_7051876_23 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000000002162 144.0
DYD3_k127_7051876_24 - - - - 0.00000000000000000002642 102.0
DYD3_k127_7051876_26 basal body P-ring K02386 - - 0.00009787 45.0
DYD3_k127_7051876_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002621 507.0
DYD3_k127_7051876_4 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 507.0
DYD3_k127_7051876_5 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 493.0
DYD3_k127_7051876_6 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 495.0
DYD3_k127_7051876_7 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 474.0
DYD3_k127_7051876_8 Domain of unknown function (DUF1848) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004341 394.0
DYD3_k127_7051876_9 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 381.0
DYD3_k127_7100418_0 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 2.314e-280 884.0
DYD3_k127_7100418_1 dehydratase K01685,K01708 - 4.2.1.42,4.2.1.7 9.088e-212 668.0
DYD3_k127_7100418_10 Fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 310.0
DYD3_k127_7100418_11 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008749 285.0
DYD3_k127_7100418_12 XdhC Rossmann domain K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000274 278.0
DYD3_k127_7100418_13 Serine aminopeptidase, S33 K06889 - - 0.0000000000000000000000000000000000000000000000000000000007529 211.0
DYD3_k127_7100418_14 DMSO reductase anchor subunit (DmsC) K21309 - - 0.0000000000000000000000000000000000000000000000000006925 189.0
DYD3_k127_7100418_15 XdhC and CoxI family - - - 0.0000000000000000000000000000000000000000000005365 168.0
DYD3_k127_7100418_16 Polymer-forming cytoskeletal - - - 0.000000000000000000001173 101.0
DYD3_k127_7100418_17 Putative 2OG-Fe(II) oxygenase - - - 0.000000006531 65.0
DYD3_k127_7100418_2 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003234 582.0
DYD3_k127_7100418_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 454.0
DYD3_k127_7100418_4 Carbon-nitrogen hydrolase K01431 - 3.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 416.0
DYD3_k127_7100418_5 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 402.0
DYD3_k127_7100418_6 HlyD family secretion protein K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007825 408.0
DYD3_k127_7100418_7 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 394.0
DYD3_k127_7100418_8 VWA domain containing CoxE-like protein K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 361.0
DYD3_k127_7100418_9 COG1136 ABC-type antimicrobial peptide transport system ATPase component K02003,K05685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 340.0
DYD3_k127_7114136_0 NADH-ubiquinone oxidoreductase chain 49kDa - - - 6.085e-247 772.0
DYD3_k127_7114136_1 ABC transporter substrate-binding protein - - - 1.096e-229 721.0
DYD3_k127_7114136_2 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 489.0
DYD3_k127_7114136_3 Belongs to the mandelate racemase muconate lactonizing enzyme family K02549,K19802,K21617 GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 4.2.1.113,5.1.1.20,5.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 473.0
DYD3_k127_7114136_4 Helix-turn-helix domain, rpiR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009177 327.0
DYD3_k127_7114136_5 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007271 278.0
DYD3_k127_7114136_6 Asparaginase glutaminase K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000005233 263.0
DYD3_k127_7114136_7 Integrase - - - 0.00000000005176 67.0
DYD3_k127_713883_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 2.616e-245 762.0
DYD3_k127_713883_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 441.0
DYD3_k127_713883_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005707 441.0
DYD3_k127_713883_3 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 389.0
DYD3_k127_713883_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709 352.0
DYD3_k127_713883_5 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000207 245.0
DYD3_k127_713883_6 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000007535 198.0
DYD3_k127_713883_7 - - - - 0.0000000000000000000000000000000000000000009191 162.0
DYD3_k127_721370_0 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.0 1060.0
DYD3_k127_721370_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.331e-284 893.0
DYD3_k127_721370_10 Phospholipid N-methyltransferase K00570 - 2.1.1.17,2.1.1.71 0.000000000000000000000000000000000000001146 158.0
DYD3_k127_721370_11 ATP synthase delta (OSCP) subunit K02113 - - 0.000000002387 62.0
DYD3_k127_721370_2 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 4.414e-216 679.0
DYD3_k127_721370_3 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 513.0
DYD3_k127_721370_4 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005266 378.0
DYD3_k127_721370_5 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 348.0
DYD3_k127_721370_6 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003806 346.0
DYD3_k127_721370_7 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006898 255.0
DYD3_k127_721370_8 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000001157 199.0
DYD3_k127_721370_9 protein conserved in bacteria K09921 - - 0.000000000000000000000000000000000000000008072 163.0
DYD3_k127_722302_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002819 261.0
DYD3_k127_722302_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000003517 216.0
DYD3_k127_722302_2 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000663 156.0
DYD3_k127_722302_4 - - - - 0.0000000001939 67.0
DYD3_k127_77140_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 1.681e-264 822.0
DYD3_k127_77140_1 COG0768 cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 8.528e-249 781.0
DYD3_k127_77140_2 Rod shape-determining protein MreB K03569 - - 1.995e-202 634.0
DYD3_k127_77140_3 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005953 321.0
DYD3_k127_77140_4 shape-determining protein K03571 - - 0.00000000000000000000000000000000000000004403 158.0
DYD3_k127_77140_5 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000002539 154.0
DYD3_k127_77140_6 Methionine biosynthesis protein MetW - - - 0.000000000000000000000002118 113.0
DYD3_k127_77140_7 Domain of unknown function (DUF5060) - - - 0.00000000000000002806 95.0
DYD3_k127_77140_8 Hydrolases of the alpha beta superfamily K06889 - - 0.0001232 53.0
DYD3_k127_777266_0 transcriptional activator domain - - - 0.0000000000000000000000000000000000000000000000000145 207.0
DYD3_k127_777266_1 response regulator, receiver - - - 0.00000000000000000000000000000000000006762 162.0
DYD3_k127_777266_2 DDE superfamily endonuclease - - - 0.00000000000000000000000000002062 118.0
DYD3_k127_807140_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 576.0
DYD3_k127_807140_1 COG1925 Phosphotransferase system, HPr-related proteins K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006808,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0044424,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702 - 0.00000000000000000000000001365 111.0
DYD3_k127_807140_2 SnoaL-like domain K06893 - - 0.0000000000000000000001261 102.0
DYD3_k127_81895_0 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 394.0
DYD3_k127_81895_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002345 287.0
DYD3_k127_81895_2 - - - - 0.00000000000000000000000000000000000000000000000000000000006206 213.0
DYD3_k127_81895_3 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000597 109.0
DYD3_k127_81895_4 membrane protein (homolog of Drosophila rhomboid) - - - 0.0000000000000000017 93.0
DYD3_k127_81895_5 - - - - 0.00000000000000000578 90.0
DYD3_k127_81895_6 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000001416 52.0
DYD3_k127_81895_7 - - - - 0.00003009 56.0
DYD3_k127_81895_8 Belongs to the peptidase M10A family K06128,K07995 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009986,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0022411,GO:0030198,GO:0034769,GO:0043062,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071711,GO:0071840,GO:0140096,GO:1901564 3.1.1.5 0.0001954 53.0
DYD3_k127_81895_9 Type II secretory pathway component PulC K02452 - - 0.0005214 50.0
DYD3_k127_831372_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 8.26e-228 711.0
DYD3_k127_831372_1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 1.235e-217 681.0
DYD3_k127_831372_10 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000003684 235.0
DYD3_k127_831372_11 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000418 230.0
DYD3_k127_831372_12 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000000000001199 220.0
DYD3_k127_831372_13 structural constituent of ribosome K02879 - - 0.00000000000000000000000000000000000000000000000000000000000003186 217.0
DYD3_k127_831372_14 binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000000000007169 214.0
DYD3_k127_831372_15 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000272 155.0
DYD3_k127_831372_16 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000000000000000008197 155.0
DYD3_k127_831372_17 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000005543 93.0
DYD3_k127_831372_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000813 593.0
DYD3_k127_831372_3 Belongs to the peptidase S1C family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 524.0
DYD3_k127_831372_4 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 421.0
DYD3_k127_831372_5 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003744 386.0
DYD3_k127_831372_6 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 353.0
DYD3_k127_831372_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 346.0
DYD3_k127_831372_8 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 284.0
DYD3_k127_831372_9 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002768 241.0
DYD3_k127_861043_0 ABC-type multidrug transport system, ATPase and permease K06147,K11085 - - 9.622e-232 735.0
DYD3_k127_861043_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006987 583.0
DYD3_k127_861043_10 Protein of unknown function (DUF559) - - - 0.0007936 44.0
DYD3_k127_861043_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 364.0
DYD3_k127_861043_3 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 343.0
DYD3_k127_861043_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 290.0
DYD3_k127_861043_5 COG1560 Lauroyl myristoyl acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000000006125 266.0
DYD3_k127_861043_6 COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003827 257.0
DYD3_k127_861043_7 protein conserved in bacteria K09778 - - 0.00000000000000000000000000000000000000000000000000000000002421 214.0
DYD3_k127_861043_8 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000003368 184.0
DYD3_k127_861043_9 PFAM Sporulation domain protein - - - 0.0000000000002377 81.0
DYD3_k127_868501_0 AMP-binding enzyme C-terminal domain K00666 - - 1.056e-257 805.0
DYD3_k127_868501_1 Hydantoinase/oxoprolinase - - - 7.405e-232 738.0
DYD3_k127_868501_10 Acyclic terpene utilisation family protein AtuA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008936 515.0
DYD3_k127_868501_11 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 494.0
DYD3_k127_868501_12 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K00261,K00262 - 1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 492.0
DYD3_k127_868501_13 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 478.0
DYD3_k127_868501_14 2-oxoacid dehydrogenases acyltransferase (catalytic domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 459.0
DYD3_k127_868501_15 Dehydrogenase E1 component K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 454.0
DYD3_k127_868501_16 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008399 444.0
DYD3_k127_868501_17 ATPases associated with a variety of cellular activities K05816,K10112 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 433.0
DYD3_k127_868501_18 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 426.0
DYD3_k127_868501_19 Pyridoxal-dependent decarboxylase conserved domain K01634 - 4.1.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009271 403.0
DYD3_k127_868501_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 8.245e-223 696.0
DYD3_k127_868501_20 PFAM binding-protein-dependent transport systems inner membrane component K02025,K10118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 391.0
DYD3_k127_868501_21 PFAM binding-protein-dependent transport systems inner membrane component K02026,K10119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 366.0
DYD3_k127_868501_22 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 349.0
DYD3_k127_868501_23 Integrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 333.0
DYD3_k127_868501_24 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 320.0
DYD3_k127_868501_25 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 316.0
DYD3_k127_868501_26 KR domain K00034 - 1.1.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003857 296.0
DYD3_k127_868501_27 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 293.0
DYD3_k127_868501_28 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 294.0
DYD3_k127_868501_29 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009016 282.0
DYD3_k127_868501_3 Hydantoinase B/oxoprolinase - - - 2.462e-217 689.0
DYD3_k127_868501_30 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001378 265.0
DYD3_k127_868501_31 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003506 256.0
DYD3_k127_868501_32 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004463 254.0
DYD3_k127_868501_33 FCD - - - 0.000000000000000000000000000000000000000000000000000000000000003992 225.0
DYD3_k127_868501_34 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000001176 208.0
DYD3_k127_868501_35 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000007411 194.0
DYD3_k127_868501_36 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000001235 182.0
DYD3_k127_868501_37 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000005847 181.0
DYD3_k127_868501_38 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000001095 155.0
DYD3_k127_868501_39 - - - - 0.000000000000000000000000000000000001045 141.0
DYD3_k127_868501_4 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 3.319e-217 694.0
DYD3_k127_868501_40 FCD - - - 0.000000000000000000000000000000000003524 156.0
DYD3_k127_868501_41 Helix-turn-helix domain K03710 - - 0.000000000000000000000000000001865 131.0
DYD3_k127_868501_42 DDE domain K07498 - - 0.0000000000000000000000001156 109.0
DYD3_k127_868501_43 Amidase K01426 - 3.5.1.4 0.000000000000000000000001988 106.0
DYD3_k127_868501_44 Trap-type c4-dicarboxylate transport system, small permease component - - - 0.0000000000000000004868 94.0
DYD3_k127_868501_45 Integrase - - - 0.0000000003967 63.0
DYD3_k127_868501_46 PFAM Stem cell self-renewal protein Piwi - - - 0.0000004286 57.0
DYD3_k127_868501_47 Integrase - - - 0.000006353 50.0
DYD3_k127_868501_5 Uncharacterized protein conserved in bacteria (DUF2090) K03338 - 2.7.1.92 5.105e-214 682.0
DYD3_k127_868501_6 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 2.554e-207 660.0
DYD3_k127_868501_7 Aminotransferase class-III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000266 590.0
DYD3_k127_868501_8 COG0076 Glutamate decarboxylase and related PLP-dependent proteins K01634 - 4.1.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 578.0
DYD3_k127_868501_9 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 514.0
DYD3_k127_88264_0 Mg2 and Co2 transporter CorB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008926 554.0
DYD3_k127_88264_1 Belongs to the HpcH HpaI aldolase family K08691 - 4.1.3.24,4.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 522.0
DYD3_k127_88264_10 Belongs to the BolA IbaG family K05527 - - 0.00000000000000000000000000000003739 130.0
DYD3_k127_88264_11 Ribbon-helix-helix domain - - - 0.0000000000000000000002115 103.0
DYD3_k127_88264_12 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.0000000000000221 74.0
DYD3_k127_88264_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006682 491.0
DYD3_k127_88264_3 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005345 453.0
DYD3_k127_88264_4 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K15598 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 444.0
DYD3_k127_88264_5 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 369.0
DYD3_k127_88264_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 307.0
DYD3_k127_88264_7 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000000000001813 237.0
DYD3_k127_88264_8 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000000000000000000000000000000000000000004272 228.0
DYD3_k127_88264_9 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000000000003523 194.0
DYD3_k127_92186_0 Methionine synthase K00548 - 2.1.1.13 0.0 1476.0
DYD3_k127_92186_1 PFAM NADH Ubiquinone plastoquinone (complex I) K05568 - - 2.247e-217 688.0
DYD3_k127_92186_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006982 425.0
DYD3_k127_92186_3 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 337.0
DYD3_k127_92186_4 Belongs to the UPF0758 family K03630 GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006203 324.0
DYD3_k127_92186_5 Belongs to the SfsA family K06206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 298.0
DYD3_k127_92186_6 Proton-conducting membrane transporter K00341,K05568 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001266 280.0
DYD3_k127_92186_7 Histidine kinase response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000001638 252.0
DYD3_k127_92186_8 - - - - 0.00000000000001411 78.0
DYD3_k127_92186_9 - - - - 0.0000000000000615 75.0
DYD3_k127_929914_0 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 380.0
DYD3_k127_929914_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768,K03320 - 4.6.1.1 0.0000000000000000000000000000000000000000000009205 187.0
DYD3_k127_953209_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.0 1176.0
DYD3_k127_953209_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 2.224e-203 645.0
DYD3_k127_953209_10 Putative transmembrane protein (Alph_Pro_TM) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001113 279.0
DYD3_k127_953209_11 Protein of unknown function (DUF1194) - - - 0.000000000000000000000000000000000000000000000000000000000000002583 229.0
DYD3_k127_953209_12 universal stress protein UspA and related nucleotide-binding - - - 0.0000000000000000000000000000000000000000000000000000000002654 211.0
DYD3_k127_953209_13 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000001527 139.0
DYD3_k127_953209_14 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000000001001 121.0
DYD3_k127_953209_15 - - - - 0.0000000000000000000000000002375 121.0
DYD3_k127_953209_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006675 586.0
DYD3_k127_953209_3 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 524.0
DYD3_k127_953209_4 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 475.0
DYD3_k127_953209_5 This protein is involved in the repair of mismatches in DNA K03555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 451.0
DYD3_k127_953209_6 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008243 437.0
DYD3_k127_953209_7 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 421.0
DYD3_k127_953209_8 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 357.0
DYD3_k127_953209_9 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 327.0
DYD3_k127_956411_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 594.0
DYD3_k127_956411_1 Protein of unknown function (FYDLN_acid) - - - 0.000000000000000006068 88.0
DYD3_k127_956411_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000007081 75.0
DYD3_k127_986973_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.0 1087.0
DYD3_k127_986973_1 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 432.0
DYD3_k127_986973_2 AsmA family K07289 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 333.0
DYD3_k127_986973_3 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000002329 246.0
DYD3_k127_986973_4 Rdx family K07401 - - 0.00000000000000000000000000000000009536 136.0
DYD3_k127_986973_5 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000008335 125.0
DYD3_k127_986973_6 Domain of unknown function (DUF4389) - - - 0.00000000000000002447 89.0