Overview

ID MAG00953
Name DYD3_bin.22
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order Micropepsales
Family Micropepsaceae
Genus SZUA-430
Species
Assembly information
Completeness (%) 70.96
Contamination (%) 2.89
GC content (%) 64.0
N50 (bp) 3,581
Genome size (bp) 2,621,072

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2858

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1005462_0 HNH endonuclease - - - 0.000000000000000000000000000000000000774 148.0
DYD3_k127_1005462_1 Histidine kinase - - - 0.000000000000000000000000008859 114.0
DYD3_k127_1005462_2 SURF1-like protein K14998 - - 0.0000000000000003117 81.0
DYD3_k127_100716_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007815 550.0
DYD3_k127_100716_1 enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000001199 220.0
DYD3_k127_100716_2 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003908,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006282,GO:0006304,GO:0006305,GO:0006306,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009008,GO:0009314,GO:0009605,GO:0009628,GO:0009636,GO:0009888,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010212,GO:0010243,GO:0010604,GO:0010941,GO:0014070,GO:0016740,GO:0016741,GO:0016765,GO:0019219,GO:0019222,GO:0030154,GO:0030162,GO:0030855,GO:0030879,GO:0031323,GO:0031325,GO:0031667,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0033273,GO:0033554,GO:0034599,GO:0034641,GO:0035510,GO:0042221,GO:0042493,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044728,GO:0045471,GO:0045739,GO:0045935,GO:0046483,GO:0046677,GO:0046872,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051246,GO:0051336,GO:0051593,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0060644,GO:0061180,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071310,GO:0071407,GO:0071478,GO:0071479,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097305,GO:0104004,GO:0140097,GO:1901360,GO:1901363,GO:1901698,GO:1901700,GO:2000116,GO:2000779,GO:2000781,GO:2001020,GO:2001022 2.1.1.63 0.0000000000000000000000000000000000000031 155.0
DYD3_k127_100716_3 SnoaL-like domain - - - 0.00000000000000000001602 102.0
DYD3_k127_1013438_0 Bacterial extracellular solute-binding proteins, family 3 K09969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 496.0
DYD3_k127_1013438_1 PFAM Cys Met metabolism PLP-dependent enzyme K01760 GO:0000096,GO:0000098,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004121,GO:0006082,GO:0006090,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006520,GO:0006534,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009093,GO:0009987,GO:0016054,GO:0016829,GO:0016846,GO:0019448,GO:0019450,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044273,GO:0044281,GO:0044282,GO:0046395,GO:0046439,GO:0046483,GO:0047804,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1990414 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 499.0
DYD3_k127_1013438_2 Binding-protein-dependent transport system inner membrane component K09970 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 395.0
DYD3_k127_1013438_3 carboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 362.0
DYD3_k127_1013438_4 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0008150,GO:0040007 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000003532 148.0
DYD3_k127_1013438_5 Protein of unknown function (DUF559) - - - 0.00000000000000000000204 99.0
DYD3_k127_1019576_0 Protein of unknown function (DUF2855) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 409.0
DYD3_k127_1019576_1 Class I peptide chain release factor K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.0000000000000000000000000000000000000000000001677 171.0
DYD3_k127_1019576_2 NMT1-like family K07080 - - 0.000000000000000003679 86.0
DYD3_k127_1031568_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 472.0
DYD3_k127_1031568_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006728 400.0
DYD3_k127_1031568_2 MAPEG family - - - 0.000000000000000000000001933 107.0
DYD3_k127_1035653_0 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 434.0
DYD3_k127_1035653_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 318.0
DYD3_k127_1035653_2 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 306.0
DYD3_k127_1035653_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000004338 87.0
DYD3_k127_1035653_4 - - - - 0.000000000007145 78.0
DYD3_k127_1037703_0 P-aminobenzoate N-oxygenase AurF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007162 578.0
DYD3_k127_1037703_1 protein histidine kinase activity K07716,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000001454 270.0
DYD3_k127_1037703_2 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.000000000000000000000000000000000000000000001229 166.0
DYD3_k127_1037703_3 Diguanylate cyclase - - - 0.000000000000000009231 98.0
DYD3_k127_1037703_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000001123 61.0
DYD3_k127_1037703_5 - - - - 0.0006033 49.0
DYD3_k127_1040744_0 peptidase K07386 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 549.0
DYD3_k127_1040744_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.0000000000001586 79.0
DYD3_k127_1047751_0 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000009461 192.0
DYD3_k127_1047751_1 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.0000000000000000000000000000002447 140.0
DYD3_k127_1047751_2 - - - - 0.0000000000000000000000007126 112.0
DYD3_k127_1047751_3 Belongs to the type-B carboxylesterase lipase family K03929 - - 0.000000000009105 68.0
DYD3_k127_1072908_0 lysine biosynthetic process via aminoadipic acid - - - 3.116e-204 658.0
DYD3_k127_1072908_1 Amidohydrolase - - - 0.00000000000000000000000008078 112.0
DYD3_k127_1082744_0 poly-beta-hydroxybutyrate polymerase K03821 - - 3.003e-232 734.0
DYD3_k127_1082744_1 Signal transduction protein - - - 0.0000000000000000000000000000000000000000001108 163.0
DYD3_k127_1087872_0 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 GO:0003674,GO:0003824,GO:0003849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009611,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0050896,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.54 6.951e-233 730.0
DYD3_k127_1087872_1 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000002616 261.0
DYD3_k127_1091959_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 2.487e-235 736.0
DYD3_k127_1091959_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000002384 150.0
DYD3_k127_1096808_0 PFAM Prenyltransferase squalene oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009199 461.0
DYD3_k127_1096808_1 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005381 320.0
DYD3_k127_1096808_2 ATP-grasp - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003433 283.0
DYD3_k127_1096808_3 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005559 281.0
DYD3_k127_1096808_4 asparagine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001956 256.0
DYD3_k127_1107860_0 Nitrite and sulphite reductase 4Fe-4S domain K00381 - 1.8.1.2 1.02e-264 823.0
DYD3_k127_1124250_0 CHAP domain - - - 0.000000000000000000000000000000000000156 150.0
DYD3_k127_1124250_1 CHAP domain - - - 0.000000000000000000000000000000000000165 149.0
DYD3_k127_1124250_2 Hpt domain protein - - - 0.00001289 53.0
DYD3_k127_1153264_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000001319 248.0
DYD3_k127_1153264_1 NusA-like KH domain K02600 - - 0.00000000000000000000000000000000000000000000000000000005092 200.0
DYD3_k127_1153264_2 nucleic-acid-binding protein implicated in transcription termination K07742 - - 0.000000000000000000000000000000000000000000000118 176.0
DYD3_k127_1178297_0 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 432.0
DYD3_k127_1178297_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 367.0
DYD3_k127_1178297_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005261 342.0
DYD3_k127_1178297_3 transcriptional regulator - - - 0.0000000000000000000000000000003397 131.0
DYD3_k127_1178297_4 ArgK protein K07588 - - 0.00005417 53.0
DYD3_k127_11869_0 Domain of unknown function (DUF1287) K09974 - - 0.000000000000000000000000000000000000000000000000000000000000000001282 235.0
DYD3_k127_11869_1 NAD-specific glutamate dehydrogenase K15371 - 1.4.1.2 0.000000000000000000000000000000000000000000000000004821 190.0
DYD3_k127_11869_2 Exonuclease - - - 0.0000000000000000000000000000000347 137.0
DYD3_k127_1196000_0 C-4 methylsterol oxidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 383.0
DYD3_k127_1196000_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 366.0
DYD3_k127_1196000_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000001614 155.0
DYD3_k127_1196000_3 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000009972 83.0
DYD3_k127_120609_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 478.0
DYD3_k127_120609_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01928,K01929,K15792 - 6.3.2.10,6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 460.0
DYD3_k127_120609_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000002521 80.0
DYD3_k127_1212158_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 4.56e-288 892.0
DYD3_k127_1212158_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000002336 74.0
DYD3_k127_121218_0 PFAM beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 342.0
DYD3_k127_121218_1 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000001195 220.0
DYD3_k127_121218_2 nitrate reductase, gamma subunit K00374 - 1.7.5.1 0.00000000000000002456 81.0
DYD3_k127_1212504_0 PFAM FAD linked oxidase domain protein K00803 - 2.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 566.0
DYD3_k127_1212504_1 phosphinothricin N-acetyltransferase activity - - - 0.0000006247 53.0
DYD3_k127_1214027_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 426.0
DYD3_k127_1214027_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004492 355.0
DYD3_k127_1214027_2 Restriction endonuclease K07448 - - 0.000001887 59.0
DYD3_k127_1216782_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 6.359e-297 925.0
DYD3_k127_1216782_1 Sigma-54 interaction domain K10943 - - 8.369e-204 643.0
DYD3_k127_1216782_2 FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009453 503.0
DYD3_k127_1216782_3 The M ring may be actively involved in energy transduction K02409 - - 0.0000000000000000000000000000000000002507 146.0
DYD3_k127_1216782_4 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.000000000000000000000000000000000008713 138.0
DYD3_k127_1216782_5 Flagellar assembly protein FliH K02411 - - 0.000000000000000000000000000648 126.0
DYD3_k127_1216782_6 DoxX K15977 - - 0.0000000000000000000001725 102.0
DYD3_k127_1218033_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 321.0
DYD3_k127_1218033_1 glutathione transferase activity K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003839 278.0
DYD3_k127_1218033_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000000000009046 146.0
DYD3_k127_1218033_3 - - - - 0.0000000000000000000002045 105.0
DYD3_k127_1224704_0 PFAM alpha beta hydrolase fold K01253,K08253 - 2.7.10.2,3.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008638 456.0
DYD3_k127_1224704_1 D-alanine--D-alanine ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002071 404.0
DYD3_k127_1224704_2 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 303.0
DYD3_k127_1224704_3 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003421 287.0
DYD3_k127_1224704_4 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009157 260.0
DYD3_k127_1224704_5 Chemotaxis phosphatase, CheZ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003475 255.0
DYD3_k127_1224704_6 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000005802 195.0
DYD3_k127_1224704_7 And related - - - 0.0000000000000000000000000000000000000000000002947 171.0
DYD3_k127_1224704_8 Domain of unknown function (DUF4281) - - - 0.0000000000000000000000000000000000000000002788 164.0
DYD3_k127_1224704_9 SNARE associated Golgi protein - - - 0.0000000000000000000000000000003321 133.0
DYD3_k127_1228136_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 477.0
DYD3_k127_1228136_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000002174 230.0
DYD3_k127_1228136_2 Bacterial regulatory protein, arsR family - - - 0.0000000000000000000000000000000000000000000000000000000004093 206.0
DYD3_k127_1228136_3 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000001725 114.0
DYD3_k127_1228136_4 Domain of unknown function (DUF4166) - - - 0.00000000000000000000000000522 118.0
DYD3_k127_1231061_0 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000128 175.0
DYD3_k127_1231061_1 Bacterial regulatory proteins, tetR family K16137 - - 0.000000000000000000000000000000000000000001191 163.0
DYD3_k127_1231061_2 multidrug resistance efflux pump K03543 - - 0.00000000000000000000000000000000000006281 154.0
DYD3_k127_1232158_0 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 521.0
DYD3_k127_1232158_1 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005179 372.0
DYD3_k127_1232158_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000009011 188.0
DYD3_k127_1232158_3 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000004696 90.0
DYD3_k127_1238674_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1026.0
DYD3_k127_1243982_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 493.0
DYD3_k127_1243982_1 O-Antigen ligase - - - 0.000000000000000000000000000000000000000000000000001514 200.0
DYD3_k127_126529_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000001835 195.0
DYD3_k127_126529_1 Peptidase S9 prolyl oligopeptidase active site - - - 0.0000000000000000000005981 105.0
DYD3_k127_1266385_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001609 245.0
DYD3_k127_1266385_1 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000008639 245.0
DYD3_k127_1266385_2 PFAM NUDIX hydrolase K03574 GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000009828 224.0
DYD3_k127_1266385_3 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000001169 187.0
DYD3_k127_1266385_4 Flp Fap pilin component K02651 - - 0.00002496 49.0
DYD3_k127_1268209_0 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000001123 208.0
DYD3_k127_1268209_1 CAAX prenyl protease N-terminal, five membrane helices K06013 - 3.4.24.84 0.000000000000000000000001942 108.0
DYD3_k127_1268209_2 Protein of unknown function (DUF1674) - - - 0.000000000000149 72.0
DYD3_k127_1285872_0 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000003366 250.0
DYD3_k127_1285872_1 Tetrahydrodipicolinate N-succinyltransferase N-terminal K00674 - 2.3.1.117 0.00000000000000000000427 104.0
DYD3_k127_1285872_2 COG2202 FOG PAS PAC domain - - - 0.0000005342 57.0
DYD3_k127_1286284_0 Vitamin B12 dependent methionine synthase, activation domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 2.793e-215 684.0
DYD3_k127_1286284_1 Methylenetetrahydrofolate reductase K00297 GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 407.0
DYD3_k127_1286284_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 371.0
DYD3_k127_1287809_0 COG1596 Periplasmic protein involved in polysaccharide export K01991 - - 0.0000000000000000000000000000000000000000002211 168.0
DYD3_k127_1287809_1 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.000000000007392 66.0
DYD3_k127_1295497_0 Sigma-54 interaction domain K13599 - - 3.722e-208 656.0
DYD3_k127_1295497_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K13598 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 361.0
DYD3_k127_1295497_2 Amino-transferase class IV K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.00000000000000000000000004422 120.0
DYD3_k127_1299605_0 Protein of unknown function (DUF979) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 377.0
DYD3_k127_1299605_1 Protein of unknown function (DUF969) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004825 295.0
DYD3_k127_1299605_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000005026 223.0
DYD3_k127_1299605_3 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000002267 211.0
DYD3_k127_1299605_4 Radical SAM - - - 0.000001301 50.0
DYD3_k127_1301348_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 330.0
DYD3_k127_1301348_1 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008068 279.0
DYD3_k127_1301348_2 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000466 120.0
DYD3_k127_1301348_3 COG1668 ABC-type Na efflux pump, permease component K01992 - - 0.000000000000000000000000000009132 135.0
DYD3_k127_1301708_0 Transposase, Mutator family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003751 276.0
DYD3_k127_1301708_1 helix_turn_helix, Lux Regulon - - - 0.00000000009686 72.0
DYD3_k127_130402_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 5.507e-268 838.0
DYD3_k127_130402_1 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 355.0
DYD3_k127_1308598_0 enoyl-CoA hydratase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 415.0
DYD3_k127_1308598_1 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001059 279.0
DYD3_k127_1308598_2 His Kinase A (phosphoacceptor) domain K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008631 291.0
DYD3_k127_1308598_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000002306 89.0
DYD3_k127_1312427_0 ABC transporter C-terminal domain K15738 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363 - 3.665e-236 744.0
DYD3_k127_1312427_1 Protein of unknown function (DUF3604) - - - 3.008e-201 642.0
DYD3_k127_1326810_0 Putative peptidoglycan binding domain - - - 0.00000000000000000000000000004691 132.0
DYD3_k127_1326810_1 Putative peptidoglycan binding domain - - - 0.00000000000000001955 86.0
DYD3_k127_1326810_2 - - - - 0.0000000005923 67.0
DYD3_k127_1327323_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.15 7.663e-220 688.0
DYD3_k127_1327323_1 Lipoprotein releasing system transmembrane protein K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 382.0
DYD3_k127_1329476_0 AcrB/AcrD/AcrF family - - - 6.224e-211 676.0
DYD3_k127_1329476_1 Mur ligase family, catalytic domain K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000955 307.0
DYD3_k127_1329476_2 Mediates zinc uptake. May also transport other divalent cations K07238 GO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006826,GO:0006828,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015086,GO:0015087,GO:0015093,GO:0015318,GO:0015684,GO:0015691,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0034755,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070574,GO:0070838,GO:0071421,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1903874 - 0.00000000000000000000000001075 113.0
DYD3_k127_1331081_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007369 349.0
DYD3_k127_1331081_1 FR47-like protein - - - 0.0000000000000000000000000000000000000000000002469 174.0
DYD3_k127_1344678_0 Metallo-beta-lactamase superfamily K12574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 366.0
DYD3_k127_1344678_1 Flavoprotein involved in K transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009587 343.0
DYD3_k127_1346121_0 HELICc2 K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 346.0
DYD3_k127_1346121_1 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005184 288.0
DYD3_k127_1346121_2 PFAM Mo-dependent nitrogenase - - - 0.00000000000000000000000000000000000000001791 157.0
DYD3_k127_1346121_3 Phosphohistidine phosphatase SixA K08296 - - 0.000000000000000000000000000000000000187 150.0
DYD3_k127_1346121_4 FR47-like protein - - - 0.000000000000000000004727 96.0
DYD3_k127_1352711_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 574.0
DYD3_k127_1352711_1 PFAM class II aldolase adducin family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 364.0
DYD3_k127_141721_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 5.349e-234 738.0
DYD3_k127_141721_1 helicase K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000001839 228.0
DYD3_k127_141721_2 - - - - 0.000001114 55.0
DYD3_k127_1418826_0 Aminotransferase class-III K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 592.0
DYD3_k127_1418826_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 429.0
DYD3_k127_1418826_2 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000002498 161.0
DYD3_k127_1435283_0 Putative citrate transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005016 524.0
DYD3_k127_146438_0 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009658 449.0
DYD3_k127_146438_1 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000007029 222.0
DYD3_k127_146438_2 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.00000000000000000000000000000000000000000000000000000002818 202.0
DYD3_k127_146438_3 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000543 176.0
DYD3_k127_1470027_0 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 456.0
DYD3_k127_1470027_1 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000002944 226.0
DYD3_k127_1470027_2 Lysine methyltransferase - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010565,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031974,GO:0031998,GO:0031999,GO:0032259,GO:0036211,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043467,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045833,GO:0045922,GO:0046320,GO:0046322,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050994,GO:0050995,GO:0051341,GO:0051354,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1904732,GO:1904733,GO:1904735,GO:1904736 - 0.00000000000000000000000000000000000000000005643 163.0
DYD3_k127_1478707_0 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 628.0
DYD3_k127_1478707_1 - - - - 0.0000000000000000000000000004501 117.0
DYD3_k127_1491826_0 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000567 369.0
DYD3_k127_1491826_1 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000002057 218.0
DYD3_k127_1508636_0 argininosuccinate lyase K01755 - 4.3.2.1 2.811e-194 626.0
DYD3_k127_1508636_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 352.0
DYD3_k127_1508636_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000001219 257.0
DYD3_k127_1508636_3 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000004002 152.0
DYD3_k127_1508636_4 bleomycin resistance protein - - - 0.00000000006757 65.0
DYD3_k127_1518257_0 COG0733 Na -dependent transporters of the SNF family K03308 - - 0.000000000000000000000000000000000002666 141.0
DYD3_k127_1518257_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000001675 63.0
DYD3_k127_1521231_0 Polysaccharide biosynthesis protein K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 506.0
DYD3_k127_1521231_1 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007991 294.0
DYD3_k127_1521231_2 Nucleotidyl transferase K00973 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0005996,GO:0006006,GO:0006139,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008879,GO:0009058,GO:0009059,GO:0009117,GO:0009141,GO:0009147,GO:0009200,GO:0009211,GO:0009219,GO:0009225,GO:0009226,GO:0009262,GO:0009394,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019299,GO:0019300,GO:0019305,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019692,GO:0030312,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0045226,GO:0046075,GO:0046364,GO:0046379,GO:0046383,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.7.7.24 0.000000000000000000000000000000000000000006466 155.0
DYD3_k127_152128_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 3.152e-225 709.0
DYD3_k127_152128_1 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 321.0
DYD3_k127_1521958_0 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 437.0
DYD3_k127_1521958_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008775 339.0
DYD3_k127_1521958_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003713 281.0
DYD3_k127_1530054_0 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526 391.0
DYD3_k127_1530054_1 Protein of unknown function (DUF1153) - - - 0.00000000000000000000000000000000000000000001178 164.0
DYD3_k127_1530349_0 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003228 258.0
DYD3_k127_1530349_1 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000003968 253.0
DYD3_k127_1530349_2 Arylesterase - - - 0.000000000000000000000313 99.0
DYD3_k127_1535370_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 4.488e-237 742.0
DYD3_k127_1535370_1 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 3.066e-219 690.0
DYD3_k127_1535370_2 Ion channel K10716 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0042802,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 348.0
DYD3_k127_1535370_3 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000915 266.0
DYD3_k127_1535370_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000002024 183.0
DYD3_k127_1535370_5 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.00000000000000000000000003479 109.0
DYD3_k127_1541570_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 565.0
DYD3_k127_1541570_1 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000000000007431 108.0
DYD3_k127_1554448_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233 617.0
DYD3_k127_1554448_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 432.0
DYD3_k127_1554448_2 Transcriptional regulatory protein, C terminal K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001676 284.0
DYD3_k127_1554448_3 transcriptional - - - 0.00000000000000000000000000000000000000000000001003 176.0
DYD3_k127_1554448_4 - - - - 0.0000000000000000000000000000000000000000001443 161.0
DYD3_k127_1554448_5 Histidine kinase K07638 - 2.7.13.3 0.0001268 44.0
DYD3_k127_1568005_0 Transport of potassium into the cell K03549 - - 2.484e-198 636.0
DYD3_k127_1568005_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 462.0
DYD3_k127_1568005_2 Protein of unknown function (DUF1579) - - - 0.0000000000000000000004384 107.0
DYD3_k127_1568005_3 Glutathione S-transferase, N-terminal domain - - - 0.00000001718 57.0
DYD3_k127_1568005_4 Protein of unknown function (DUF2975) - - - 0.00000004537 62.0
DYD3_k127_1568005_5 Outer membrane lipoprotein - - - 0.0001549 52.0
DYD3_k127_1579182_0 COG0076 Glutamate decarboxylase and related PLP-dependent K01634 - 4.1.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004341 470.0
DYD3_k127_1579182_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000823 203.0
DYD3_k127_1591835_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005074 564.0
DYD3_k127_1591835_1 NADH-ubiquinone oxidoreductase chain 4, amino terminus K00342 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 444.0
DYD3_k127_1591835_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000407 339.0
DYD3_k127_1591835_3 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000004204 244.0
DYD3_k127_1591835_4 Zn-dependent metallo-hydrolase RNA specificity domain K12574 - - 0.00000000000000000000000000000000000000000000000001145 194.0
DYD3_k127_1597836_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K00249,K00294,K13821 - 1.2.1.88,1.3.8.7,1.5.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 571.0
DYD3_k127_1597836_1 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003633 267.0
DYD3_k127_1597836_2 depolymerase K05973 - 3.1.1.75 0.00000000000000003383 81.0
DYD3_k127_1601013_0 Beta-ketoacyl synthase, C-terminal domain K00647 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.41 6.653e-220 686.0
DYD3_k127_1601013_1 Cysteine-rich domain K00113 - 1.1.5.3 9.827e-195 625.0
DYD3_k127_1601013_2 Enoyl-(Acyl carrier protein) reductase K00208 GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007981 374.0
DYD3_k127_1601013_3 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 341.0
DYD3_k127_1601013_4 COG1592 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004457 260.0
DYD3_k127_1601013_5 Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length K01716 - 4.2.1.59,5.3.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000004459 253.0
DYD3_k127_1601013_6 Protein of unknown function (DUF3501) - - - 0.0000000000000000000000000000000000000000000000000000000000000003024 239.0
DYD3_k127_1601013_7 Belongs to the Fur family K09826 - - 0.00000000000000000000000000000000000000000000000000006938 190.0
DYD3_k127_1601013_8 hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000001271 168.0
DYD3_k127_1601013_9 ABC transporter transmembrane region K06147 - - 0.0000008183 57.0
DYD3_k127_1611712_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 561.0
DYD3_k127_1611712_1 ATPases associated with a variety of cellular activities K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004373 402.0
DYD3_k127_1611712_2 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.00000000000000000000000000000000000000009963 156.0
DYD3_k127_1611712_3 Protein conserved in bacteria K09774 - - 0.00001866 48.0
DYD3_k127_161901_0 Glutathione S-transferase, C-terminal domain K00799,K03599 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 345.0
DYD3_k127_161901_1 Glutathione S-transferase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000004684 195.0
DYD3_k127_161901_2 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000001448 173.0
DYD3_k127_162615_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 301.0
DYD3_k127_162615_1 - - - - 0.00000000001156 74.0
DYD3_k127_1626715_0 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 508.0
DYD3_k127_1626715_1 Glycosyl transferases group 1 - - - 0.000000000000000000000001206 106.0
DYD3_k127_1626715_2 Belongs to the P-Pant transferase superfamily K06133 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000004702 76.0
DYD3_k127_162678_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009023 296.0
DYD3_k127_162678_1 - - - - 0.000000001707 64.0
DYD3_k127_1628437_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 447.0
DYD3_k127_1628437_1 Belongs to the FPP GGPP synthase family K00795 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007334 361.0
DYD3_k127_1628437_2 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000005356 212.0
DYD3_k127_1628437_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000000009577 103.0
DYD3_k127_1633617_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 593.0
DYD3_k127_1633617_1 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 574.0
DYD3_k127_1633617_2 Thioesterase K07107 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005028 375.0
DYD3_k127_1633617_3 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001267 261.0
DYD3_k127_1633617_4 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.000000000000000000000000000000000000000000000000000000000000006885 219.0
DYD3_k127_1633617_5 conserved secreted or membrane protein precursor - - - 0.00000000000000000000000000000000000000000000000008356 187.0
DYD3_k127_1633617_6 - - - - 0.0000000000000000000000000000000000000001053 160.0
DYD3_k127_1633617_7 - - - - 0.00000000000007088 79.0
DYD3_k127_1633617_8 - - - - 0.00000000008721 70.0
DYD3_k127_1634471_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 2.466e-273 858.0
DYD3_k127_1634471_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003834 305.0
DYD3_k127_1634471_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000007142 244.0
DYD3_k127_1695255_0 Nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004919 266.0
DYD3_k127_1695255_1 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002644 239.0
DYD3_k127_1695255_2 protein conserved in bacteria K09985 - - 0.00000000000000000000000000000000001604 151.0
DYD3_k127_1695255_4 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000000000000000000000000000005831 122.0
DYD3_k127_1695255_5 DNA-binding transcription factor activity K06075 - - 0.00000000000002437 79.0
DYD3_k127_1699089_0 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 331.0
DYD3_k127_1699089_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002671 261.0
DYD3_k127_1699089_2 transcriptional regulator - - - 0.000000000000004513 81.0
DYD3_k127_1699650_0 Uncharacterized protein family (UPF0051) K09014 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0009842,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 - 8.67e-262 811.0
DYD3_k127_1699650_1 TIGRFAM FeS assembly ATPase SufC K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002184 380.0
DYD3_k127_1699650_2 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000006356 243.0
DYD3_k127_1699650_3 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes K04487 - 2.8.1.7 0.0000000000000000000000000000005321 125.0
DYD3_k127_1699650_4 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000002163 86.0
DYD3_k127_1720408_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006555 607.0
DYD3_k127_1720408_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000513 189.0
DYD3_k127_1720408_2 luxR family K18098 - - 0.00000000000000000009483 97.0
DYD3_k127_1734091_0 MMPL family K07003 - - 5.416e-194 628.0
DYD3_k127_1734091_1 G-rich domain on putative tyrosine kinase K16554 - - 0.000000000000000000000000000000000000000000000000000000004841 205.0
DYD3_k127_1734091_2 transcriptional regulator - - - 0.0000000000000000000000000000000002093 140.0
DYD3_k127_173435_0 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 368.0
DYD3_k127_173435_1 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000003847 139.0
DYD3_k127_1760739_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006914 591.0
DYD3_k127_1760739_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001748 273.0
DYD3_k127_1760739_2 COG1960 Acyl-CoA dehydrogenases K00249 - 1.3.8.7 0.00000000000000002461 81.0
DYD3_k127_1788479_0 YmdB-like protein K09769 GO:0003674,GO:0003824,GO:0004112,GO:0004113,GO:0008081,GO:0016787,GO:0016788,GO:0042578 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 362.0
DYD3_k127_1788479_1 Beta-lactamase K18988 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000004352 248.0
DYD3_k127_1788479_2 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000000000000000000000000000000000000000001177 171.0
DYD3_k127_1788479_3 - - - - 0.000000000000000000000000002059 120.0
DYD3_k127_1788479_4 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000000000003788 97.0
DYD3_k127_1788479_5 Domain of unknown function (DUF4164) - - - 0.0000001576 56.0
DYD3_k127_1800991_0 GGDEF domain - - - 0.0000002152 63.0
DYD3_k127_1800991_1 Outer membrane protein beta-barrel domain K16079 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000009603 54.0
DYD3_k127_1805479_0 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009901 327.0
DYD3_k127_1805479_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000004357 200.0
DYD3_k127_1805479_2 Subtilase family K12685 - - 0.00000000000000000000000000000000000000193 169.0
DYD3_k127_1805479_3 Cytochrome c - - - 0.0000000000000000007234 94.0
DYD3_k127_1805479_4 - - - - 0.00009891 54.0
DYD3_k127_1809899_0 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 408.0
DYD3_k127_1809899_1 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000003877 157.0
DYD3_k127_1809899_2 Kelch motif - - - 0.0000000000000001124 89.0
DYD3_k127_1809899_3 - - - - 0.0003987 44.0
DYD3_k127_181147_0 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004703 541.0
DYD3_k127_181147_1 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002595 288.0
DYD3_k127_181147_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002767 273.0
DYD3_k127_181147_3 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000006865 274.0
DYD3_k127_181147_4 Belongs to the phosphoglycerate kinase family K00927 GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000002332 218.0
DYD3_k127_1816562_0 PFAM GumN family protein K09973 - - 0.00000000000000000000000000168 118.0
DYD3_k127_1816562_1 Cold shock K03704 - - 0.0000000000000000000000003804 105.0
DYD3_k127_1816562_2 FecR protein - - - 0.0000000000000000292 94.0
DYD3_k127_1831338_0 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004742 286.0
DYD3_k127_1831338_1 Branched-chain amino acid aminotransferase - - - 0.00000000000000000000000000000000000000000002378 165.0
DYD3_k127_1831338_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000003748 132.0
DYD3_k127_1831338_3 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00001749 48.0
DYD3_k127_1831338_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0005653 51.0
DYD3_k127_1838369_0 FAD binding domain K07077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 374.0
DYD3_k127_1838369_1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004889 265.0
DYD3_k127_1839461_0 AMP-binding enzyme K00666 - - 2.546e-247 776.0
DYD3_k127_1839461_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000001229 173.0
DYD3_k127_1839461_2 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000008987 74.0
DYD3_k127_1844727_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038,K21977 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005337 573.0
DYD3_k127_1844727_1 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 413.0
DYD3_k127_1844727_2 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000000003526 207.0
DYD3_k127_1844727_3 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000004406 187.0
DYD3_k127_1848520_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 580.0
DYD3_k127_1848520_1 Quinolinate phosphoribosyl transferase, N-terminal domain K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 364.0
DYD3_k127_1848520_2 FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02416 - - 0.0000000000000000000000000000000000000001848 151.0
DYD3_k127_1848520_3 PFAM MgtE intracellular - - - 0.0000000000000000000000000001362 125.0
DYD3_k127_1848520_4 Fumarate reductase flavoprotein C-term K00278 - 1.4.3.16 0.000000000000000000000002662 106.0
DYD3_k127_1848520_5 - - - - 0.00000000004825 72.0
DYD3_k127_1853144_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 500.0
DYD3_k127_1853144_1 COG0768 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000003019 238.0
DYD3_k127_1855949_0 NADH-ubiquinone oxidoreductase chain 49kDa - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 524.0
DYD3_k127_1855949_1 Proton-conducting membrane transporter K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009782 357.0
DYD3_k127_1856998_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 559.0
DYD3_k127_1856998_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000462 279.0
DYD3_k127_1861262_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.945e-198 624.0
DYD3_k127_1861262_1 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000004013 249.0
DYD3_k127_1861262_2 transcriptional - - - 0.000000000000000000000000000000000000000000007037 167.0
DYD3_k127_1861262_3 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000007585 158.0
DYD3_k127_1869510_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 476.0
DYD3_k127_1869510_1 m protein repeat protein K20293 - - 0.0005378 48.0
DYD3_k127_1871040_0 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000033 225.0
DYD3_k127_1871040_1 Helix-turn-helix - - - 0.00000000000000000000001059 106.0
DYD3_k127_1871040_2 PFAM FecR protein - - - 0.0000000000002412 77.0
DYD3_k127_1874550_0 TonB dependent receptor - - - 1.378e-313 990.0
DYD3_k127_1874550_1 Biotin carboxylase C-terminal domain K01968 - 6.4.1.4 2.559e-249 788.0
DYD3_k127_1874550_2 enoyl-CoA hydratase K13766,K13779 - 4.2.1.18,4.2.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006174 284.0
DYD3_k127_1874550_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001816 230.0
DYD3_k127_1874550_4 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000001184 183.0
DYD3_k127_1874550_5 Oxidizes proline to glutamate for use as a carbon and nitrogen source K00249,K00294,K13821 - 1.2.1.88,1.3.8.7,1.5.5.2 0.000000000000000000000000000000000000000000000001069 177.0
DYD3_k127_1874550_6 Belongs to the RNase T2 family K01166,K01169 - 3.1.27.1,3.1.27.6 0.000000000000000000000000000000000000000000000001072 180.0
DYD3_k127_1874550_7 EF-hand, calcium binding motif - - - 0.0001905 53.0
DYD3_k127_1874865_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 1.968e-235 732.0
DYD3_k127_1874865_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 366.0
DYD3_k127_1879030_0 O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000001168 200.0
DYD3_k127_1879030_1 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.00000000000000000000000000007382 122.0
DYD3_k127_1888374_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008013 427.0
DYD3_k127_1888374_1 ATPases associated with a variety of cellular activities K02003,K05685 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 312.0
DYD3_k127_1888374_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000004396 145.0
DYD3_k127_1888374_3 Putative auto-transporter adhesin, head GIN domain - - - 0.000002021 58.0
DYD3_k127_1895542_0 Enoyl-CoA hydratase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 351.0
DYD3_k127_1895542_1 - - - - 0.00000000000000000000000000000000002892 139.0
DYD3_k127_1895542_2 YjbR - - - 0.000000000000000000000000000000002501 134.0
DYD3_k127_1905555_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007996 526.0
DYD3_k127_1905555_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000007644 222.0
DYD3_k127_1905555_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000001075 146.0
DYD3_k127_1905555_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000001447 145.0
DYD3_k127_1905555_4 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000005614 128.0
DYD3_k127_1905696_0 Peptidase C26 K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 350.0
DYD3_k127_1905696_1 alcohol dehydrogenase K00001,K00043 - 1.1.1.1,1.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006413 299.0
DYD3_k127_1907864_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 526.0
DYD3_k127_1907864_1 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000005739 227.0
DYD3_k127_1910441_0 Transcriptional regulator - - - 0.00000000008491 72.0
DYD3_k127_1927284_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.545e-250 797.0
DYD3_k127_1927284_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000002636 53.0
DYD3_k127_1928816_0 Belongs to the arylamine N-acetyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004013 249.0
DYD3_k127_1928816_1 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000001365 157.0
DYD3_k127_1928816_2 Protein of unknown function (DUF533) - - - 0.000000000000000000000000000006822 128.0
DYD3_k127_1929505_0 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 464.0
DYD3_k127_1929505_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000005369 256.0
DYD3_k127_1931849_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001023 267.0
DYD3_k127_1931849_1 PKHD-type hydroxylase K07336 - - 0.000000000000000000000000000000000000000000000000000000000000000000002433 241.0
DYD3_k127_1931849_2 Putative 2OG-Fe(II) oxygenase - - - 0.000000000000000000000000000000000000002176 148.0
DYD3_k127_1931849_3 Aspartyl/Asparaginyl beta-hydroxylase - - - 0.00000000000000000006684 90.0
DYD3_k127_1943259_0 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 353.0
DYD3_k127_1943259_1 Bacterial export proteins, family 1 K02421 - - 0.000000000000000000000000000000000000000000000000000000000000000001755 235.0
DYD3_k127_1943259_2 Role in flagellar biosynthesis K02420 - - 0.00000000000000000000006143 100.0
DYD3_k127_1943259_3 signal transduction histidine kinase K13587 - 2.7.13.3 0.00000000000001029 85.0
DYD3_k127_1943921_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0 1049.0
DYD3_k127_1947822_0 ATP-grasp domain K09181 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 387.0
DYD3_k127_1947822_1 Hsp20/alpha crystallin family K04080 - - 0.0000000000000000000000000000000000001099 145.0
DYD3_k127_1947822_2 SnoaL-like domain - - - 0.0000000000000000000000000000000000002133 154.0
DYD3_k127_1954041_0 acyl-CoA transferases carnitine dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005927 296.0
DYD3_k127_1954041_1 Nitronate monooxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000001498 253.0
DYD3_k127_1969888_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 396.0
DYD3_k127_1969888_1 Indole-3-glycerol phosphate synthase K01609,K13498 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48,5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 344.0
DYD3_k127_1969888_2 Anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 287.0
DYD3_k127_1969888_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000000577 200.0
DYD3_k127_1969888_4 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000000000000000000007071 104.0
DYD3_k127_1969888_5 - - - - 0.0000000000000001348 86.0
DYD3_k127_1971227_0 Belongs to the FPP GGPP synthase family K02523 GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009108,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0042180,GO:0042181,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 411.0
DYD3_k127_1971227_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000021 246.0
DYD3_k127_1971227_2 O-methyltransferase K15460 - 2.1.1.223 0.000000000000000000000000000000003992 134.0
DYD3_k127_1971227_3 Putative prokaryotic signal transducing protein - - - 0.000000000000004739 80.0
DYD3_k127_1974833_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 424.0
DYD3_k127_1987754_0 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009804 292.0
DYD3_k127_1987754_1 - - - - 0.0000000009172 68.0
DYD3_k127_1987754_2 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0000001297 59.0
DYD3_k127_1993923_0 MatE K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000392 302.0
DYD3_k127_1998975_0 TIGRFAM phosphate ABC transporter, inner membrane subunit PstA K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 599.0
DYD3_k127_1998975_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 GO:0003674,GO:0003824,GO:0005215,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015114,GO:0015318,GO:0015399,GO:0015405,GO:0015415,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0034220,GO:0035435,GO:0042623,GO:0042626,GO:0043225,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0098660,GO:0098661,GO:0099133 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 408.0
DYD3_k127_1998975_2 transport system, permease component K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 315.0
DYD3_k127_1998975_3 PFAM Phosphate-selective porin O and P K07221 - - 0.0000000000000000000000000000000000000000000000000003035 201.0
DYD3_k127_200362_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000005785 222.0
DYD3_k127_200362_1 Thioredoxin-like domain K03671 - - 0.0000000000000000000000000000000000000000000000000005407 186.0
DYD3_k127_200362_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000723 181.0
DYD3_k127_200362_3 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.00000000000000000000000000000000000000000001708 173.0
DYD3_k127_200362_4 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000004942 141.0
DYD3_k127_2018195_0 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 342.0
DYD3_k127_2018195_1 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000004132 187.0
DYD3_k127_2018195_2 Protein of unknown function (DUF1009) K09949 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000000000000000000002469 174.0
DYD3_k127_2022853_0 aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 555.0
DYD3_k127_2022853_1 Glyoxalase-like domain - - - 0.00000000000000000000000000000000004863 145.0
DYD3_k127_2029229_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 297.0
DYD3_k127_2029229_1 cell adhesion involved in biofilm formation - - - 0.000000000000000000000000000000000000000000000000000000000008913 223.0
DYD3_k127_2029229_2 O-methyltransferase activity - - - 0.0000000000000000000000000000000000002232 152.0
DYD3_k127_2029229_3 O-methyltransferase activity - - - 0.000000000000000000000000000000004634 136.0
DYD3_k127_2039097_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 456.0
DYD3_k127_2039097_1 Belongs to the UPF0145 family - - - 0.000000000000000000000000000000000001231 143.0
DYD3_k127_2039097_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000726 110.0
DYD3_k127_2039097_3 -acetyltransferase K03826,K03827,K18816 - 2.3.1.82 0.000000000000000004483 87.0
DYD3_k127_2046118_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 2.277e-219 700.0
DYD3_k127_2046118_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 288.0
DYD3_k127_2046118_2 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003179 278.0
DYD3_k127_2046118_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000001525 222.0
DYD3_k127_2046118_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000004942 198.0
DYD3_k127_2047084_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001347 307.0
DYD3_k127_2047084_1 Copper binding proteins, plastocyanin/azurin family - - - 0.00000000005993 64.0
DYD3_k127_2047942_0 AMP-binding enzyme C-terminal domain K00666,K02182,K20034 - 6.2.1.44,6.2.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 416.0
DYD3_k127_2047942_1 Aminotransferase class-III K16871 - 2.6.1.96 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007115 399.0
DYD3_k127_2059950_0 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008447 361.0
DYD3_k127_2059950_1 Protein of unknown function (DUF3754) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002074 276.0
DYD3_k127_2073251_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002516 267.0
DYD3_k127_2104306_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009587 476.0
DYD3_k127_2104306_1 Binding-protein-dependent transport system inner membrane component K02053 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006281 268.0
DYD3_k127_2104306_2 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.00005936 47.0
DYD3_k127_2118812_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 4.847e-294 914.0
DYD3_k127_2118812_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941,K18824 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 287.0
DYD3_k127_2118812_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000007406 56.0
DYD3_k127_2118812_3 - - - - 0.0001375 50.0
DYD3_k127_2125175_0 Belongs to the thiolase family K00626 - 2.3.1.9 4.331e-202 634.0
DYD3_k127_2125175_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00023,K00059 - 1.1.1.100,1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 381.0
DYD3_k127_2125175_2 PHB accumulation regulatory domain - - - 0.0000000000000000000000000000000000000000000000000000000002735 210.0
DYD3_k127_2125175_3 GGDEF domain - - - 0.00000000000000000000000000000000000000000008034 162.0
DYD3_k127_2125175_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000001446 153.0
DYD3_k127_2125175_5 Protein of unknown function (DUF983) - - - 0.0000000000000000000000000000003652 130.0
DYD3_k127_2125175_6 Pentapeptide repeats (9 copies) - - - 0.0000000000000000000005496 103.0
DYD3_k127_2125175_7 Ankyrin repeat - - - 0.0007801 47.0
DYD3_k127_2129259_0 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 340.0
DYD3_k127_2129259_1 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000002366 114.0
DYD3_k127_2129259_2 COG0457 FOG TPR repeat - - - 0.000000000000000000000001838 109.0
DYD3_k127_2132806_0 PFAM Aldehyde dehydrogenase K00128,K00130 - 1.2.1.3,1.2.1.8 1.222e-242 758.0
DYD3_k127_2132806_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 1.418e-200 636.0
DYD3_k127_2132806_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 495.0
DYD3_k127_2132806_3 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 316.0
DYD3_k127_2136980_0 PFAM IS66 Orf2 like protein K07484 - - 0.00000000000000000000104 106.0
DYD3_k127_2141120_0 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 465.0
DYD3_k127_2141120_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537 425.0
DYD3_k127_2141120_2 Secretion protein K01993 - - 0.0000000000000000000000000000000000000000002087 162.0
DYD3_k127_2141120_3 CHAP domain - - - 0.000000000000000000000000000000000003416 144.0
DYD3_k127_214153_0 Serine dehydrogenase proteinase - - - 0.0000000000000000000000000000000000000000000000000004356 207.0
DYD3_k127_214153_1 Serine dehydrogenase proteinase - - - 0.00000000000000000000000000000000000000000000002425 192.0
DYD3_k127_2141913_0 Methyltransferase domain - - - 0.00000000000000000000000000000000002173 141.0
DYD3_k127_2141913_1 carbohydrate metabolic process - - - 0.00000000000000001856 94.0
DYD3_k127_2151708_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003086 542.0
DYD3_k127_2151708_1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 437.0
DYD3_k127_2151708_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 439.0
DYD3_k127_2151708_3 - - - - 0.000000000000005302 83.0
DYD3_k127_2153723_0 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 355.0
DYD3_k127_2153723_1 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000002433 192.0
DYD3_k127_2153723_2 Belongs to the ompA family - - - 0.00000000000002736 74.0
DYD3_k127_2153723_3 Belongs to the ompA family - - - 0.000000003152 66.0
DYD3_k127_2156503_0 GTP-binding protein TypA K06207 - - 6.818e-285 887.0
DYD3_k127_2156503_1 NADH-ubiquinone oxidoreductase chain 49kDa - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 287.0
DYD3_k127_2156503_2 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001149 263.0
DYD3_k127_2156503_3 Histidine kinase K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000001042 226.0
DYD3_k127_2156503_4 transcriptional regulator - - - 0.0000000000000000000000000000000000000000005136 160.0
DYD3_k127_2156503_6 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.0007204 44.0
DYD3_k127_2159686_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0016020,GO:0016787,GO:0019538,GO:0033218,GO:0042277,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 3.4.11.2 3.26e-322 1020.0
DYD3_k127_2159686_1 TonB dependent receptor - - - 5.746e-204 674.0
DYD3_k127_2159686_2 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 309.0
DYD3_k127_2159686_3 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000071 207.0
DYD3_k127_2160146_0 Histidine kinase K14980 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 398.0
DYD3_k127_2160146_1 PTS system fructose IIA component K02793 - 2.7.1.191 0.000000000000000000000000000000000000000000000000000104 189.0
DYD3_k127_2160146_2 COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism K06023 - - 0.000000000000000000000000002472 115.0
DYD3_k127_2160146_3 PTS HPr component phosphorylation site K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006808,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0044424,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702 - 0.00000000000000000000002872 103.0
DYD3_k127_2160146_4 TraB family K09973 - - 0.0000000000000000000001286 103.0
DYD3_k127_2160146_5 Transcriptional regulatory protein, C terminal K14981 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000006589 71.0
DYD3_k127_2200149_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006049 429.0
DYD3_k127_2200149_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002588 394.0
DYD3_k127_2200149_2 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000001779 233.0
DYD3_k127_2200149_3 Protein of unknown function (DUF1036) - - - 0.0000000000009112 81.0
DYD3_k127_2203734_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 8.84e-204 651.0
DYD3_k127_2203734_1 Conserved hypothetical protein 698 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 353.0
DYD3_k127_2217305_0 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 344.0
DYD3_k127_2217305_1 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000006164 101.0
DYD3_k127_2219058_0 PFAM 2-nitropropane dioxygenase NPD K00459,K02371 - 1.13.12.16,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 471.0
DYD3_k127_2219058_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000008186 93.0
DYD3_k127_2219058_2 prohibitin homologues - - - 0.00000000000003386 77.0
DYD3_k127_2232305_0 Exporters of the RND superfamily K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 506.0
DYD3_k127_2232305_1 Sugar-specific transcriptional regulator TrmB - - - 0.0000000000004056 73.0
DYD3_k127_2233096_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 7.441e-220 691.0
DYD3_k127_2233096_1 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 609.0
DYD3_k127_2233096_2 acyl-CoA transferases carnitine dehydratase K18702 - 2.8.3.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 497.0
DYD3_k127_2233096_3 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 476.0
DYD3_k127_2233096_4 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007752 269.0
DYD3_k127_2233096_5 protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis - - - 0.000000000000002413 80.0
DYD3_k127_2233096_6 Domain of unknown function (DUF4169) - - - 0.000006308 52.0
DYD3_k127_2236313_0 Protein of unknown function (DUF3604) - - - 3.97e-272 852.0
DYD3_k127_2236313_1 cobalamin-transporting ATPase activity - - - 0.0000000000000000000000000000000000000000000006796 181.0
DYD3_k127_2236313_2 PPIC-type PPIASE domain - - - 0.00000000000000000000000292 114.0
DYD3_k127_2236514_0 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000003718 248.0
DYD3_k127_2236514_1 Autoinducer K18096 - 2.3.1.228,2.3.1.229 0.00000000000000000000000000000000004279 142.0
DYD3_k127_2239410_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 331.0
DYD3_k127_2239410_1 Autoinducer binding domain K18098,K19733 - - 0.000000000000000001586 94.0
DYD3_k127_224672_0 Chromosome Partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005398 320.0
DYD3_k127_224672_1 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 316.0
DYD3_k127_224672_2 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000000000000006991 213.0
DYD3_k127_224672_3 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000007299 116.0
DYD3_k127_224672_4 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.00000000000004776 72.0
DYD3_k127_2248285_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 587.0
DYD3_k127_2248285_1 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 372.0
DYD3_k127_2248285_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001832 284.0
DYD3_k127_2248285_3 MOSC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005637 246.0
DYD3_k127_2248285_4 Protein of unknown function (DUF1289) K06938 - - 0.000000000001625 69.0
DYD3_k127_2257752_0 UPF0313 protein - - - 0.0 1109.0
DYD3_k127_2257752_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000003966 234.0
DYD3_k127_226658_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006372 486.0
DYD3_k127_226658_1 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 319.0
DYD3_k127_226658_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000000000000000000000000000000000002215 170.0
DYD3_k127_2270642_0 S-adenosylmethionine diacylglycerol 3-amino-3-carboxypropyl transferase K13622 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009567 476.0
DYD3_k127_2270642_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 356.0
DYD3_k127_2270642_2 Putative methyltransferase K13623 - - 0.0000000000000000000000000000000000000000000000000000002524 212.0
DYD3_k127_2276327_0 Peptidase family S41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 460.0
DYD3_k127_2276327_1 uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 304.0
DYD3_k127_2276327_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 301.0
DYD3_k127_2276327_3 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004625 281.0
DYD3_k127_2276327_4 Fatty acid desaturase K00508 - 1.14.19.3 0.000000000000000000000000000000000000000000000000000000000000000001377 241.0
DYD3_k127_2276327_5 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000003467 201.0
DYD3_k127_2276327_6 nucleoside 2-deoxyribosyltransferase K08728 - 2.4.2.6 0.0000000000000000000000000000000000000000000000000006868 188.0
DYD3_k127_2276327_7 PFAM type I phosphodiesterase nucleotide pyrophosphatase K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000002144 176.0
DYD3_k127_2276327_8 transcriptional regulator - - - 0.000000000000000000000000000000000004888 143.0
DYD3_k127_23018_0 C-terminus of AA_permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 533.0
DYD3_k127_23018_1 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000001695 120.0
DYD3_k127_23018_2 BetI-type transcriptional repressor, C-terminal - - - 0.000000000000005147 77.0
DYD3_k127_2319186_0 Domain of unknown function (DUF4105) - - - 0.0000000000000000000000000000000000000000000000000000000000001767 239.0
DYD3_k127_2319186_1 Protein conserved in bacteria K07126 - - 0.0000000000000000000001498 112.0
DYD3_k127_2352383_0 Stage II sporulation protein M - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 337.0
DYD3_k127_2352383_1 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 308.0
DYD3_k127_2388519_0 D5 N terminal like - - - 0.00000000000000000000000000000000000000000000001059 175.0
DYD3_k127_2388519_1 sequence-specific DNA binding K07729 - - 0.000000000000000000000007836 102.0
DYD3_k127_240384_0 Gamma-glutamyl cyclotransferase, AIG2-like K01515 - 3.6.1.13 0.00000000000000002823 90.0
DYD3_k127_240384_1 anti-sigma factor K07167 - - 0.000000000000007783 78.0
DYD3_k127_2404191_0 Hsp20/alpha crystallin family - - - 0.0000000000000000000000000000000000000000005426 165.0
DYD3_k127_2404191_1 Hsp20/alpha crystallin family - - - 0.0000000000000000000000000000000000025 149.0
DYD3_k127_2404191_2 PFAM CBS domain containing protein - - - 0.0000000000000000000000005824 113.0
DYD3_k127_2404191_3 Trypsin-like peptidase domain - - - 0.000000000000001872 88.0
DYD3_k127_2404191_4 WD40-like Beta Propeller Repeat - - - 0.00006513 47.0
DYD3_k127_2420282_0 Transcriptional regulatory protein, C terminal K14981 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009254 359.0
DYD3_k127_2420282_1 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 362.0
DYD3_k127_2421643_0 (twin-arginine translocation) pathway signal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002047 244.0
DYD3_k127_2428341_0 Biotin carboxylase C-terminal domain K01965 - 6.4.1.3 3.614e-249 783.0
DYD3_k127_2428341_1 Alcohol dehydrogenase GroES-like domain K00001,K00055,K00121 - 1.1.1.1,1.1.1.284,1.1.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 499.0
DYD3_k127_2428341_2 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 426.0
DYD3_k127_2428341_3 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000009295 223.0
DYD3_k127_2428341_4 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.000000000000000000000001158 106.0
DYD3_k127_2428341_5 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.00000000000000000000176 96.0
DYD3_k127_2428341_6 - - - - 0.0000000000009422 74.0
DYD3_k127_2428341_7 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0004355 53.0
DYD3_k127_2429991_0 Alpha-2-Macroglobulin K06894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 479.0
DYD3_k127_2429991_1 peroxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 421.0
DYD3_k127_2429991_2 L,D-transpeptidase catalytic domain K21470,K21572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002316 293.0
DYD3_k127_2429991_4 Trypsin - - - 0.00000000000000000000000000000000000000000000000576 186.0
DYD3_k127_2429991_5 Crp-like helix-turn-helix domain - - - 0.00000000000000000000000000000000000000006877 162.0
DYD3_k127_2434680_0 sequence-specific DNA binding - - - 0.000000000000000000000000000000000000000000000000000000000000005313 225.0
DYD3_k127_2434680_1 transduction histidine kinase - - - 0.00000000000000000000000000000000000001026 155.0
DYD3_k127_2454796_0 Peptide ABC transporter substrate-binding protein K15580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 456.0
DYD3_k127_2454796_1 Tetratricopeptide repeat - - - 0.0000000000001823 77.0
DYD3_k127_2458214_0 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 563.0
DYD3_k127_2458214_1 C-methyltransferase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 500.0
DYD3_k127_2458214_2 CDP-glucose 4,6-dehydratase K01709 - 4.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 301.0
DYD3_k127_2458214_3 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000004126 208.0
DYD3_k127_2462570_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0045333,GO:0046459,GO:0047456,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:1901363 4.2.1.3 0.0 1086.0
DYD3_k127_2462570_1 Protein of unknown function (DUF1223) - - - 0.000000000000000000000000000000000000000000000000000000000004676 216.0
DYD3_k127_2466151_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006342 282.0
DYD3_k127_2466151_1 Flavin-binding monooxygenase-like K03379 - 1.14.13.22 0.00000000000000000000000000000000000000009362 152.0
DYD3_k127_2466151_2 - - - - 0.000000000000000000000000002951 122.0
DYD3_k127_2466965_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008766 437.0
DYD3_k127_2466965_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 336.0
DYD3_k127_2466965_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003233 323.0
DYD3_k127_2466965_3 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005513 289.0
DYD3_k127_2466965_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000003187 254.0
DYD3_k127_2466965_5 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000002637 183.0
DYD3_k127_24760_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007314 491.0
DYD3_k127_24760_1 COG1702 Phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 374.0
DYD3_k127_24760_2 Transporter associated domain K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 332.0
DYD3_k127_24760_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000027 213.0
DYD3_k127_24760_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000009708 139.0
DYD3_k127_2487325_0 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 539.0
DYD3_k127_2487325_1 Zinc-binding dehydrogenase K19745 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 437.0
DYD3_k127_2487325_2 LysE type translocator - - - 0.00000000000000000000000000000000000007623 149.0
DYD3_k127_2487325_3 Usg-like family - - - 0.0000000000000000000000000000000009934 131.0
DYD3_k127_2495896_0 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004248 347.0
DYD3_k127_2495896_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000674 327.0
DYD3_k127_2495896_2 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 317.0
DYD3_k127_2495896_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000001094 193.0
DYD3_k127_2508205_0 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003739 340.0
DYD3_k127_2508205_1 Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues K01791,K08068 GO:0000271,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0008761,GO:0009058,GO:0009059,GO:0009246,GO:0009987,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0033692,GO:0034637,GO:0034645,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046378,GO:0071704,GO:1901135,GO:1901137,GO:1901576 3.2.1.183,5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 306.0
DYD3_k127_2532350_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 499.0
DYD3_k127_2532350_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006536 380.0
DYD3_k127_2532350_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000101 242.0
DYD3_k127_2532350_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000002465 131.0
DYD3_k127_2540979_0 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 448.0
DYD3_k127_2546696_0 2-oxoglutarate dehydrogenase C-terminal K00164 - 1.2.4.2 2.295e-218 686.0
DYD3_k127_2546696_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 446.0
DYD3_k127_2547448_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 509.0
DYD3_k127_2547448_1 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 310.0
DYD3_k127_2547448_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 316.0
DYD3_k127_2547448_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006503 263.0
DYD3_k127_2547448_4 Transcriptional regulator - - - 0.0000000000000000003484 94.0
DYD3_k127_2547524_0 Major Facilitator Superfamily K08224 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004639 425.0
DYD3_k127_2547524_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 302.0
DYD3_k127_2569684_0 diguanylate cyclase K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 488.0
DYD3_k127_2569684_1 Response regulator receiver domain K11443 - - 0.00000000000000000000000000000000000000000000000000000000000002796 218.0
DYD3_k127_2569684_2 Protein of unknown function (DUF3572) - - - 0.000000005398 60.0
DYD3_k127_257132_0 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 343.0
DYD3_k127_257132_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000002219 220.0
DYD3_k127_257132_2 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.0000000000000000000000000000000000000000004121 164.0
DYD3_k127_2572005_0 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000004264 151.0
DYD3_k127_2572005_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000001341 136.0
DYD3_k127_2572005_2 IMG reference gene - - - 0.000000000000000000000000000000001586 142.0
DYD3_k127_2572005_3 FecR protein - - - 0.0000000000000000000000000000002838 138.0
DYD3_k127_257643_0 - - - - 0.000000000000000000000000000000000000000005938 161.0
DYD3_k127_257643_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000007981 87.0
DYD3_k127_257643_2 Saccharopine dehydrogenase - - - 0.00000003353 60.0
DYD3_k127_2582981_0 membrane-anchored protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003124 267.0
DYD3_k127_2582981_1 KR domain - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000586 199.0
DYD3_k127_2582981_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000004539 188.0
DYD3_k127_2582981_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000008333 144.0
DYD3_k127_2583667_0 Protein of unknown function (DUF1298) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 302.0
DYD3_k127_2583667_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000066 287.0
DYD3_k127_2583667_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.000000000000000000000002542 114.0
DYD3_k127_2583667_3 Phasin protein - - - 0.000003838 54.0
DYD3_k127_2584444_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000005367 235.0
DYD3_k127_2584444_1 - - - - 0.00000000000000000000000000001519 133.0
DYD3_k127_2584444_2 Transcriptional regulator - - - 0.0000000000000000003042 96.0
DYD3_k127_2587397_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 6.835e-247 770.0
DYD3_k127_2587397_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003078 273.0
DYD3_k127_2587397_2 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000003333 123.0
DYD3_k127_2604749_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 1.031e-294 914.0
DYD3_k127_2604749_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.622e-265 831.0
DYD3_k127_2604749_2 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 459.0
DYD3_k127_2604749_3 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 420.0
DYD3_k127_2604749_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000001956 113.0
DYD3_k127_2612668_0 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000003175 203.0
DYD3_k127_2612668_1 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000005636 155.0
DYD3_k127_2617124_0 RDD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002527 262.0
DYD3_k127_2617124_1 - - - - 0.000000000000000000000000000000000006732 147.0
DYD3_k127_2617124_2 - - - - 0.000000000000000218 90.0
DYD3_k127_2624132_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 384.0
DYD3_k127_2624132_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006742 280.0
DYD3_k127_2624132_2 AcrB/AcrD/AcrF family - - - 0.0000000000000000000000000000000000000000000002057 169.0
DYD3_k127_2642729_0 TIGRFAM TRAP transporter solute receptor, TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 292.0
DYD3_k127_2642729_1 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000001321 214.0
DYD3_k127_2647257_0 Rieske [2Fe-2S] domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 326.0
DYD3_k127_2647257_1 enoyl-CoA hydratase isomerase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 286.0
DYD3_k127_2674580_0 acyl-CoA dehydrogenase K22027 - 1.14.13.235 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009915 410.0
DYD3_k127_2674580_1 SnoaL-like domain - - - 0.0000000000000000000000000000000044 138.0
DYD3_k127_2674580_2 acyl-CoA dehydrogenase - - - 0.00000000000000000004738 89.0
DYD3_k127_2674580_3 4-hydroxy-tetrahydrodipicolinate reductase K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000331 54.0
DYD3_k127_2687680_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005572 453.0
DYD3_k127_2687680_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007094 259.0
DYD3_k127_2687680_2 Acetyltransferase (GNAT) domain - - - 0.00000000000232 67.0
DYD3_k127_2688582_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03941 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 282.0
DYD3_k127_2688582_1 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000003052 248.0
DYD3_k127_2688582_2 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000002123 215.0
DYD3_k127_2688582_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000001158 163.0
DYD3_k127_2692503_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 368.0
DYD3_k127_2692503_1 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 316.0
DYD3_k127_2692503_2 Protein of unknown function (DUF2497) K09991 - - 0.00000000000000000000000006363 115.0
DYD3_k127_2694797_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005617 327.0
DYD3_k127_2694797_1 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000003806 172.0
DYD3_k127_2698490_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005626 395.0
DYD3_k127_2698490_1 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 319.0
DYD3_k127_2698490_2 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000002132 218.0
DYD3_k127_2698490_3 Protein of unknown function - - - 0.000000000000000000000000000000000002848 158.0
DYD3_k127_2698490_4 COG1664 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000000000003576 136.0
DYD3_k127_27122_0 Protein of unknown function DUF45 K07043 - - 0.0000000000000000000000000000000000000000000000000000000009255 212.0
DYD3_k127_27122_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06991 - - 0.000000000000000000000000000000000000000000000000000000008901 204.0
DYD3_k127_27122_2 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000391 105.0
DYD3_k127_27122_3 Glyoxalase-like domain - - - 0.000000000005037 67.0
DYD3_k127_2720689_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 590.0
DYD3_k127_2720689_1 PFAM Peptidase M1 membrane alanine aminopeptidase K01263 - 3.4.11.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 555.0
DYD3_k127_2720689_2 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 469.0
DYD3_k127_2720689_3 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 449.0
DYD3_k127_2720689_4 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.000000000000000005585 83.0
DYD3_k127_2730756_0 GTP-binding GTPase Middle Region K03665 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018193,GO:0018209,GO:0019001,GO:0019222,GO:0019538,GO:0019843,GO:0022411,GO:0030554,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036211,GO:0036289,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 498.0
DYD3_k127_2730756_1 Catalyzes the transamination of D-amino acids and their alpha-keto acids K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000007601 253.0
DYD3_k127_2730756_2 Hfq protein K03666 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006807,GO:0008150,GO:0008152,GO:0009399,GO:0071941,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000008543 143.0
DYD3_k127_2730756_3 DinB superfamily - - - 0.000000000000002902 75.0
DYD3_k127_2737982_0 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 - 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 452.0
DYD3_k127_2737982_1 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000008006 196.0
DYD3_k127_2744717_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000002401 235.0
DYD3_k127_2744717_1 Glyoxalase Bleomycin resistance protein - - - 0.0000000000000000000000000000000000000000000000001279 184.0
DYD3_k127_2744717_2 tetR family - - - 0.0000000000000000000000000000000000000000009308 163.0
DYD3_k127_2764643_0 glutamine synthetase K01915 - 6.3.1.2 4.448e-234 731.0
DYD3_k127_2764643_1 acetyl-coa acetyltransferase K00626 - 2.3.1.9 5.23e-213 676.0
DYD3_k127_2764643_2 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 497.0
DYD3_k127_2764643_3 Aspartate tyrosine aromatic aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 483.0
DYD3_k127_2764643_4 nitrogen regulatory protein P-II K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.000000000000000000000000000000000000000000000000000000001202 201.0
DYD3_k127_2764643_5 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000001277 176.0
DYD3_k127_2767635_0 ABC transporter substrate-binding protein K02035,K15580 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006457,GO:0006810,GO:0006857,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015833,GO:0030288,GO:0030313,GO:0031975,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0061077,GO:0071702,GO:0071705,GO:1900750 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000362 375.0
DYD3_k127_2767635_1 COG4166 ABC-type oligopeptide transport system, periplasmic component K02035,K15580 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006457,GO:0006810,GO:0006857,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015833,GO:0030288,GO:0030313,GO:0031975,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0061077,GO:0071702,GO:0071705,GO:1900750 - 0.00000004023 57.0
DYD3_k127_2770374_0 NeuB family K01654,K15898 - 2.5.1.56,2.5.1.97 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 383.0
DYD3_k127_2770374_1 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase K07257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 393.0
DYD3_k127_2772453_0 Ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 513.0
DYD3_k127_2772453_1 FAD binding domain K03185 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0019168,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 463.0
DYD3_k127_2772453_2 WYL domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 328.0
DYD3_k127_2772453_3 Belongs to the P(II) protein family K04751,K04752 - - 0.0000000000000000000000000000000000000000000000002539 179.0
DYD3_k127_2774272_0 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 444.0
DYD3_k127_2774272_1 Beta-lactamase - - - 0.0000000000000000009435 88.0
DYD3_k127_2774272_2 Enoyl-(Acyl carrier protein) reductase - - - 0.0000002099 53.0
DYD3_k127_278118_0 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000201 259.0
DYD3_k127_278118_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000002237 205.0
DYD3_k127_278118_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000007681 185.0
DYD3_k127_278118_3 Activator of Hsp90 ATPase - - - 0.0000000000000000000000000000000002868 132.0
DYD3_k127_278118_4 Glutathione S-transferase, C-terminal domain - - - 0.000000000000000000000000000000008676 129.0
DYD3_k127_2784818_0 receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004957 561.0
DYD3_k127_2784818_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008724 382.0
DYD3_k127_2785049_0 SpoVR family K06415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 528.0
DYD3_k127_2785049_1 protein possibly involved in aromatic compounds catabolism - - - 0.0000000000000000000000000000000000000000000000000000000000001223 221.0
DYD3_k127_2785049_2 protein, possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000000001173 177.0
DYD3_k127_2785049_3 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000006064 162.0
DYD3_k127_2791253_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 501.0
DYD3_k127_2791253_1 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006734 319.0
DYD3_k127_2791253_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001504 251.0
DYD3_k127_2796219_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000001669 263.0
DYD3_k127_2796219_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000001045 212.0
DYD3_k127_2796219_2 invasion associated locus B - - - 0.000000000000000000000000000000000000000003153 163.0
DYD3_k127_2796219_3 Anti-sigma factor K07167 - - 0.00000000000000000000000002552 118.0
DYD3_k127_2804468_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 317.0
DYD3_k127_2804468_1 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 291.0
DYD3_k127_2804468_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000007444 208.0
DYD3_k127_2804468_3 Las17-binding protein actin regulator - - - 0.00000000000000000000008799 107.0
DYD3_k127_2804468_4 - - - - 0.0000000000000000000004226 100.0
DYD3_k127_2804468_5 - - - - 0.000000000000000000001971 97.0
DYD3_k127_2804468_6 Las17-binding protein actin regulator - - - 0.00000000000001667 73.0
DYD3_k127_2804468_7 - - - - 0.000001232 53.0
DYD3_k127_2804468_8 PRC-barrel domain - - - 0.00000791 55.0
DYD3_k127_2806722_0 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 585.0
DYD3_k127_2806722_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 452.0
DYD3_k127_2819360_0 Transcriptional regulator - - - 0.0000000000000000000000000004671 123.0
DYD3_k127_2819360_1 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.000000000000000006096 84.0
DYD3_k127_2819559_0 Patatin phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 419.0
DYD3_k127_2819559_1 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000002014 177.0
DYD3_k127_2821834_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 548.0
DYD3_k127_2821834_1 Protein of unknown function (DUF3667) - - - 0.000000000000000000000273 103.0
DYD3_k127_2827329_0 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 353.0
DYD3_k127_2827329_1 ABC 3 transport family K02075,K11606 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005898 346.0
DYD3_k127_2827329_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 315.0
DYD3_k127_2827329_3 ATPases associated with a variety of cellular activities K02074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004676 282.0
DYD3_k127_2827329_4 Nudix N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000001067 238.0
DYD3_k127_2827329_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000003371 152.0
DYD3_k127_2827329_6 Belongs to the bacterial solute-binding protein 9 family K02077,K09815 - - 0.00000000000000000000000000000000009055 137.0
DYD3_k127_2827329_7 Etoposide-induced protein 2.4 (EI24) K06203 - - 0.0000000000000000000000000000000003189 139.0
DYD3_k127_2827329_8 Phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.000000000000000000000000001804 116.0
DYD3_k127_2842656_0 Peptidase, M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 521.0
DYD3_k127_2842656_1 endonuclease exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000003467 203.0
DYD3_k127_2856345_0 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 386.0
DYD3_k127_2856345_1 OstA-like protein K09774 - - 0.000000000000000000001474 105.0
DYD3_k127_2856345_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000005264 89.0
DYD3_k127_2898302_0 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 553.0
DYD3_k127_2898302_1 PFAM Excinuclease ABC C subunit domain protein K07461 - - 0.00000000000000000000000000000001373 129.0
DYD3_k127_2899118_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 377.0
DYD3_k127_2899118_1 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000005376 225.0
DYD3_k127_2901255_0 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002857 275.0
DYD3_k127_2901255_1 Putative cyclase - - - 0.0000000000000000000003947 101.0
DYD3_k127_2901255_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000491 73.0
DYD3_k127_2903383_0 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002678 260.0
DYD3_k127_2903383_1 - - - - 0.0000000000000000000000000003573 121.0
DYD3_k127_2916867_0 Sel1-like repeats. K07126,K13582 - - 0.000000000000000000000001226 121.0
DYD3_k127_292486_0 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 381.0
DYD3_k127_292486_1 GcrA cell cycle regulator K13583 - - 0.000000000000000000000000000000000000000001248 166.0
DYD3_k127_292486_2 Aminotransferase class-III K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.0000000000000000000000000003467 115.0
DYD3_k127_2942274_0 TonB dependent receptor K16087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 524.0
DYD3_k127_2942274_1 Haem utilisation ChuX/HutX K07225 - - 0.0000000000000000000000000004546 124.0
DYD3_k127_2942529_0 glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 416.0
DYD3_k127_2942529_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 336.0
DYD3_k127_2942529_2 - - - - 0.00007607 53.0
DYD3_k127_2951351_0 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000296 285.0
DYD3_k127_2951351_1 ABC transporter K02003 - - 0.0000000000000000000000000000009888 123.0
DYD3_k127_2951351_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000005843 112.0
DYD3_k127_2951351_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000000000000000000000000008218 117.0
DYD3_k127_2951351_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000003199 118.0
DYD3_k127_2951351_5 SnoaL-like domain - - - 0.000000000003312 67.0
DYD3_k127_2951351_6 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.0000007406 56.0
DYD3_k127_2966126_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 400.0
DYD3_k127_2966126_1 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 305.0
DYD3_k127_2966126_2 CYTH - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001457 294.0
DYD3_k127_2966126_3 Predicted membrane protein (DUF2061) - - - 0.00000000000000000001306 93.0
DYD3_k127_2966126_4 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000362 84.0
DYD3_k127_2966126_5 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000002725 81.0
DYD3_k127_2971348_0 TonB dependent receptor K02014 - - 5.162e-278 860.0
DYD3_k127_2971348_1 Beta-lactamase - - - 9.089e-218 685.0
DYD3_k127_2971348_2 Belongs to the type-B carboxylesterase lipase family K03929 - - 2.207e-210 671.0
DYD3_k127_2971348_3 MFS/sugar transport protein K03292 - - 1.648e-202 645.0
DYD3_k127_2976787_0 C-terminal, D2-small domain, of ClpB protein K03694 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 479.0
DYD3_k127_2976787_1 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.000000000000000000000000000000000000000000000000454 176.0
DYD3_k127_2976787_2 Protein conserved in bacteria - - - 0.000000000000000000001219 100.0
DYD3_k127_2976787_3 phasin family - - - 0.000000000000000000003674 99.0
DYD3_k127_298263_0 peptidase M13 K07386 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008429 396.0
DYD3_k127_2989272_0 lipid biosynthetic process K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009776 350.0
DYD3_k127_2989272_1 Flavin containing amine oxidoreductase K06954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 297.0
DYD3_k127_3016584_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 5.125e-213 676.0
DYD3_k127_3016584_1 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005299 458.0
DYD3_k127_3016584_2 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007068 400.0
DYD3_k127_3023372_0 Ribosomal protein S3, C-terminal domain K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 385.0
DYD3_k127_3023372_1 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000002136 224.0
DYD3_k127_3023372_2 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000003595 224.0
DYD3_k127_3023372_3 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000003694 174.0
DYD3_k127_3023372_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000437 142.0
DYD3_k127_3023372_5 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000006671 139.0
DYD3_k127_3023372_6 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000009103 117.0
DYD3_k127_3023372_7 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000001566 86.0
DYD3_k127_3023758_0 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 295.0
DYD3_k127_3023758_1 Sodium/calcium exchanger protein K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005147 274.0
DYD3_k127_3023758_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000003441 119.0
DYD3_k127_3023758_3 peptidase K01354 - 3.4.21.83 0.000000000000000000000000003845 112.0
DYD3_k127_3028149_0 NAD(P)H-binding K15894 - 4.2.1.115 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 501.0
DYD3_k127_3028149_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 362.0
DYD3_k127_3028951_0 Putative beta-barrel porin 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004153 257.0
DYD3_k127_3028951_1 Chain length determinant protein K16554 - - 0.0000000000000000000000007211 113.0
DYD3_k127_3029605_0 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000003019 216.0
DYD3_k127_3029605_1 SufE protein probably involved in Fe-S center assembly K02426 - - 0.00000000000000000000000000000000000000000008095 163.0
DYD3_k127_3029605_2 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000000000000000000548 151.0
DYD3_k127_3029605_3 Acetyltransferase (GNAT) domain K00657 - 2.3.1.57 0.000000000000000000000000000002911 126.0
DYD3_k127_3032138_0 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000007439 239.0
DYD3_k127_3032138_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000004765 161.0
DYD3_k127_3032138_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000003705 141.0
DYD3_k127_3034386_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009433 302.0
DYD3_k127_3034386_1 Cytochrome c, class I K08738 - - 0.0000000000000000000004586 100.0
DYD3_k127_3034386_2 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.000000000000000008923 83.0
DYD3_k127_303863_0 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 393.0
DYD3_k127_303863_1 PFAM Alpha beta hydrolase fold-3 domain protein K01066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007088 340.0
DYD3_k127_303863_2 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000001054 163.0
DYD3_k127_303863_3 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.00000000000000000000000000003261 133.0
DYD3_k127_3043298_0 Belongs to the DEAD box helicase family K03732,K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 543.0
DYD3_k127_3043298_1 glucose sorbosone K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 374.0
DYD3_k127_3043298_2 helix_turn_helix ASNC type - - - 0.0000000001102 65.0
DYD3_k127_3046363_0 Acyl-CoA dehydrogenase, N-terminal domain K00252 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.3.8.6 6.191e-202 635.0
DYD3_k127_3046363_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004031 317.0
DYD3_k127_3046363_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 319.0
DYD3_k127_3046363_3 - - - - 0.0000000000000000000000000000000000000000000000000000001854 207.0
DYD3_k127_3056207_0 Putative S-adenosyl-L-methionine-dependent methyltransferase K00574,K18164 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003798 331.0
DYD3_k127_3056207_1 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005891 302.0
DYD3_k127_3056207_2 - - - - 0.0000000000000005419 90.0
DYD3_k127_3056904_0 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000008765 196.0
DYD3_k127_3056904_1 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000009793 175.0
DYD3_k127_3056904_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005615,GO:0005623,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0030288,GO:0030313,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042597,GO:0043167,GO:0043169,GO:0044237,GO:0044421,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.000000000000000000000008865 102.0
DYD3_k127_3059064_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1055.0
DYD3_k127_3059064_1 Prephenate dehydrogenase K00210,K00220,K04517 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0047794,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.3.1.12,1.3.1.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 467.0
DYD3_k127_3059064_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000001767 143.0
DYD3_k127_3059064_3 Uncharacterized protein conserved in bacteria (DUF2125) - - - 0.00000000000000000000000000000000001541 149.0
DYD3_k127_3059064_4 transcriptional regulator - - - 0.000000000000000000000001261 111.0
DYD3_k127_3059064_5 Outer membrane receptor proteins mostly Fe transport K02014 - - 0.00004733 48.0
DYD3_k127_3060079_0 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 363.0
DYD3_k127_3060079_1 enoyl-CoA delta isomerase 2 K13239,K17964 GO:0003674,GO:0003824,GO:0004165,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0016853,GO:0016860,GO:0016863,GO:0042579,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050829,GO:0050896,GO:0051704,GO:0051707,GO:0098542 5.3.3.8 0.00000000000000000000000000000000000000000000000000000000007152 211.0
DYD3_k127_3060079_2 - - - - 0.0000000000000000000000000000000000000000000000000000000001259 212.0
DYD3_k127_3060079_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000001719 202.0
DYD3_k127_3060079_4 Maltose operon periplasmic protein precursor (MalM) - - - 0.000000000000000000000007053 110.0
DYD3_k127_3060079_5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase - - - 0.00000000000005165 74.0
DYD3_k127_3061136_0 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004771 579.0
DYD3_k127_3061136_1 RmuC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006941 402.0
DYD3_k127_3061136_2 alpha beta K06889 - - 0.0000000000000000000000000000000001663 148.0
DYD3_k127_3061136_3 - - - - 0.000000000000000000000000001948 118.0
DYD3_k127_307614_0 glutamate--cysteine ligase K01919 - 6.3.2.2 7.923e-197 622.0
DYD3_k127_307614_1 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 327.0
DYD3_k127_307614_2 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002068 235.0
DYD3_k127_307614_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000000000000001318 198.0
DYD3_k127_307614_4 Domain of unknown function (DUF1993) K09983 - - 0.00000000000000000000003887 100.0
DYD3_k127_3080392_0 PFAM O-methyltransferase K00588 - 2.1.1.104 0.0000000000000000000000000000000000000000000000000000000000000000000004 246.0
DYD3_k127_3080392_1 PGAP1-like protein - - - 0.0000000000000000000000000000000000001931 150.0
DYD3_k127_3080392_2 Protein of unknown function (DUF2794) - - - 0.00000000000000000000000000000000001189 141.0
DYD3_k127_3083721_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009916 492.0
DYD3_k127_3083721_1 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004337 467.0
DYD3_k127_3083721_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005891 327.0
DYD3_k127_3083721_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005517 322.0
DYD3_k127_3083721_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000008818 129.0
DYD3_k127_3099782_0 Transcriptional regulator, Crp Fnr family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002898 282.0
DYD3_k127_3099782_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007059 242.0
DYD3_k127_3101255_0 Alpha-amylase domain K01187 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.2.1.20 2.234e-214 677.0
DYD3_k127_3101255_1 Serine aminopeptidase, S33 K06889 - - 0.00000000000000001587 86.0
DYD3_k127_3103321_0 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 2.806e-247 770.0
DYD3_k127_3103321_1 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 530.0
DYD3_k127_3103321_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 290.0
DYD3_k127_3103321_3 Copper binding proteins, plastocyanin/azurin family - - - 0.00000000000000000000000000005628 122.0
DYD3_k127_3117575_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007213 596.0
DYD3_k127_3117575_1 Enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000302 138.0
DYD3_k127_3117575_2 Predicted membrane protein (DUF2306) - - - 0.0000000000000000000000000000000001562 140.0
DYD3_k127_3117575_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000001482 102.0
DYD3_k127_3125076_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 316.0
DYD3_k127_3125076_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138,K18307 - - 0.00000000000000000000000000000000000000000000000000002725 193.0
DYD3_k127_312753_0 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000001747 213.0
DYD3_k127_312753_1 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000001122 160.0
DYD3_k127_312753_2 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000003338 135.0
DYD3_k127_312753_3 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000000009697 104.0
DYD3_k127_3142034_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 538.0
DYD3_k127_3142034_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005965 288.0
DYD3_k127_3142034_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000004093 164.0
DYD3_k127_3186907_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 315.0
DYD3_k127_3186907_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000004909 144.0
DYD3_k127_3186907_2 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000009565 130.0
DYD3_k127_3186907_3 - - - - 0.0000000000003103 80.0
DYD3_k127_319361_0 iron-storage protein K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000101 218.0
DYD3_k127_319361_1 OmpA family - - - 0.000000000000000000000000000000000000000000000000000000000003221 223.0
DYD3_k127_319361_2 OmpA family - - - 0.00000000000000000000000000000000000000000000000000000000731 213.0
DYD3_k127_319361_3 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000734 205.0
DYD3_k127_319361_4 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000003645 196.0
DYD3_k127_319361_5 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000008965 190.0
DYD3_k127_319361_6 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.0000000000000001073 85.0
DYD3_k127_319361_7 - - - - 0.00000000000008988 81.0
DYD3_k127_319361_8 2Fe-2S -binding domain K02192 - - 0.00000000001989 65.0
DYD3_k127_319452_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000002791 268.0
DYD3_k127_319452_1 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.000000000000000000000000000000000000000000001266 170.0
DYD3_k127_319452_2 import inner membrane translocase, subunit Tim44 - - - 0.000000000000000000843 90.0
DYD3_k127_3200189_0 MotA/TolQ/ExbB proton channel family K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599 419.0
DYD3_k127_3200189_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000702 255.0
DYD3_k127_3200189_2 pkhd-type hydroxylase K07336 - - 0.00000008825 55.0
DYD3_k127_3200189_3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0001233 46.0
DYD3_k127_3205456_0 P-aminobenzoate N-oxygenase AurF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 592.0
DYD3_k127_3205456_1 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000006107 199.0
DYD3_k127_3205456_2 Exporters of the RND superfamily K07003 - - 0.000000000000000000003294 98.0
DYD3_k127_3218317_0 Dihydrodipicolinate reductase, C-terminus K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005281 325.0
DYD3_k127_3218317_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000001075 245.0
DYD3_k127_3218317_2 Integral membrane protein (DUF2244) - - - 0.000000000000000000000000000000005507 134.0
DYD3_k127_3218317_3 YGGT family K02221 - - 0.00000000000000000000002184 104.0
DYD3_k127_3218317_4 DUF167 K09131 - - 0.00000000000000000000002278 109.0
DYD3_k127_3218317_5 - - - - 0.00000000000002208 81.0
DYD3_k127_3226719_0 B12 binding domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 558.0
DYD3_k127_3226719_1 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000000000000005932 221.0
DYD3_k127_3226719_2 Transcriptional - - - 0.0000000000000000000000000000000000009098 141.0
DYD3_k127_3231886_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2189.0
DYD3_k127_3231886_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 342.0
DYD3_k127_3231886_2 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. K02601 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 292.0
DYD3_k127_3231886_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000003642 261.0
DYD3_k127_3231886_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000004945 216.0
DYD3_k127_3231886_5 Ribosomal protein L10 K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000001371 208.0
DYD3_k127_3231886_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000002182 164.0
DYD3_k127_3231886_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000001216 138.0
DYD3_k127_3231886_8 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000002365 61.0
DYD3_k127_323224_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.97e-203 642.0
DYD3_k127_323224_1 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 458.0
DYD3_k127_323224_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 310.0
DYD3_k127_323224_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0033554,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 310.0
DYD3_k127_323224_4 COG0303 Molybdopterin biosynthesis enzyme K03750 - 2.10.1.1 0.0000002775 53.0
DYD3_k127_3236095_0 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 309.0
DYD3_k127_3236095_1 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000257 121.0
DYD3_k127_3242632_0 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000006746 198.0
DYD3_k127_325119_0 Transglutaminase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 508.0
DYD3_k127_325119_1 Strictosidine synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 324.0
DYD3_k127_325119_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000003482 205.0
DYD3_k127_325119_3 Response regulator, receiver - - - 0.00000000000002182 76.0
DYD3_k127_325119_4 FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3- polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin ferredoxin reductase system to COQ6 - - - 0.0000004719 62.0
DYD3_k127_3255410_0 Belongs to the heat shock protein 70 family K04046 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004283 426.0
DYD3_k127_3255410_1 haloacid dehalogenase-like hydrolase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006997 288.0
DYD3_k127_3255410_2 prohibitin homologues - - - 0.0000000000000009697 87.0
DYD3_k127_3272739_0 belongs to the aldehyde dehydrogenase family K00154,K22445 - 1.2.1.68,1.2.99.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 526.0
DYD3_k127_3272739_1 transcriptional regulator K03719 - - 0.00000000000000000000000000000000000707 141.0
DYD3_k127_3284754_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 368.0
DYD3_k127_3284754_1 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000004284 207.0
DYD3_k127_3284754_2 Glutamine synthetase, catalytic domain - - - 0.0000000000000000000000000000000000000000000009403 170.0
DYD3_k127_3284754_3 PFAM FAD linked oxidase domain protein K00803 - 2.5.1.26 0.000000000000000000000000000000006041 131.0
DYD3_k127_3298762_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 2.518e-228 718.0
DYD3_k127_3298762_1 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 450.0
DYD3_k127_329916_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008872 374.0
DYD3_k127_329916_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 316.0
DYD3_k127_329916_2 Iron compound ABC transporter, ATP-binding protein K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000002174 258.0
DYD3_k127_330865_0 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001826 281.0
DYD3_k127_330865_1 Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005161 258.0
DYD3_k127_3309386_0 COG2211 Na melibiose symporter and related transporters - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005956 241.0
DYD3_k127_3309386_1 cheY-homologous receiver domain - - - 0.000000000000000000007641 98.0
DYD3_k127_331540_0 COG3104 Dipeptide tripeptide permease K03305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 486.0
DYD3_k127_331540_1 Belongs to the ompA family - - - 0.00001681 50.0
DYD3_k127_3317722_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004599 275.0
DYD3_k127_3317722_1 Ser-tRNA(Ala) hydrolase activity K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000001273 209.0
DYD3_k127_3317722_2 Belongs to the enoyl-CoA hydratase isomerase family K00022,K07514 - 1.1.1.35,4.2.1.17,5.3.3.8 0.00000000000000000000000001821 108.0
DYD3_k127_3317722_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000000001925 102.0
DYD3_k127_3339914_0 Belongs to the SOS response-associated peptidase family - - - 0.0000000000000000000000000000000000000000000000000000001924 203.0
DYD3_k127_3339914_1 - - - - 0.0000000000000002734 93.0
DYD3_k127_3339914_2 Cytochrome c - - - 0.0000000000008206 70.0
DYD3_k127_3346602_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008661 407.0
DYD3_k127_3346602_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000001242 88.0
DYD3_k127_3349406_0 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000002368 249.0
DYD3_k127_3349406_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000003261 110.0
DYD3_k127_335078_0 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000003831 253.0
DYD3_k127_335078_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000003985 216.0
DYD3_k127_335078_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000007311 211.0
DYD3_k127_3363297_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 354.0
DYD3_k127_3363297_1 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000002823 194.0
DYD3_k127_3363297_2 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000005508 190.0
DYD3_k127_3363297_3 Two component signalling adaptor domain K03408 - - 0.00000000000000000000000000000000000000005337 165.0
DYD3_k127_3366479_0 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000811 283.0
DYD3_k127_3368486_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 1.309e-233 729.0
DYD3_k127_3368486_1 Aldehyde dehydrogenase family - - - 8.438e-227 713.0
DYD3_k127_3368486_2 alcohol dehydrogenase K00100 - - 0.0000000000000000000001987 98.0
DYD3_k127_3368486_3 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.0000000000000003769 83.0
DYD3_k127_3381364_0 Tetratricopeptide repeat K03671,K05838 - - 0.00000000000000000000000000000000000000000000000000000001266 201.0
DYD3_k127_3381364_1 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000000000000000007114 188.0
DYD3_k127_3381364_2 WD40-like Beta Propeller Repeat - - - 0.000000000004853 74.0
DYD3_k127_3385374_0 Belongs to the HesB IscA family K13628 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0031163,GO:0031974,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000001277 176.0
DYD3_k127_3385374_1 FeS assembly SUF system protein - - - 0.00000000000000000000000000000000000000000001451 164.0
DYD3_k127_3385374_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000006647 156.0
DYD3_k127_3385374_3 - - - - 0.00000000000000000000000000000000000000465 157.0
DYD3_k127_3385374_4 regulator of competence-specific genes K07343 - - 0.000000000000000000000000000202 119.0
DYD3_k127_3411030_0 ABC transporter transmembrane region K06148 - - 1.083e-205 655.0
DYD3_k127_3411030_1 Type I secretion membrane fusion protein, HlyD K02022 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 456.0
DYD3_k127_3411030_2 hypochlorous acid biosynthetic process K00431,K10788,K10789 GO:0000302,GO:0000303,GO:0000305,GO:0000323,GO:0001775,GO:0001817,GO:0001818,GO:0001819,GO:0001878,GO:0002148,GO:0002149,GO:0002215,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002679,GO:0003674,GO:0003682,GO:0003824,GO:0004601,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0006082,GO:0006801,GO:0006810,GO:0006887,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0008201,GO:0009056,GO:0009058,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009636,GO:0009987,GO:0010035,GO:0010941,GO:0012505,GO:0016043,GO:0016192,GO:0016209,GO:0016477,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032653,GO:0032673,GO:0032674,GO:0032693,GO:0032714,GO:0032753,GO:0032940,GO:0033554,GO:0034367,GO:0034368,GO:0034369,GO:0034374,GO:0034599,GO:0034614,GO:0034774,GO:0035578,GO:0036230,GO:0040008,GO:0040011,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042742,GO:0042743,GO:0042744,GO:0042981,GO:0043062,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044248,GO:0044281,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045730,GO:0045926,GO:0046903,GO:0048518,GO:0048519,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0050900,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0060205,GO:0060548,GO:0065007,GO:0070013,GO:0070887,GO:0071450,GO:0071451,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0072593,GO:0072677,GO:0097006,GO:0097237,GO:0097367,GO:0097529,GO:0097530,GO:0097708,GO:0098542,GO:0098754,GO:0098869,GO:0099503,GO:1901681,GO:1901700,GO:1901701,GO:1903409,GO:1990748 1.11.1.7,1.11.1.8,1.11.2.2 0.0000000000000000000000002604 119.0
DYD3_k127_3417159_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009653 516.0
DYD3_k127_3417159_1 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000412 118.0
DYD3_k127_3423395_0 FAD dependent oxidoreductase K09471 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 415.0
DYD3_k127_3423395_1 - - - - 0.00000000000000000000000000000005685 135.0
DYD3_k127_3423395_2 Protein of unknown function (DUF3126) - - - 0.0000000000000000008274 98.0
DYD3_k127_3423395_3 Serine acetyltransferase, N-terminal K00640 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009314,GO:0009333,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.3.1.30 0.00000000000000000362 84.0
DYD3_k127_3447371_0 Methylmalonyl-CoA mutase K14447 - 5.4.99.63 6.609e-288 905.0
DYD3_k127_3447371_1 Alcohol dehydrogenase GroES-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 319.0
DYD3_k127_3447371_2 Transcriptional regulator K03566 - - 0.000000000000000000000000000009084 122.0
DYD3_k127_3455030_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 352.0
DYD3_k127_3455030_1 Phytochelatin synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002237 282.0
DYD3_k127_3455030_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000004447 130.0
DYD3_k127_3455030_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000005406 72.0
DYD3_k127_3458524_0 cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 482.0
DYD3_k127_3458524_1 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004359 272.0
DYD3_k127_3458524_2 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000001169 171.0
DYD3_k127_3458524_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000003772 137.0
DYD3_k127_3476223_0 Dehydratase family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 482.0
DYD3_k127_3476223_1 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004811 273.0
DYD3_k127_3476223_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000001381 170.0
DYD3_k127_350731_0 Major Facilitator - - - 2.412e-213 677.0
DYD3_k127_350731_1 Glutathione S-transferase, C-terminal domain K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000002291 274.0
DYD3_k127_350731_2 response regulator K02485 - - 0.0000000000000000000000000000000000000000004911 161.0
DYD3_k127_350731_3 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000002875 133.0
DYD3_k127_350731_4 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000001346 131.0
DYD3_k127_350731_5 Glycosyl transferase, family 2 - - - 0.00000000000000000000000001007 112.0
DYD3_k127_350731_6 - - - - 0.000000000000000000000001962 119.0
DYD3_k127_350731_7 YCII-related domain - - - 0.000000000000000000000005605 104.0
DYD3_k127_35090_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008059 572.0
DYD3_k127_35090_1 Enoyl-CoA hydratase/isomerase K01692,K05605 - 3.1.2.4,4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003737 409.0
DYD3_k127_35090_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 393.0
DYD3_k127_35090_3 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.000000000000000000000000000000000000004061 149.0
DYD3_k127_35090_4 PAS domain - - - 0.0000000003312 67.0
DYD3_k127_35090_5 Bacterial regulatory protein, Fis family - - - 0.000000001255 62.0
DYD3_k127_3512277_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 332.0
DYD3_k127_3512277_1 endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008941 313.0
DYD3_k127_3512277_10 Methylmalonyl-CoA mutase K14447 - 5.4.99.63 0.0000000000000006896 78.0
DYD3_k127_3512277_11 - - - - 0.000000000000002355 83.0
DYD3_k127_3512277_2 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002748 283.0
DYD3_k127_3512277_3 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000008098 218.0
DYD3_k127_3512277_4 - - - - 0.000000000000000000000000000000000000000000000000000001415 199.0
DYD3_k127_3512277_5 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000006931 186.0
DYD3_k127_3512277_6 histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000003031 135.0
DYD3_k127_3512277_7 Protein of unknown function (DUF1761) - - - 0.000000000000000000000000000000191 130.0
DYD3_k127_3512277_8 Disulfide bond formation protein DsbB K03611 - - 0.0000000000000000000000000000006908 128.0
DYD3_k127_3512277_9 - - - - 0.0000000000000000000000000663 120.0
DYD3_k127_3516246_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K00990 GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007088 597.0
DYD3_k127_3516246_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008625 489.0
DYD3_k127_3516246_10 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000003074 100.0
DYD3_k127_3516246_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 291.0
DYD3_k127_3516246_3 Nitroreductase family K09019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006949 277.0
DYD3_k127_3516246_4 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006846 269.0
DYD3_k127_3516246_5 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001704 280.0
DYD3_k127_3516246_6 iron transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009995 256.0
DYD3_k127_3516246_7 Ferric uptake regulator family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000002509 219.0
DYD3_k127_3516246_8 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000001913 187.0
DYD3_k127_3516246_9 COG1214 Inactive homolog of metal-dependent proteases K01409,K14742 - 2.3.1.234 0.00000000000000000000000009131 122.0
DYD3_k127_3518247_0 COG2217 Cation transport ATPase K01533 GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070588,GO:0070838,GO:0071944,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.4 9.38e-218 698.0
DYD3_k127_3518247_1 Cytochrome c oxidase accessory protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 9.912e-194 617.0
DYD3_k127_3518247_2 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005937 385.0
DYD3_k127_3518247_3 TIGRFAM cytochrome c oxidase, cbb3-type, subunit II K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 382.0
DYD3_k127_3518247_4 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 310.0
DYD3_k127_3518247_5 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000006813 243.0
DYD3_k127_3518247_6 FixH - - - 0.000000000000000000000006083 107.0
DYD3_k127_3518247_7 cytochrome oxidase maturation protein - - - 0.0000000000001519 71.0
DYD3_k127_3518247_8 Cbb3-type cytochrome oxidase component FixQ K00407 - - 0.0000000000006743 69.0
DYD3_k127_3518247_9 PFAM Sel1 domain protein repeat-containing protein K07126 - - 0.00000000002094 76.0
DYD3_k127_3528880_0 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 9.786e-239 752.0
DYD3_k127_3528880_1 Iron permease FTR1 family K07243 - - 0.00000000000003244 76.0
DYD3_k127_3528880_2 Lysin motif - - - 0.0000000000009018 70.0
DYD3_k127_353293_0 ABC transporter transmembrane region K02021 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 417.0
DYD3_k127_353293_1 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000001806 161.0
DYD3_k127_353293_2 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000001179 143.0
DYD3_k127_3546733_0 Adenylosuccinate lyase C-terminus K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 410.0
DYD3_k127_3546733_1 Aminotransferase class-III K00596,K07250 - 2.6.1.19,2.6.1.22,4.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009809 355.0
DYD3_k127_3563255_0 COG1960 Acyl-CoA dehydrogenases K09456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005676 608.0
DYD3_k127_3568522_0 helicase K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 545.0
DYD3_k127_3590338_0 PFAM AMP-dependent synthetase and ligase K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002725 256.0
DYD3_k127_3612783_0 Major Facilitator Superfamily K02575 - - 0.0 1383.0
DYD3_k127_3612783_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370 - 1.7.5.1 0.000000000000000000000000000000000000000002448 155.0
DYD3_k127_3623304_0 Molybdopterin oxidoreductase Fe4S4 domain K00370 - 1.7.5.1 4.415e-317 976.0
DYD3_k127_3623372_0 Nucleotidyl transferase K00978 - 2.7.7.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 415.0
DYD3_k127_3623372_1 glycosyl transferase - - - 0.00000000000000000000000000000000000000001079 165.0
DYD3_k127_3623372_2 GDP-mannose 4,6 dehydratase K01709 - 4.2.1.45 0.000000000000000000000000000000000000009272 150.0
DYD3_k127_3623372_3 Sulfotransferase family - - - 0.0002091 50.0
DYD3_k127_3638201_0 dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 434.0
DYD3_k127_3638201_1 Methyltransferase - - - 0.00000000000000000000000000000000000000000000002107 190.0
DYD3_k127_3638201_2 Transcriptional regulator - - - 0.00000000000000000000000000004438 126.0
DYD3_k127_3638201_3 Alpha beta hydrolase - - - 0.0000000000000000000000000009672 113.0
DYD3_k127_3638775_0 Thymidine phosphorylase K00758 GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016757,GO:0016758,GO:0044424,GO:0044444,GO:0044464 2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 283.0
DYD3_k127_3638775_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004897 250.0
DYD3_k127_365062_0 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000231 216.0
DYD3_k127_365062_1 - - - - 0.000000000000000000000000000000000000000007358 157.0
DYD3_k127_365062_2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K16872 - 2.3.1.207 0.00000000000000000000006287 98.0
DYD3_k127_3652563_0 DNA restriction-modification system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 308.0
DYD3_k127_3652563_1 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001296 229.0
DYD3_k127_3652563_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000065 114.0
DYD3_k127_3652563_3 Outer membrane protein beta-barrel domain K16079 - - 0.0000000000000000000007113 106.0
DYD3_k127_3659878_0 - - - - 0.000000000000000000000000000000000000000000002462 182.0
DYD3_k127_3659878_1 COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - - - 0.00000000000000000000000000000000000000000001331 177.0
DYD3_k127_3659878_2 - - - - 0.0000000000000000000000000000000000005147 151.0
DYD3_k127_3659878_3 Diguanylate cyclase (GGDEF) domain - - - 0.0000005374 55.0
DYD3_k127_3662465_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 1.571e-271 858.0
DYD3_k127_3662465_1 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000002183 178.0
DYD3_k127_3663737_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K05939 - 2.3.1.40,6.2.1.20 5.314e-223 702.0
DYD3_k127_3663737_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005329 374.0
DYD3_k127_3663737_2 tail specific protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 295.0
DYD3_k127_366715_0 Inosine-uridine preferring nucleoside hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000001057 224.0
DYD3_k127_366715_1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000004482 101.0
DYD3_k127_366715_2 Lipopolysaccharide assembly protein A domain - - - 0.000000000005232 70.0
DYD3_k127_3683416_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0022900,GO:0022904,GO:0034220,GO:0044237,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600 1.9.3.1 2.309e-302 932.0
DYD3_k127_3683416_1 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 402.0
DYD3_k127_3683416_2 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 311.0
DYD3_k127_3683416_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 314.0
DYD3_k127_3683416_4 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000007023 266.0
DYD3_k127_3683416_5 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.0000000000000000000000000000000000000000000000000000000004243 207.0
DYD3_k127_3683416_6 Protein of unknown function (DUF983) - - - 0.00000000000000000000000000000000000008012 145.0
DYD3_k127_3683416_7 SURF1 family K14998 - - 0.000000000000000000000000000000001875 139.0
DYD3_k127_3683416_8 peptidase U62, modulator of DNA gyrase K03568 - - 0.000000000000000000000000000006919 121.0
DYD3_k127_3683416_9 - - - - 0.00004198 55.0
DYD3_k127_3684080_0 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005847 530.0
DYD3_k127_3684080_1 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000005584 145.0
DYD3_k127_3684080_2 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000005488 84.0
DYD3_k127_3686301_0 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006671 336.0
DYD3_k127_3686301_1 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001393 268.0
DYD3_k127_3686301_2 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003142 240.0
DYD3_k127_3686301_3 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000000000003522 188.0
DYD3_k127_3686301_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000001216 138.0
DYD3_k127_3686301_5 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001785 133.0
DYD3_k127_3687552_1 Transcriptional regulator K07782,K15852,K18098,K18099,K18304,K19734 - - 0.0000000000000005113 88.0
DYD3_k127_3687552_2 cheY-homologous receiver domain - - - 0.00000000000227 70.0
DYD3_k127_3694435_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 497.0
DYD3_k127_3694435_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 472.0
DYD3_k127_3694435_2 Cell division protein FtsQ K03589 - - 0.000000000000000000000000000000000000000000000000000000000001041 220.0
DYD3_k127_3694435_3 Transcriptional regulator - - - 0.00000000000000000000000005115 109.0
DYD3_k127_3698909_0 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 398.0
DYD3_k127_3698909_1 PFAM NAD-dependent epimerase dehydratase K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000855 320.0
DYD3_k127_3698909_2 3'-5' exonuclease K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 302.0
DYD3_k127_3698909_3 Dihydropyrimidine dehydrogenase subunit A K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002939 272.0
DYD3_k127_3698909_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000001193 268.0
DYD3_k127_3698909_5 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000002242 58.0
DYD3_k127_3700642_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00410,K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 603.0
DYD3_k127_3700642_1 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000008074 243.0
DYD3_k127_3700642_2 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000003107 197.0
DYD3_k127_3700642_3 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000005932 87.0
DYD3_k127_3703624_0 Polysaccharide deacetylase - - - 0.00000005421 60.0
DYD3_k127_3703624_1 - - - - 0.0000327 56.0
DYD3_k127_3706035_0 Sigma-54 interaction domain K07712 - - 1.054e-225 709.0
DYD3_k127_3706035_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K13598 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 530.0
DYD3_k127_3706035_2 PAS fold K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007654 440.0
DYD3_k127_3706035_3 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 381.0
DYD3_k127_3706035_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004032 308.0
DYD3_k127_3709347_0 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 483.0
DYD3_k127_3709347_1 unusual protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898 346.0
DYD3_k127_3709347_2 Thioesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000007766 237.0
DYD3_k127_3731613_0 Redoxin - - - 0.000000000000000000000000000000000000000000002829 171.0
DYD3_k127_3731613_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000000004029 171.0
DYD3_k127_3731613_2 PFAM Tetratricopeptide repeat - - - 0.000000000000000000000000000000009255 138.0
DYD3_k127_3732566_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 413.0
DYD3_k127_3732566_1 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008316 366.0
DYD3_k127_3732566_2 N-formylglutamate amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000663 293.0
DYD3_k127_3732566_3 Protein of unknown function (DUF1244) K09948 - - 0.00000000000000000000000000000000001349 143.0
DYD3_k127_3732566_4 Belongs to the UPF0335 family - - - 0.000000000000000000000000008084 111.0
DYD3_k127_3732566_5 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000003568 92.0
DYD3_k127_3744659_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 305.0
DYD3_k127_3744659_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000236 289.0
DYD3_k127_3756153_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004208 331.0
DYD3_k127_3756153_1 YHS domain protein - - - 0.0000000000000000000000000000000000000000000000000000001432 199.0
DYD3_k127_3756153_2 beta-N-acetylglucosaminidase K01197 - 3.2.1.35 0.00000000000000000000000000000000004043 136.0
DYD3_k127_3756153_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000001536 142.0
DYD3_k127_3756153_4 Protein of unknown function (DUF1109) - - - 0.000000000000000003019 93.0
DYD3_k127_3769581_0 GMC oxidoreductase K00108 - 1.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 401.0
DYD3_k127_3769581_1 Enoyl-CoA hydratase/isomerase K08299 - 4.2.1.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 378.0
DYD3_k127_3769581_2 PilZ domain - - - 0.000000000000000000000000000000004024 136.0
DYD3_k127_3769581_3 Glycine zipper 2TM domain - - - 0.000000000000000000000003588 111.0
DYD3_k127_3769581_4 - - - - 0.0000000000000000006748 93.0
DYD3_k127_38021_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 6.977e-205 667.0
DYD3_k127_38021_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 533.0
DYD3_k127_38021_10 4 iron, 4 sulfur cluster binding - - - 0.00000000000000000000001242 102.0
DYD3_k127_38021_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 321.0
DYD3_k127_38021_3 Hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008737 295.0
DYD3_k127_38021_4 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 286.0
DYD3_k127_38021_5 O-Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001458 261.0
DYD3_k127_38021_6 Ubiquinone biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001004 234.0
DYD3_k127_38021_7 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000002027 205.0
DYD3_k127_38021_8 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000002992 181.0
DYD3_k127_38021_9 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.00000000000000000000000000000000003466 144.0
DYD3_k127_3814801_0 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004313 518.0
DYD3_k127_3814801_1 PFAM O-methyltransferase K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000003242 249.0
DYD3_k127_3814801_2 Belongs to the BI1 family K06890 - - 0.00000000000000000000000000000000000000000000000000000000000001556 226.0
DYD3_k127_3814801_3 Protein of unknown function (DUF2794) - - - 0.000000000000000000000000000000000002215 142.0
DYD3_k127_3814801_4 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000000000000001064 135.0
DYD3_k127_3820892_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 494.0
DYD3_k127_3820892_1 Ring hydroxylating alpha subunit (catalytic domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 367.0
DYD3_k127_3820892_2 Putative modulator of DNA gyrase K03568 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000004032 137.0
DYD3_k127_3832034_0 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 1.334e-283 893.0
DYD3_k127_3832034_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 6.962e-227 734.0
DYD3_k127_3832034_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 422.0
DYD3_k127_3832034_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 420.0
DYD3_k127_3832034_4 PFAM Aminotransferase class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 404.0
DYD3_k127_3832034_5 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 395.0
DYD3_k127_3832034_6 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 350.0
DYD3_k127_3832034_7 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000001584 188.0
DYD3_k127_3833187_0 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 426.0
DYD3_k127_3833187_1 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 373.0
DYD3_k127_3833187_2 Cytidylyltransferase K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 338.0
DYD3_k127_3833187_3 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 334.0
DYD3_k127_3833187_4 Cytochrome c K08738 - - 0.00000000000000000000000000000001224 138.0
DYD3_k127_3836100_0 Helicase K03724 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 495.0
DYD3_k127_3836100_1 ATP-dependent helicase K03579 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 433.0
DYD3_k127_3836100_2 low-complexity proteins - - - 0.00000000000000000000003283 111.0
DYD3_k127_3836100_3 low-complexity proteins - - - 0.0000000000000002069 90.0
DYD3_k127_3857854_0 acetyl-CoA C-acyltransferase activity K07513 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 575.0
DYD3_k127_3857854_1 cytochrome c biogenesis protein K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 571.0
DYD3_k127_3857854_2 Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007199 409.0
DYD3_k127_3857854_3 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000004129 224.0
DYD3_k127_3857854_4 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000000000000003248 156.0
DYD3_k127_3857854_5 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000005182 139.0
DYD3_k127_3857854_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000006518 115.0
DYD3_k127_3857854_7 3-oxo-5-alpha-steroid 4-dehydrogenase K12343 - 1.3.1.22 0.0000000001119 62.0
DYD3_k127_3857854_8 SnoaL-like domain - - - 0.00000001025 61.0
DYD3_k127_3857854_9 SnoaL-like domain - - - 0.0009762 49.0
DYD3_k127_3868438_0 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 403.0
DYD3_k127_3868438_1 Oxidoreductase molybdopterin binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006472 299.0
DYD3_k127_3868438_2 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000399 245.0
DYD3_k127_3868438_3 Glycosyl transferase group 2 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000879 233.0
DYD3_k127_3868438_4 Secreted and surface protein containing fasciclin-like repeats K19519 - - 0.00000000000000000000000000000000000000000000000000000000000000003012 233.0
DYD3_k127_3868438_5 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.00000000000000000000000000000000000000000002977 168.0
DYD3_k127_3868438_6 Ceramidase - - - 0.0007338 47.0
DYD3_k127_3929192_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 461.0
DYD3_k127_3929192_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 428.0
DYD3_k127_3929192_2 Ubiquinol-cytochrome C chaperone K17662 - - 0.0000000000000000000000000000000000275 141.0
DYD3_k127_3929192_3 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000000000003789 126.0
DYD3_k127_3929192_4 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000000000005511 99.0
DYD3_k127_3933607_0 secretion system protein K02283 - - 2.109e-219 683.0
DYD3_k127_3933607_1 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002192 273.0
DYD3_k127_3935420_0 Platelet-activating factor acetylhydrolase, isoform II - - - 0.00000000000000000000000000000000000000000000000000000001989 211.0
DYD3_k127_3935420_1 Protein of unknown function (DUF1491) - - - 0.000000000000000000000000001314 115.0
DYD3_k127_3940312_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 481.0
DYD3_k127_3940312_1 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000001785 174.0
DYD3_k127_3940312_2 LysR substrate binding domain K03566 - - 0.0000000000000000000000001977 108.0
DYD3_k127_3941205_0 aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007333 523.0
DYD3_k127_3941205_1 elongation factor G K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 357.0
DYD3_k127_3943283_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 507.0
DYD3_k127_3943283_1 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 367.0
DYD3_k127_3943283_2 Ribosomal protein S6 K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000003339 155.0
DYD3_k127_3943283_3 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000004848 139.0
DYD3_k127_394585_0 Aspartyl protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009952 363.0
DYD3_k127_394585_1 Excinuclease ABC, C subunit K07461 - - 0.000000000001046 68.0
DYD3_k127_3950532_0 TIGRFAM methylmalonic acid semialdehyde dehydrogenase K00140 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896 1.2.1.18,1.2.1.27 1.093e-271 841.0
DYD3_k127_3950532_1 AFG1-like ATPase K06916 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030163,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0035694,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071840,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000002679 109.0
DYD3_k127_3950532_2 protein conserved in bacteria - - - 0.0000000000001988 78.0
DYD3_k127_3961374_0 lysine 2,3-aminomutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 593.0
DYD3_k127_3961374_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 349.0
DYD3_k127_3961374_10 endoribonuclease L-PSP - - - 0.00000003861 56.0
DYD3_k127_3961374_2 CorA-like Mg2+ transporter protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 314.0
DYD3_k127_3961374_3 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 289.0
DYD3_k127_3961374_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001528 264.0
DYD3_k127_3961374_5 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000004819 252.0
DYD3_k127_3961374_6 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000009327 242.0
DYD3_k127_3961374_7 Histone deacetylase - - - 0.000000000000000000000000000000005015 138.0
DYD3_k127_3961374_8 endoribonuclease L-PSP - - - 0.00000000003605 67.0
DYD3_k127_3961374_9 Domain of unknown function (DUF4282) - - - 0.000000004419 62.0
DYD3_k127_3972300_0 diguanylate cyclase K07216,K13590 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003252 275.0
DYD3_k127_3972300_1 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002349 271.0
DYD3_k127_3972300_2 Enoyl-CoA hydratase K15866 - 5.3.3.18 0.0000000002008 61.0
DYD3_k127_3973569_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 1.472e-231 736.0
DYD3_k127_3973569_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000002228 166.0
DYD3_k127_3973569_2 domain, Protein - - - 0.0000000000000001909 84.0
DYD3_k127_3973569_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000634 59.0
DYD3_k127_3974994_0 DnaJ C terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001393 261.0
DYD3_k127_3974994_1 Putative member of DMT superfamily (DUF486) K09922 - - 0.0000000000000000000000000000000000000000000000002862 178.0
DYD3_k127_3974994_2 MerR HTH family regulatory protein K18997 - - 0.0000000000000000000007497 99.0
DYD3_k127_3986599_0 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005917 387.0
DYD3_k127_3986599_1 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000009207 179.0
DYD3_k127_3986599_2 FR47-like protein - - - 0.00000000000000000000001269 100.0
DYD3_k127_4007451_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 441.0
DYD3_k127_4007451_1 Penicillin-binding protein, 1A family K05366 - 2.4.1.129,3.4.16.4 0.00000000000000006178 85.0
DYD3_k127_4007837_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 8.589e-199 629.0
DYD3_k127_4007837_1 Fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 440.0
DYD3_k127_4007837_2 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 319.0
DYD3_k127_4007837_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001986 233.0
DYD3_k127_4007837_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000018 171.0
DYD3_k127_4007837_5 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000001818 164.0
DYD3_k127_4007837_6 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000001982 158.0
DYD3_k127_4007837_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000007517 157.0
DYD3_k127_4025297_0 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000003203 269.0
DYD3_k127_4025297_1 Hypoxia induced protein conserved region - - - 0.0000000000001383 72.0
DYD3_k127_4025297_2 Putative bacterial sensory transduction regulator - - - 0.0001057 51.0
DYD3_k127_4030130_0 Histidine kinase K07716 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000126 233.0
DYD3_k127_4030130_1 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000003735 191.0
DYD3_k127_4030130_2 Bacterial protein of unknown function (DUF934) - - - 0.000000000000000000000000000000000000000000000000816 181.0
DYD3_k127_4030130_3 PFAM nitrite sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein K00381 - 1.8.1.2 0.00003522 46.0
DYD3_k127_4044541_0 PFAM major facilitator superfamily MFS_1 - - - 3.465e-203 644.0
DYD3_k127_4044541_1 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 433.0
DYD3_k127_4044541_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000007945 153.0
DYD3_k127_4044541_3 SnoaL-like domain - - - 0.000000037 61.0
DYD3_k127_4060654_0 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000003817 218.0
DYD3_k127_4060654_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000001964 183.0
DYD3_k127_4060654_2 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000000000000000000005073 175.0
DYD3_k127_4063401_0 Belongs to the cytochrome P450 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 487.0
DYD3_k127_4063401_1 Carboxyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001543 256.0
DYD3_k127_4068974_0 PQQ-like domain K17713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 509.0
DYD3_k127_4068974_1 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006767 418.0
DYD3_k127_4085383_0 Ferritin-like K20087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008248 488.0
DYD3_k127_4085383_1 Pyridoxal-phosphate dependent enzyme K01505,K05396,K17950 - 3.5.99.7,4.4.1.15,4.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 295.0
DYD3_k127_4085383_2 CorA-like Mg2+ transporter protein K16074 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0022883,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046583,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001333 283.0
DYD3_k127_4085383_3 COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - - - 0.00000000000000000000000000000000000000000000000000000000004505 209.0
DYD3_k127_4085383_4 Globin - - - 0.0000000000000000000000000000000000000000000007768 169.0
DYD3_k127_4090661_0 GH3 auxin-responsive promoter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 604.0
DYD3_k127_4090661_1 Penicillin amidase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 493.0
DYD3_k127_4090661_2 belongs to the carbohydrate kinase PfkB family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 368.0
DYD3_k127_4120652_0 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000271 280.0
DYD3_k127_4120652_1 cheY-homologous receiver domain - - - 0.00000000000000000000000000004034 128.0
DYD3_k127_4120652_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000001233 106.0
DYD3_k127_4120652_3 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00001219 52.0
DYD3_k127_4125566_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.842e-261 811.0
DYD3_k127_4125566_1 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 426.0
DYD3_k127_4125566_2 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007916 375.0
DYD3_k127_4125566_3 MAPEG family K00799 - 2.5.1.18 0.00000000000000000000000000000000000003779 147.0
DYD3_k127_412880_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 441.0
DYD3_k127_412880_1 Peptidase family S58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 338.0
DYD3_k127_412880_2 - - - - 0.000000000005704 72.0
DYD3_k127_4142030_0 Transport of potassium into the cell K03549 - - 5.042e-205 655.0
DYD3_k127_4142030_1 Belongs to the HpcH HpaI aldolase family K08691 GO:0003674,GO:0003824,GO:0005488,GO:0016829,GO:0016830,GO:0016833,GO:0043167,GO:0043169,GO:0046872,GO:0047777,GO:0050083 4.1.3.24,4.1.3.25 0.0002177 44.0
DYD3_k127_415439_0 Bacterial transferase hexapeptide (six repeats) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006284 269.0
DYD3_k127_415439_1 - - - - 0.000000000000000000000000000000000000000000000000000007113 205.0
DYD3_k127_415439_3 Belongs to the ompA family - - - 0.000000000000000000000000000000008299 137.0
DYD3_k127_415439_4 Sugar efflux transporter for intercellular exchange K15383 - - 0.000000000000000000001678 96.0
DYD3_k127_415439_5 PAS domain - - - 0.00000000000000000001524 99.0
DYD3_k127_415439_6 GMC oxidoreductase K00108 - 1.1.99.1 0.00000000000089 68.0
DYD3_k127_4161115_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 537.0
DYD3_k127_4161115_1 - - - - 0.000000000000000000000000000000000000000000000000001526 196.0
DYD3_k127_4161115_2 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000001198 117.0
DYD3_k127_4161115_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000004094 94.0
DYD3_k127_4161115_4 - - - - 0.00000000000001968 78.0
DYD3_k127_4162730_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000176 266.0
DYD3_k127_4162730_1 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000007421 145.0
DYD3_k127_4200263_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 8.916e-315 972.0
DYD3_k127_4215006_0 NADP-dependent oxidoreductase K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006176 479.0
DYD3_k127_4215006_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 402.0
DYD3_k127_421894_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 295.0
DYD3_k127_421894_1 Tellurite resistance protein TerB K05801 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007373 285.0
DYD3_k127_421894_2 N-acetylmuramoyl-L-alanine amidase K01447 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001024 284.0
DYD3_k127_421894_3 PFAM thioesterase superfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000347 212.0
DYD3_k127_421894_4 - - - - 0.0000000000000000000000000001046 120.0
DYD3_k127_4220539_0 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 597.0
DYD3_k127_4220539_1 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 479.0
DYD3_k127_4220539_2 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244,K19743 - 1.4.1.1,1.5.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 354.0
DYD3_k127_4220539_3 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000006803 191.0
DYD3_k127_4229793_0 Beta-eliminating lyase K01738,K01740 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47,2.5.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 457.0
DYD3_k127_4229793_1 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000001994 249.0
DYD3_k127_4229793_2 Autoinducer K18096 - 2.3.1.228,2.3.1.229 0.0000000000000000000000000000000002789 140.0
DYD3_k127_4229793_3 Autoinducer binding domain K18098 - - 0.0000000000000000000000002718 116.0
DYD3_k127_4229793_4 Methyltransferase - - - 0.00000000000000000002179 91.0
DYD3_k127_4229793_5 Helix-turn-helix domain - - - 0.0000007086 58.0
DYD3_k127_424288_0 AMP-binding enzyme K00666 - - 1.514e-245 771.0
DYD3_k127_424288_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000002567 221.0
DYD3_k127_424288_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000001377 172.0
DYD3_k127_424288_3 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000004041 148.0
DYD3_k127_424288_4 Belongs to the sulfur carrier protein TusA family K04085 - - 0.000000000000001261 79.0
DYD3_k127_4247385_0 COG2902 NAD-specific glutamate dehydrogenase K15371 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0008150,GO:0008152,GO:0016491,GO:0016638,GO:0016639,GO:0055114 1.4.1.2 5.384e-214 684.0
DYD3_k127_4247385_1 EamA-like transporter family - - - 0.00009733 46.0
DYD3_k127_425016_0 Sulfotransferase family - - - 0.0000000004664 69.0
DYD3_k127_425016_1 Methionine biosynthesis protein MetW - - - 0.000005072 56.0
DYD3_k127_4262564_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 4.485e-210 670.0
DYD3_k127_4262564_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 391.0
DYD3_k127_4262564_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007139 329.0
DYD3_k127_4262564_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000002209 212.0
DYD3_k127_4262564_4 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000003917 215.0
DYD3_k127_4267505_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 421.0
DYD3_k127_4267505_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 385.0
DYD3_k127_4267505_2 Protein of unknown function (DUF1328) - - - 0.0000000000001291 73.0
DYD3_k127_4267505_3 - - - - 0.00000006238 55.0
DYD3_k127_4267505_4 - - - - 0.00009202 45.0
DYD3_k127_4268276_0 Histone deacetylase domain K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 403.0
DYD3_k127_4268276_1 protein conserved in bacteria - - - 0.0000000000000000000001326 106.0
DYD3_k127_4268276_2 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00004286 49.0
DYD3_k127_4309065_0 ABC transporter transmembrane region K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001251 284.0
DYD3_k127_4309065_1 ABC transporter transmembrane region K06147 - - 0.000000000000000000000000000000000000000000000000000000000000000000003962 238.0
DYD3_k127_4309065_2 metalloendopeptidase activity K03799,K11749 - - 0.0000000000000000000000000000006254 135.0
DYD3_k127_431271_0 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 402.0
DYD3_k127_431271_1 Belongs to the GST superfamily K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 319.0
DYD3_k127_431271_2 Belongs to the peptidase S41A family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004623 290.0
DYD3_k127_431271_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000005779 100.0
DYD3_k127_431271_4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000005055 66.0
DYD3_k127_4316126_0 Chase2 domain - - - 0.0000000000000000000001029 112.0
DYD3_k127_4316126_1 Peptidase family M48 - - - 0.0000000000006085 81.0
DYD3_k127_4317956_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K02858,K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 535.0
DYD3_k127_4317956_1 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 400.0
DYD3_k127_4317956_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 344.0
DYD3_k127_4317956_3 riboflavin synthase alpha K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000268 272.0
DYD3_k127_4317956_4 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001339 244.0
DYD3_k127_4317956_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000007712 179.0
DYD3_k127_4317956_6 ROS/MUCR transcriptional regulator protein - - - 0.00000000000000000000000000000000000000000000006644 173.0
DYD3_k127_4317956_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000465 151.0
DYD3_k127_4317956_8 - - - - 0.0000000708 60.0
DYD3_k127_4318199_0 DNA polymerase K02337 - 2.7.7.7 3.045e-206 661.0
DYD3_k127_4318199_1 Aminotransferase class I and II - - - 0.0000000000000000000000000000000001702 136.0
DYD3_k127_4347296_0 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000264 275.0
DYD3_k127_4347296_1 Thioesterase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000003701 193.0
DYD3_k127_4347296_2 Cys/Met metabolism PLP-dependent enzyme K01739,K01761 - 2.5.1.48,4.4.1.11 0.0000000000000000000000000000000000000000006321 159.0
DYD3_k127_4362088_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009088 509.0
DYD3_k127_4362088_1 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008139 416.0
DYD3_k127_4362088_2 FecR protein - - - 0.00000000002162 73.0
DYD3_k127_4362088_3 - - - - 0.0001356 53.0
DYD3_k127_4370930_0 Poly A polymerase head domain K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172 469.0
DYD3_k127_4370930_1 ATPase family associated with various cellular activities (AAA) K03924 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008527 402.0
DYD3_k127_4370930_2 Protein of unknown function (DUF1285) K09986 - - 0.00000000000000000000000000000000000000000000000000000000000000000006261 237.0
DYD3_k127_4370930_3 NUDIX domain - - - 0.000000000000000000000000000000000000000000000000000000001421 210.0
DYD3_k127_4370930_4 protein serine/threonine phosphatase activity - - - 0.0000000000000000000000000002367 126.0
DYD3_k127_4371404_0 pyruvate-flavodoxin oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 575.0
DYD3_k127_4371404_1 polyphosphate kinase K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003798 334.0
DYD3_k127_4371404_2 Putative sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000004353 250.0
DYD3_k127_4371404_3 PFAM Kelch - - - 0.000000000000000000000000000000000000000000000000000007168 195.0
DYD3_k127_4371404_4 PadR family transcriptional regulator K10947 - - 0.000000000000000000000000000000003465 132.0
DYD3_k127_4378618_0 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 304.0
DYD3_k127_4378618_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005213 278.0
DYD3_k127_4378618_2 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 0.0000000000000000004806 89.0
DYD3_k127_4380041_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.094e-252 792.0
DYD3_k127_4380041_1 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000003374 191.0
DYD3_k127_4380041_2 FR47-like protein - - - 0.000000000000000000000001097 117.0
DYD3_k127_438706_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009392 428.0
DYD3_k127_438706_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000001745 177.0
DYD3_k127_439167_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 5.187e-194 616.0
DYD3_k127_439167_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 443.0
DYD3_k127_439167_10 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000000006193 77.0
DYD3_k127_439167_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 366.0
DYD3_k127_439167_3 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003998 282.0
DYD3_k127_439167_4 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007572 269.0
DYD3_k127_439167_5 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002147 251.0
DYD3_k127_439167_6 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000006452 249.0
DYD3_k127_439167_7 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000302 177.0
DYD3_k127_439167_8 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000000007224 119.0
DYD3_k127_439167_9 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000004994 111.0
DYD3_k127_439173_0 Cupin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 363.0
DYD3_k127_439173_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 335.0
DYD3_k127_439173_2 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000000000000000002884 214.0
DYD3_k127_439173_3 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000007116 207.0
DYD3_k127_439173_4 PFAM MAPEG family - - - 0.0000000000000000000000000000000005901 145.0
DYD3_k127_439173_5 acetyltransferase - GO:0003674,GO:0003824,GO:0016740,GO:0016746,GO:0016747 - 0.000000000000000000000000001323 129.0
DYD3_k127_4404702_0 Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 567.0
DYD3_k127_4404702_1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 378.0
DYD3_k127_4404702_2 Histidine Phosphotransfer domain - - - 0.00000000001646 69.0
DYD3_k127_44090_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 1.066e-218 681.0
DYD3_k127_44090_1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 - - 0.00000000000000000000000000000000000003545 153.0
DYD3_k127_44090_2 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.0000000000000000000000000000000000002811 149.0
DYD3_k127_44090_3 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000004144 102.0
DYD3_k127_4410956_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 1.946e-199 635.0
DYD3_k127_4410956_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 521.0
DYD3_k127_4410956_2 Diacylglycerol kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 301.0
DYD3_k127_4410956_3 - - - - 0.0000000002084 61.0
DYD3_k127_4420910_0 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 521.0
DYD3_k127_4420910_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 457.0
DYD3_k127_4420910_2 Protein involved in cellulose biosynthesis - - - 0.000000000000000000000000000000000000000005006 171.0
DYD3_k127_4420910_3 Helix-turn-helix domain - - - 0.00000000000000000000000000000006983 134.0
DYD3_k127_4420910_4 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000008876 136.0
DYD3_k127_4420910_5 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000004173 128.0
DYD3_k127_4420910_6 - - - - 0.0000000000000000000006655 106.0
DYD3_k127_4420910_7 Dodecin K09165 - - 0.000000000000000000001069 97.0
DYD3_k127_4420910_8 PAS domain - - - 0.000000000000000000005456 101.0
DYD3_k127_4420910_9 Acetyltransferase (GNAT) domain - - - 0.000000000000001864 89.0
DYD3_k127_4422682_0 PFAM UDP-glucuronosyl UDP-glucosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003475 286.0
DYD3_k127_4422682_1 FMN-dependent dehydrogenase K00101 - 1.1.2.3 0.0000000000000000000000000000000000000000000000000000001645 198.0
DYD3_k127_4422682_2 Polysaccharide biosynthesis protein K17947 - 5.1.3.25 0.0001086 45.0
DYD3_k127_4425045_0 aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 482.0
DYD3_k127_4425045_1 alpha beta K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 387.0
DYD3_k127_4425045_2 Phenazine biosynthesis-like protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000001315 160.0
DYD3_k127_4425045_3 AMP-binding enzyme K12508 - 6.2.1.34 0.000000000000000001544 98.0
DYD3_k127_4433173_0 TIGRFAM lysine 2,3-aminomutase YodO family protein K01843 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 455.0
DYD3_k127_4433173_1 tRNA synthetases class II (D, K and N) K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002036 269.0
DYD3_k127_4433173_2 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000002365 178.0
DYD3_k127_4452497_0 receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003992 550.0
DYD3_k127_4452497_1 beta-hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 350.0
DYD3_k127_4466675_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1138.0
DYD3_k127_4466675_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000001445 220.0
DYD3_k127_4466675_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000008631 111.0
DYD3_k127_4471939_0 Spermidine putrescine-binding periplasmic protein K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 442.0
DYD3_k127_4471939_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 426.0
DYD3_k127_4471939_2 Binding-protein-dependent transport system inner membrane component K02054 - - 0.000000000000000000000000000000000000000000000004553 180.0
DYD3_k127_44966_0 Belongs to the glycosyl hydrolase 31 family K01187 - 3.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 524.0
DYD3_k127_44966_1 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000006906 133.0
DYD3_k127_4499156_0 Heme oxygenase K21480 - 1.14.15.20 0.0000000000000000000000000000000000000001807 160.0
DYD3_k127_4499156_1 - - - - 0.00000000000000000000000007008 110.0
DYD3_k127_4499156_2 - - - - 0.000000000000000466 85.0
DYD3_k127_4518788_0 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 336.0
DYD3_k127_4518788_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000001066 185.0
DYD3_k127_4518788_2 protein conserved in bacteria K09984 - - 0.0000000000000000000000000000000001722 135.0
DYD3_k127_4518788_3 COG1956 GAF domain-containing protein K08968 - 1.8.4.14 0.0000000000000002944 79.0
DYD3_k127_4519729_0 COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases K13049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 528.0
DYD3_k127_4519729_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005084 278.0
DYD3_k127_4519729_2 SnoaL-like domain - - - 0.0000003047 63.0
DYD3_k127_4520352_0 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302 363.0
DYD3_k127_4520352_1 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.000000000000000000000000000001517 122.0
DYD3_k127_4520352_2 - - - - 0.0000000000000000000000000001643 118.0
DYD3_k127_4533223_0 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006174 397.0
DYD3_k127_4533223_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000131 233.0
DYD3_k127_4533223_2 Protein of unknown function (DUF1614) - - - 0.0000000000000000000000000000000000000000000004493 175.0
DYD3_k127_4533223_3 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000008343 124.0
DYD3_k127_4533223_4 - - - - 0.0000000000000000003396 95.0
DYD3_k127_4539326_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 499.0
DYD3_k127_4539326_1 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004504 447.0
DYD3_k127_4539326_2 Ion transport protein K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001922 279.0
DYD3_k127_4539326_3 HpcH/HpaI aldolase/citrate lyase family K02510 - 4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000161 267.0
DYD3_k127_4539326_4 DNA RNA non-specific endonuclease K01173 - - 0.000000000000000000000000000000000000000000000002047 189.0
DYD3_k127_4539326_5 PAS domain - - - 0.0000000000006733 75.0
DYD3_k127_4539326_6 PAS domain - - - 0.00000000104 65.0
DYD3_k127_4539326_7 PFAM Enoyl-CoA hydratase isomerase K01692,K01715 - 4.2.1.17 0.000000009758 59.0
DYD3_k127_4539326_9 APO RNA-binding - - - 0.0004793 45.0
DYD3_k127_4541680_0 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 439.0
DYD3_k127_4541680_1 transcriptional regulator - - - 0.000000000000000000001838 102.0
DYD3_k127_4541680_2 Domain of unknown function (DUF4345) - - - 0.00000000000000009939 84.0
DYD3_k127_4541680_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000001028 79.0
DYD3_k127_4549242_0 L,D-transpeptidase catalytic domain - - - 0.000000000008388 76.0
DYD3_k127_4554165_0 Catalyzes the synthesis of activated sulfate K00955 - 2.7.1.25,2.7.7.4 3.784e-309 973.0
DYD3_k127_4554165_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 7.343e-206 647.0
DYD3_k127_4554165_2 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III - - - 9.858e-199 630.0
DYD3_k127_4554165_3 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 533.0
DYD3_k127_4554165_4 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 373.0
DYD3_k127_4554165_5 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000001954 231.0
DYD3_k127_4554165_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000002495 144.0
DYD3_k127_4554165_7 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000002228 70.0
DYD3_k127_4565763_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 621.0
DYD3_k127_4565763_1 Cell cycle protein K03588,K05837 - - 0.00000000000000000000000000000000000000000002647 166.0
DYD3_k127_4565763_2 Autotransporter beta-domain - - - 0.000006351 53.0
DYD3_k127_4571394_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 523.0
DYD3_k127_4571394_1 Protein of unknown function (DUF3089) - - - 0.000000000000000000000000000000000000000000000000000002468 205.0
DYD3_k127_4575242_0 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000718 443.0
DYD3_k127_4575242_1 FAD dependent oxidoreductase K09471 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 427.0
DYD3_k127_4575242_2 Serine acetyltransferase, N-terminal K00640 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009314,GO:0009333,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 383.0
DYD3_k127_4575242_3 COG0778 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000001424 210.0
DYD3_k127_4575242_4 phosphoglycerate mutase - - - 0.0000000000000000000000000008753 119.0
DYD3_k127_4575242_5 - - - - 0.000001698 59.0
DYD3_k127_4579710_0 TIGRFAM amino acid adenylation domain protein - - - 1.283e-243 775.0
DYD3_k127_4579710_1 transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001062 241.0
DYD3_k127_4579710_2 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000000000000000115 117.0
DYD3_k127_4587688_0 Belongs to the ompA family K03286 - - 0.00000000000000000000000000007277 129.0
DYD3_k127_4587688_1 Belongs to the ompA family K03286 - - 0.0000000000002144 81.0
DYD3_k127_459332_0 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 562.0
DYD3_k127_459332_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006451 542.0
DYD3_k127_459332_2 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase K16171 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004358 454.0
DYD3_k127_459332_3 Maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002204 273.0
DYD3_k127_459332_4 MarR family transcriptional regulator - - - 0.0000000000000000000000000000000000002862 148.0
DYD3_k127_459332_5 Band 7 protein - - - 0.00000000000000000000000009203 115.0
DYD3_k127_459332_6 Phosphate acyltransferases - - - 0.00000000003083 65.0
DYD3_k127_4597514_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 428.0
DYD3_k127_4597514_1 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000854 372.0
DYD3_k127_4597514_2 Putative transmembrane protein (Alph_Pro_TM) - - - 0.000000000000000000000000000000000000000004781 174.0
DYD3_k127_4597514_3 Transcriptional regulator - - - 0.000000000000000000000000000000000002595 143.0
DYD3_k127_4597514_4 Sel1-like repeats. K07126,K13582 - - 0.000000000000000000000000000003874 123.0
DYD3_k127_4600517_0 ABC transporter transmembrane region K02021 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 608.0
DYD3_k127_4622031_0 Belongs to the cytochrome P450 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 555.0
DYD3_k127_4622031_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000007778 218.0
DYD3_k127_4622031_2 beta-lactamase K17836 - 3.5.2.6 0.00002083 47.0
DYD3_k127_462720_0 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 504.0
DYD3_k127_462720_1 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 439.0
DYD3_k127_462720_2 COG4237 Hydrogenase 4 membrane component (E) K12140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007341 340.0
DYD3_k127_462720_3 Proton-conducting membrane transporter - - - 0.00000000000000000000000000000000000000000000000000000003901 200.0
DYD3_k127_4633686_0 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 313.0
DYD3_k127_4633686_1 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001704 273.0
DYD3_k127_4633686_2 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000003655 194.0
DYD3_k127_4653262_0 prohibitin homologues - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 405.0
DYD3_k127_4653262_1 Inositol monophosphatase family K01082 - 3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001805 288.0
DYD3_k127_4653262_2 Protein of unknown function (DUF1134) - - - 0.0000000000000000000000000000000000000000000000000000000000002355 217.0
DYD3_k127_4653262_3 DinB superfamily - - - 0.000000000000000000000000000000000000000000000009077 176.0
DYD3_k127_4653262_4 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000002224 166.0
DYD3_k127_4653262_5 Histidine phosphotransferase C-terminal domain K13588 - - 0.0000000000000000000000000000000008703 135.0
DYD3_k127_4653262_6 Membrane protein implicated in regulation of membrane protease activity K07340 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000006605 106.0
DYD3_k127_4653262_7 Protein of unknown function (DUF3553) - - - 0.0000000002295 64.0
DYD3_k127_4653262_8 glycosyl transferase family 8 - - - 0.0001283 47.0
DYD3_k127_4669239_0 ABC transporter K06158 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000008718 252.0
DYD3_k127_4669239_1 protein conserved in bacteria containing a divergent form of TPR repeats - - - 0.000000000000000000000000000000000000000000000000001027 190.0
DYD3_k127_4669239_2 - - - - 0.000000009909 60.0
DYD3_k127_4679274_0 Domain of unknown function (DUF4010) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001573 271.0
DYD3_k127_4679274_1 Cold shock K03704 - - 0.0000000000000000000000002636 106.0
DYD3_k127_4681581_0 Pilus formation protein N terminal region K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 544.0
DYD3_k127_4681581_1 AAA domain K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004877 320.0
DYD3_k127_4681581_2 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.0000000000000000000000000000000000000000000000000000000007893 211.0
DYD3_k127_4681581_3 Pilus biogenesis CpaD protein (pilus_cpaD) K02281 - - 0.000000000000000000000000000000000000002132 156.0
DYD3_k127_4681581_4 Type IV leader peptidase family K02278 - 3.4.23.43 0.00000000000000000000000000112 119.0
DYD3_k127_4681581_5 Flp/Fap pilin component K02651 - - 0.00000546 48.0
DYD3_k127_4683352_0 TonB dependent receptor K02014 - - 0.0 1049.0
DYD3_k127_4683352_1 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 509.0
DYD3_k127_4683352_2 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004586 420.0
DYD3_k127_4683352_3 Sugar (and other) transporter K08195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 356.0
DYD3_k127_4683352_4 PFAM regulatory protein MarR - - - 0.000000000000000000000000000000000003111 143.0
DYD3_k127_4683352_5 - - - - 0.0002117 51.0
DYD3_k127_4695156_0 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 390.0
DYD3_k127_4695156_1 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000247 378.0
DYD3_k127_4695156_2 COG0861 Membrane protein TerC, possibly involved in tellurium resistance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 351.0
DYD3_k127_4695156_3 Ribosomal L28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000002659 130.0
DYD3_k127_4695156_4 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000001791 122.0
DYD3_k127_4695156_5 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.000000000000000000000000008256 119.0
DYD3_k127_4704844_0 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000007684 194.0
DYD3_k127_4704844_1 Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000006046 161.0
DYD3_k127_4704844_2 AMP-binding enzyme C-terminal domain K16029 - - 0.00000000000000000001688 102.0
DYD3_k127_4714451_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 535.0
DYD3_k127_4714451_1 Glycosyl transferases group 1 K00786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006458 316.0
DYD3_k127_4714451_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000004252 196.0
DYD3_k127_4717488_0 Acyclic terpene utilisation family protein AtuA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 612.0
DYD3_k127_4745453_0 Luciferase-like monooxygenase K14733 - 1.14.13.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 461.0
DYD3_k127_4745453_1 Alcohol dehydrogenase GroES-like domain K00004 - 1.1.1.303,1.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 330.0
DYD3_k127_4745453_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003832 262.0
DYD3_k127_4745453_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000000000000000000000000000004319 136.0
DYD3_k127_4745453_4 Pyridoxamine 5'-phosphate oxidase - - - 0.000000000000001997 78.0
DYD3_k127_4755910_0 Belongs to the amidase family K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009233 467.0
DYD3_k127_4755910_1 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000001493 214.0
DYD3_k127_4762103_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 8.503e-254 803.0
DYD3_k127_4762103_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008796 338.0
DYD3_k127_4762103_2 Phage integrase, N-terminal SAM-like domain K03733 - - 0.000000000000000000001242 98.0
DYD3_k127_4815292_0 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 565.0
DYD3_k127_4815292_1 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000003314 171.0
DYD3_k127_4815292_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000001547 70.0
DYD3_k127_4818791_0 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 372.0
DYD3_k127_4818791_1 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 332.0
DYD3_k127_4818791_2 PFAM NAD-dependent epimerase dehydratase K15856,K22252 - 1.1.1.135,1.1.1.281 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 323.0
DYD3_k127_4818791_3 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003306 307.0
DYD3_k127_4818791_4 - - - - 0.000000000000000000000000000000000000000000000006811 175.0
DYD3_k127_4818791_5 COG0457 FOG TPR repeat - - - 0.000000002298 64.0
DYD3_k127_4820763_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 524.0
DYD3_k127_4820763_1 Mitochondrial fission ELM1 K07276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 297.0
DYD3_k127_4820763_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000005845 233.0
DYD3_k127_4820763_3 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000000000000000000000000000000000000000005814 225.0
DYD3_k127_4852679_0 - - - - 0.00000000000000000004538 95.0
DYD3_k127_4852679_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000644 61.0
DYD3_k127_4852679_2 Cold shock protein K03704 - - 0.000007319 55.0
DYD3_k127_4853432_0 Phospholipid methyltransferase - - - 0.0000000000000000000000000001981 121.0
DYD3_k127_4853432_1 - - - - 0.0000000000000000000000008198 112.0
DYD3_k127_4853432_2 NUDIX domain - - - 0.000686 44.0
DYD3_k127_4856526_0 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 358.0
DYD3_k127_4856526_1 Belongs to the HpcH HpaI aldolase family K08691 - 4.1.3.24,4.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000007075 248.0
DYD3_k127_4856526_2 - - - - 0.0000003612 55.0
DYD3_k127_4860303_0 HupE / UreJ protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002564 284.0
DYD3_k127_4860303_1 - - - - 0.0000004084 53.0
DYD3_k127_4860303_2 - - - - 0.00001242 49.0
DYD3_k127_4866949_0 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006216 454.0
DYD3_k127_4866949_1 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000000000000000000000000001583 185.0
DYD3_k127_4866949_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000166 155.0
DYD3_k127_4866949_3 Calcium/calmodulin dependent protein kinase II association domain - - - 0.000000000000000003284 93.0
DYD3_k127_4866949_4 SnoaL-like domain - - - 0.0003504 44.0
DYD3_k127_4872980_0 Methyltransferase domain - - - 0.00000000000000000000000000000000000000002038 166.0
DYD3_k127_4878892_0 Belongs to the sigma-70 factor family K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004975 340.0
DYD3_k127_4878892_1 helicase superfamily c-terminal domain K17675 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 341.0
DYD3_k127_4878892_2 CarD-like/TRCF domain K07736 - - 0.00000000000000000000000000000000000000000000000000000000000000000009236 244.0
DYD3_k127_4878892_3 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000000004901 210.0
DYD3_k127_4878892_4 Staphylococcal nuclease homologue - - - 0.00000000000000000000000000000000000000000000000000000000001248 215.0
DYD3_k127_4878892_5 S4 domain K04762 - - 0.0000000000000000000000000000000002691 140.0
DYD3_k127_4888400_0 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000005074 194.0
DYD3_k127_4888400_1 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000003498 182.0
DYD3_k127_4888400_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000006283 106.0
DYD3_k127_4902469_0 Electron transfer flavoprotein, beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 395.0
DYD3_k127_4902469_1 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000008382 229.0
DYD3_k127_4902469_2 Electron transfer flavoprotein K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.0000000000000000000000000000000003983 133.0
DYD3_k127_4902469_3 Putative bacterial sensory transduction regulator - - - 0.00004708 49.0
DYD3_k127_4914409_0 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000000000000000000000000000000000000006377 181.0
DYD3_k127_4914409_1 AMP binding - - - 0.00000000000000000000000000000000000000000003161 172.0
DYD3_k127_4914409_2 Membrane dipeptidase (Peptidase family M19) - - - 0.000000000000000000006285 93.0
DYD3_k127_4915843_0 Protein of unknown function (DUF1428) - - - 0.00000000000000000000000000000000000000000000000000004121 189.0
DYD3_k127_4915843_1 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.000000000000000000000000000000003131 133.0
DYD3_k127_4915843_2 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.00000000000000000000000009068 111.0
DYD3_k127_4915843_3 biopolymer transport protein K03559,K03560 - - 0.0000000000000000000004269 101.0
DYD3_k127_4915843_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000219 68.0
DYD3_k127_4915843_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000007342 67.0
DYD3_k127_4921116_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1074.0
DYD3_k127_4921116_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 - 0.0000000000000000000000000000000000000000000000000000000000000177 219.0
DYD3_k127_4921116_2 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000001949 108.0
DYD3_k127_4933193_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 497.0
DYD3_k127_4933193_1 Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - 0.00000000000000000000000000000000000000000000000000000000006688 219.0
DYD3_k127_4933193_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000000000000000000000003237 171.0
DYD3_k127_4934949_0 pyruvate-flavodoxin oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000004084 240.0
DYD3_k127_4934949_1 methylmalonyl-CoA epimerase K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000000000000000000000004382 228.0
DYD3_k127_4934949_2 Protein of unknown function (DUF1467) - - - 0.0000000000000009243 79.0
DYD3_k127_4934949_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00249 - 1.3.8.7 0.0003927 49.0
DYD3_k127_4952668_0 Saccharopine dehydrogenase NADP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004234 373.0
DYD3_k127_4952668_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000008235 239.0
DYD3_k127_4952668_2 [2Fe-2S] binding domain - - - 0.00000000000000000000000000000000000000000000000000000001411 211.0
DYD3_k127_4952668_3 Tetratricopeptide repeat - - - 0.000000000000000000000001433 112.0
DYD3_k127_4952668_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000007324 106.0
DYD3_k127_4960187_0 - - - - 0.0000000000000000000000000000000000000000000000006629 181.0
DYD3_k127_4960187_1 exopolysaccharide synthesis - - - 0.0000000000000000000000000000000000000008705 157.0
DYD3_k127_4960187_2 PFAM acyl-CoA dehydrogenase K14448 - 1.3.8.12 0.0000000000000000000000000002346 119.0
DYD3_k127_4960187_3 Acetyltransferase (GNAT) family - - - 0.000000000000009863 81.0
DYD3_k127_4965451_0 Elongation factor G, domain IV K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006344 437.0
DYD3_k127_4965451_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009578 283.0
DYD3_k127_4965451_2 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000006697 245.0
DYD3_k127_4965451_3 COG1956 GAF domain-containing protein K08968 - 1.8.4.14 0.00000000000000000000000000000000000000000000000000000000000000006376 226.0
DYD3_k127_4967053_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 560.0
DYD3_k127_4967053_1 NADH-quinone oxidoreductase chain K00342 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000004175 216.0
DYD3_k127_4982842_0 cystathionine K01758 - 4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 459.0
DYD3_k127_4982842_1 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 306.0
DYD3_k127_4982842_2 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003838 293.0
DYD3_k127_4982842_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007993 287.0
DYD3_k127_4982842_4 DnaJ C terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002176 271.0
DYD3_k127_4982842_5 Sel1 domain protein repeat-containing protein - - - 0.000000000000000000000000000008413 132.0
DYD3_k127_4982842_6 beta-lactamase activity K07126,K19292 - - 0.0000002923 62.0
DYD3_k127_4985546_0 Glutathione S-transferase, C-terminal domain K00799,K03599 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 344.0
DYD3_k127_4985546_1 Glutathione S-transferase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000125 192.0
DYD3_k127_4985546_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000007378 178.0
DYD3_k127_4985546_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000002633 97.0
DYD3_k127_500072_0 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 - 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 524.0
DYD3_k127_500072_1 Belongs to the HesB IscA family K15724 - - 0.000000000000000000000000000000000006351 139.0
DYD3_k127_500072_2 Cupin domain - - - 0.000000000000000000000008215 101.0
DYD3_k127_504031_0 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 334.0
DYD3_k127_504031_1 Nucleotidyl transferase K00966,K00992 - 2.7.7.13,2.7.7.99 0.0000000000000000000000000000000000000005112 152.0
DYD3_k127_504031_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000001402 153.0
DYD3_k127_5041828_0 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 301.0
DYD3_k127_5041828_1 Predicted membrane protein (DUF2157) - - - 0.00000000000000000000000000000000000000000000000000001072 204.0
DYD3_k127_5041828_2 PFAM acyl-CoA dehydrogenase domain protein - - - 0.00000000000000000000000000000000000000000000000001572 184.0
DYD3_k127_5041828_3 GDYXXLXY protein - - - 0.00000000000000000000000000000000000000000000002058 177.0
DYD3_k127_5041828_4 membrane protein (homolog of Drosophila rhomboid) - - - 0.0000000000000000000000000000000000000004977 160.0
DYD3_k127_5070723_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 6.423e-202 638.0
DYD3_k127_5070723_1 Protein of unknown function (DUF1036) - - - 0.0000000000000000000000000000006863 127.0
DYD3_k127_5070723_2 pfam mofrl K11529 - 2.7.1.165 0.00000000000000000000000000003961 118.0
DYD3_k127_5070723_3 Tetratricopeptide repeat - - - 0.00000009362 55.0
DYD3_k127_5075370_0 Enoyl-CoA hydratase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 385.0
DYD3_k127_5075370_1 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 341.0
DYD3_k127_5075370_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000003138 239.0
DYD3_k127_5075370_3 - - - - 0.0000000001453 70.0
DYD3_k127_5079298_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 492.0
DYD3_k127_5079298_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 303.0
DYD3_k127_5079298_2 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000001197 233.0
DYD3_k127_5079298_3 transcriptional regulator, araC family - - - 0.000000000000000000007458 102.0
DYD3_k127_5091251_0 Transcriptional regulatory protein, C terminal K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 371.0
DYD3_k127_5091251_1 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 329.0
DYD3_k127_5091251_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003846 234.0
DYD3_k127_5091251_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000003633 89.0
DYD3_k127_5091251_4 MacB-like periplasmic core domain - - - 0.00000000364 68.0
DYD3_k127_5091251_5 peptidase - - - 0.000000303 57.0
DYD3_k127_5091251_6 Transcriptional regulator PadR-like family - - - 0.00001155 48.0
DYD3_k127_5097297_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 414.0
DYD3_k127_5097297_1 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002764 256.0
DYD3_k127_5097297_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000006855 123.0
DYD3_k127_5097297_3 - - - - 0.000000000000000001897 92.0
DYD3_k127_5097297_4 transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.0000001715 53.0
DYD3_k127_5099766_0 Transcriptional regulatory protein, C terminal K02483 GO:0000160,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0006355,GO:0007154,GO:0007165,GO:0008150,GO:0009889,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031326,GO:0035556,GO:0042221,GO:0042802,GO:0046688,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006607 351.0
DYD3_k127_5099766_1 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000001594 224.0
DYD3_k127_5129573_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000002061 192.0
DYD3_k127_5129573_1 Platelet-activating factor acetylhydrolase, isoform II - - - 0.00000000000000000000000000000000000000004557 161.0
DYD3_k127_5129573_2 PFAM tRNA rRNA methyltransferase (SpoU) - - - 0.00000000000001797 77.0
DYD3_k127_5129573_3 Transcriptional regulator, LuxR family K07782 - - 0.00000000001112 76.0
DYD3_k127_5129573_4 Beta/gamma crystallins - - - 0.000000006017 69.0
DYD3_k127_5131408_0 EamA-like transporter family K05786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006435 254.0
DYD3_k127_5131408_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000002205 245.0
DYD3_k127_5131408_2 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000008857 203.0
DYD3_k127_5131408_3 Cytochrome C' - - - 0.00000000000614 72.0
DYD3_k127_5132515_0 Adenylosuccinate lyase C-terminus K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 398.0
DYD3_k127_5132515_1 Peptidase M50 - - - 0.000000000000000000000000000006043 127.0
DYD3_k127_5135280_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 445.0
DYD3_k127_5135280_1 type I phosphodiesterase nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001708 278.0
DYD3_k127_5135280_2 COG3307 Lipid A core - O-antigen ligase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004496 282.0
DYD3_k127_5135280_3 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004394 266.0
DYD3_k127_5135280_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001476 235.0
DYD3_k127_5135280_5 UDP binding domain - - - 0.00000000000000001151 83.0
DYD3_k127_5138439_0 Predicted permease YjgP/YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 393.0
DYD3_k127_5138439_1 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001935 290.0
DYD3_k127_5138439_2 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.00000000000000000000000000000000000000000000000000000000000005247 226.0
DYD3_k127_5138439_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000006122 203.0
DYD3_k127_5149093_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000357 160.0
DYD3_k127_5149093_1 CsbD-like - - - 0.00000000000000000000000197 106.0
DYD3_k127_5149093_2 Protein of unknown function (DUF3309) - - - 0.0000000000000001727 79.0
DYD3_k127_5149093_3 Outer membrane protein beta-barrel domain - - - 0.00000000003332 68.0
DYD3_k127_5154744_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 405.0
DYD3_k127_5154744_1 Protein of unknown function (DUF429) - - - 0.0000000000000000000000000000000000000000001157 171.0
DYD3_k127_5154744_2 Regulator of CtrA degradation K13592 - - 0.000000001181 61.0
DYD3_k127_5154744_3 Protein of unknown function (DUF1192) - - - 0.000000005181 59.0
DYD3_k127_5154744_4 protein conserved in bacteria K09987 - - 0.000004785 48.0
DYD3_k127_5162653_0 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 532.0
DYD3_k127_5162653_1 XdhC Rossmann domain K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002466 260.0
DYD3_k127_5162653_2 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000003367 210.0
DYD3_k127_5162653_3 XdhC and CoxI family - - - 0.0000000000000000000000000000000000005693 145.0
DYD3_k127_5162653_4 NifU-like N terminal domain - - - 0.0000000000000000000000008172 109.0
DYD3_k127_5162653_5 VWA domain containing CoxE-like protein K07161 - - 0.0000000000000007925 78.0
DYD3_k127_5162653_6 Alpha-amylase domain K01187 - 3.2.1.20 0.00002869 48.0
DYD3_k127_5162983_0 Plays a role in the flagellum-specific transport system K02419 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009972 310.0
DYD3_k127_5162983_1 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000000000000000000000000000000000000000005719 181.0
DYD3_k127_5162983_2 TIGRFAM pseudaminic acid biosynthesis-associated protein PseG - - - 0.00000000000000000000000000000001423 134.0
DYD3_k127_5162983_3 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.000000000000000000000000002514 117.0
DYD3_k127_5162983_4 Flagellar hook-basal body complex protein FliE K02408 - - 0.000000000000000005032 87.0
DYD3_k127_5162983_5 Flagellar biosynthesis protein, FliO K02418 - - 0.00000000000001122 78.0
DYD3_k127_5162983_6 Flagellar biosynthetic protein FliQ K02420 - - 0.0000002778 52.0
DYD3_k127_5173929_0 Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol K01738,K01740 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47,2.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 302.0
DYD3_k127_5173929_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007568 260.0
DYD3_k127_5173929_2 COG2873 O-acetylhomoserine sulfhydrylase K01738,K01740 - 2.5.1.47,2.5.1.49 0.000000000000000000000000000000000000000000000000000000000002496 217.0
DYD3_k127_5175979_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 511.0
DYD3_k127_5175979_1 His Kinase A (phosphoacceptor) domain K15011 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005213 281.0
DYD3_k127_5175979_2 COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K15012 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002318 265.0
DYD3_k127_5175979_3 DNA repair protein MmcB-like - - - 0.0000000000000000000000000000000000000005671 153.0
DYD3_k127_5180940_0 His Kinase A (phosphoacceptor) domain K07716,K11357 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 324.0
DYD3_k127_5180940_1 response to cobalt ion - - - 0.000000000000000000000000158 108.0
DYD3_k127_5187136_0 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000108 209.0
DYD3_k127_5187136_1 COG3040 Bacterial lipocalin K03098 - - 0.00000000000000000000000000000000000000000000000000003735 192.0
DYD3_k127_5187136_2 Aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000002366 159.0
DYD3_k127_5197_0 M61 glycyl aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 360.0
DYD3_k127_5197_1 Alpha/beta hydrolase family K18092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008636 286.0
DYD3_k127_5197_2 And related - - - 0.000000000000000000000000000000000000000000000000000004137 197.0
DYD3_k127_5197_3 small membrane protein - - - 0.00000007512 55.0
DYD3_k127_5197951_0 Acyl transferase domain in polyketide synthase (PKS) enzymes. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 322.0
DYD3_k127_5197951_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000001067 168.0
DYD3_k127_5197951_2 Response regulator, receiver - - - 0.00000000000000000000001827 104.0
DYD3_k127_5197951_3 PAS domain containing protein K07315,K07675 - 2.7.13.3,3.1.3.3 0.00000000000001439 89.0
DYD3_k127_5197951_4 Recombinase zinc beta ribbon domain - - - 0.00000001823 63.0
DYD3_k127_5205005_0 Phosphoenolpyruvate phosphomutase K03417 - 4.1.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006598 327.0
DYD3_k127_5205005_1 aminotransferase class I and II K00375 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 315.0
DYD3_k127_5205005_2 - - - - 0.00000000000000000000005336 100.0
DYD3_k127_5224613_0 NADH:flavin oxidoreductase / NADH oxidase family K00317 - 1.5.8.1,1.5.8.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 563.0
DYD3_k127_5224613_1 His Kinase A (phosphoacceptor) domain K07716 - 2.7.13.3 0.000000000000000000000000000000000008876 150.0
DYD3_k127_5225820_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 538.0
DYD3_k127_5225820_1 DJ-1/PfpI family K18199 - 4.2.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008432 300.0
DYD3_k127_5225820_2 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000008314 229.0
DYD3_k127_5226673_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.0000000000000000000000005965 104.0
DYD3_k127_5228460_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.179 6.24e-203 638.0
DYD3_k127_5228460_1 malonyl CoA-acyl carrier protein transacylase K00645,K15327 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002616 393.0
DYD3_k127_5228460_2 short-chain dehydrogenase reductase SDR K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 375.0
DYD3_k127_5228460_3 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005269 368.0
DYD3_k127_5228460_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005613 368.0
DYD3_k127_5228460_5 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 342.0
DYD3_k127_5228460_6 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 295.0
DYD3_k127_5228460_7 SurA N-terminal domain K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007821 284.0
DYD3_k127_5228460_8 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000002705 269.0
DYD3_k127_5228460_9 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000000000006358 131.0
DYD3_k127_5235661_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 329.0
DYD3_k127_5235661_1 YHS domain protein - - - 0.000000000000000000000000000000000000000002089 160.0
DYD3_k127_5235661_2 MarR family - - - 0.0000000000000000000000000000000000001988 146.0
DYD3_k127_5235661_3 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000002291 138.0
DYD3_k127_5235661_4 Rhodanese Homology Domain - - - 0.0000000000000000000000003724 114.0
DYD3_k127_5243298_0 peptidase, M13 K01415,K07386 - 3.4.24.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 579.0
DYD3_k127_5254217_0 Transposase and inactivated derivatives K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 485.0
DYD3_k127_5254217_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 310.0
DYD3_k127_5254217_2 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000147 259.0
DYD3_k127_5254217_3 ligase activity - - - 0.000000000000000000000000002072 125.0
DYD3_k127_5254217_4 MMPL family - - - 0.000002807 51.0
DYD3_k127_5265831_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003737 409.0
DYD3_k127_5265831_1 protein conserved in bacteria K09798 - - 0.000000000008122 72.0
DYD3_k127_5270694_0 Peptidase family M13 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001577 287.0
DYD3_k127_5270694_1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K03772,K03773 - 5.2.1.8 0.00000000000000000000000000000000000000000002951 169.0
DYD3_k127_5270694_2 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.00000000000000000000000000000002154 128.0
DYD3_k127_5281675_0 - - - - 0.00000000000000000000000000000000000000000000008442 171.0
DYD3_k127_5281675_1 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000233 165.0
DYD3_k127_5281675_2 phosphorelay signal transduction system K02535 - 3.5.1.108 0.0000000000000000000005034 102.0
DYD3_k127_5281675_3 UPF0056 membrane protein K05595 - - 0.0005809 42.0
DYD3_k127_5306375_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 392.0
DYD3_k127_5306375_1 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 365.0
DYD3_k127_5308167_0 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 399.0
DYD3_k127_5308167_1 RDD family - - - 0.0000000001528 64.0
DYD3_k127_5313928_0 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 580.0
DYD3_k127_5313928_1 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000000001279 192.0
DYD3_k127_5313928_2 Thioesterase-like superfamily - - - 0.0000000000000000000000000000000000000000000025 168.0
DYD3_k127_5344652_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009576 342.0
DYD3_k127_5344652_1 - - - - 0.00006357 53.0
DYD3_k127_5357175_0 Sigma-70 region 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001318 245.0
DYD3_k127_5357175_1 Phosphomethylpyrimidine kinase K00868 - 2.7.1.35 0.000000000000000000000000000000000000000000000000000006455 210.0
DYD3_k127_5357175_2 - - - - 0.000000000000000000000000005583 119.0
DYD3_k127_5362975_0 Berberine and berberine like - - - 1.17e-202 640.0
DYD3_k127_5362975_1 - - - - 0.0000000000000000000000000000000000000000000000001901 178.0
DYD3_k127_5362975_2 - - - - 0.000000000000000000000000000000000007574 140.0
DYD3_k127_5382062_0 metal-dependent hydrolase of the TIM-barrel fold K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 440.0
DYD3_k127_5382062_1 HxlR-like helix-turn-helix - - - 0.00000000000000000000000000000000001743 136.0
DYD3_k127_5382062_2 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000003201 133.0
DYD3_k127_5382062_3 Domain of unknown function (DUF1330) - - - 0.0001117 54.0
DYD3_k127_5388951_0 Acyl-CoA dehydrogenase type 2 domain K00249 - 1.3.8.7 3.929e-202 640.0
DYD3_k127_5388951_1 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 501.0
DYD3_k127_5388951_2 PFAM aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 424.0
DYD3_k127_5388951_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 432.0
DYD3_k127_5388951_4 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003234 436.0
DYD3_k127_5388951_5 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K01487,K11991 - 3.5.4.1,3.5.4.3,3.5.4.33 0.00000000000000000000000000000000000000000000000000002456 192.0
DYD3_k127_5388951_6 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000007922 188.0
DYD3_k127_5388951_7 PFAM aminoglycoside phosphotransferase - - - 0.000000000000000000000000000000000042 136.0
DYD3_k127_5388951_8 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000005392 98.0
DYD3_k127_5388951_9 Protein of unknown function (DUF1778) - - - 0.000000000000000001915 93.0
DYD3_k127_5391249_0 COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009042 458.0
DYD3_k127_5391249_1 short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 347.0
DYD3_k127_5391249_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001401 291.0
DYD3_k127_5391249_3 Lysine-2,3-aminomutase K01843 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000009732 269.0
DYD3_k127_5432833_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 602.0
DYD3_k127_5432833_1 Protein of unknown function (DUF815) K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005091 379.0
DYD3_k127_5432833_10 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 GO:0003674,GO:0005215 - 0.0000000000000000001575 92.0
DYD3_k127_5432833_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 364.0
DYD3_k127_5432833_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006778 318.0
DYD3_k127_5432833_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002683 289.0
DYD3_k127_5432833_5 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000009923 247.0
DYD3_k127_5432833_6 Lysin motif K06194 - - 0.000000000000000000000000000000000000000000000000000000000000000002747 239.0
DYD3_k127_5432833_7 Preprotein translocase subunit K03210 - - 0.000000000000000000000000000000003507 132.0
DYD3_k127_5432833_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000008775 125.0
DYD3_k127_5432833_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00000000000000000007758 90.0
DYD3_k127_5433425_0 Patatin-like phospholipase K07001 GO:0003674,GO:0003824,GO:0016787 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 322.0
DYD3_k127_5433425_1 PFAM CBS domain containing protein - - - 0.000000000000000000000000000000000000003053 151.0
DYD3_k127_5435874_0 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 379.0
DYD3_k127_5435874_1 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008074 321.0
DYD3_k127_5435874_2 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003584 280.0
DYD3_k127_5435874_3 Rhomboid family - - - 0.000000000000000000000000000000000000000000008476 169.0
DYD3_k127_543986_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 554.0
DYD3_k127_543986_1 PFAM MotA TolQ ExbB proton channel family K03562 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006089 267.0
DYD3_k127_543986_2 COG3047 Outer membrane protein W K07275 - - 0.0000000000000000000000000000000000000000000000000000000000000002336 228.0
DYD3_k127_543986_3 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000001147 185.0
DYD3_k127_543986_4 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.00000000000000000000000000000000000000000000000003655 182.0
DYD3_k127_543986_5 Cell division and transport-associated protein TolA K03646 - - 0.00000000000000000000000000000000002321 146.0
DYD3_k127_5442190_0 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009081 526.0
DYD3_k127_5442190_1 Acetyltransferase (GNAT) domain K22479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000066 291.0
DYD3_k127_5447117_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 359.0
DYD3_k127_5447117_1 PFAM membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001463 287.0
DYD3_k127_5462275_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009978 283.0
DYD3_k127_5462275_1 PFAM TonB-dependent Receptor K02014 - - 0.0000000000000000000000000000000000000000001513 169.0
DYD3_k127_5462870_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000404 537.0
DYD3_k127_5485472_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000122 183.0
DYD3_k127_5485472_1 - - - - 0.0000000000000000001878 93.0
DYD3_k127_5485472_2 Protein of unknown function (DUF1190) - - - 0.0002068 51.0
DYD3_k127_5503178_0 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 608.0
DYD3_k127_5503178_1 ABC transporter permease K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 349.0
DYD3_k127_5503178_2 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008909 331.0
DYD3_k127_5503178_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 306.0
DYD3_k127_5503178_4 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000001363 168.0
DYD3_k127_5503178_5 Protein of unknown function (DUF1223) - - - 0.0000000000000000000000000009526 118.0
DYD3_k127_5503178_6 PGAP1-like protein - - - 0.0000000000000000000001949 100.0
DYD3_k127_5507077_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.045e-222 700.0
DYD3_k127_5507077_1 PFAM ABC transporter related K01990,K16907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 333.0
DYD3_k127_5507077_2 transmembrane transport K16906 - - 0.00000000000000000000243 103.0
DYD3_k127_5507077_3 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000004769 93.0
DYD3_k127_5507077_4 - K16905,K16906 - - 0.000000000000000004605 89.0
DYD3_k127_5519185_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 316.0
DYD3_k127_5519185_1 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002581 245.0
DYD3_k127_5519185_2 PFAM Glucose Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000002308 222.0
DYD3_k127_5519185_3 N-terminal domain of oxidoreductase K00344 - 1.6.5.5 0.000000000000000000000000000006658 121.0
DYD3_k127_5526863_0 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000002442 185.0
DYD3_k127_5526863_1 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.00000000000000000000000000000539 119.0
DYD3_k127_5526863_2 - - - - 0.00000002384 66.0
DYD3_k127_5543488_0 Acyl transferase domain in polyketide synthase (PKS) enzymes. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003464 618.0
DYD3_k127_5544532_0 AMP-binding enzyme C-terminal domain K02364 - 6.3.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 534.0
DYD3_k127_5544532_1 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000007298 179.0
DYD3_k127_5547591_0 Cellulase (glycosyl hydrolase family 5) - - - 3.244e-270 852.0
DYD3_k127_5547591_1 PcfJ-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 316.0
DYD3_k127_5547591_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP - - - 0.00000000000000000000000002335 112.0
DYD3_k127_5547591_3 - - - - 0.0000000000000004167 84.0
DYD3_k127_5555592_0 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009786 391.0
DYD3_k127_5555592_1 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000004559 201.0
DYD3_k127_5555592_2 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000001177 140.0
DYD3_k127_5560175_0 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 366.0
DYD3_k127_5560175_1 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.00000000000000000000000000000000000000000000000000000000199 204.0
DYD3_k127_5560175_2 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000003846 153.0
DYD3_k127_5569266_0 PFAM short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008259 426.0
DYD3_k127_5569266_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000005618 214.0
DYD3_k127_5569266_2 COG0262 Dihydrofolate reductase - - - 0.00000000000000000000000000006226 120.0
DYD3_k127_5583080_0 AAA ATPase K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008203 452.0
DYD3_k127_5583080_1 - - - - 0.000000000000000000000000000000000000000000004405 185.0
DYD3_k127_5583080_2 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000001327 166.0
DYD3_k127_5583080_3 - - - - 0.000000000000000000000000000000000000001387 154.0
DYD3_k127_5584305_0 COG1138 Cytochrome c biogenesis factor K02198 - - 6.972e-227 716.0
DYD3_k127_5584305_1 Alkyl hydroperoxide reductase - - - 0.0000000000000000000000000000000000000000000000000001223 190.0
DYD3_k127_5584305_2 COG4235 Cytochrome c biogenesis factor K02200 - - 0.0000000000000000000000000000000000000000000006356 176.0
DYD3_k127_5584305_3 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000002684 163.0
DYD3_k127_5593357_0 GH3 auxin-responsive promoter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 532.0
DYD3_k127_5593357_1 belongs to the carbohydrate kinase PfkB family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 441.0
DYD3_k127_5593357_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007609 332.0
DYD3_k127_5593357_3 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 K18586 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001953 285.0
DYD3_k127_5594265_0 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 373.0
DYD3_k127_5594265_1 oxidoreductases (related to aryl-alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000007807 153.0
DYD3_k127_5594265_2 Thioesterase superfamily - - - 0.0000000000000000000000000000000001884 138.0
DYD3_k127_5594265_3 PFAM thioesterase superfamily - - - 0.000000000000000000000001299 108.0
DYD3_k127_5604129_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 465.0
DYD3_k127_5604129_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 394.0
DYD3_k127_5604129_2 Uncharacterized protein conserved in bacteria (DUF2200) - - - 0.000000000000000000000000000000000000000000000000000000001814 201.0
DYD3_k127_5604129_3 Alpha/beta hydrolase of unknown function (DUF1100) - - - 0.000000000000000000000000000000003556 133.0
DYD3_k127_5604129_4 transcriptional regulator - - - 0.00000000000000000000000007843 114.0
DYD3_k127_5604693_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 2.74e-217 678.0
DYD3_k127_5604693_1 histidine ammonia-lyase activity K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 303.0
DYD3_k127_5605486_0 Subtilase family - - - 7.297e-290 917.0
DYD3_k127_5605486_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 507.0
DYD3_k127_560970_0 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005154 497.0
DYD3_k127_560970_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000001965 134.0
DYD3_k127_560970_2 ribonuclease activity - - - 0.000000001222 59.0
DYD3_k127_5620709_0 Aminotransferase class I and II K14261 GO:0003674,GO:0003824,GO:0004021,GO:0006082,GO:0006090,GO:0006520,GO:0006522,GO:0006523,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009078,GO:0009079,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019272,GO:0019752,GO:0030632,GO:0032787,GO:0042851,GO:0042852,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046144,GO:0046145,GO:0046394,GO:0046416,GO:0046436,GO:0046437,GO:0047635,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 1.681e-197 622.0
DYD3_k127_5620709_1 DHH family K07462 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 4.594e-197 631.0
DYD3_k127_5620709_2 homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 492.0
DYD3_k127_5620709_3 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446,K11532 - 3.1.3.11,3.1.3.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 438.0
DYD3_k127_5620709_4 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 312.0
DYD3_k127_5620709_5 PFAM Phosphate-selective porin O and P K07221 - - 0.00000000000000000000000000000000000000000000000000002448 197.0
DYD3_k127_5620709_6 OmpA family - - - 0.0006326 49.0
DYD3_k127_5620795_0 Belongs to the amidase family K01426 - 3.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 456.0
DYD3_k127_5620795_1 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.000000000000000000000000000000000000000000003773 165.0
DYD3_k127_5620795_2 - - - - 0.00000000000000000000000000001003 121.0
DYD3_k127_5625756_0 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003149 249.0
DYD3_k127_5625756_1 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000365 219.0
DYD3_k127_5645433_0 pyruvate-flavodoxin oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009928 264.0
DYD3_k127_5645433_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000657 197.0
DYD3_k127_5645433_2 carboxylic ester hydrolase activity - - - 0.000000000000000000000000000000000000000005307 164.0
DYD3_k127_5666230_0 peptidase S9A prolyl oligopeptidase domain protein beta-propeller K01322 - 3.4.21.26 9.445e-254 797.0
DYD3_k127_5688067_0 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000004555 273.0
DYD3_k127_5688067_1 Putative esterase K07017 - - 0.000000000000000000000000000000000000000000000000000000001343 214.0
DYD3_k127_5689125_0 Glycerol-3-phosphate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 457.0
DYD3_k127_5689125_1 Belongs to the GPAT DAPAT family K00631 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.3.1.15 0.0000000000000000000000000000000000000000000000001433 195.0
DYD3_k127_5691522_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 3.124e-211 666.0
DYD3_k127_5691522_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 437.0
DYD3_k127_5691522_2 Colicin V production protein K03558 - - 0.00000000000000000000000000000001055 143.0
DYD3_k127_5723259_0 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 441.0
DYD3_k127_5723259_1 taurine catabolism dioxygenase K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005489 375.0
DYD3_k127_5723259_2 Epoxide hydrolase N terminus K01253 - 3.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000004025 233.0
DYD3_k127_5723259_3 PAS domain - - - 0.000000006457 64.0
DYD3_k127_5723588_0 III protein, CoA-transferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 488.0
DYD3_k127_5723588_1 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 397.0
DYD3_k127_5723588_2 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000006552 194.0
DYD3_k127_5727679_0 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 430.0
DYD3_k127_5727679_1 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000000000000000001024 224.0
DYD3_k127_5727679_2 - - - - 0.00000000000000000000000000000006676 132.0
DYD3_k127_5735551_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 378.0
DYD3_k127_5735551_1 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000003568 200.0
DYD3_k127_5735551_2 - - - - 0.0000000000000000001688 93.0
DYD3_k127_5735551_3 - - - - 0.00001374 56.0
DYD3_k127_5743399_0 pyruvate-flavodoxin oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000003358 223.0
DYD3_k127_5743399_1 Polysaccharide deacetylase K22278 - 3.5.1.104 0.000000000000000000000000000000000000000000000000000006237 204.0
DYD3_k127_5743399_2 metalloprotease K07054 - - 0.000000000000000000000000000000000000000000002007 169.0
DYD3_k127_5761699_0 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007327 417.0
DYD3_k127_5761699_1 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000003228 241.0
DYD3_k127_5761699_3 Protein of unknown function (DUF423) - - - 0.00000000000000000189 89.0
DYD3_k127_5769509_0 Glycosyl transferase group 2 family protein K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006188 280.0
DYD3_k127_5769509_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000009108 190.0
DYD3_k127_5769509_2 Lipid A Biosynthesis N-terminal domain - - - 0.000000000000000000000000000000001797 132.0
DYD3_k127_5771280_0 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003642 570.0
DYD3_k127_5771280_1 PFAM aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000001608 143.0
DYD3_k127_5771280_2 Transcriptional regulator - - - 0.000000000000000000000001372 111.0
DYD3_k127_5771280_3 - - - - 0.0000000000000002745 87.0
DYD3_k127_5781334_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K01897 - 6.2.1.3 1.902e-220 690.0
DYD3_k127_5781334_1 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000000000000000009785 196.0
DYD3_k127_5788158_0 Oxygenase, catalysing oxidative methylation of damaged DNA K09990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 301.0
DYD3_k127_5788158_1 Protein of unknown function (DUF1203) - - - 0.000000000000000000000000000000000000000000006191 170.0
DYD3_k127_5788158_2 - - - - 0.000000000000000000000000000003777 130.0
DYD3_k127_5788158_3 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0007342 50.0
DYD3_k127_5800834_0 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 7.579e-209 655.0
DYD3_k127_5800834_1 Phosphoadenosine phosphosulfate reductase family K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 317.0
DYD3_k127_5800834_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 302.0
DYD3_k127_5800834_3 Kelch repeat protein - - - 0.0000000000000000000000000000000000000000000000000003746 194.0
DYD3_k127_5800834_4 PRC-barrel domain - - - 0.00000000000000000000000000000000000000000000001728 178.0
DYD3_k127_5800834_5 Sirohaem biosynthesis protein central - - - 0.00000000000000000000000000000000000006025 149.0
DYD3_k127_5800834_6 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.00000000000000000000004374 102.0
DYD3_k127_5800834_7 Bacterial protein of unknown function (DUF883) - - - 0.0000000611 63.0
DYD3_k127_5801895_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family - - - 0.00000000000000000000000000000000000002535 152.0
DYD3_k127_5801895_1 Protein of unknown function (DUF992) - - - 0.000000000000000000000000000000003291 134.0
DYD3_k127_5806204_0 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003086 475.0
DYD3_k127_5806204_1 Binding-protein-dependent transport system inner membrane component K09971 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 415.0
DYD3_k127_5806204_2 ABC transporter K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 378.0
DYD3_k127_5806204_3 amino acid ABC transporter K09970 - - 0.000000000000000000000000000000000005417 137.0
DYD3_k127_5806204_4 Cytochrome c - - - 0.000000000000000000000000000000006637 142.0
DYD3_k127_5806204_5 Universal stress protein family - - - 0.0000000000000000000000000000003251 134.0
DYD3_k127_5806204_6 response to hydrogen peroxide - - - 0.0005459 48.0
DYD3_k127_5808124_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K15778 - 5.4.2.2,5.4.2.8 3.213e-239 748.0
DYD3_k127_5808124_1 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 296.0
DYD3_k127_5808124_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.000000000000000000000000000000000000000000000001347 177.0
DYD3_k127_5808124_3 Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP) K05774 - 2.7.4.23 0.00000000000000000000000000000000000000001669 158.0
DYD3_k127_5814771_0 repressor - - - 0.00000000000000000000000000000000000000000003602 169.0
DYD3_k127_5814771_1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000002458 59.0
DYD3_k127_5823104_0 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000008162 180.0
DYD3_k127_5823104_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.000000000000000000000000000000000000000000003137 168.0
DYD3_k127_5823104_3 Protein of unknown function (FYDLN_acid) - - - 0.00000000001086 74.0
DYD3_k127_5828280_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006057 491.0
DYD3_k127_5828280_1 FES K03575 GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 419.0
DYD3_k127_5828280_2 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 0.00000000000000000000000000000000000000000006813 161.0
DYD3_k127_5828280_3 Thioredoxin - - - 0.000000000000000000000000000000000000003047 159.0
DYD3_k127_5828280_4 Protein of unknown function (DUF721) - - - 0.0000000000000000009299 94.0
DYD3_k127_5853877_0 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000001374 205.0
DYD3_k127_5853877_1 Belongs to the ompA family - - - 0.000000000000514 78.0
DYD3_k127_5853877_2 COG0457 FOG TPR repeat - - - 0.00000192 61.0
DYD3_k127_5871524_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 1.126e-208 659.0
DYD3_k127_5871524_1 FAD binding domain K11472 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 298.0
DYD3_k127_5871524_2 Cysteine-rich domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000176 242.0
DYD3_k127_5871524_3 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000000001817 79.0
DYD3_k127_5871524_4 Lytic murein transglycosylase K08305 - - 0.0000000000000001869 85.0
DYD3_k127_5872248_0 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 389.0
DYD3_k127_5872248_1 - - - - 0.0000000000000000000000000000000000000000000000006929 185.0
DYD3_k127_5872248_2 Tetratricopeptide repeat - - - 0.0000000000009018 70.0
DYD3_k127_5872287_0 FAD-linked oxidoreductase K00594 - 1.1.3.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005671 469.0
DYD3_k127_5872287_1 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 413.0
DYD3_k127_5872287_2 Heme peroxidase family protein,putative calcium-binding protein K19511 - 1.11.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 391.0
DYD3_k127_5872287_3 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 328.0
DYD3_k127_5872287_4 Carboxyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001966 258.0
DYD3_k127_5872287_5 ETC complex I subunit - - - 0.000000000000000000000000000000000000001377 150.0
DYD3_k127_5872287_6 Alpha/beta hydrolase of unknown function (DUF1100) - - - 0.000000000000000000000000000000000008768 142.0
DYD3_k127_5872287_7 - - - - 0.0000000000000000000000000000002026 133.0
DYD3_k127_5872287_8 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000383 129.0
DYD3_k127_5872287_9 Biotin-requiring enzyme - - - 0.00000000000001131 84.0
DYD3_k127_5875639_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 456.0
DYD3_k127_5875639_1 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000000000000000000000000000002837 231.0
DYD3_k127_5875639_2 PFAM acyl-CoA dehydrogenase domain protein K00249 - 1.3.8.7 0.000000000000000000001936 100.0
DYD3_k127_5875639_3 PFAM TonB-dependent Receptor - - - 0.0009065 44.0
DYD3_k127_5876371_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 416.0
DYD3_k127_5876371_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 354.0
DYD3_k127_5876371_2 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003217 271.0
DYD3_k127_5876371_3 citrate synthase K01647 - 2.3.3.1 0.00000000000000000000000000000000000000003833 156.0
DYD3_k127_5876371_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000001625 142.0
DYD3_k127_5876371_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000006454 148.0
DYD3_k127_5881529_0 Surface antigen K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 376.0
DYD3_k127_5881529_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000002656 102.0
DYD3_k127_5886676_0 NADH:flavin oxidoreductase / NADH oxidase family K00317,K21833 - 1.5.8.1,1.5.8.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 526.0
DYD3_k127_5886676_1 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007801 302.0
DYD3_k127_5886676_2 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001002 233.0
DYD3_k127_5893825_0 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000001668 165.0
DYD3_k127_5893825_1 Enoyl-CoA hydratase carnithine racemase - - - 0.000000000000000000001925 96.0
DYD3_k127_5900164_0 Creatininase K01470 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005306 372.0
DYD3_k127_5900164_1 EVE domain - - - 0.0000000000000000000000000000000229 127.0
DYD3_k127_5900164_2 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.000000000000000000000000009858 116.0
DYD3_k127_5900164_3 - - - - 0.0000000000000000000008861 101.0
DYD3_k127_5900164_4 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000003753 70.0
DYD3_k127_5908694_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 533.0
DYD3_k127_5908694_1 General substrate transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 310.0
DYD3_k127_5920967_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.0 1089.0
DYD3_k127_5920967_1 This protein is involved in the repair of mismatches in DNA K03555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 305.0
DYD3_k127_5936834_0 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 351.0
DYD3_k127_5936834_1 cheY-homologous receiver domain K13589 - - 0.0000000000000000000000000000000000000000000000001594 179.0
DYD3_k127_5953969_0 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 453.0
DYD3_k127_5953969_1 PFAM Patatin K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001419 256.0
DYD3_k127_5953969_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000008274 183.0
DYD3_k127_5953969_3 PhnA domain K06193 - - 0.000000000000000000000000000000006326 128.0
DYD3_k127_5956397_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 7.902e-258 803.0
DYD3_k127_5956397_1 Chromatin associated protein KTI12 K07028 - - 0.00000000000000000000000000000000000000000000000000002104 193.0
DYD3_k127_5956397_2 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.00000000000000001685 82.0
DYD3_k127_601393_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007666 469.0
DYD3_k127_601393_1 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.0000000000000000000000000000000000000000004437 164.0
DYD3_k127_6034781_0 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 561.0
DYD3_k127_6046189_0 Protein of unknown function (DUF3604) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005137 259.0
DYD3_k127_6046189_1 peptidase M13 K07386 - - 0.000000000000000000000000000000000000000000000000000001537 200.0
DYD3_k127_6046189_2 gag-polyprotein putative aspartyl protease - - - 0.0000000000000000000000003405 117.0
DYD3_k127_6054246_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 402.0
DYD3_k127_6054246_1 PFAM MscS Mechanosensitive ion channel K16052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001207 284.0
DYD3_k127_6054246_2 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000004804 188.0
DYD3_k127_6054246_3 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000005414 148.0
DYD3_k127_6054246_4 cheY-homologous receiver domain - - - 0.00000000000000000000000000005975 131.0
DYD3_k127_6054246_5 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000009419 98.0
DYD3_k127_6054246_6 response regulator, receiver - - - 0.000000000000000004927 89.0
DYD3_k127_6059463_0 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 356.0
DYD3_k127_6063274_0 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000002393 129.0
DYD3_k127_6063274_1 Major Facilitator Superfamily - - - 0.000000000000000000000000005808 124.0
DYD3_k127_6063274_2 TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000000000001314 106.0
DYD3_k127_6066207_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 4.814e-208 659.0
DYD3_k127_6066207_1 Transcriptional regulatory protein, C terminal K02483 - - 0.000000000000000000000000000000000000000001877 158.0
DYD3_k127_6066207_2 EF hand - - - 0.00000004229 63.0
DYD3_k127_6068799_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 9.504e-241 755.0
DYD3_k127_6068799_1 Phytoene squalene synthetase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000002231 145.0
DYD3_k127_6081922_0 PFAM Sel1 domain protein repeat-containing protein K07126 - - 0.000000000000000005547 91.0
DYD3_k127_6082307_0 Sodium/hydrogen exchanger family K03316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006015 346.0
DYD3_k127_6082307_1 involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 296.0
DYD3_k127_6082307_2 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.000000000000000000000000000000000000000000000000006078 196.0
DYD3_k127_6082307_3 - - - - 0.00000000007885 66.0
DYD3_k127_6084562_0 Rieske 2Fe-2S - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006409 497.0
DYD3_k127_6084562_1 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 400.0
DYD3_k127_6084562_2 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008628 290.0
DYD3_k127_6084562_3 May be involved in the biosynthesis of molybdopterin K03638 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000001694 266.0
DYD3_k127_6084562_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000008049 156.0
DYD3_k127_6084562_5 FR47-like protein - - - 0.000000000000006787 77.0
DYD3_k127_6087604_0 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 325.0
DYD3_k127_6098803_0 Acetyl-coenzyme A transporter 1 K08218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009631 345.0
DYD3_k127_6098803_1 Acetyltransferase (GNAT) domain K22310 - 2.3.2.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005804 310.0
DYD3_k127_6098803_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006744 256.0
DYD3_k127_6098803_3 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000002008 170.0
DYD3_k127_6099845_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 431.0
DYD3_k127_6099845_1 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 409.0
DYD3_k127_6099845_2 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 373.0
DYD3_k127_6099845_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 316.0
DYD3_k127_6099845_4 Zn-dependent protease with chaperone function K03799,K06013 - 3.4.24.84 0.00000000000000000000000000000000000000001236 159.0
DYD3_k127_610723_0 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 293.0
DYD3_k127_610723_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000002792 87.0
DYD3_k127_6111457_0 AAA domain - - - 3.612e-224 722.0
DYD3_k127_6111457_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 312.0
DYD3_k127_6125604_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000002013 130.0
DYD3_k127_6125604_1 ATP-grasp - - - 0.000000000002317 70.0
DYD3_k127_6125604_2 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.000007208 58.0
DYD3_k127_614659_0 Glycosyl hydrolase family 57 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 479.0
DYD3_k127_6150267_0 PAS fold - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008689 438.0
DYD3_k127_6164610_0 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 325.0
DYD3_k127_6164610_1 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001315 278.0
DYD3_k127_6164610_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000502 256.0
DYD3_k127_6164610_3 Alpha-amylase domain K01182,K01187,K05343 - 3.2.1.1,3.2.1.10,3.2.1.20,5.4.99.16 0.000000000001505 67.0
DYD3_k127_617029_0 Peptidase, M16 - - - 5.375e-284 889.0
DYD3_k127_6173360_0 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 3.096e-254 795.0
DYD3_k127_6173360_1 AlkA N-terminal domain K13529 - 3.2.2.21 6.69e-203 645.0
DYD3_k127_6173360_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 561.0
DYD3_k127_6173360_3 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 537.0
DYD3_k127_6173360_4 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 452.0
DYD3_k127_6173360_5 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000001868 148.0
DYD3_k127_6173360_6 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000002475 60.0
DYD3_k127_6182361_0 Bacteriophage head to tail connecting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 360.0
DYD3_k127_6182361_1 - - - - 0.0000000000000000000001489 108.0
DYD3_k127_6182361_2 - - - - 0.000000000000002679 81.0
DYD3_k127_618430_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 366.0
DYD3_k127_618430_1 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 371.0
DYD3_k127_618430_2 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006069 254.0
DYD3_k127_618430_3 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000002898 232.0
DYD3_k127_618628_0 short-chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001137 280.0
DYD3_k127_618628_1 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.00000000000000000000000000000000000000000000000001257 194.0
DYD3_k127_618628_2 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000001398 186.0
DYD3_k127_618628_3 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000002493 52.0
DYD3_k127_6189806_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 417.0
DYD3_k127_6189806_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001324 245.0
DYD3_k127_6189806_2 COG0861 Membrane protein TerC, possibly involved in tellurium resistance - - - 0.00000000000000000000000000000000000000000000000000000000000005297 224.0
DYD3_k127_6189806_3 Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000008041 215.0
DYD3_k127_620660_0 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000000000006895 195.0
DYD3_k127_620660_1 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000009413 111.0
DYD3_k127_620660_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000002181 101.0
DYD3_k127_6213683_0 ATP-grasp domain K09181 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 322.0
DYD3_k127_6213683_1 Psort location Cytoplasmic, score K14731 - 3.1.1.83 0.000000000000000000000000000000000000000000000000000000000000000008461 237.0
DYD3_k127_6213683_2 PFAM Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000003604 221.0
DYD3_k127_6213683_3 Hsp20/alpha crystallin family K13993 - - 0.00000000000000000000000000000000000007046 149.0
DYD3_k127_6213683_4 Domain of unknown function (DUF4440) - - - 0.0000000003702 67.0
DYD3_k127_6213683_5 - K11068 - - 0.00000000127 63.0
DYD3_k127_622399_0 Acetylornithine deacetylase Succinyl-diaminopimelate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 524.0
DYD3_k127_622399_1 Protein of unknown function (DUF454) K09790 - - 0.0000000000000000000000000000001173 129.0
DYD3_k127_622399_2 Alpha beta hydrolase - - - 0.0000000000000000000003841 95.0
DYD3_k127_6227708_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 7.439e-264 827.0
DYD3_k127_6227708_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003759 276.0
DYD3_k127_6227708_2 Dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000001143 148.0
DYD3_k127_6228766_0 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 473.0
DYD3_k127_6228766_1 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 393.0
DYD3_k127_623203_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 GO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 2.981e-253 801.0
DYD3_k127_623203_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 329.0
DYD3_k127_6233526_0 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000006399 198.0
DYD3_k127_6233526_1 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000005951 145.0
DYD3_k127_6233526_2 protein conserved in bacteria K15539 - - 0.00000000000000000000000000002615 131.0
DYD3_k127_6233691_0 Berberine and berberine like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 436.0
DYD3_k127_6233691_1 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002904 252.0
DYD3_k127_6233691_2 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000001797 198.0
DYD3_k127_6233691_3 Cytochrome c - - - 0.0000000000000000000000000009785 116.0
DYD3_k127_6236748_0 Alkyl sulfatase dimerisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 519.0
DYD3_k127_6236748_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000002594 110.0
DYD3_k127_6236748_2 - - - - 0.0000000000000007673 84.0
DYD3_k127_6241280_0 flagellum-specific ATP synthase K02412 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 596.0
DYD3_k127_6241280_1 flagellar export protein FliJ - - - 0.000000000000003438 78.0
DYD3_k127_625885_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00322 - 1.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 348.0
DYD3_k127_625885_1 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 335.0
DYD3_k127_625885_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000006772 211.0
DYD3_k127_625885_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000003267 124.0
DYD3_k127_6289618_0 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002713 320.0
DYD3_k127_6289618_1 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000003292 242.0
DYD3_k127_6289618_2 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000005305 236.0
DYD3_k127_6289618_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000007494 228.0
DYD3_k127_629841_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000434 198.0
DYD3_k127_629841_1 phosphodiesterase K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000003227 175.0
DYD3_k127_629841_2 - - - - 0.00000000000000000000000000000000000000006967 155.0
DYD3_k127_6301000_0 Outer membrane protein beta-barrel family - - - 2.225e-223 717.0
DYD3_k127_6301000_1 3-phytase (Myo-inositol-hexaphosphate 3-phosphohydrolase) K01083 - 3.1.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000005309 256.0
DYD3_k127_6301000_2 Protein of unknown function (DUF3089) - - - 0.0000000000000000000000000000000000000000000000000000000000000009359 233.0
DYD3_k127_6301000_3 transcriptional regulator - GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010035,GO:0010038,GO:0010288,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032791,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046870,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097063,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000004574 184.0
DYD3_k127_6301000_4 Flavodoxin domain K00230 - 1.3.5.3 0.00000000000000000000000000000000000000000000000004501 184.0
DYD3_k127_6301000_5 NIPSNAP - - - 0.00000000000000000000000000000000000000000002276 165.0
DYD3_k127_6301000_6 Transcriptional regulator - - - 0.0000000006814 60.0
DYD3_k127_6301000_7 Calmodulin-like protein 1 K13448 GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872 - 0.00048 51.0
DYD3_k127_6307488_0 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 347.0
DYD3_k127_6307488_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001676 284.0
DYD3_k127_6307488_2 InterPro IPR014922 - - - 0.0000000000000000000000000000000000000003525 153.0
DYD3_k127_6307488_3 SnoaL-like domain - - - 0.0000000000000000000000000000000001306 141.0
DYD3_k127_6325069_0 Aldehyde dehydrogenase 3 family, member A2 K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 359.0
DYD3_k127_6325069_1 PFAM 20S proteasome, A and B subunits K07395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001909 256.0
DYD3_k127_6325069_2 COG2199 FOG GGDEF domain K07216,K13590 - 2.7.7.65 0.000000000000001849 81.0
DYD3_k127_6347677_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 286.0
DYD3_k127_6347677_1 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000003343 246.0
DYD3_k127_6351463_0 AsmA-like C-terminal region K07289 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 366.0
DYD3_k127_6353182_0 COG0642 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007558 395.0
DYD3_k127_6353182_1 phosphorelay signal transduction system - - - 0.000000000000001118 85.0
DYD3_k127_6353182_2 - - - - 0.000000188 61.0
DYD3_k127_6359639_0 GAF domain - - - 0.000000000000000000000000000000000000000000000000000001219 205.0
DYD3_k127_6359639_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000001062 191.0
DYD3_k127_6359639_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000003299 121.0
DYD3_k127_6359639_3 Predicted membrane protein (DUF2061) - - - 0.000000000000000000255 90.0
DYD3_k127_6359639_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000004838 89.0
DYD3_k127_6360377_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 378.0
DYD3_k127_6360377_1 Transmembrane domain of unknown function (DUF3566) - GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000000000008326 74.0
DYD3_k127_6370653_0 Domain of unknown function (DUF3473) - - - 0.000000000000000000000000000000000000000000000000000000000000000008599 238.0
DYD3_k127_6370653_1 Polysaccharide chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000005804 210.0
DYD3_k127_6370653_2 CobQ CobB MinD ParA nucleotide binding domain - - - 0.0000000000007413 77.0
DYD3_k127_6370653_3 Protein conserved in bacteria - - - 0.00000000004686 75.0
DYD3_k127_6372509_0 PFAM Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 364.0
DYD3_k127_6372509_1 - - - - 0.0000000000000000000000000000000000000000000000000000000006163 205.0
DYD3_k127_6373927_0 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 321.0
DYD3_k127_6373927_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.2.8 0.00000000000000000000000000000000000000000000000000001434 197.0
DYD3_k127_6373927_2 cheY-homologous receiver domain - - - 0.0000000000000000000000000000003657 128.0
DYD3_k127_6373927_3 TIGRFAM MJ0042 family finger-like protein - - - 0.0000000000000000000000000000009818 131.0
DYD3_k127_6373927_4 Cell division protein K09811 - - 0.000000000000000000000000003207 116.0
DYD3_k127_6378760_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.0 1029.0
DYD3_k127_6395213_0 Electron transfer flavoprotein K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 419.0
DYD3_k127_6395213_1 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001455 246.0
DYD3_k127_6395213_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000006955 146.0
DYD3_k127_6398087_0 GGDEF domain K03413 - - 0.000000000000000000002863 96.0
DYD3_k127_6398087_1 Transcriptional regulator K18098 - - 0.00000000000000002108 92.0
DYD3_k127_6398087_2 Transcriptional regulator - - - 0.00000000000002572 83.0
DYD3_k127_6398774_0 Domain of unknown function DUF21 K03699 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 486.0
DYD3_k127_6398774_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 396.0
DYD3_k127_6398774_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000218 220.0
DYD3_k127_6398774_3 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000002731 168.0
DYD3_k127_6398774_4 Belongs to the BolA IbaG family K05527,K22066 GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0071704,GO:0097428,GO:0106035,GO:1901564 - 0.0000000000000000000000000665 110.0
DYD3_k127_6398774_5 - - - - 0.0000000000000000009718 100.0
DYD3_k127_6407076_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 575.0
DYD3_k127_6407076_1 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 439.0
DYD3_k127_6407076_2 TIGRFAM cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 427.0
DYD3_k127_6418209_0 Outer membrane receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 456.0
DYD3_k127_6418209_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 435.0
DYD3_k127_6418209_2 transport system permease component K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005814 285.0
DYD3_k127_6418889_0 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K10764 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 552.0
DYD3_k127_6418889_1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004382 489.0
DYD3_k127_6418889_2 Peptidase dimerisation domain K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002737 387.0
DYD3_k127_6418889_3 GTP cyclohydrolase K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005118 322.0
DYD3_k127_6418889_4 redox protein regulator of disulfide bond formation - - - 0.0000000000000000000000000000000000000000000000002777 179.0
DYD3_k127_6418889_5 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000005459 179.0
DYD3_k127_6421234_0 Rod shape-determining protein (MreB) K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000001565 232.0
DYD3_k127_6421234_1 shape-determining protein MreC K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000002462 235.0
DYD3_k127_6421234_2 COG0768 cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 0.0000000000000000000001115 100.0
DYD3_k127_6421234_3 shape-determining protein K03571 - - 0.0000000000000000000004159 104.0
DYD3_k127_6434067_0 amidohydrolase K07045 - - 1.26e-201 635.0
DYD3_k127_6434067_1 KR domain - - - 0.000000000000002056 89.0
DYD3_k127_6437523_0 Pyrimidine nucleoside phosphorylase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 595.0
DYD3_k127_6437523_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00124,K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000001468 210.0
DYD3_k127_6437523_2 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00127 - - 0.0000000000000000000000000000000000000000000000000000001206 198.0
DYD3_k127_6437523_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000001243 142.0
DYD3_k127_6437523_4 ChaB K06197 - - 0.000000000000000000000003027 103.0
DYD3_k127_6437523_5 - - - - 0.0000000000236 74.0
DYD3_k127_645463_0 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 317.0
DYD3_k127_645463_1 Parallel beta-helix repeats - - - 0.0000000000000000000001193 113.0
DYD3_k127_645463_2 peptidyl-tyrosine sulfation - - - 0.000007003 58.0
DYD3_k127_645828_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000005601 206.0
DYD3_k127_645828_1 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000007791 210.0
DYD3_k127_6459252_0 Type II secretion system (T2SS), protein F K12511 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 366.0
DYD3_k127_6459252_1 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000009744 213.0
DYD3_k127_6459252_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000009302 188.0
DYD3_k127_6459252_3 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000001786 169.0
DYD3_k127_6464918_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 371.0
DYD3_k127_6464918_1 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000226 263.0
DYD3_k127_6464918_2 Cold shock protein domain K03704 - - 0.0000000000000000001168 98.0
DYD3_k127_6469614_0 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000002771 236.0
DYD3_k127_6469614_1 Gram-negative porin K08720 - - 0.00000000000000000000381 106.0
DYD3_k127_6469614_2 Gram-negative porin K08720 - - 0.0000000000000002158 92.0
DYD3_k127_6469614_3 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.0000000000001964 79.0
DYD3_k127_6489835_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 288.0
DYD3_k127_6489835_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 282.0
DYD3_k127_6489835_2 Transposase IS200 like K07445 - - 0.0000000000000000000000000000000000000000000000000000000000000003025 225.0
DYD3_k127_6500132_0 COG0346 Lactoylglutathione lyase and related lyases - - - 0.0000000000000000000000000000000000000000000009131 170.0
DYD3_k127_6500132_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000007262 158.0
DYD3_k127_6500132_2 Protein of unknown function (DUF4199) - - - 0.0000000000000000000000000000000000006495 151.0
DYD3_k127_6505539_0 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 360.0
DYD3_k127_6505539_1 PFAM major facilitator superfamily MFS_1 K03292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008168 334.0
DYD3_k127_6505539_2 Nucleoside transporter K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009685 244.0
DYD3_k127_6505539_3 Protein of unknown function (DUF559) - - - 0.00000000000000000001228 99.0
DYD3_k127_6522099_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 384.0
DYD3_k127_6522099_1 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000557 276.0
DYD3_k127_6522099_2 Ribosomal protein L6 K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000007052 231.0
DYD3_k127_6522099_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000002558 218.0
DYD3_k127_6522099_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000001175 213.0
DYD3_k127_6522099_5 Binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000000000001623 192.0
DYD3_k127_6522099_6 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000001205 153.0
DYD3_k127_6522099_7 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000000006065 139.0
DYD3_k127_6522099_8 ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000002603 78.0
DYD3_k127_6523409_0 aldo keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 445.0
DYD3_k127_6523409_1 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000000000000007688 178.0
DYD3_k127_6523409_2 Zincin-like metallopeptidase K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000002713 165.0
DYD3_k127_6523409_3 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000002802 128.0
DYD3_k127_6527801_0 His Kinase A (phosphoacceptor) domain K07716 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 440.0
DYD3_k127_6541037_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005349 331.0
DYD3_k127_6541037_1 DoxX K15977 - - 0.000000000000000000000000000000000000000003819 159.0
DYD3_k127_6541037_2 PFAM surface antigen msp4 family protein - - - 0.0000003773 60.0
DYD3_k127_6545076_0 AI-2E family transporter - - - 0.000000000000000000000000000234 130.0
DYD3_k127_6545076_1 - - - - 0.00000000000000000000183 99.0
DYD3_k127_6545076_2 response to cobalt ion - - - 0.00000000000000001099 94.0
DYD3_k127_654533_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000001835 231.0
DYD3_k127_654533_1 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000000000000000000000000000006797 163.0
DYD3_k127_6561116_0 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 343.0
DYD3_k127_6561116_1 Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000005744 230.0
DYD3_k127_6561116_2 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000001101 205.0
DYD3_k127_6575558_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 353.0
DYD3_k127_6575558_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000003068 247.0
DYD3_k127_6575558_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000001086 158.0
DYD3_k127_658019_0 Belongs to the DnaA family - - - 0.0000000000000000000000000000000000000000000000000002116 201.0
DYD3_k127_658019_1 Uncharacterized protein conserved in bacteria (DUF2066) - - - 0.00000000000000000000000000000000000000000000002008 184.0
DYD3_k127_658019_2 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.00000000000000000000000000000000000003779 147.0
DYD3_k127_658019_3 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.00000000000000000000000000000000776 136.0
DYD3_k127_6582766_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 335.0
DYD3_k127_6582766_1 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 294.0
DYD3_k127_6582766_2 Exporters of the RND superfamily K07003 - - 0.000000000000000000000000000000000001148 141.0
DYD3_k127_6611461_0 Glutathione S-transferase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005913 417.0
DYD3_k127_6611461_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001568 230.0
DYD3_k127_6611461_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000001809 187.0
DYD3_k127_6611461_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000004291 169.0
DYD3_k127_6611461_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins - - - 0.0000000000000000000000000000000000009045 144.0
DYD3_k127_6611461_5 Predicted membrane protein (DUF2061) - - - 0.0000000000000000001223 90.0
DYD3_k127_6611461_6 - - - - 0.00000000000000001685 87.0
DYD3_k127_6624071_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1040.0
DYD3_k127_6624071_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000003409 219.0
DYD3_k127_6624071_2 COG2513 PEP phosphonomutase and related enzymes K03417 - 4.1.3.30 0.000000000007473 67.0
DYD3_k127_6645454_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18989 - - 0.0 1072.0
DYD3_k127_6645454_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion K18990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008108 341.0
DYD3_k127_6645454_2 Iron permease FTR1 family K07243 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000422 280.0
DYD3_k127_6645454_3 Copper amine oxidase - - - 0.0000000000000000000000000000000000000002096 163.0
DYD3_k127_6645454_4 Cupredoxin-like domain - - - 0.000000000000000000000000000000000002608 144.0
DYD3_k127_6645454_5 FecR protein - - - 0.0000000000000000004075 95.0
DYD3_k127_6645454_6 YHS domain K17686 - 3.6.3.54 0.000000000000007913 76.0
DYD3_k127_6645454_7 LTXXQ motif family protein - - - 0.00000000003562 71.0
DYD3_k127_6645454_8 TIGRFAM outer membrane autotransporter barrel domain protein - - - 0.000000009534 69.0
DYD3_k127_664703_0 diguanylate cyclase K07216,K13590 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000005564 259.0
DYD3_k127_664703_1 acyl-L-homoserine-lactone lactonohydrolase activity K13075 - 3.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000492 227.0
DYD3_k127_6650620_0 Protein of unknown function (DUF1302) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 490.0
DYD3_k127_6650620_1 Ferric uptake regulator family K09823 - - 0.00000000000000000000000000000000000000000664 159.0
DYD3_k127_6650620_2 Belongs to the flagella basal body rod proteins family K02388 - - 0.000003141 53.0
DYD3_k127_6650891_0 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 522.0
DYD3_k127_6650891_1 Outer membrane receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 332.0
DYD3_k127_665760_0 Quinolinate synthetase A protein K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 470.0
DYD3_k127_665760_1 belongs to the nudix hydrolase family - - - 0.00000000000000000000000000000000000000000000002105 173.0
DYD3_k127_665760_2 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000001421 118.0
DYD3_k127_665760_3 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000002489 79.0
DYD3_k127_6663368_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.0 1127.0
DYD3_k127_6663368_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006267 277.0
DYD3_k127_6665364_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360,GO:1901564 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007545 416.0
DYD3_k127_6665364_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000003808 227.0
DYD3_k127_6665364_2 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000177 206.0
DYD3_k127_6665364_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000001562 213.0
DYD3_k127_66676_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 5.86e-240 752.0
DYD3_k127_66676_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 548.0
DYD3_k127_66676_2 tRNA synthetases class I (C) catalytic domain K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000004376 203.0
DYD3_k127_667793_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002056 273.0
DYD3_k127_667793_1 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001549 258.0
DYD3_k127_667793_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.00000000000000000000000000000000000000000000000001798 199.0
DYD3_k127_667793_3 FecR protein - - - 0.00000000000005954 85.0
DYD3_k127_6686034_0 SpoVR family K06415 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004868 609.0
DYD3_k127_6686034_1 Belongs to the UPF0229 family K09786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 572.0
DYD3_k127_6686034_2 PrkA AAA domain K07180 - - 0.00000000000000000000000000000000000000000001344 162.0
DYD3_k127_6686034_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000001289 105.0
DYD3_k127_6687490_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 1.993e-283 885.0
DYD3_k127_6687490_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 541.0
DYD3_k127_6687490_10 - - - - 0.00000000000000000000003659 110.0
DYD3_k127_6687490_2 Saccharopine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 426.0
DYD3_k127_6687490_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 326.0
DYD3_k127_6687490_4 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001671 286.0
DYD3_k127_6687490_5 Glutathione S-transferase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001321 271.0
DYD3_k127_6687490_6 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000257 250.0
DYD3_k127_6687490_7 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.000000000000000000000000000000000000000000000000000000000000000000008892 238.0
DYD3_k127_6687490_8 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000001242 213.0
DYD3_k127_6687490_9 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000000001057 168.0
DYD3_k127_6691762_0 Histidine kinase - - - 8.998e-202 640.0
DYD3_k127_6691762_1 Putative member of DMT superfamily (DUF486) K09922 - - 0.00000000000000000000000000000000000000000000000003135 181.0
DYD3_k127_6691762_2 Phosphoglycerate mutase - - - 0.0000000000000000000000000000000000000000000299 162.0
DYD3_k127_6691762_3 Response regulator, receiver - - - 0.0000000000000000000001531 102.0
DYD3_k127_6691762_4 Protein of unknown function (DUF423) - - - 0.000001312 55.0
DYD3_k127_6695209_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 527.0
DYD3_k127_6695209_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 466.0
DYD3_k127_6695209_2 Cell cycle protein K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 439.0
DYD3_k127_6695209_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005791 314.0
DYD3_k127_6699915_0 transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000001062 237.0
DYD3_k127_6699915_1 - - - - 0.000000001415 61.0
DYD3_k127_6719124_0 choline monooxygenase activity K00499 - 1.14.15.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 552.0
DYD3_k127_6719124_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000275 268.0
DYD3_k127_6719124_2 Protein conserved in bacteria K09983 - - 0.000000000000000000000000000000000000000000000000000000000000000001611 232.0
DYD3_k127_6719124_3 - - - - 0.00000000000007426 77.0
DYD3_k127_6719854_0 Protoglobin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 411.0
DYD3_k127_6719854_1 Crp-like helix-turn-helix domain - - - 0.000000000000000000000000000395 122.0
DYD3_k127_6725420_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.007e-276 857.0
DYD3_k127_6725420_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 505.0
DYD3_k127_6725420_2 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 406.0
DYD3_k127_6725420_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000216 386.0
DYD3_k127_6725420_4 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 350.0
DYD3_k127_6725420_5 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 353.0
DYD3_k127_6725420_6 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 306.0
DYD3_k127_6725420_7 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000008648 227.0
DYD3_k127_6725420_8 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000009274 179.0
DYD3_k127_6725420_9 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000001764 94.0
DYD3_k127_6726289_0 signal peptide peptidase K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 418.0
DYD3_k127_6726289_1 neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004616 254.0
DYD3_k127_6727361_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 506.0
DYD3_k127_6727361_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008618 473.0
DYD3_k127_6727361_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000008081 241.0
DYD3_k127_6736515_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 443.0
DYD3_k127_6736515_1 Glutathione S-transferase K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 290.0
DYD3_k127_6746064_0 TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008932 404.0
DYD3_k127_6746064_1 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 310.0
DYD3_k127_6746064_2 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007816 304.0
DYD3_k127_6746064_3 Flagellar protein FlbT K06601 - - 0.000000000000000000000000000000000000000000000000002549 186.0
DYD3_k127_6746064_4 PFAM flagellar FlaF family protein K06602 - - 0.00000000000000000000000008358 110.0
DYD3_k127_6750258_0 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 304.0
DYD3_k127_6750258_1 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001535 246.0
DYD3_k127_6750258_2 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000000000007895 228.0
DYD3_k127_6756694_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 556.0
DYD3_k127_6756694_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002425 245.0
DYD3_k127_6756694_2 ISXO2-like transposase domain - - - 0.000000000000000000000000000000000002478 142.0
DYD3_k127_6756694_3 Domain of unknown function (DU1801) - - - 0.000447 42.0
DYD3_k127_6776788_0 Putative diguanylate phosphodiesterase K13593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 306.0
DYD3_k127_6776788_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001115 248.0
DYD3_k127_6776788_2 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000001041 222.0
DYD3_k127_6776788_3 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000005161 95.0
DYD3_k127_6783743_0 COG3307 Lipid A core - O-antigen ligase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004496 282.0
DYD3_k127_6813871_0 Glycosyl transferase family 21 - - - 1.714e-229 735.0
DYD3_k127_6816209_0 RNA pseudouridylate synthase K06179 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009175 360.0
DYD3_k127_6816209_1 AAA C-terminal domain K07478 GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0030894,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000002394 208.0
DYD3_k127_6816209_2 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000004806 206.0
DYD3_k127_6816209_3 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000000000000000000000001272 146.0
DYD3_k127_6816209_4 COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000008768 118.0
DYD3_k127_6816209_5 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000001079 107.0
DYD3_k127_6816209_6 - - - - 0.0000000000001234 81.0
DYD3_k127_6824026_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 483.0
DYD3_k127_6824026_1 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000001665 214.0
DYD3_k127_6824971_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006 - 2.7.9.1 1.719e-248 775.0
DYD3_k127_6833356_0 Methyltransferase domain - - - 0.000000000000000000000000000003137 128.0
DYD3_k127_6833356_1 HAF family - - - 0.0000000000000003345 93.0
DYD3_k127_6837229_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 416.0
DYD3_k127_6837229_1 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 415.0
DYD3_k127_6837229_2 Histidine kinase K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009878 334.0
DYD3_k127_6837229_3 Ketosteroid isomerase-related protein - - - 0.00000000000000000000000000000000000002069 147.0
DYD3_k127_6837229_4 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.0000000000000000000000007096 114.0
DYD3_k127_6837229_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000004491 96.0
DYD3_k127_6837229_6 PFAM YCII-related domain - - - 0.00000000000003979 85.0
DYD3_k127_6864440_0 AMP-binding enzyme C-terminal domain K00666 - - 1.071e-225 714.0
DYD3_k127_6864440_1 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 338.0
DYD3_k127_6864440_2 Protein of unknown function (DUF1013) K09987 - - 0.00000000000000000000000000000000000000000000000000000000000000000001044 240.0
DYD3_k127_6865847_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 330.0
DYD3_k127_6865847_1 Endonuclease Exonuclease Phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003868 259.0
DYD3_k127_6865847_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000002621 168.0
DYD3_k127_6876703_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 437.0
DYD3_k127_6876703_1 SMP-30 Gluconolaconase K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001027 271.0
DYD3_k127_6876703_2 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000009089 128.0
DYD3_k127_6876703_3 - - - - 0.0004501 51.0
DYD3_k127_6896935_0 Alpha beta hydrolase K01563 - 3.8.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 469.0
DYD3_k127_6896935_1 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 406.0
DYD3_k127_6896935_2 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000002079 133.0
DYD3_k127_6896935_3 - - - - 0.0000001523 63.0
DYD3_k127_6913854_0 Thioesterase-like superfamily K10805 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016042,GO:0016054,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042802,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0047617,GO:0051186,GO:0055086,GO:0071704,GO:0072329,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005008 289.0
DYD3_k127_6914088_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002118 529.0
DYD3_k127_6914088_1 tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 398.0
DYD3_k127_6914088_2 Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000000000000007236 227.0
DYD3_k127_6919179_0 of nitrite reductase and ring-hydroxylating dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 362.0
DYD3_k127_6919179_1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000545 241.0
DYD3_k127_6919179_2 - - - - 0.0000000634 59.0
DYD3_k127_6919179_3 - - - - 0.000000859 55.0
DYD3_k127_6925915_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 372.0
DYD3_k127_6925915_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000002293 167.0
DYD3_k127_6925915_2 CDGSH-type zinc finger. Function unknown. - - - 0.0000000000000000000000000000000001216 134.0
DYD3_k127_6925915_3 - - - - 0.000000004458 64.0
DYD3_k127_6933248_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 353.0
DYD3_k127_6933248_1 Fungal family of unknown function (DUF1776) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001166 248.0
DYD3_k127_6933248_2 TIGRFAM outer membrane autotransporter barrel domain - - - 0.000000000000002857 90.0
DYD3_k127_6933248_3 - - - - 0.0000001867 63.0
DYD3_k127_6944450_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 1.169e-280 880.0
DYD3_k127_6944450_1 tetratricopeptide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 394.0
DYD3_k127_6944450_2 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000001168 249.0
DYD3_k127_6945696_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001124 274.0
DYD3_k127_6945696_1 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000004583 140.0
DYD3_k127_6947169_0 Saccharopine dehydrogenase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 512.0
DYD3_k127_6947169_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003543 488.0
DYD3_k127_6947169_2 mitochondrial tRNA-specific 2-thiouridylase K21027 - 2.8.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000719 475.0
DYD3_k127_6947169_3 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501 - 3.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 452.0
DYD3_k127_6947169_4 Belongs to the flagella basal body rod proteins family K02396 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008409 368.0
DYD3_k127_6947169_5 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000002836 240.0
DYD3_k127_6947169_6 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02397 - - 0.000000000000000000000000000000000000000002662 167.0
DYD3_k127_6947169_7 helix_turn_helix ASNC type - - - 0.000000000000000000000000000000000006678 149.0
DYD3_k127_6947637_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 9.18e-206 657.0
DYD3_k127_6952228_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 575.0
DYD3_k127_6952228_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005092 430.0
DYD3_k127_6952228_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 395.0
DYD3_k127_6954200_0 COG2931 RTX toxins and related Ca2 -binding proteins K01406,K07004 - 3.4.24.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 416.0
DYD3_k127_6954200_1 methyltransferase K03183,K21600 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000002176 166.0
DYD3_k127_6954200_2 Domain of unknown function (DUF4337) - - - 0.00000000000000000000000000000000000000004528 158.0
DYD3_k127_6954200_3 Glycine zipper 2TM domain - - - 0.0000000000000000000000000000002181 134.0
DYD3_k127_6954200_4 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 0.000000000000005662 77.0
DYD3_k127_6961093_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008286 522.0
DYD3_k127_6961093_1 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000005045 187.0
DYD3_k127_6961093_2 protein conserved in bacteria containing a divergent form of TPR repeats - - - 0.0000000000415 64.0
DYD3_k127_696476_0 Periplasmic solute binding protein K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 381.0
DYD3_k127_696476_1 phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 364.0
DYD3_k127_696476_2 ABC-3 protein K02075 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005961 299.0
DYD3_k127_696476_3 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000001416 162.0
DYD3_k127_6967118_0 COG1680 Beta-lactamase class C and other penicillin binding proteins K01286,K08641 - 3.4.13.22,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005396 541.0
DYD3_k127_6970606_0 PQQ enzyme repeat K17760 - 1.1.9.1 2.594e-254 804.0
DYD3_k127_6983419_0 AMP-binding enzyme C-terminal domain K00666,K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 617.0
DYD3_k127_6983419_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000002481 82.0
DYD3_k127_699247_0 Penicillin-Binding Protein C-terminus Family K05367 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007017 577.0
DYD3_k127_699247_1 Alpha-2-Macroglobulin K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 381.0
DYD3_k127_6999621_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000008478 225.0
DYD3_k127_6999621_1 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.000000000000000000000000000000000000005654 155.0
DYD3_k127_7000250_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 379.0
DYD3_k127_7000250_1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 298.0
DYD3_k127_7000250_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000738 58.0
DYD3_k127_7007315_0 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 328.0
DYD3_k127_7007315_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003907 280.0
DYD3_k127_7007315_2 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000000000000000000000000005154 205.0
DYD3_k127_7007315_3 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.0000000000000000000000000000000000000000000000000007751 190.0
DYD3_k127_7007315_4 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000002408 102.0
DYD3_k127_7007315_5 - - - - 0.0000000000000000002776 91.0
DYD3_k127_7014963_0 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000003287 253.0
DYD3_k127_7014963_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000001964 59.0
DYD3_k127_7028855_0 Histidine kinase K07675 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003471 384.0
DYD3_k127_7028855_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 307.0
DYD3_k127_7028855_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004017 254.0
DYD3_k127_7028855_3 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000000569 94.0
DYD3_k127_7031167_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07638 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 432.0
DYD3_k127_7031167_1 Transcriptional regulatory protein, C terminal K07659 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 284.0
DYD3_k127_7031167_10 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000001057 79.0
DYD3_k127_7031167_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000003231 224.0
DYD3_k127_7031167_3 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0003674,GO:0003824,GO:0004735,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000734 214.0
DYD3_k127_7031167_4 Putative bacterial sensory transduction regulator - - - 0.0000000000000000000000000000000000000000000000003249 181.0
DYD3_k127_7031167_5 Putative tRNA binding domain K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000002435 178.0
DYD3_k127_7031167_6 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000001626 125.0
DYD3_k127_7031167_7 transcriptional regulator - - - 0.000000000000000000000002242 110.0
DYD3_k127_7031167_8 Phasin protein - - - 0.00000000000000000001114 98.0
DYD3_k127_7031167_9 Membrane fusogenic activity K09806 - - 0.00000000000000004452 85.0
DYD3_k127_7043786_0 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008249 428.0
DYD3_k127_7043786_1 Tetrapyrrole (Corrin/Porphyrin) Methylases K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 389.0
DYD3_k127_7043786_10 - - - - 0.0000000003278 67.0
DYD3_k127_7043786_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 383.0
DYD3_k127_7043786_3 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 354.0
DYD3_k127_7043786_4 chemotaxis MotB protein K02557 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004496 337.0
DYD3_k127_7043786_5 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 2.3.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004173 322.0
DYD3_k127_7043786_6 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000007177 178.0
DYD3_k127_7043786_7 protease K06985 - - 0.000000000000000000000000000000000000004928 154.0
DYD3_k127_7043786_8 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000001113 100.0
DYD3_k127_7043786_9 Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP) K00758,K05774 - 2.4.2.4,2.7.4.23 0.0000000001344 72.0
DYD3_k127_704491_1 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.0000000000000000000000000000003408 128.0
DYD3_k127_704491_2 - - - - 0.000000000003065 78.0
DYD3_k127_7046126_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009175 509.0
DYD3_k127_7046126_1 KR domain - - - 0.0000000000000000000000000000000000000000005807 167.0
DYD3_k127_7046126_2 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.00000000000000000000000000000000000001842 145.0
DYD3_k127_7046126_3 oxidation-reduction process - - - 0.0000000000000000000000000000283 118.0
DYD3_k127_7046126_4 Chorismate mutase type II K04782 - 4.2.99.21 0.000000000000000000000000008027 114.0
DYD3_k127_7046260_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138,K18307 - - 2.627e-222 706.0
DYD3_k127_7047434_0 Putative modulator of DNA gyrase K03568 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 3.508e-223 698.0
DYD3_k127_7047434_1 Ring hydroxylating alpha subunit (catalytic domain) - - - 0.00000000000000000000000000000000000000000000000003712 191.0
DYD3_k127_7048515_0 Sugar (and other) transporter K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008459 438.0
DYD3_k127_7048515_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 353.0
DYD3_k127_7048515_2 acetyltransferase K03824 - - 0.000000000000000000000000000000000000127 152.0
DYD3_k127_7048515_3 ADP-ribose pyrophosphatase K03574 - 3.6.1.55 0.000000000000000000000000000000000004855 141.0
DYD3_k127_7049246_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 494.0
DYD3_k127_7049246_1 Lipopolysaccharide-assembly K03643 - - 0.000000000000000000000000001974 119.0
DYD3_k127_7062001_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015627,GO:0015628,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:0098776,GO:1901265,GO:1901363,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006765 381.0
DYD3_k127_7062001_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008086 344.0
DYD3_k127_7062541_0 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000001904 175.0
DYD3_k127_7062541_1 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.00000000000000000000000000000000007 142.0
DYD3_k127_7062541_2 Flagellar regulatory protein FleQ - - - 0.0000000000000000005438 91.0
DYD3_k127_7080392_0 Cupin superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009414 333.0
DYD3_k127_7080392_1 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000008651 116.0
DYD3_k127_7081239_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 1108.0
DYD3_k127_708328_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 499.0
DYD3_k127_708328_1 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 356.0
DYD3_k127_708328_2 Carbon-nitrogen hydrolase K11206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 295.0
DYD3_k127_708328_3 Alpha Beta - - - 0.00000000000000000000000000000000000000000000000001181 203.0
DYD3_k127_708328_4 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000000000000007773 153.0
DYD3_k127_708328_5 Transcriptional regulator - - - 0.00000000000000000002249 100.0
DYD3_k127_7089307_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 323.0
DYD3_k127_7089307_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 295.0
DYD3_k127_7090157_0 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 483.0
DYD3_k127_7090157_1 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000001579 195.0
DYD3_k127_7092867_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005303 308.0
DYD3_k127_7092867_1 response regulator K02485 - - 0.00000000000000000000000000000000000000001379 159.0
DYD3_k127_7092867_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000001577 125.0
DYD3_k127_7100665_0 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 4.636e-225 705.0
DYD3_k127_7100665_1 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000003095 150.0
DYD3_k127_7103409_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006215 429.0
DYD3_k127_7103409_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000584 362.0
DYD3_k127_7103409_2 PFAM AMP-dependent synthetase and ligase K00666,K18688 - 6.2.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 289.0
DYD3_k127_7103409_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000005045 143.0
DYD3_k127_7103409_4 Lipid A 3-O-deacylase (PagL) - - - 0.0000000000000000000000000000002281 130.0
DYD3_k127_7116075_0 reductase K00001,K14446 - 1.1.1.1,1.3.1.85 1.976e-249 774.0
DYD3_k127_7116075_1 Acetyltransferase (GNAT) family - - - 0.00000000000004158 80.0
DYD3_k127_7122957_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 7.302e-200 628.0
DYD3_k127_7126221_0 Putative peptidoglycan binding domain - - - 0.00000000000000000000000000000000004199 152.0
DYD3_k127_7157017_0 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003502 406.0
DYD3_k127_7157017_1 TadE-like protein K02651 - - 0.00000000000000000000000000000000000000000003892 167.0
DYD3_k127_7157017_2 TadE-like protein - - - 0.0000000000000000000000000000005246 128.0
DYD3_k127_7157017_3 Histidine kinase K01768,K03406,K07315 - 3.1.3.3,4.6.1.1 0.000000000276 74.0
DYD3_k127_7188742_0 Diguanylate cyclase, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003778 240.0
DYD3_k127_7188742_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000009636 169.0
DYD3_k127_7188742_2 small protein containing a coiled-coil domain - - - 0.0000000000000000785 85.0
DYD3_k127_7188742_3 Protein of unknown function (DUF465) - - - 0.00000000000004605 73.0
DYD3_k127_7196315_0 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 383.0
DYD3_k127_7196315_1 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000001029 188.0
DYD3_k127_7196315_2 STAS domain K06378 - - 0.00000000000000005493 85.0
DYD3_k127_7218687_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 4.941e-287 889.0
DYD3_k127_7224628_0 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 531.0
DYD3_k127_7224628_1 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001084 270.0
DYD3_k127_7224628_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000000000000000000008232 143.0
DYD3_k127_722635_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005584 301.0
DYD3_k127_722635_1 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004623 273.0
DYD3_k127_722635_2 Carbon monoxide dehydrogenase subunit G (CoxG) K09386 - - 0.0000000000000000000000000000000000000000000000000000000000004357 216.0
DYD3_k127_722635_3 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000000000000000000001065 152.0
DYD3_k127_722635_4 protein possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000009671 151.0
DYD3_k127_722635_5 Cold shock protein domain K03704 - - 0.0000000000000000000000000000000000007685 146.0
DYD3_k127_7231764_0 DNA packaging protein gp2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 559.0
DYD3_k127_7231764_1 Tfp pilus assembly protein FimV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006602 587.0
DYD3_k127_7231764_10 Acyl-transferase - - - 0.000000000000000000000000000000000000008381 160.0
DYD3_k127_7231764_11 - - - - 0.000000000000000000000000000000002292 137.0
DYD3_k127_7231764_12 PDDEXK-like domain of unknown function (DUF3799) - - - 0.00000000000000000000000000000002762 140.0
DYD3_k127_7231764_13 - - - - 0.00000000000000000000000000000004579 136.0
DYD3_k127_7231764_14 Peptidase S24-like - - - 0.000000000000000000000000000001829 132.0
DYD3_k127_7231764_15 Glycosyl hydrolase 108 K08309 - - 0.00000000000000000000000009147 123.0
DYD3_k127_7231764_16 - - - - 0.000000000000000000002142 98.0
DYD3_k127_7231764_17 - - - - 0.0000000000000000007895 88.0
DYD3_k127_7231764_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 398.0
DYD3_k127_7231764_21 Belongs to the N(4) N(6)-methyltransferase family - - - 0.00000000000002491 74.0
DYD3_k127_7231764_22 - - - - 0.0000000004651 63.0
DYD3_k127_7231764_23 - - - - 0.000000009901 67.0
DYD3_k127_7231764_24 - - - - 0.00000002049 64.0
DYD3_k127_7231764_26 - - - - 0.00001696 58.0
DYD3_k127_7231764_27 - - - - 0.0001288 50.0
DYD3_k127_7231764_29 Domain of unknown function (DUF3846) - - - 0.0006047 49.0
DYD3_k127_7231764_3 Belongs to the N(4) N(6)-methyltransferase family K00571 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006652 357.0
DYD3_k127_7231764_4 Bacteriophage head to tail connecting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007462 348.0
DYD3_k127_7231764_5 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007384 270.0
DYD3_k127_7231764_6 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000002475 203.0
DYD3_k127_7231764_7 peptidase M15 K17733 - - 0.000000000000000000000000000000000000000000000004954 175.0
DYD3_k127_7231764_8 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000000000000000000000001084 190.0
DYD3_k127_7231764_9 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - 0.00000000000000000000000000000000000000005036 167.0
DYD3_k127_728951_0 Transglycosylase SLT domain K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 504.0
DYD3_k127_728951_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 404.0
DYD3_k127_728951_2 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000002443 127.0
DYD3_k127_728951_3 Sel1-like repeats. K07126 - - 0.000000000000000002143 89.0
DYD3_k127_728951_4 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000001137 65.0
DYD3_k127_735314_0 flavoprotein involved in K transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 399.0
DYD3_k127_735314_1 Belongs to the Dps family K04047 - - 0.00000000000000000000000000000000000000000000000000000000001365 224.0
DYD3_k127_735314_2 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000002361 194.0
DYD3_k127_737886_0 NMT1/THI5 like K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 341.0
DYD3_k127_737886_1 Protein of unknown function (DUF1214) - - - 0.0000000000000000000000000000000000000000000001528 171.0
DYD3_k127_737886_2 Protein of unknown function (DUF1254) - - - 0.0000000000000000000000000000000002682 142.0
DYD3_k127_741986_0 Flagellar hook protein FlgE K02390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005562 335.0
DYD3_k127_741986_1 Flagellar basal body rod FlgEFG protein C-terminal K02396 - - 0.000000000000000000000000000000000000000000000000000000007739 211.0
DYD3_k127_741986_2 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00000000000000000000000000000000000000000001655 169.0
DYD3_k127_741986_3 Flagellar hook-length control protein FliK K10565 - - 0.000000000000000001652 100.0
DYD3_k127_748293_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 429.0
DYD3_k127_748293_1 Putative zinc- or iron-chelating domain - - - 0.00000000000000000000134 105.0
DYD3_k127_748293_2 Zinc-finger domain - - - 0.00000000000000004417 84.0
DYD3_k127_75625_0 Membrane - - - 0.000000000000000004172 93.0
DYD3_k127_75625_1 Tetratricopeptide repeat - - - 0.0000000000002128 83.0
DYD3_k127_756259_0 coenzyme F420-1:gamma-L-glutamate ligase activity K09019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003795 286.0
DYD3_k127_756259_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000003143 197.0
DYD3_k127_756259_2 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000000000000000001052 169.0
DYD3_k127_756259_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000004311 130.0
DYD3_k127_756259_4 MarR family - - - 0.000000000000000000000000009132 117.0
DYD3_k127_767189_0 Exonuclease VII, large subunit K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 499.0
DYD3_k127_767189_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 287.0
DYD3_k127_767189_2 COG1560 Lauroyl myristoyl acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000005967 265.0
DYD3_k127_767189_3 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000005504 206.0
DYD3_k127_767189_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000001849 132.0
DYD3_k127_767189_5 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.000000000000000000000001212 106.0
DYD3_k127_767189_6 Uncharacterized protein conserved in bacteria (DUF2093) - - - 0.000000000000000000000433 98.0
DYD3_k127_767189_7 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH K07746 GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0046983,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0065003,GO:0071840 - 0.00000000000000000000052 111.0
DYD3_k127_770048_0 Winged helix DNA-binding domain K09927 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 485.0
DYD3_k127_770048_1 PFAM Kelch - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000524 332.0
DYD3_k127_770048_2 - - - - 0.000000000000000000000000000000000001591 143.0
DYD3_k127_770048_3 - - - - 0.00000009989 53.0
DYD3_k127_801269_0 Activator of Hsp90 ATPase - - - 0.000000000000000000000000000000000000000000000000000000003301 210.0
DYD3_k127_801269_1 Bacterial regulatory protein, arsR family - - - 0.00000000000000000000000000000000000000000000000005952 180.0
DYD3_k127_801269_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000008655 183.0
DYD3_k127_801269_3 polyketide cyclase - - - 0.0006317 43.0
DYD3_k127_803074_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007149 336.0
DYD3_k127_803074_1 AFG1 family ATPase K06916 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030163,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0035694,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071840,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000131 218.0
DYD3_k127_803074_2 - - - - 0.000000000001169 80.0
DYD3_k127_80781_0 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 376.0
DYD3_k127_80781_1 Thioesterase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003755 263.0
DYD3_k127_80781_2 Protein of unknown function (DUF3297) - - - 0.000000000000000000000000000000000003329 138.0
DYD3_k127_812833_0 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 350.0
DYD3_k127_812833_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 299.0
DYD3_k127_812833_2 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000001755 164.0
DYD3_k127_812833_3 CVNH domain - - - 0.00000000000000000000000000000000007923 145.0
DYD3_k127_812833_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935,K02169 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.197,6.3.3.3 0.0000000003295 63.0
DYD3_k127_812833_5 Beta/gamma crystallins - - - 0.000000005276 67.0
DYD3_k127_814195_0 peptidase S9A prolyl oligopeptidase domain protein beta-propeller K01322 - 3.4.21.26 5.446e-261 819.0
DYD3_k127_814195_1 Glycine cleavage T-protein C-terminal barrel domain - - - 0.000000000000000000000000000000000004449 138.0
DYD3_k127_819591_0 taurine catabolism dioxygenase K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 424.0
DYD3_k127_819591_1 Histidyl-tRNA synthetase K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 306.0
DYD3_k127_819591_2 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001852 295.0
DYD3_k127_82278_0 MlaA lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009887 265.0
DYD3_k127_82278_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 0.000000000000000000000000000001491 120.0
DYD3_k127_82278_2 PFAM toluene tolerance family protein K07323 - - 0.00000000000000000000000000007355 123.0
DYD3_k127_843140_0 Patatin phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003041 434.0
DYD3_k127_843140_1 A circularly permuted ATPgrasp - - - 0.000000000000000000000000000000000000000000000000000000000002389 214.0
DYD3_k127_843140_2 - - - - 0.0000000000000000000000000000000000002568 144.0
DYD3_k127_845221_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000925 541.0
DYD3_k127_845221_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000001478 220.0
DYD3_k127_845221_2 Phospholipase, patatin family K07001 - - 0.0000000000000000000000000008812 119.0
DYD3_k127_86436_0 MaoC like domain K14449 GO:0003674,GO:0003824,GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0045733,GO:0046395,GO:0071704,GO:0072329,GO:1901575 4.2.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 446.0
DYD3_k127_86436_1 HpcH/HpaI aldolase/citrate lyase family K01644,K14451 - 3.1.2.30,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 362.0
DYD3_k127_86436_2 YCII-related domain - - - 0.0000000000000000003843 94.0
DYD3_k127_86436_3 Tetratricopeptide repeat - - - 0.0000000002906 70.0
DYD3_k127_86436_4 Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha K16365 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010604,GO:0010605,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019941,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031331,GO:0031333,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032435,GO:0032436,GO:0032459,GO:0032460,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0042176,GO:0042177,GO:0042221,GO:0042802,GO:0042803,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043621,GO:0043632,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045048,GO:0045184,GO:0045732,GO:0045861,GO:0045862,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051205,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051603,GO:0051641,GO:0051716,GO:0060255,GO:0061024,GO:0061136,GO:0065007,GO:0070727,GO:0071704,GO:0071816,GO:0071840,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901799,GO:1901800,GO:1903050,GO:1903051,GO:1903052,GO:1903069,GO:1903070,GO:1903071,GO:1903332,GO:1903334,GO:1903362,GO:1903363,GO:1903364,GO:1903573,GO:1903644,GO:1903646,GO:1904288,GO:1904292,GO:1904293,GO:1904294,GO:1905897,GO:1905898,GO:2000058,GO:2000059,GO:2000060 - 0.0000001072 62.0
DYD3_k127_86436_5 cellulase activity - - - 0.0000004289 61.0
DYD3_k127_870307_0 Uncharacterised protein conserved in bacteria (DUF2336) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 357.0
DYD3_k127_870307_1 Protein of unknown function (DUF1036) - - - 0.0000000000000000000000000000002196 130.0
DYD3_k127_870307_2 diguanylate cyclase - - - 0.00000000263 64.0
DYD3_k127_87663_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 GO:0008150,GO:0008152,GO:0055114 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 474.0
DYD3_k127_87663_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000415 107.0
DYD3_k127_8878_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 9.195e-210 663.0
DYD3_k127_8878_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 505.0
DYD3_k127_905950_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 556.0
DYD3_k127_905950_1 transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 358.0
DYD3_k127_905950_2 Belongs to the amidase family K01426 - 3.5.1.4 0.000000000000001451 79.0
DYD3_k127_916080_0 Alkyl sulfatase dimerisation - - - 0.000000000000000000000000000000000001954 143.0
DYD3_k127_916080_1 YjbR - - - 0.00000000000000000000001696 104.0
DYD3_k127_916080_2 YjbR - - - 0.000000000000000002134 95.0
DYD3_k127_916080_3 Pyroglutamyl peptidase K01304 - 3.4.19.3 0.0000000000001532 76.0
DYD3_k127_919315_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000006419 197.0
DYD3_k127_919315_1 MerR HTH family regulatory protein - - - 0.000000000000000000000000000000000000001483 153.0
DYD3_k127_919315_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000009171 145.0
DYD3_k127_919315_3 Peptidase family M23 - - - 0.0000000000000000000000000000002385 128.0
DYD3_k127_919315_4 - - - - 0.00000000000000005566 94.0
DYD3_k127_930389_0 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003512 256.0
DYD3_k127_930389_1 Domain of unknown function (DUF1963) - - - 0.0000000000000000000000000000000000000000000000000000001677 207.0
DYD3_k127_958952_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 2.748e-216 677.0
DYD3_k127_958952_1 - - - - 0.00006222 50.0
DYD3_k127_961343_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822,K00833 - 2.6.1.18,2.6.1.62 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006158 570.0
DYD3_k127_961343_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 559.0
DYD3_k127_961343_2 AsmA family K07289 - - 0.0000000000000000000000000000000000000002074 158.0
DYD3_k127_972529_0 Acetyl-CoA dehydrogenase C-terminal like K00248,K00249,K20035 - 1.3.8.1,1.3.8.7 9.853e-224 708.0
DYD3_k127_972529_1 Prokaryotic cytochrome b561 K12262 - - 0.00000000000000000000000000000000000000000000000000003427 192.0
DYD3_k127_972529_2 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000002404 155.0
DYD3_k127_972529_3 YceI-like domain - - - 0.00000000000000000000000000000000008993 141.0
DYD3_k127_975746_0 Dehydrogenase K00101 - 1.1.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 439.0
DYD3_k127_975746_1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009381 422.0
DYD3_k127_979314_0 Major facilitator superfamily K03446 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 561.0
DYD3_k127_979314_1 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000004892 138.0
DYD3_k127_995867_0 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 396.0
DYD3_k127_995867_1 mandelate racemase muconate lactonizing K19802 - 5.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 356.0
DYD3_k127_995867_2 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000009523 177.0