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Overview

ID MAG00956
Name DYD3_bin.26
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Bacteroidota
Class Bacteroidia
Order Chitinophagales
Family Saprospiraceae
Genus Opimibacter
Species
Assembly information
Completeness (%) 59.35
Contamination (%) 1.05
GC content (%) 44.0
N50 (bp) 5,279
Genome size (bp) 1,922,474

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1698

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_101472_0 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000001316 276.0
DYD3_k127_101472_1 Thioredoxin-like domain K05838 - - 0.0000000000000000000000000000000000000000000000000003049 193.0
DYD3_k127_101472_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000001477 176.0
DYD3_k127_1028527_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 374.0
DYD3_k127_1028527_1 ArgK protein K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003979 269.0
DYD3_k127_1028527_2 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.000000000000001326 88.0
DYD3_k127_1045158_0 Fungalysin metallopeptidase (M36) - - - 2.419e-238 774.0
DYD3_k127_1088375_0 Carbamoyl-phosphate synthase K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005828 538.0
DYD3_k127_1088375_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008373 498.0
DYD3_k127_1097972_0 Acylphosphatase K01512 - 3.6.1.7 0.000000000000001327 79.0
DYD3_k127_1097972_1 response to abiotic stimulus K01011,K06867 - 2.8.1.1,2.8.1.2 0.0000000000004414 78.0
DYD3_k127_1097972_2 BNR repeat-like domain - - - 0.0000000001549 74.0
DYD3_k127_1097972_3 Pkd domain containing protein - - - 0.00000001803 67.0
DYD3_k127_1106325_0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000341 284.0
DYD3_k127_1106325_1 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001825 269.0
DYD3_k127_1106325_2 Glycosyl transferase family 2 K12984 - - 0.000000000000000000000000000000000000000000000000000000004742 209.0
DYD3_k127_1106325_3 SMART Elongator protein 3 MiaB NifB K18707 - 2.8.4.5 0.000009161 49.0
DYD3_k127_110731_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000008124 250.0
DYD3_k127_110731_1 Dihydrodipicolinate reductase, N-terminus K21672 - 1.4.1.12,1.4.1.26 0.0000000000000000000000000004507 119.0
DYD3_k127_110731_3 Leucine-rich repeat (LRR) protein - - - 0.0004146 52.0
DYD3_k127_1126385_0 Tetratricopeptide repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 579.0
DYD3_k127_1126385_1 peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000003423 209.0
DYD3_k127_1126385_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000004429 145.0
DYD3_k127_1126385_3 Biotin lipoyl attachment domain-containing protein K01960 - 6.4.1.1 0.000000000000000000000000115 112.0
DYD3_k127_1126385_4 protein CHP03519, membrane, Bacteroidetes - - - 0.0000000000000000000000003989 106.0
DYD3_k127_1128469_0 COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - 0.0 1133.0
DYD3_k127_1128469_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 449.0
DYD3_k127_1128469_2 heme binding - - - 0.00000000000000000000000000000000000000000000000000576 188.0
DYD3_k127_1128469_3 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000008121 133.0
DYD3_k127_1135385_0 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006589 444.0
DYD3_k127_1135385_1 flavin reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 326.0
DYD3_k127_1135385_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000002626 236.0
DYD3_k127_1135385_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000006654 166.0
DYD3_k127_1135385_4 Domain of unknown function (DUF4369) - - - 0.0000000000000000000000000000000000004438 146.0
DYD3_k127_1135385_5 - - - - 0.000000000002172 72.0
DYD3_k127_1135385_6 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000004847 57.0
DYD3_k127_1169112_0 COGs COG1228 Imidazolonepropionase and related amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 539.0
DYD3_k127_1169112_1 Domain of unknown function (DUF1287) K09974 - - 0.00000000000000000000000000000000000000000000000000000002173 200.0
DYD3_k127_1169112_2 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009405,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016667,GO:0016684,GO:0019725,GO:0020012,GO:0030312,GO:0030682,GO:0042221,GO:0042592,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0051920,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071944,GO:0075136,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.000000003884 57.0
DYD3_k127_1229860_0 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 369.0
DYD3_k127_1229860_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 360.0
DYD3_k127_1229860_2 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 341.0
DYD3_k127_1229860_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000001923 199.0
DYD3_k127_1229860_4 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000005455 189.0
DYD3_k127_1237850_0 AsmA family - - - 0.000000000000000000000000000000000000000000000000000000000000001041 244.0
DYD3_k127_1237850_1 Belongs to the peptidase S8 family K11016 - - 0.00000000000000000000000000000000000000000000000000000001824 227.0
DYD3_k127_1237850_2 domain protein - - - 0.000000000000437 76.0
DYD3_k127_1238275_0 TonB-dependent receptor plug domain K02014 - - 1.109e-201 646.0
DYD3_k127_1238275_1 TIGRFAM N-terminal double-transmembrane domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 424.0
DYD3_k127_1238275_2 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000002471 250.0
DYD3_k127_1241122_0 DinB family - - - 0.00000000000000000000000000000000000001122 150.0
DYD3_k127_1241122_1 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000003823 145.0
DYD3_k127_1241122_2 Histidine kinase - - - 0.0000000000000000000000000000000001756 147.0
DYD3_k127_1241122_3 CHAT domain - - - 0.0000000000000000000000000000000004773 148.0
DYD3_k127_1241122_4 Histidine kinase - - - 0.00000000001191 76.0
DYD3_k127_1241122_5 YjbR - - - 0.00001929 46.0
DYD3_k127_1241122_6 Sulfotransferase domain - - - 0.00005477 56.0
DYD3_k127_1249606_0 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 2.447e-225 707.0
DYD3_k127_1249606_1 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 341.0
DYD3_k127_1249606_2 COG1024 Enoyl-CoA hydratase carnithine racemase K13766 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 303.0
DYD3_k127_1250025_0 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006208 310.0
DYD3_k127_1250025_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000001759 263.0
DYD3_k127_1250025_2 COG1331 Highly conserved protein containing a thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000003129 180.0
DYD3_k127_1250025_3 Protein of unknown function (DUF1573) - - - 0.0000000000000000000000000000004103 126.0
DYD3_k127_1265238_0 Domain of unknown function (DUF4331) - - - 3.858e-263 827.0
DYD3_k127_1265238_1 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 474.0
DYD3_k127_1265238_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 361.0
DYD3_k127_1265238_3 PIN domain - - - 0.00000000004919 64.0
DYD3_k127_12811_0 Lipid-binding putative hydrolase - - - 0.0000000000000000000000000000000000000005919 153.0
DYD3_k127_12811_1 cellulase activity - - - 0.00000000000000005975 92.0
DYD3_k127_12811_2 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.000000001223 70.0
DYD3_k127_12811_3 - - - - 0.0000004986 51.0
DYD3_k127_12811_4 ISXO2-like transposase domain - - - 0.0001 52.0
DYD3_k127_1286357_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 332.0
DYD3_k127_1286357_1 metallocarboxypeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 310.0
DYD3_k127_1286357_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000000000000002163 141.0
DYD3_k127_1304014_0 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 425.0
DYD3_k127_1304014_1 Pyridoxal-dependent decarboxylase K13745 - 4.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000005516 248.0
DYD3_k127_1304014_2 PFAM Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000001114 205.0
DYD3_k127_1304014_3 metallopeptidase activity - - - 0.00000000000000001406 97.0
DYD3_k127_1313350_0 with chaperone activity ATP-binding subunit K03696 - - 0.0 1273.0
DYD3_k127_1313350_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008011 604.0
DYD3_k127_1313350_10 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000000000000009907 173.0
DYD3_k127_1313350_11 Protein of unknown function (DUF2795) - - - 0.00000000000000000000000000000000000000649 145.0
DYD3_k127_1313350_12 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000002603 98.0
DYD3_k127_1313350_13 Bacterial SH3 domain homologues - - - 0.00002388 49.0
DYD3_k127_1313350_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 558.0
DYD3_k127_1313350_3 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 444.0
DYD3_k127_1313350_4 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005876 279.0
DYD3_k127_1313350_5 Protein of unknown function (DUF2911) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003493 267.0
DYD3_k127_1313350_6 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000003263 255.0
DYD3_k127_1313350_7 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000000002095 236.0
DYD3_k127_1313350_8 LmbE family - - - 0.000000000000000000000000000000000000000000000000000000000000002437 220.0
DYD3_k127_1313350_9 transporter antisigma-factor antagonist STAS - - - 0.000000000000000000000000000000000000000000000000003018 184.0
DYD3_k127_1327924_0 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 391.0
DYD3_k127_1327924_1 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003026 370.0
DYD3_k127_1327924_2 Tetratricopeptide repeat - - - 0.0000000114 63.0
DYD3_k127_1358595_0 - - - - 0.000000000000000000000000000000000000000000000000000002884 203.0
DYD3_k127_1358595_1 Domain of unknown function DUF11 - - - 0.00000000000000000613 98.0
DYD3_k127_1358595_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.000000000000000008997 87.0
DYD3_k127_1358595_4 Redoxin - - - 0.000003918 59.0
DYD3_k127_1358595_5 Redoxin - - - 0.000009034 58.0
DYD3_k127_1358595_6 Redoxin - - - 0.00003515 55.0
DYD3_k127_1367092_0 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 598.0
DYD3_k127_1367092_1 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 338.0
DYD3_k127_1367092_2 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009226 257.0
DYD3_k127_1367092_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000001852 176.0
DYD3_k127_1367092_4 PFAM PspC domain - - - 0.0000000000000002557 82.0
DYD3_k127_1395099_0 COGs COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase - - - 4.445e-290 897.0
DYD3_k127_1395099_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 3.29e-207 651.0
DYD3_k127_141281_0 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006833 483.0
DYD3_k127_141281_1 ATP-grasp domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 318.0
DYD3_k127_1450828_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008753 475.0
DYD3_k127_1450828_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 398.0
DYD3_k127_1450828_2 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003443 273.0
DYD3_k127_1455361_0 Zinc metalloprotease (Elastase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 614.0
DYD3_k127_1455361_1 Serine threonine protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 411.0
DYD3_k127_1466599_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 558.0
DYD3_k127_1466599_1 metallopeptidase activity K13735 - - 0.0000000000000000000000000000000000000000000000000000000000003056 225.0
DYD3_k127_1466599_2 PFAM Peptidase M22, glycoprotease K14742 - - 0.0000000000000000000000000000000000000001853 158.0
DYD3_k127_1478231_0 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 323.0
DYD3_k127_1478231_1 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001773 276.0
DYD3_k127_1478231_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000007048 270.0
DYD3_k127_1478231_3 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000000000005139 177.0
DYD3_k127_1478231_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000002266 173.0
DYD3_k127_1499339_0 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008345 596.0
DYD3_k127_1499339_1 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000369 184.0
DYD3_k127_1506941_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000005504 82.0
DYD3_k127_1506941_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000139 83.0
DYD3_k127_1506941_2 Cna B domain protein - - - 0.000003852 58.0
DYD3_k127_1506941_3 Domain of unknown function (DUF5122) beta-propeller - - - 0.000006807 57.0
DYD3_k127_1508122_0 saccharopine dehydrogenase activity K00290 - 1.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000001117 237.0
DYD3_k127_1508122_1 IMP dehydrogenase activity K04767,K07182 - - 0.0000000000000000000000001001 111.0
DYD3_k127_1508122_2 VTC domain - - - 0.000000000001081 73.0
DYD3_k127_1511545_0 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009146 404.0
DYD3_k127_1511545_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000003599 236.0
DYD3_k127_1511545_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000004717 205.0
DYD3_k127_1511545_3 HIT family hydrolase K02503 - - 0.000000000000000000000000000000000000000000000000398 178.0
DYD3_k127_1524527_0 Protein of unknown function (DUF3810) - - - 0.0000000000000000000000000000000000000000000000000000000000006136 225.0
DYD3_k127_1524527_1 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000001676 169.0
DYD3_k127_1524527_2 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.000000000000000000000000000000000000000000001898 173.0
DYD3_k127_1524527_3 photosystem II stabilization K02237 - - 0.00000000004992 67.0
DYD3_k127_1524527_4 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000003954 53.0
DYD3_k127_1524527_5 BRO family, N-terminal domain - - - 0.0002103 45.0
DYD3_k127_1537147_0 TIGRFAM amino acid peptide transporter (Peptide H symporter), bacterial K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008463 401.0
DYD3_k127_1537147_1 phenazine biosynthesis protein PhzF - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009569 346.0
DYD3_k127_1555227_0 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 564.0
DYD3_k127_1555227_1 malonyl coa-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 321.0
DYD3_k127_1555227_2 PFAM GTP cyclohydrolase I Nitrile oxidoreductase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006989 297.0
DYD3_k127_1555227_3 acr, cog1678 K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000008771 229.0
DYD3_k127_1555227_4 Cytochrome c oxidase subunit K00404 - 1.9.3.1 0.000000000000001444 77.0
DYD3_k127_1555682_0 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 1.738e-232 745.0
DYD3_k127_1555682_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 470.0
DYD3_k127_1555682_2 amidohydrolase K20810 - 3.5.4.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 458.0
DYD3_k127_1555682_3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 415.0
DYD3_k127_1555682_4 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000002192 248.0
DYD3_k127_1555682_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000002708 120.0
DYD3_k127_1555682_6 GSCFA family - - - 0.00000000000000000000000001748 113.0
DYD3_k127_1558479_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004511 541.0
DYD3_k127_1561257_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 325.0
DYD3_k127_1561257_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002919 275.0
DYD3_k127_1561257_2 Protein of unknown function (DUF3109) - - - 0.000000000000001424 77.0
DYD3_k127_1581049_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 283.0
DYD3_k127_1581049_1 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001172 263.0
DYD3_k127_1581049_2 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000284 253.0
DYD3_k127_1581049_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000004399 192.0
DYD3_k127_1581049_4 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000005088 168.0
DYD3_k127_1581049_5 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000007861 149.0
DYD3_k127_1581049_6 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000007638 136.0
DYD3_k127_1581049_7 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000001396 85.0
DYD3_k127_1581049_8 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000004509 76.0
DYD3_k127_1582074_0 hemolysin activation secretion protein - - - 2.273e-229 742.0
DYD3_k127_1582074_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 493.0
DYD3_k127_1582074_2 Belongs to the SOS response-associated peptidase family - - - 0.00000000002376 66.0
DYD3_k127_1586884_0 Outer membrane protein beta-barrel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 597.0
DYD3_k127_1586884_1 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008711 360.0
DYD3_k127_1586884_2 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006308 301.0
DYD3_k127_1586884_3 Lipopolysaccharide-assembly, LptC-related - - - 0.000000000000000000000000005266 117.0
DYD3_k127_1594804_0 Glycosyl hydrolase family 65, N-terminal domain - - - 1.408e-241 754.0
DYD3_k127_1594804_1 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 494.0
DYD3_k127_1594804_2 Trehalase K01194 - 3.2.1.28 0.0002061 44.0
DYD3_k127_1609920_0 Glycosyl hydrolase family 32 K03332 - 3.2.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 600.0
DYD3_k127_1609920_1 Iron-storage protein K02217 - 1.16.3.2 0.0000000000000000000000000000000000000000000000000000000000008776 215.0
DYD3_k127_1609920_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000005789 127.0
DYD3_k127_1609920_3 AraC family - - - 0.0000000000000000000000000025 124.0
DYD3_k127_1609920_4 Paraquat-inducible protein A - - - 0.000000002929 63.0
DYD3_k127_1655289_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 552.0
DYD3_k127_1655289_1 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 427.0
DYD3_k127_1655289_2 Thioredoxin - - - 0.00000000000000000000000000000000000000000000005285 175.0
DYD3_k127_1655289_3 Outer membrane protein Omp28 - - - 0.0000000003016 63.0
DYD3_k127_166356_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 330.0
DYD3_k127_166356_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 310.0
DYD3_k127_166356_2 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006835 286.0
DYD3_k127_166356_3 methyltransferase K00559 - 2.1.1.41 0.000000000000000000000000000000000000000000000000000000005633 209.0
DYD3_k127_166356_4 Calcineurin-like phosphoesterase - - - 0.00000000000000000006341 98.0
DYD3_k127_166356_5 polysaccharide biosynthetic process - - - 0.0005763 44.0
DYD3_k127_1666963_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 507.0
DYD3_k127_1666963_1 Ferredoxin--NADP reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 417.0
DYD3_k127_1666963_2 Domain of unknown function (DUF4252) - - - 0.000000000000000000000000000000000000001067 153.0
DYD3_k127_1666963_3 Pfam Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000001093 139.0
DYD3_k127_1666963_4 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000106 136.0
DYD3_k127_1666963_5 Psort location Cytoplasmic, score 8.96 - - - 0.000001248 57.0
DYD3_k127_1673516_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 585.0
DYD3_k127_1673516_1 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000006536 199.0
DYD3_k127_1673516_2 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000003059 193.0
DYD3_k127_1673516_3 signal peptide peptidase SppA, 67K type K04773 - - 0.000000000000000000000000000003459 125.0
DYD3_k127_1673516_4 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000000622 63.0
DYD3_k127_1721363_0 PA14 K08738 - - 0.0 1114.0
DYD3_k127_1721363_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 611.0
DYD3_k127_1721363_2 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 399.0
DYD3_k127_1721363_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 375.0
DYD3_k127_1721363_4 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000218 221.0
DYD3_k127_1751071_0 addiction module antidote protein HigA K18831,K21498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003215 278.0
DYD3_k127_1751071_1 histidine kinase-, DNA gyrase B - - - 0.00000000000000000000000000000000000000000000000000000000000000004577 229.0
DYD3_k127_1751071_2 Hep Hag repeat protein - - - 0.0000000000000000005736 89.0
DYD3_k127_1751071_3 Thiopurine S-methyltransferase (TPMT) - - - 0.0000000000000000007902 87.0
DYD3_k127_1751071_4 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.00000000000000001109 86.0
DYD3_k127_1769992_0 ATPase (AAA K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 554.0
DYD3_k127_1769992_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 432.0
DYD3_k127_1769992_2 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 331.0
DYD3_k127_1769992_3 SprB repeat - - - 0.0000000000000000000000000000000000000000002655 181.0
DYD3_k127_1795847_0 Sigma-54 interaction domain K03405 - 6.6.1.1 1.404e-195 618.0
DYD3_k127_1795847_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 610.0
DYD3_k127_1795847_2 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000003748 102.0
DYD3_k127_1810477_0 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 5.418e-206 650.0
DYD3_k127_1810477_1 PFAM PSP1 C-terminal conserved region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 456.0
DYD3_k127_1810477_2 COG2812 DNA polymerase III, gamma tau subunits K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000004211 216.0
DYD3_k127_1810477_3 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000008811 174.0
DYD3_k127_1810477_4 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000005537 103.0
DYD3_k127_1812417_0 Conserved repeat domain - - - 1.094e-222 727.0
DYD3_k127_1830662_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 570.0
DYD3_k127_1830662_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008702 443.0
DYD3_k127_1830662_2 Acyl-CoA reductase (LuxC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 306.0
DYD3_k127_1830662_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 297.0
DYD3_k127_1871860_0 PFAM Peptidase M56, BlaR1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000116 248.0
DYD3_k127_1871860_1 Protein of unknown function, DUF481 - - - 0.00000000000000000000000000000000000000000000000000003966 196.0
DYD3_k127_1871860_2 Transcriptional repressor, CopY family - - - 0.000000000000000000000000000000000000008155 149.0
DYD3_k127_1903970_0 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004122 529.0
DYD3_k127_1903970_1 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 396.0
DYD3_k127_1903970_2 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.0000000000000000000000000000000000000000000000000000000003908 211.0
DYD3_k127_1903970_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000005649 119.0
DYD3_k127_1914389_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 2.916e-220 692.0
DYD3_k127_1914389_1 ATPase (AAA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 506.0
DYD3_k127_1914389_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 298.0
DYD3_k127_1914389_3 Lipopolysaccharide-assembly - - - 0.0000000000000000000000000000000000001269 148.0
DYD3_k127_1917148_0 membrane protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 363.0
DYD3_k127_1917148_1 - - - - 0.000000000000000000000000000000000000000000000000000004684 195.0
DYD3_k127_1917148_2 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K07025 - - 0.0000000000000000000000000000000000000000000001221 176.0
DYD3_k127_1917148_3 D-alanyl-D-alanine carboxypeptidase - - - 0.00000000000000000000000000000000000000000001157 172.0
DYD3_k127_1917148_4 DoxX K15977 - - 0.0000000000000000000000000000001218 130.0
DYD3_k127_1917148_5 - - - - 0.000000000003369 68.0
DYD3_k127_1962995_0 IMG reference gene - - - 0.00000000000000000000000000000000000000000002567 182.0
DYD3_k127_1962995_1 SPTR CHU large protein - - - 0.00000000000000000000000000000000000000000007681 173.0
DYD3_k127_1967653_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 400.0
DYD3_k127_1967653_1 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 346.0
DYD3_k127_197747_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000003124 112.0
DYD3_k127_197747_3 Helix-turn-helix XRE-family like proteins - - - 0.00000000007094 67.0
DYD3_k127_1990003_0 IMG reference gene - - - 0.0000000000000000000000000000000000000000000000000001701 213.0
DYD3_k127_1990003_1 PFAM PKD domain - - - 0.000000000000000000000000000000000000000000000003023 199.0
DYD3_k127_1993227_0 Aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 1.297e-232 725.0
DYD3_k127_1993227_1 PFAM Rhomboid family - - - 0.000000000000000000000000000000000000000000004011 170.0
DYD3_k127_1993227_2 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000224 134.0
DYD3_k127_203049_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 359.0
DYD3_k127_203049_1 PFAM Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 308.0
DYD3_k127_2037519_0 conserved protein UCP016719 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 424.0
DYD3_k127_2037519_1 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009236 376.0
DYD3_k127_2037519_2 Psort location OuterMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001642 256.0
DYD3_k127_2047867_0 amino acid peptide transporter K03305 - - 3.374e-211 666.0
DYD3_k127_2047867_1 M42 glutamyl aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 479.0
DYD3_k127_2047867_2 POT family K03305 - - 0.000000000000000000000001384 105.0
DYD3_k127_2094869_0 Thiol oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 582.0
DYD3_k127_2094869_1 Iron dependent repressor, metal binding and dimerisation domain K03709 - - 0.0000000000000000000000000000000000000000000000000000000000001255 218.0
DYD3_k127_212800_0 Belongs to the aldehyde dehydrogenase family K10217 - 1.2.1.32,1.2.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 611.0
DYD3_k127_212800_1 Metal-dependent hydrolase K03392 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006913 452.0
DYD3_k127_212800_2 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 412.0
DYD3_k127_212800_3 NAD(P)H-binding K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 291.0
DYD3_k127_212800_4 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000007435 213.0
DYD3_k127_212800_5 Endoribonuclease L-PSP K15067 - 3.5.99.5 0.00000000000000000000000000000000000000006105 155.0
DYD3_k127_2139750_0 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 611.0
DYD3_k127_2139750_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 310.0
DYD3_k127_2139750_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.000000000000000000000000000000000000002628 151.0
DYD3_k127_2139750_3 - - - - 0.00000000000000000000000000000000008228 146.0
DYD3_k127_2139750_4 PFAM RNP-1 like RNA-binding protein - - - 0.000000000000000001146 91.0
DYD3_k127_2141199_0 FAD dependent oxidoreductase K15736 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 445.0
DYD3_k127_2141199_1 PFAM Scaffold protein Nfu NifU N terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 310.0
DYD3_k127_2141199_2 ABC transporter - - - 0.000000000000000000001049 94.0
DYD3_k127_2141199_3 ribosomal protein - - - 0.000000000000000001945 94.0
DYD3_k127_2157416_0 Immunoglobulin like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 353.0
DYD3_k127_2157416_1 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006951 252.0
DYD3_k127_2157416_2 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000000000000000000000000001507 222.0
DYD3_k127_2170580_0 Oxidoreductase - - - 4.753e-251 785.0
DYD3_k127_2170580_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 362.0
DYD3_k127_2170580_2 Hydroxypyruvate isomerase K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 332.0
DYD3_k127_2170580_3 S1 P1 Nuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000003127 233.0
DYD3_k127_2170580_4 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.000000000000000000000000000000000000000001324 160.0
DYD3_k127_2170580_5 Gluconate 2-dehydrogenase subunit 3 - - - 0.000000000000000000000000000000000007802 143.0
DYD3_k127_2170580_6 helix_turn_helix ASNC type K03718 - - 0.00000000000000000000000000915 116.0
DYD3_k127_2184955_0 Domain of unknown function (DUF5103) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 318.0
DYD3_k127_2184955_1 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000001653 169.0
DYD3_k127_2184955_2 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000001167 127.0
DYD3_k127_2189083_0 AcrB/AcrD/AcrF family K07239 - - 0.0 1411.0
DYD3_k127_2189083_1 Biotin-lipoyl like K15727 - - 0.0000000000000000000000000000000000000005171 158.0
DYD3_k127_2189083_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000002903 137.0
DYD3_k127_2238267_0 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008769 480.0
DYD3_k127_2238267_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 435.0
DYD3_k127_2238267_2 - - - - 0.0000000000009782 75.0
DYD3_k127_2238267_3 - - - - 0.000000000004516 73.0
DYD3_k127_2238267_4 MerR HTH family regulatory protein - - - 0.00001094 48.0
DYD3_k127_2257939_0 COG1055 Na H antiporter NhaD and related arsenite - - - 1.592e-194 615.0
DYD3_k127_2257939_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 560.0
DYD3_k127_2257939_10 - - - - 0.00000000000007844 74.0
DYD3_k127_2257939_11 - - - - 0.000000000006823 71.0
DYD3_k127_2257939_2 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K00346 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 492.0
DYD3_k127_2257939_3 NQR2, RnfD, RnfE family K00347 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004308 478.0
DYD3_k127_2257939_4 Releases the N-terminal proline from various substrates K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 308.0
DYD3_k127_2257939_5 Rnf-Nqr subunit, membrane protein K00349 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 297.0
DYD3_k127_2257939_6 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 297.0
DYD3_k127_2257939_7 Rnf-Nqr subunit, membrane protein K00350 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008668 270.0
DYD3_k127_2257939_8 FMN_bind K00348 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000004955 210.0
DYD3_k127_2257939_9 signal transduction protein with CBS domains - - - 0.0000000000000000000000000000000000000000000000000002937 188.0
DYD3_k127_2279244_0 alpha-2-macroglobulin domain protein K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007349 477.0
DYD3_k127_231762_0 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 539.0
DYD3_k127_231762_1 PDZ DHR GLGF domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 312.0
DYD3_k127_231762_2 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000009222 137.0
DYD3_k127_231762_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000002948 125.0
DYD3_k127_2354410_0 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 602.0
DYD3_k127_2354410_1 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 438.0
DYD3_k127_2354410_2 Belongs to the universal stress protein A family - - - 0.0000001832 57.0
DYD3_k127_2362265_0 amino acid K03294 - - 3.55e-239 747.0
DYD3_k127_2362265_1 alanine symporter K03310 - - 3.48e-206 654.0
DYD3_k127_2362265_2 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009151 262.0
DYD3_k127_241660_0 Cystathionine beta-synthase K01697 - 4.2.1.22 2.497e-221 694.0
DYD3_k127_241660_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000005355 229.0
DYD3_k127_241660_2 cytidine and deoxycytidylate deaminase K01489 - 3.5.4.5 0.000000000000000000000000000000000134 138.0
DYD3_k127_241660_3 PFAM Peptidoglycan-binding lysin domain - - - 0.000000000000000000000292 107.0
DYD3_k127_241660_4 Type IX secretion system membrane protein PorP/SprF - - - 0.00000000000447 67.0
DYD3_k127_2428256_0 Peptidase S9, prolyl oligopeptidase, catalytic domain K01354 - 3.4.21.83 2.324e-227 710.0
DYD3_k127_2428256_1 Belongs to the peptidase S8 family K13276 GO:0005575,GO:0005576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 574.0
DYD3_k127_2428256_2 PFAM TonB-dependent Receptor K16091 - - 0.00000000000000000000000000000000000000000000000000000000000002071 225.0
DYD3_k127_243245_0 Sulfatase - - - 8.334e-197 621.0
DYD3_k127_243245_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007618 562.0
DYD3_k127_243245_2 Thermophilic metalloprotease (M29) K19689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007888 441.0
DYD3_k127_2434631_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 336.0
DYD3_k127_2434631_1 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000009073 209.0
DYD3_k127_2434631_2 metallopeptidase activity K01179,K03768,K08738 - 3.2.1.4,5.2.1.8 0.000000000000000000000000000000001822 145.0
DYD3_k127_2434631_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.0000000000000000000000000001649 117.0
DYD3_k127_2434631_4 ketosteroid isomerase - - - 0.0006945 49.0
DYD3_k127_2436655_0 oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000003229 271.0
DYD3_k127_2436655_1 Protein of unknown function (DUF420) - - - 0.0000000000000000000000000000000000000000002035 164.0
DYD3_k127_2436655_3 - - - - 0.00000000000000000000001383 102.0
DYD3_k127_2436655_4 Outer membrane protein beta-barrel domain - - - 0.00000000000000133 85.0
DYD3_k127_2436655_5 small membrane protein - - - 0.00000000000000881 77.0
DYD3_k127_2441936_0 glutamate decarboxylase activity K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 428.0
DYD3_k127_2441936_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008703 298.0
DYD3_k127_2441936_2 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001456 266.0
DYD3_k127_2452853_0 DNA polymerase K02347 - - 0.00000000000000000000000000000000000000000000000000001228 203.0
DYD3_k127_2452853_1 - - - - 0.0000000000000000000000000000004955 130.0
DYD3_k127_2460245_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 9.104e-272 859.0
DYD3_k127_2460245_1 glucosamine N-acyltransferase K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 288.0
DYD3_k127_2474371_0 of the AAA class - - - 3.233e-254 795.0
DYD3_k127_2474371_1 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000004874 139.0
DYD3_k127_2485107_0 glycosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 606.0
DYD3_k127_2485107_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 579.0
DYD3_k127_2485107_2 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000005392 205.0
DYD3_k127_2499330_0 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 522.0
DYD3_k127_2499330_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431,K12251 - 3.5.1.53,3.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 493.0
DYD3_k127_2499330_2 Domain of unknown function (DUF4143) K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 349.0
DYD3_k127_2499330_3 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000146 62.0
DYD3_k127_2499330_4 Trypsin - - - 0.00000001017 67.0
DYD3_k127_2623786_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007238 488.0
DYD3_k127_2623786_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000002385 243.0
DYD3_k127_2623786_2 LVIVD repeat - - - 0.000000000000000000000000000000000000000000000000003106 191.0
DYD3_k127_2675253_0 TonB-linked outer membrane protein, SusC RagA family - - - 2.374e-305 959.0
DYD3_k127_2675253_1 ASPIC and UnbV - - - 2.462e-227 713.0
DYD3_k127_2675253_2 Pfam:SusD K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 608.0
DYD3_k127_2713220_0 Gliding motility protein, GldB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001774 264.0
DYD3_k127_2713220_1 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.00000000000000000000000000000000000000000001564 164.0
DYD3_k127_2713220_2 Outer membrane protein beta-barrel domain - - - 0.00000000000001263 83.0
DYD3_k127_2715483_0 - - - - 3.242e-202 638.0
DYD3_k127_2715483_1 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000006679 204.0
DYD3_k127_2715483_2 protein kinase activity - - - 0.00001125 51.0
DYD3_k127_2715483_3 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00002618 48.0
DYD3_k127_2716751_0 PFAM Peptidase family M20 M25 M40 - - - 9.507e-202 636.0
DYD3_k127_2716751_1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K03772,K03773 - 5.2.1.8 0.00000000000000000000000000000000003057 140.0
DYD3_k127_2716751_3 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA K06169 - - 0.000000000000548 68.0
DYD3_k127_2723438_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 7.526e-281 881.0
DYD3_k127_2723438_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 2.124e-203 640.0
DYD3_k127_2723438_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005802 577.0
DYD3_k127_2723438_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 365.0
DYD3_k127_2723438_4 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001032 248.0
DYD3_k127_2723438_5 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000006206 230.0
DYD3_k127_2723438_6 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 - - 0.000000000000000000000000000000000000003418 163.0
DYD3_k127_2723438_7 Membrane - - - 0.000000000000000002744 89.0
DYD3_k127_2746414_0 DNA helicase K03657 - 3.6.4.12 1.075e-205 658.0
DYD3_k127_2746414_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 411.0
DYD3_k127_2746414_2 Trehalase K01194 - 3.2.1.28 0.00000000000000000000000000000000000000000000000000000000003599 208.0
DYD3_k127_2748913_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 375.0
DYD3_k127_2752805_0 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 341.0
DYD3_k127_2752805_1 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000003918 177.0
DYD3_k127_2752805_2 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000006443 164.0
DYD3_k127_2756584_0 PFAM Glycoside hydrolase family 65, central catalytic K00691 - 2.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 544.0
DYD3_k127_2756584_1 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 293.0
DYD3_k127_2756584_2 beta-phosphoglucomutase K01838 - 5.4.2.6 0.0000000000000000000000000000000000000000000000000000000000003261 217.0
DYD3_k127_2756584_3 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000000000000000000001397 150.0
DYD3_k127_2756584_5 zinc finger - - - 0.00006642 56.0
DYD3_k127_2757299_0 protein conserved in bacteria (DUF2329) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 583.0
DYD3_k127_2757299_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 477.0
DYD3_k127_2757299_2 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001908 281.0
DYD3_k127_2757299_3 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.0000000000000000000000000000000000000000000000002916 181.0
DYD3_k127_2758883_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 3.956e-241 752.0
DYD3_k127_2758883_1 membrane protein involved in aromatic hydrocarbon degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005823 317.0
DYD3_k127_2758883_2 Domain of unknown function (DUF3127) - - - 0.00000000000000000000000000000000000003101 146.0
DYD3_k127_2758883_4 energy transducer activity K01181,K03832 - 3.2.1.8 0.00000000000000000000499 108.0
DYD3_k127_2809440_0 COG1132 ABC-type multidrug transport system, ATPase and permease components K06147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 521.0
DYD3_k127_2809440_1 nUDIX hydrolase K01515,K12945 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0043167,GO:0043169,GO:0046872,GO:0052751 3.6.1.13 0.000000000000000000000000000000000002822 144.0
DYD3_k127_2809440_2 Belongs to the UPF0312 family - - - 0.00001094 48.0
DYD3_k127_2863405_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 627.0
DYD3_k127_2863405_1 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000003466 233.0
DYD3_k127_2863405_2 domain protein K01179,K01997,K04618 - 1.1.3.9,3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000108 239.0
DYD3_k127_2863405_3 protein secretion - - - 0.000000000000000000000000000000000000000000000001826 202.0
DYD3_k127_2863405_4 polysaccharide biosynthetic process K00655,K00721 - 2.3.1.51,2.4.1.83 0.0000000000000000000000000000000000000004621 166.0
DYD3_k127_2888314_0 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701 404.0
DYD3_k127_2888314_1 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004016 329.0
DYD3_k127_2888314_2 COG1705 Muramidase (flagellum-specific) - - - 0.0000000000000000000000000000000000000001608 157.0
DYD3_k127_2909401_0 Protein of unknown function (DUF2723) - - - 2.179e-254 803.0
DYD3_k127_2909401_1 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000002725 202.0
DYD3_k127_2912162_0 agmatine deiminase activity K08589,K10536 GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.22.37,3.5.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000451 501.0
DYD3_k127_2912162_1 YceI-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009647 259.0
DYD3_k127_2912162_2 Thioredoxin-like - - - 0.00000000000000000005974 97.0
DYD3_k127_2912162_3 - - - - 0.000399 53.0
DYD3_k127_2912162_5 SpoU rRNA Methylase family - - - 0.0004827 43.0
DYD3_k127_2950639_0 ribonuclease BN K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 325.0
DYD3_k127_2950639_1 Domain of unknown function (DUF1989) K09967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 314.0
DYD3_k127_2950639_10 YtxH-like protein - - - 0.000004196 52.0
DYD3_k127_2950639_11 Pfam SNARE associated Golgi protein - - - 0.0003851 45.0
DYD3_k127_2950639_2 YqcI/YcgG family K09190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001272 260.0
DYD3_k127_2950639_3 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000002135 214.0
DYD3_k127_2950639_4 Regulator - - - 0.000000000000000000000000000000000000000000000000000000000004505 210.0
DYD3_k127_2950639_5 chlorophyll binding K03640 - - 0.0000000000000000000000000000000000000000000001025 189.0
DYD3_k127_2950639_6 Domain of unknown function (DUF892) - - - 0.000000000000000000000000000000000000000000006381 181.0
DYD3_k127_2950639_7 - - - - 0.00000000000000000000128 99.0
DYD3_k127_2950639_8 - - - - 0.0000000000000002156 85.0
DYD3_k127_2950639_9 - - - - 0.000000000000001519 77.0
DYD3_k127_2975868_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 2.984e-217 695.0
DYD3_k127_2975868_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 493.0
DYD3_k127_2975868_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008494 290.0
DYD3_k127_2975868_3 Cytochrome c - - - 0.0000000000000000002808 92.0
DYD3_k127_2975868_4 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000003261 79.0
DYD3_k127_2975868_5 ABC transporter K15738 - - 0.00001323 47.0
DYD3_k127_2999689_0 Conserved repeat domain - - - 7.324e-218 713.0
DYD3_k127_2999689_2 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.0000000000000000000000000000000000000000000000000000004739 198.0
DYD3_k127_3013357_0 PFAM Family of - - - 0.0 1159.0
DYD3_k127_3013357_1 Esterase PHB depolymerase K03932 - - 0.000000000000000007649 89.0
DYD3_k127_3020516_0 domain protein K13735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 296.0
DYD3_k127_3020516_1 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000001738 223.0
DYD3_k127_3020516_2 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000000002474 197.0
DYD3_k127_3020516_3 MOSC domain - - - 0.000404 47.0
DYD3_k127_3039598_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 6.877e-221 699.0
DYD3_k127_3039598_1 PFAM Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 338.0
DYD3_k127_3076888_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 1.283e-194 627.0
DYD3_k127_3076888_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008393 564.0
DYD3_k127_3076888_10 - - - - 0.00000000000000000182 98.0
DYD3_k127_3076888_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 429.0
DYD3_k127_3076888_3 Uncharacterised 5xTM membrane BCR, YitT family COG1284 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 400.0
DYD3_k127_3076888_4 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 346.0
DYD3_k127_3076888_5 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 303.0
DYD3_k127_3076888_6 trehalose utilisation K08738,K09992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001497 247.0
DYD3_k127_3076888_7 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007468 260.0
DYD3_k127_3076888_8 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000003089 196.0
DYD3_k127_3076888_9 Phosphohydrolase - - - 0.00000000000000000000000000000000000000000000004304 175.0
DYD3_k127_3086191_0 Heat shock protein Hsp90 K04079 - - 4.247e-254 797.0
DYD3_k127_3086191_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007505 278.0
DYD3_k127_3086191_2 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000004762 254.0
DYD3_k127_3087187_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 7.109e-261 812.0
DYD3_k127_3087187_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 500.0
DYD3_k127_3087187_2 Pfam Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007411 330.0
DYD3_k127_3087187_3 Outer membrane protein Omp28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 308.0
DYD3_k127_3087187_4 PFAM PspC domain K03973 - - 0.000000000000000000000000000000000000000000000000000005449 199.0
DYD3_k127_3087187_5 synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000001285 177.0
DYD3_k127_3087187_6 Transcriptional regulator K10947 - - 0.00000000000000000000000000000000000000001087 155.0
DYD3_k127_3087187_7 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000363 147.0
DYD3_k127_3087187_8 4Fe-4S dicluster domain - - - 0.0000000000000000000000000001121 120.0
DYD3_k127_3087720_0 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000008749 235.0
DYD3_k127_3087720_1 Oxygen tolerance - - - 0.00000000000000000000000000000000000000000000000001951 200.0
DYD3_k127_3087720_2 Tetratricopeptide repeat - - - 0.000000000002829 75.0
DYD3_k127_3087720_3 Tetratricopeptide repeat - - - 0.00000003217 65.0
DYD3_k127_3087720_4 Oxygen tolerance - - - 0.00000007399 59.0
DYD3_k127_309872_0 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005933 578.0
DYD3_k127_309872_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000003326 247.0
DYD3_k127_309872_2 - - - - 0.00000000000000000000000000000000000000000000000003161 184.0
DYD3_k127_309872_3 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000000004059 137.0
DYD3_k127_309872_4 acid phosphatase activity - - - 0.00000000000000000000008459 109.0
DYD3_k127_309872_5 Lipocalin-like domain - - - 0.00000000009656 67.0
DYD3_k127_309872_6 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000006356 57.0
DYD3_k127_3099366_0 FAD-dependent dehydrogenase K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 612.0
DYD3_k127_3099366_1 Protein related to penicillin acylase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 595.0
DYD3_k127_3099366_2 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 451.0
DYD3_k127_3099366_3 Peroxide stress protein YaaA K09861 - - 0.0000000000000000000000000000000000000000000000000000000000000000008285 235.0
DYD3_k127_3099366_4 SURF4 family K15977 - - 0.0000000000000000000000000000000000000001318 154.0
DYD3_k127_3099366_5 Protein of unknown function (DUF1573) - - - 0.000000000000000000000000000000001019 136.0
DYD3_k127_3099366_6 oxidoreductase activity, acting on CH-OH group of donors - - - 0.0000000000000000002804 93.0
DYD3_k127_3099366_7 2TM domain - - - 0.000001176 56.0
DYD3_k127_3099366_8 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000006866 58.0
DYD3_k127_3104674_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 9.099e-243 756.0
DYD3_k127_3104674_1 Biotin carboxylase C-terminal domain K01961,K01965 - 6.3.4.14,6.4.1.2,6.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 454.0
DYD3_k127_3104674_2 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000008599 234.0
DYD3_k127_3104674_3 FeS assembly ATPase SufC K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.000000000000000000000000003256 113.0
DYD3_k127_3116269_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 473.0
DYD3_k127_3116269_1 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 468.0
DYD3_k127_3116269_2 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 307.0
DYD3_k127_3116269_3 Conserved repeat domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004715 288.0
DYD3_k127_3116269_4 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000002533 86.0
DYD3_k127_3118011_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 466.0
DYD3_k127_3118011_1 Conserved hypothetical protein (DUF2461) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001147 280.0
DYD3_k127_3118011_2 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000002347 210.0
DYD3_k127_3118011_3 PFAM BlaR1 peptidase M56 - - - 0.0000000000000001634 86.0
DYD3_k127_3118852_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006121 542.0
DYD3_k127_3118852_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005692 357.0
DYD3_k127_3118852_2 Biogenesis protein - - - 0.00000000000000000000000000000000000000000000007026 175.0
DYD3_k127_3118852_3 - - - - 0.00000000000000000000000002155 120.0
DYD3_k127_3138780_0 glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003471 569.0
DYD3_k127_3138780_1 - - - - 0.00000000000000000000000000000004319 137.0
DYD3_k127_3138780_2 oxidoreductase activity - - - 0.000000000000000000000000002412 116.0
DYD3_k127_3148148_0 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 357.0
DYD3_k127_3148148_1 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000004043 238.0
DYD3_k127_3148148_2 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000000000000000000000000000000000000000000000001135 226.0
DYD3_k127_3148148_3 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000008046 230.0
DYD3_k127_3148148_4 PFAM Biopolymer transport protein ExbD TolR - - - 0.00000000000000000000000000000000000000000000000000000001412 203.0
DYD3_k127_3148148_5 ABC-type phosphate transport system periplasmic K02040 - - 0.000000000000000000000000000000000000000000003105 175.0
DYD3_k127_316862_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 1.148e-212 669.0
DYD3_k127_316862_1 PFAM Cytochrome c assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 383.0
DYD3_k127_316862_2 ABC-type transport system involved in cytochrome c biogenesis permease component K02194 - - 0.00000000000000000000000000002778 126.0
DYD3_k127_3180986_0 COG2373 Large extracellular alpha-helical protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 561.0
DYD3_k127_3180986_1 Serine protease, subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 398.0
DYD3_k127_3180986_2 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 363.0
DYD3_k127_3180986_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 340.0
DYD3_k127_3180986_4 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001097 294.0
DYD3_k127_3180986_5 Serine protease, subtilase family - - - 0.0000000000000000000000000000000000000000000000002833 195.0
DYD3_k127_3180986_6 YjbR - - - 0.00000000000000000000000000000000000000000008833 163.0
DYD3_k127_3180986_7 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000003473 171.0
DYD3_k127_3180986_8 Sterol-binding domain protein - - - 0.000000000000000000000000000000003518 130.0
DYD3_k127_3180986_9 Tetratricopeptide repeat - - - 0.0000000001585 72.0
DYD3_k127_3202816_0 Bacterial membrane protein YfhO - - - 3.214e-226 726.0
DYD3_k127_3202816_1 Oxidoreductase family, C-terminal alpha beta domain K13016 - 1.1.1.335 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 338.0
DYD3_k127_3202816_2 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 325.0
DYD3_k127_3202816_3 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000003791 260.0
DYD3_k127_3202816_4 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000002133 142.0
DYD3_k127_3217130_0 Fungalysin metallopeptidase (M36) - - - 2.695e-213 710.0
DYD3_k127_3217130_1 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000427 562.0
DYD3_k127_3217130_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 355.0
DYD3_k127_3217130_3 thiolester hydrolase activity K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004349 321.0
DYD3_k127_3217130_4 Berberine and berberine like - - - 0.000000000000000000000000000000000000000000000000000000000000000003815 226.0
DYD3_k127_3218385_0 domain, Protein K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 492.0
DYD3_k127_3218385_1 Caulimovirus viroplasmin K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001649 258.0
DYD3_k127_3218385_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000005743 210.0
DYD3_k127_3218385_3 hydrolase, TatD K03424 - - 0.00000000000000000000000000000000000000000001394 170.0
DYD3_k127_3218385_4 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000005793 117.0
DYD3_k127_3228407_0 PFAM Glycosyl transferase family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 329.0
DYD3_k127_3228407_1 Protein of unknown function (DUF2652) - - - 0.00000000000000000000000000000000000000000000000000000000000004635 229.0
DYD3_k127_3228407_2 Protein of unknown function (DUF3606) - - - 0.0000000000000004197 79.0
DYD3_k127_3278699_0 Glutathione synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 467.0
DYD3_k127_3278699_1 metallopeptidase activity K12287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001588 292.0
DYD3_k127_3278699_2 GMP synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001957 240.0
DYD3_k127_3278699_3 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000002971 175.0
DYD3_k127_3278699_4 TM2 domain - - - 0.0000000000000000000000000000000000009921 156.0
DYD3_k127_3278699_5 Glycogen recognition site of AMP-activated protein kinase - - - 0.00000000000000000000000000000000002032 137.0
DYD3_k127_3278699_6 Protein of unknown function (Porph_ging) - - - 0.00000000000000000000000000000006634 134.0
DYD3_k127_3286640_0 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 1.017e-196 618.0
DYD3_k127_3286640_1 PFAM pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 419.0
DYD3_k127_3286640_2 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000001744 214.0
DYD3_k127_3286640_3 ABC transporter K18890 - - 0.000000000000000000000000000001192 122.0
DYD3_k127_3286835_0 DNA polymerase III K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 380.0
DYD3_k127_3286835_1 Membrane protein TerC, possibly involved in tellurium resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000207 254.0
DYD3_k127_3286835_2 cytochrome C peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000001324 233.0
DYD3_k127_329174_0 D-arabinono-1,4-lactone oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 421.0
DYD3_k127_329174_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004412 443.0
DYD3_k127_329174_2 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000003791 224.0
DYD3_k127_3295302_0 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.00000000000000000000000000000000000001062 151.0
DYD3_k127_3295302_1 PFAM RNA binding S1 domain protein K02945 - - 0.00000000000000000005936 93.0
DYD3_k127_3303437_0 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 585.0
DYD3_k127_3303437_1 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000001301 252.0
DYD3_k127_3303437_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000002684 116.0
DYD3_k127_3303437_3 - - - - 0.000000000000000000001393 101.0
DYD3_k127_3303437_4 - - - - 0.0000000000000000654 86.0
DYD3_k127_3303437_5 - - - - 0.0004634 50.0
DYD3_k127_3304252_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 1407.0
DYD3_k127_3308388_0 Cell shape determining protein MreB Mrl K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005578 553.0
DYD3_k127_3308388_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007941 372.0
DYD3_k127_3308388_2 Peptidase M16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005035 284.0
DYD3_k127_3308388_3 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000096 210.0
DYD3_k127_3308388_4 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000003074 74.0
DYD3_k127_3318137_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000001209 231.0
DYD3_k127_3318137_1 COG3209 Rhs family protein - - - 0.000000002579 69.0
DYD3_k127_3324640_0 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000000005056 253.0
DYD3_k127_3324640_1 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000003711 153.0
DYD3_k127_3324640_2 - - - - 0.00000000000000000001768 93.0
DYD3_k127_3324640_3 Outer membrane protein beta-barrel domain - - - 0.00000000000000001453 91.0
DYD3_k127_3337361_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 449.0
DYD3_k127_3337361_1 Belongs to the glycosyl hydrolase 13 family - - - 0.00000000000000000000000000000000006848 148.0
DYD3_k127_3337361_2 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.0000000000003183 81.0
DYD3_k127_3369037_0 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 291.0
DYD3_k127_3369037_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000001312 235.0
DYD3_k127_3369037_2 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000247 260.0
DYD3_k127_3369037_3 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000000000000000006552 166.0
DYD3_k127_3369037_4 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000001072 156.0
DYD3_k127_3399493_0 TonB dependent receptor K02014 - - 0.0 1135.0
DYD3_k127_3399493_1 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000199 280.0
DYD3_k127_3435497_0 Participates in both transcription termination and antitermination K02600 - - 2.737e-201 633.0
DYD3_k127_3435497_1 Radical SAM K11784 - 1.21.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 583.0
DYD3_k127_3435497_2 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007838 324.0
DYD3_k127_3435497_3 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001075 260.0
DYD3_k127_3435497_4 COG1705 Muramidase (flagellum-specific) - - - 0.0000000000000000000000000000000000000000001185 169.0
DYD3_k127_3435497_6 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000001045 110.0
DYD3_k127_3510984_0 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001654 261.0
DYD3_k127_3510984_1 Peptidase family C25 - - - 0.0000000000000000000000000000004389 132.0
DYD3_k127_3510984_2 Modulates RecA activity K03565 - - 0.000000000000000000001219 100.0
DYD3_k127_3510984_3 mevalonate kinase activity K00054,K00869,K01641 - 1.1.1.88,2.3.3.10,2.7.1.36 0.0000006053 55.0
DYD3_k127_3528037_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009448 510.0
DYD3_k127_3528037_1 - - - - 0.00000000000000000000000000000000003236 138.0
DYD3_k127_35302_0 Cys/Met metabolism PLP-dependent enzyme K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006115 526.0
DYD3_k127_35302_1 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004719 352.0
DYD3_k127_35302_2 FeS assembly protein SufD K09015 - - 0.00000000000000000000000000000000000000000000000000000000000006408 221.0
DYD3_k127_35302_3 Fe-S assembly ATPase, SufC K09013 - - 0.00000000000000000000000000000000000000000000000000000000000008545 215.0
DYD3_k127_35302_4 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000003136 174.0
DYD3_k127_35302_5 Fe-S metabolism associated domain K02426 - - 0.0000000000000000000000000000000000000000000002358 177.0
DYD3_k127_35302_6 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000006684 106.0
DYD3_k127_35302_7 TIGRFAM FeS assembly protein SufD K09015 - - 0.00000000000000001494 89.0
DYD3_k127_3573146_0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 327.0
DYD3_k127_3573146_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000008645 249.0
DYD3_k127_3573146_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.000000002702 59.0
DYD3_k127_359392_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 600.0
DYD3_k127_359392_1 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005615 259.0
DYD3_k127_359392_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000002818 143.0
DYD3_k127_359392_3 PFAM Sigma 54 modulation protein S30EA ribosomal protein K05808 - - 0.00000000000000000000000000000284 124.0
DYD3_k127_3595162_0 Na dependent nucleoside transporter K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009774 522.0
DYD3_k127_3595162_1 PFAM Cytochrome c assembly protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006326 351.0
DYD3_k127_3595162_2 uridine kinase K00876 - 2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000000112 233.0
DYD3_k127_3595162_3 NADP oxidoreductase coenzyme F420-dependent - - - 0.0000000000000000000000000000000000000000000000000005599 193.0
DYD3_k127_3595571_0 Thrombospondin type 3 repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001469 266.0
DYD3_k127_3595571_1 Domain of unknown function (DUF305) - - - 0.000000000000000000000000000000000002249 146.0
DYD3_k127_3595571_2 PFAM Excinuclease ABC C subunit domain protein - - - 0.00000000000001152 81.0
DYD3_k127_362724_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 5.508e-255 799.0
DYD3_k127_362724_1 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 349.0
DYD3_k127_362724_2 - - - - 0.0000000000000000000000000000000000000000007639 162.0
DYD3_k127_362724_3 - - - - 0.0000000000000000000000000000000006448 138.0
DYD3_k127_362724_4 polysaccharide catabolic process K01179 - 3.2.1.4 0.000003366 59.0
DYD3_k127_3637462_0 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007774 451.0
DYD3_k127_3637462_1 Peptidase family C25 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 441.0
DYD3_k127_3637462_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000004495 211.0
DYD3_k127_3711758_0 Arginine deiminase K01478 - 3.5.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 532.0
DYD3_k127_3711758_1 thioesterase K07107 - - 0.00000000000000000000000000000000000000203 151.0
DYD3_k127_3711758_2 ribonuclease BN K07058 - - 0.0000000000000000000000008289 111.0
DYD3_k127_3711758_3 - - - - 0.0000000000000000000001121 102.0
DYD3_k127_3717974_0 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 376.0
DYD3_k127_3717974_1 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 331.0
DYD3_k127_3717974_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001164 255.0
DYD3_k127_3717974_3 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.000000000000000000000000000000000000007203 146.0
DYD3_k127_3717974_4 tigr02436 - - - 0.0000000000000000000000000000000000001648 144.0
DYD3_k127_3717974_5 PFAM Phosphoesterase, HXTX - - - 0.00000000000001044 81.0
DYD3_k127_3758121_0 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003303 391.0
DYD3_k127_3758121_1 Nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 339.0
DYD3_k127_3758121_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 330.0
DYD3_k127_3758121_3 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.00000000000000000000000000000000000000000000000000000000000000000007033 235.0
DYD3_k127_3775135_0 TonB-linked outer membrane protein, SusC RagA family - - - 2.551e-232 754.0
DYD3_k127_3775135_1 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 535.0
DYD3_k127_3775135_2 SusD family K21572 - - 0.0000000000000000000000000000000000000000000000000000000000001924 222.0
DYD3_k127_3775135_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000000000000000000000000000000000001027 178.0
DYD3_k127_3775135_4 ASPIC and UnbV - - - 0.0000000000000000000000008427 121.0
DYD3_k127_3791549_0 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 370.0
DYD3_k127_3791549_1 Protease Do-like 1, chloroplastic - GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009987,GO:0010033,GO:0010206,GO:0015979,GO:0016020,GO:0016787,GO:0017171,GO:0019538,GO:0019684,GO:0030091,GO:0030163,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 361.0
DYD3_k127_3791549_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 338.0
DYD3_k127_3815620_0 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003479 479.0
DYD3_k127_3815620_1 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000001218 205.0
DYD3_k127_3815620_2 RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000000000000003533 181.0
DYD3_k127_3845790_0 PFAM glycoside hydrolase family 3 - - - 7.616e-201 649.0
DYD3_k127_3845790_1 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 338.0
DYD3_k127_3845790_2 Domain of unknown function (DUF4440) - - - 0.000000000000000000002888 96.0
DYD3_k127_3853577_0 Ribose-phosphate pyrophosphokinase K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 392.0
DYD3_k127_3853577_1 Carbon-nitrogen hydrolase K13566 - 3.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001311 254.0
DYD3_k127_3853577_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000468 193.0
DYD3_k127_38844_0 TonB dependent receptor - - - 2.341e-229 735.0
DYD3_k127_38844_1 RagB SusD domain protein K21572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 563.0
DYD3_k127_3909851_0 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000001208 206.0
DYD3_k127_3909851_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000008593 171.0
DYD3_k127_3909851_2 Glycosyltransferase like family 2 - - - 0.0000000000000000000000187 110.0
DYD3_k127_3909851_3 Radical SAM domain protein - - - 0.00000000000000000252 84.0
DYD3_k127_3931028_0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 541.0
DYD3_k127_3931028_1 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 318.0
DYD3_k127_3931075_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009808 561.0
DYD3_k127_3931075_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000004328 264.0
DYD3_k127_3931075_2 PFAM MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000004521 223.0
DYD3_k127_3931075_3 helix_turn_helix ASNC type K03718 - - 0.000000000000000000000000000000000005943 143.0
DYD3_k127_3964417_0 Cellulose synthase K00694 - 2.4.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 553.0
DYD3_k127_3964417_1 mevalonate kinase activity K00869,K00938 - 2.7.1.36,2.7.4.2 0.00000000000000000000000000000000000000000000000000000000000000000003296 239.0
DYD3_k127_3964417_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000003189 203.0
DYD3_k127_3964417_3 Belongs to the glycosyl hydrolase 26 family K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000005912 185.0
DYD3_k127_3964417_4 COG COG0147 Anthranilate para-aminobenzoate synthases component I K01665 - 2.6.1.85 0.0000000000000000000000000000000000000089 146.0
DYD3_k127_3964417_5 Psort location Cytoplasmic, score 8.96 K02619 - 4.1.3.38 0.0000000000000000000000000000000002333 140.0
DYD3_k127_3964417_6 Ribosomal RNA adenine dimethylase - - - 0.000000000000000000000004696 108.0
DYD3_k127_3964417_7 - - - - 0.000000000000000002779 94.0
DYD3_k127_3985309_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 505.0
DYD3_k127_3985309_1 Domain of unknown function (DUF4143) K07133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 417.0
DYD3_k127_3985309_2 ATPase (AAA superfamily) K07133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 409.0
DYD3_k127_3985309_3 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004604 271.0
DYD3_k127_3985309_4 SNF2 family N-terminal domain - - - 0.0008684 44.0
DYD3_k127_399163_0 homogentisate 12-dioxygenase K00451 - 1.13.11.5 8.261e-219 683.0
DYD3_k127_399163_1 Fumarylacetoacetase K01555 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004642 412.0
DYD3_k127_4007347_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0 1073.0
DYD3_k127_4007347_1 fructose-bisphosphate aldolase, class II, yeast E. coli subtype K01624 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 564.0
DYD3_k127_4007347_2 Thioredoxin reductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 503.0
DYD3_k127_4007347_3 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 495.0
DYD3_k127_4007347_4 Subtilase family K08651 - 3.4.21.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000606 372.0
DYD3_k127_4007347_5 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000001431 211.0
DYD3_k127_4007347_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000006002 130.0
DYD3_k127_4007347_7 - - - - 0.0000000000000000000000000000003107 128.0
DYD3_k127_4008530_0 Peptidase family C25 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005587 559.0
DYD3_k127_4008530_1 Type IX secretion system membrane protein PorP/SprF - - - 0.00000000000000000000000000000000000000000000000000000000000000003784 235.0
DYD3_k127_4009803_0 domain, Protein - - - 0.00000000000000000000000000000000000000000005612 181.0
DYD3_k127_4009803_1 Peptidase family M50 - - - 0.00000000000000000000000000581 117.0
DYD3_k127_4009803_2 Sec-independent protein translocase protein TatA K03116 - - 0.0000000000000000001617 91.0
DYD3_k127_4009803_3 - - - - 0.00000000001455 72.0
DYD3_k127_4009803_4 membrane K06142 - - 0.00006916 51.0
DYD3_k127_4022312_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 2.104e-248 776.0
DYD3_k127_4022312_1 Male sterility protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 363.0
DYD3_k127_4022312_2 PFAM Starch synthase, catalytic domain K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 353.0
DYD3_k127_4022312_3 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001342 280.0
DYD3_k127_4022312_4 Domain of unknown function (DUF4270) - - - 0.00000000000000000000000000000000000000000002807 178.0
DYD3_k127_4031787_0 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 7.724e-197 623.0
DYD3_k127_4031787_1 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003143 609.0
DYD3_k127_4031787_2 Histidine ammonia-lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 467.0
DYD3_k127_4031787_3 Succinate dehydrogenase fumarate reductase Fe-S protein subunit K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005409 380.0
DYD3_k127_4031787_4 HWE histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000197 241.0
DYD3_k127_4031787_5 Membrane - - - 0.000000000000000005492 94.0
DYD3_k127_4080927_0 alpha beta - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 304.0
DYD3_k127_4080927_1 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000006206 230.0
DYD3_k127_4080927_2 Glyoxalase-like domain K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000001698 183.0
DYD3_k127_4080927_3 Domain of unknown function (DUF4783) - - - 0.00000003319 61.0
DYD3_k127_411190_0 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 552.0
DYD3_k127_411190_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003917 335.0
DYD3_k127_411190_2 MraZ protein, putative antitoxin-like K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.000000000000000000000000000000000000000004802 159.0
DYD3_k127_411190_3 Type II restriction enzyme, methylase subunits - - - 0.0000000000000000000000993 101.0
DYD3_k127_411190_4 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000001416 92.0
DYD3_k127_411190_5 Helix-turn-helix domain - - - 0.000000000000000002221 88.0
DYD3_k127_411190_6 - - - - 0.0000000000113 68.0
DYD3_k127_4116671_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 5.821e-299 935.0
DYD3_k127_4116671_1 PFAM MazG nucleotide pyrophosphohydrolase K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 306.0
DYD3_k127_4116671_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000004523 126.0
DYD3_k127_4133288_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 445.0
DYD3_k127_4133288_1 Rhodanese Homology Domain K06917 - - 0.000000000000000000000000000000000000000000000004291 178.0
DYD3_k127_4133288_2 Exonuclease - - - 0.0000000000000000000000000000000000000000000002786 174.0
DYD3_k127_4139267_0 Guanylyl transferase CofC like K09931 - - 0.00000000000000000000000000000000000001525 151.0
DYD3_k127_4139267_1 energy transducer activity K03832,K07126 - - 0.00000000000000000000000000000000000649 149.0
DYD3_k127_4139267_2 - - - - 0.0000000000000000000682 94.0
DYD3_k127_4139267_3 Anti-sigma-K factor rskA - - - 0.00009892 51.0
DYD3_k127_4163019_0 transglycosylase K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002336 277.0
DYD3_k127_4163019_1 Peptidase M50 - - - 0.000000000000000000000000000000001881 132.0
DYD3_k127_4200715_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 615.0
DYD3_k127_4200795_0 DoxX family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 289.0
DYD3_k127_4200795_1 Domain of Unknown Function (DUF1599) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000301 236.0
DYD3_k127_4200795_2 PFAM Uncharacterised protein family UPF0029, Impact, N-terminal - - - 0.000000000000000000000000000000000000009163 148.0
DYD3_k127_4210478_0 elongation factor G domain IV K02355 - - 7.239e-316 981.0
DYD3_k127_4210478_1 heme binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 508.0
DYD3_k127_4210478_2 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 308.0
DYD3_k127_4210478_3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002672 265.0
DYD3_k127_4224833_0 Transporter associated domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 499.0
DYD3_k127_4224833_1 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000456 246.0
DYD3_k127_4224833_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000000000002807 150.0
DYD3_k127_4224833_3 Protein of unknown function (DUF4230) - - - 0.00000000000000000000000000000000007565 140.0
DYD3_k127_42293_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009476 595.0
DYD3_k127_42293_1 chaperone-mediated protein folding K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006565 267.0
DYD3_k127_42293_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000003535 190.0
DYD3_k127_42293_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000000000000000000007645 139.0
DYD3_k127_4230197_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 8.949e-303 940.0
DYD3_k127_4230197_1 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 616.0
DYD3_k127_4230197_2 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 343.0
DYD3_k127_4230197_3 NUDIX domain - - - 0.000000000000000000000000000000000000001789 155.0
DYD3_k127_4230197_4 Domain of unknown function (DUF4271) - - - 0.0003644 52.0
DYD3_k127_4245956_0 PhoQ Sensor K01768,K16923,K19694 - 4.6.1.1 1.182e-253 837.0
DYD3_k127_4245956_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 1.844e-251 792.0
DYD3_k127_4245956_2 Cytochrome c - - - 0.0000000000000000006318 90.0
DYD3_k127_4301698_0 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 514.0
DYD3_k127_4301698_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004726 335.0
DYD3_k127_4301698_2 Outer membrane protein beta-barrel domain - - - 0.00001145 50.0
DYD3_k127_4316657_0 Phenylacetic acid degradation protein PaaN K02618 - 1.2.1.91,3.3.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 406.0
DYD3_k127_4316657_1 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004411 365.0
DYD3_k127_433819_0 Pkd domain containing protein - - - 2.478e-205 676.0
DYD3_k127_433819_1 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 5.782e-203 646.0
DYD3_k127_433819_2 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007086 598.0
DYD3_k127_4371680_0 ribonuclease, Rne Rng family K08301 - - 2.678e-223 702.0
DYD3_k127_4371680_1 glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005008 253.0
DYD3_k127_4371680_2 PFAM YicC-like family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006811 246.0
DYD3_k127_4371680_3 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000001776 211.0
DYD3_k127_4371680_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000009325 172.0
DYD3_k127_4371680_5 Belongs to the bacterial histone-like protein family K03530 - - 0.0000000000000000000000000000000000000001732 151.0
DYD3_k127_4371680_6 Bacterial-like globin K06886 - - 0.000000000000000000000000000000000001044 142.0
DYD3_k127_4371680_7 protein affecting Mg2 Co2 transport K06195 - - 0.000000000000000000000000000000001131 134.0
DYD3_k127_4371680_8 PFAM Uncharacterised protein family UPF0150 - - - 0.000000000000000000000000000001887 121.0
DYD3_k127_4371680_9 - - - - 0.0000001116 53.0
DYD3_k127_437593_0 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004646 251.0
DYD3_k127_437593_1 cephalosporin hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000007285 201.0
DYD3_k127_437593_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000009758 140.0
DYD3_k127_437593_3 Putative rhamnosyl transferase - - - 0.000000000000000000000000000005532 129.0
DYD3_k127_4385622_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 451.0
DYD3_k127_4385622_1 outer membrane efflux protein K12340 - - 0.000000000000000000000000000001559 131.0
DYD3_k127_4385622_2 protein conserved in bacteria K09931 - - 0.0000000000001182 74.0
DYD3_k127_4430226_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.0 1152.0
DYD3_k127_4430226_1 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 585.0
DYD3_k127_4430226_2 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006396 347.0
DYD3_k127_4430226_3 glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 349.0
DYD3_k127_4430226_4 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000001839 239.0
DYD3_k127_4430226_5 Protein conserved in bacteria K09950 - - 0.000000000000000000000000000000000000000000000000000002584 194.0
DYD3_k127_4430226_6 Lytic transglycolase K03642 - - 0.000000000000000000000001416 107.0
DYD3_k127_4430226_7 transferase activity, transferring amino-acyl groups - - - 0.00000000000000000002251 103.0
DYD3_k127_446473_0 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000019 200.0
DYD3_k127_446473_1 PFAM EamA-like transporter family - - - 0.00000000000000000000000000000000000000007332 158.0
DYD3_k127_446473_2 Clp protease adaptor protein ClpS K06891 - - 0.000000000000000000000000003827 114.0
DYD3_k127_446473_3 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000001078 111.0
DYD3_k127_4464839_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009742 325.0
DYD3_k127_4464839_1 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000004653 228.0
DYD3_k127_4509398_0 Rhodanese Homology Domain - - - 0.000000000000000000003302 98.0
DYD3_k127_4509398_1 START domain - - - 0.00000000000000000009202 97.0
DYD3_k127_4509398_2 - - - - 0.000000001124 66.0
DYD3_k127_4509398_3 Restriction endonuclease K07448 - - 0.00001018 56.0
DYD3_k127_4528199_0 Organic solvent tolerance protein OstA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 306.0
DYD3_k127_4528199_1 Ami_3 K01448 - 3.5.1.28 0.0000000000003462 72.0
DYD3_k127_4534736_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 580.0
DYD3_k127_4534736_1 subfamily IA, variant 3 with third motif having DD or ED - - - 0.00000000000000000000000000000000000000000000000000000006669 203.0
DYD3_k127_4534736_2 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K15460 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016426,GO:0016430,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.223 0.0000000000000000000000000000002806 132.0
DYD3_k127_4534736_3 anaphase-promoting complex binding - - - 0.000000000000000000000000000029 131.0
DYD3_k127_4534736_4 COG NOG19094 non supervised orthologous group - - - 0.0000000000000000000000000005094 115.0
DYD3_k127_4551648_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.303e-200 636.0
DYD3_k127_4551648_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 556.0
DYD3_k127_4551648_2 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 314.0
DYD3_k127_4551648_3 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007458 305.0
DYD3_k127_4551648_4 PFAM Tetratricopeptide - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001247 274.0
DYD3_k127_4551648_5 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000000000006889 125.0
DYD3_k127_4551648_6 Domain of unknown function (DUF4292) - - - 0.00000000000000002607 91.0
DYD3_k127_4567486_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 343.0
DYD3_k127_4567486_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000000000001798 207.0
DYD3_k127_4568142_0 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007449 516.0
DYD3_k127_4568142_1 Psort location OuterMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009519 296.0
DYD3_k127_4568142_2 Methyltransferase domain - - - 0.000000008464 58.0
DYD3_k127_4572270_0 TonB-dependent receptor plug K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002672 303.0
DYD3_k127_4572270_1 Domain of unknown function (DUF4465) - - - 0.00000000000000000000000000000000000000000000000000000000000000004581 231.0
DYD3_k127_4579644_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 526.0
DYD3_k127_4579644_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003467 450.0
DYD3_k127_4579644_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007566 404.0
DYD3_k127_4579644_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 359.0
DYD3_k127_4579644_4 Septum formation inhibitor - - - 0.000000000000007783 78.0
DYD3_k127_4586744_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 576.0
DYD3_k127_4586744_1 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 378.0
DYD3_k127_4586744_2 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000004481 186.0
DYD3_k127_4586744_3 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.00000000000000000000000000000000000007321 145.0
DYD3_k127_4586744_4 Chaperone of endosialidase - - - 0.0000000000000000000000000000000001558 144.0
DYD3_k127_462884_0 PFAM Aldo keto reductase family K19265 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 505.0
DYD3_k127_462884_1 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003973 273.0
DYD3_k127_462884_2 Transposase IS200 like - - - 0.0000000000000000000000000000000000000000000000000000000000832 209.0
DYD3_k127_462884_3 Hep Hag repeat protein K08961,K10536 - 3.5.3.12,4.2.2.20,4.2.2.21 0.0000000000000000000000000000000000000000000000001122 190.0
DYD3_k127_462884_4 acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.00000000000000000000000000000000000000004032 153.0
DYD3_k127_462884_5 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000003211 112.0
DYD3_k127_462884_6 Belongs to the peptidase S8 family - - - 0.0006946 51.0
DYD3_k127_4654480_0 PKD domain containing protein - - - 1.092e-231 739.0
DYD3_k127_4654480_1 DNA mismatch repair protein MutT K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 460.0
DYD3_k127_4654480_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000006688 171.0
DYD3_k127_4654480_3 Belongs to the SUA5 family K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000596 166.0
DYD3_k127_4654480_4 - - - - 0.00000000000008789 79.0
DYD3_k127_4661960_0 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000002771 176.0
DYD3_k127_4661960_1 TIGRFAM ComEC Rec2-related protein K02238 - - 0.00000000000000000000000000000000000000005934 173.0
DYD3_k127_4661960_2 Helix-hairpin-helix motif - - - 0.000000000000000000000000000000000454 143.0
DYD3_k127_4661960_4 rRNA binding - - - 0.00000000000003018 82.0
DYD3_k127_4661960_5 ABC transporter K18889 - - 0.0000000003617 63.0
DYD3_k127_4665077_0 Protein conserved in bacteria - - - 5.04e-197 656.0
DYD3_k127_4665077_1 Pasta domain K01921,K08884,K12132 - 2.7.11.1,6.3.2.4 0.00000000000000000641 92.0
DYD3_k127_467134_0 DNA helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000001556 191.0
DYD3_k127_467134_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000006612 195.0
DYD3_k127_467134_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000008354 170.0
DYD3_k127_467134_3 - - - - 0.0000000000000000000000000000002538 124.0
DYD3_k127_467134_4 Pkd domain containing protein - - - 0.000007527 59.0
DYD3_k127_4673638_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 546.0
DYD3_k127_4673638_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001388 258.0
DYD3_k127_4673638_2 Thioredoxin - - - 0.00000000000000000000000000000000000000000001538 168.0
DYD3_k127_4673638_3 - - - - 0.000000000000888 70.0
DYD3_k127_4673638_4 - - - - 0.0000008322 52.0
DYD3_k127_4683348_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009146 539.0
DYD3_k127_4683348_1 ABC 3 transport family K11708,K11709 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004918 486.0
DYD3_k127_4683348_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000007138 143.0
DYD3_k127_4683348_3 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000001514 111.0
DYD3_k127_4827367_0 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K01585 - 4.1.1.19 1.4e-217 683.0
DYD3_k127_4827367_1 Peptidase, M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 411.0
DYD3_k127_4827367_2 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005242 280.0
DYD3_k127_4827367_3 transport protein CorA K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001439 283.0
DYD3_k127_4827367_4 Glutathione peroxidase K03564 - 1.11.1.15 0.00000000000000000000000000000000000001053 149.0
DYD3_k127_483839_0 TPR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005807 306.0
DYD3_k127_483839_1 C4-type zinc ribbon domain K07164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002577 257.0
DYD3_k127_483839_2 protein conserved in bacteria - - - 0.0000000000000000000001476 102.0
DYD3_k127_483839_3 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.00000000000000002725 81.0
DYD3_k127_483839_4 - - - - 0.000000000757 68.0
DYD3_k127_4853716_0 Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 369.0
DYD3_k127_4853716_1 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 310.0
DYD3_k127_4853716_2 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000005024 249.0
DYD3_k127_4853716_3 - - - - 0.0000000000000000000001015 102.0
DYD3_k127_4853716_4 Domain of unknown function (DUF4260) - - - 0.000000001158 59.0
DYD3_k127_4865613_0 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 381.0
DYD3_k127_4865613_1 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 321.0
DYD3_k127_4865613_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000001719 154.0
DYD3_k127_4865613_3 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000000003428 141.0
DYD3_k127_4865613_5 PFAM Tetratricopeptide - - - 0.00000000006855 69.0
DYD3_k127_4885042_0 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 7.566e-194 610.0
DYD3_k127_4885042_1 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 541.0
DYD3_k127_4885042_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 408.0
DYD3_k127_4885042_3 Male sterility protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 394.0
DYD3_k127_4885042_4 ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000002432 233.0
DYD3_k127_4885042_5 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000001839 183.0
DYD3_k127_4916834_0 Bacterial protein of unknown function (DUF853) K06915 - - 5.629e-214 675.0
DYD3_k127_491750_0 PFAM ASPIC and UnbV - - - 5.456e-265 856.0
DYD3_k127_491750_1 domain, Protein K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000001733 246.0
DYD3_k127_491750_2 Vitamin K-dependent gamma-carboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000005727 239.0
DYD3_k127_491750_3 IMG reference gene - - - 0.00000000000000000000000000000000000000000000000000000000402 211.0
DYD3_k127_491750_4 IMG reference gene - - - 0.0000000000000000000000000000007182 128.0
DYD3_k127_4937892_0 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 362.0
DYD3_k127_4937892_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002232 254.0
DYD3_k127_4937892_2 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270,K21749 - 2.7.7.43,2.7.7.92,3.1.3.45 0.00000000000000000000000000000000000000000000214 170.0
DYD3_k127_4937892_3 SIS domain K06041 - 5.3.1.13 0.000000000000000000000000000000000000000001145 163.0
DYD3_k127_4937892_4 - - - - 0.00000000002165 66.0
DYD3_k127_4960323_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 570.0
DYD3_k127_4960323_1 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000000001094 125.0
DYD3_k127_4960323_2 - - - - 0.00000006589 58.0
DYD3_k127_4966664_0 gliding motility-associated lipoprotein GldJ - - - 4.154e-209 660.0
DYD3_k127_4966664_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636 449.0
DYD3_k127_4966664_2 OmpA MotB domain protein K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 398.0
DYD3_k127_4966664_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006108 376.0
DYD3_k127_4966664_4 Mur ligase family, catalytic domain K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 369.0
DYD3_k127_4966664_5 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000001011 241.0
DYD3_k127_4966664_6 Belongs to the arginase family K01479 - 3.5.3.8 0.00000000000000000000000000000000003886 147.0
DYD3_k127_499276_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 2.245e-291 912.0
DYD3_k127_499276_1 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000839 93.0
DYD3_k127_5011627_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005607 506.0
DYD3_k127_5011627_1 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005918 502.0
DYD3_k127_5011627_2 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000001583 175.0
DYD3_k127_5011627_3 Chloramphenicol acetyltransferase K19271 - 2.3.1.28 0.000000000000000000000000000000000000000000005305 171.0
DYD3_k127_5018981_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1051.0
DYD3_k127_5019845_0 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000006533 221.0
DYD3_k127_5019845_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000343 212.0
DYD3_k127_5019845_2 histidine kinase dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000005018 194.0
DYD3_k127_5019845_3 COG3209 Rhs family protein - - - 0.000000000000000018 97.0
DYD3_k127_5025233_0 BNR Asp-box repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000869 502.0
DYD3_k127_5025233_1 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000004928 234.0
DYD3_k127_5025233_2 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000003085 194.0
DYD3_k127_5025233_3 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000001735 166.0
DYD3_k127_5045723_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 2.863e-204 638.0
DYD3_k127_5045723_1 Phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 434.0
DYD3_k127_5045723_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008214 366.0
DYD3_k127_5045723_3 chlorophyll binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009931 283.0
DYD3_k127_5045723_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000003949 188.0
DYD3_k127_5045723_5 chlorophyll binding - - - 0.00000000000000000000000000000000000001588 153.0
DYD3_k127_5045723_6 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000002557 82.0
DYD3_k127_5046389_0 Putative serine dehydratase domain K20757 - 4.3.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 368.0
DYD3_k127_5046389_1 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006679 277.0
DYD3_k127_5046389_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000001916 248.0
DYD3_k127_5046389_3 COG1705 Muramidase (flagellum-specific) - - - 0.00000000000000000000000000000000000000000000000000003656 192.0
DYD3_k127_5046389_4 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000009389 110.0
DYD3_k127_5054408_0 ASPIC and UnbV - - - 4.274e-235 755.0
DYD3_k127_5054408_1 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007248 397.0
DYD3_k127_5054408_2 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.000000000000000000001925 96.0
DYD3_k127_5107513_0 Tetratricopeptide repeat - - - 5.979e-223 704.0
DYD3_k127_5107513_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102,K11103 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 523.0
DYD3_k127_5107513_2 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008494 436.0
DYD3_k127_5116474_0 Valyl tRNA synthetase tRNA binding arm K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007918 507.0
DYD3_k127_5116474_1 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 386.0
DYD3_k127_5116474_2 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007986 248.0
DYD3_k127_5116474_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002623 251.0
DYD3_k127_5116474_4 8-amino-7-oxononanoate synthase - - - 0.000000000000000000000000000000000000000000000000000000003508 214.0
DYD3_k127_5138309_0 PFAM Cytochrome c assembly protein K02198 - - 2.306e-207 660.0
DYD3_k127_5138309_1 ABC transporter, ATP-binding protein K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000001499 233.0
DYD3_k127_5138309_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000004382 130.0
DYD3_k127_5138309_3 SnoaL-like domain - - - 0.000000000000000000000000000001287 127.0
DYD3_k127_5185554_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008296 472.0
DYD3_k127_5185554_1 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 354.0
DYD3_k127_5185554_2 Caspase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007696 337.0
DYD3_k127_5185554_3 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006969 291.0
DYD3_k127_5185554_4 SERine Proteinase INhibitors K13963 - - 0.0000000000000000000000000000000000000000000000000000005575 208.0
DYD3_k127_5185554_5 Domain of unknown function (DUF4294) - - - 0.000000000000000000000000000000000000000000001398 172.0
DYD3_k127_5185554_6 Belongs to the ompA family - - - 0.0000000000000000000001446 115.0
DYD3_k127_5185554_7 cellulose binding - - - 0.0000003629 57.0
DYD3_k127_5185554_8 Subtilase family - - - 0.0000562 55.0
DYD3_k127_5185554_9 diphosphomevalonate decarboxylase K01597 - 4.1.1.33 0.00006711 46.0
DYD3_k127_5189939_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 548.0
DYD3_k127_5189939_1 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 346.0
DYD3_k127_5189939_2 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 324.0
DYD3_k127_5189939_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005003 311.0
DYD3_k127_5189939_4 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000005 214.0
DYD3_k127_5189939_5 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000001477 202.0
DYD3_k127_5189939_6 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000006514 191.0
DYD3_k127_5189939_7 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000001604 184.0
DYD3_k127_5189939_8 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.00000000000000000000000000000000001095 136.0
DYD3_k127_5189939_9 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000001251 71.0
DYD3_k127_5191318_0 Aldolase K11645 - 4.1.2.13 4.854e-208 649.0
DYD3_k127_5191318_1 CRP FNR family transcriptional regulator K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007273 335.0
DYD3_k127_5191318_2 OsmC-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000002938 221.0
DYD3_k127_5191318_3 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000006166 163.0
DYD3_k127_5191318_4 PFAM Rhodanese-like domain - - - 0.000000000000000000000000000000000000001653 150.0
DYD3_k127_5191318_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000001153 141.0
DYD3_k127_5191318_6 Protein of unknown function (DUF2892) - - - 0.000000000000001376 79.0
DYD3_k127_5213791_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009681 415.0
DYD3_k127_5213791_1 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001197 265.0
DYD3_k127_5213791_2 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000000000000000001444 224.0
DYD3_k127_5213791_3 Glycosyl transferases group 1 - - - 0.00000000000000000000001133 105.0
DYD3_k127_5213791_4 xyloglucan:xyloglucosyl transferase activity - - - 0.000000000003373 72.0
DYD3_k127_5213791_5 Cytochrome C oxidase, cbb3-type, subunit III K00368,K00405 - 1.7.2.1 0.000000006923 60.0
DYD3_k127_5230974_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1376.0
DYD3_k127_5236461_0 Phosphoglucosamine mutase K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 497.0
DYD3_k127_5236461_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009449 397.0
DYD3_k127_5236461_2 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000007799 214.0
DYD3_k127_5236461_3 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000271 199.0
DYD3_k127_5236461_4 Phosphoesterase PA-phosphatase related K19302 - 3.6.1.27 0.000000000000000000000000000000000000000001327 162.0
DYD3_k127_5236461_5 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000009344 50.0
DYD3_k127_5243491_0 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 508.0
DYD3_k127_5243491_1 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 499.0
DYD3_k127_5261916_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006733 383.0
DYD3_k127_5261916_1 Permease, YjgP YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005457 357.0
DYD3_k127_5261916_2 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.00000000000000000007487 98.0
DYD3_k127_5261916_3 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000000000000002561 95.0
DYD3_k127_5272955_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 420.0
DYD3_k127_5272955_1 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 398.0
DYD3_k127_5272955_10 Endonuclease I - - - 0.00005986 55.0
DYD3_k127_5272955_2 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001619 275.0
DYD3_k127_5272955_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000004481 186.0
DYD3_k127_5272955_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000002163 130.0
DYD3_k127_5272955_5 Domain of unknown function (DUF3817) - GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000000001731 111.0
DYD3_k127_5272955_6 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000003651 93.0
DYD3_k127_5272955_8 - - - - 0.000000008964 59.0
DYD3_k127_5272955_9 Peptide-N-glycosidase F, C terminal - - - 0.000000743 59.0
DYD3_k127_5273757_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 3.723e-281 871.0
DYD3_k127_5273757_1 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 405.0
DYD3_k127_5273757_2 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008168 321.0
DYD3_k127_5273757_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000001816 199.0
DYD3_k127_5273757_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000000000000000000006072 161.0
DYD3_k127_5273757_5 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000000000008939 105.0
DYD3_k127_5273757_6 Protein of unknown function (DUF1573) - - - 0.00000000002873 65.0
DYD3_k127_5297609_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 5.388e-253 795.0
DYD3_k127_5297609_1 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003036 255.0
DYD3_k127_5297609_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000000000000000248 158.0
DYD3_k127_5319562_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005613 571.0
DYD3_k127_5319562_1 glucose-1-phosphate adenylyltransferase K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 534.0
DYD3_k127_5319562_2 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 380.0
DYD3_k127_5319562_3 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 377.0
DYD3_k127_5319562_4 Phage shock protein A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 312.0
DYD3_k127_5319562_5 - - - - 0.0000000000000000000000000000000000476 140.0
DYD3_k127_5319562_6 Universal stress protein - - - 0.0000000000000000000000000000001056 134.0
DYD3_k127_5320458_0 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004202 540.0
DYD3_k127_5320458_1 Belongs to the UbiD family K03182 - 4.1.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007617 506.0
DYD3_k127_5320458_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006094 442.0
DYD3_k127_5320458_3 Oxidoreductase K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006108 271.0
DYD3_k127_5320458_4 COGs COG5616 integral membrane protein - - - 0.0000000000000000000000000000000000000000000001516 191.0
DYD3_k127_5332840_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 1.013e-218 687.0
DYD3_k127_5332840_1 Protein conserved in bacteria K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 303.0
DYD3_k127_5332840_2 PFAM Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000006305 244.0
DYD3_k127_5332840_3 - - - - 0.00000000000000000000000000000000000000000000000000000000001026 218.0
DYD3_k127_5332840_4 - - - - 0.00000000000000000000000000000000000000000000262 167.0
DYD3_k127_5332840_5 Chromatin associated protein KTI12 - - - 0.00000000000000000000000000000000000000005088 156.0
DYD3_k127_5332840_6 - - - - 0.00000000000000000000000000000008277 130.0
DYD3_k127_5332840_7 Domain of unknown function (DUF4111) - - - 0.000000000000000000000000000001241 132.0
DYD3_k127_5354128_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.045e-214 682.0
DYD3_k127_5354128_2 NAD dependent epimerase dehydratase family protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000001088 179.0
DYD3_k127_5374776_0 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000000000000000000002189 207.0
DYD3_k127_5374776_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000004883 152.0
DYD3_k127_5374776_2 Anti-sigma-K factor RskA - - - 0.000000000000000000000002127 112.0
DYD3_k127_5374776_3 YadA-like membrane anchor domain K12342 - - 0.000001881 60.0
DYD3_k127_5382795_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 1.043e-252 787.0
DYD3_k127_5382795_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 2.054e-224 706.0
DYD3_k127_5382795_2 Aminotransferase K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 483.0
DYD3_k127_5382795_3 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000712 291.0
DYD3_k127_5382795_4 leucine binding - - - 0.000000000000000000000000000000000000000000005741 180.0
DYD3_k127_5382795_5 isomerase activity - - - 0.000000000000006782 85.0
DYD3_k127_539274_0 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000305 356.0
DYD3_k127_539274_1 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000001402 228.0
DYD3_k127_539274_2 cytochrome C peroxidase - - - 0.000000000000000000000000000000000000000000000000000000003256 202.0
DYD3_k127_539274_3 metallopeptidase activity K09933 - - 0.000000000000002607 86.0
DYD3_k127_539274_4 - - - - 0.000000008684 56.0
DYD3_k127_539913_0 Belongs to the glycosyl hydrolase 28 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 541.0
DYD3_k127_5400590_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 9.787e-299 938.0
DYD3_k127_5400590_1 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 336.0
DYD3_k127_5400590_2 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 309.0
DYD3_k127_5400590_3 - - - - 0.00000000000000000000000000000000000000000000000000000002432 209.0
DYD3_k127_5400590_4 IMP dehydrogenase activity K04767,K07182 - - 0.000000000000000000000000000000000000000000000001986 178.0
DYD3_k127_5400590_5 CBS domain protein - - - 0.0000000000000008973 83.0
DYD3_k127_5415233_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 355.0
DYD3_k127_5415233_1 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000001611 192.0
DYD3_k127_5415233_2 N-acetylglucosamine kinase - - - 0.0000000000000000000000000000000000000001305 161.0
DYD3_k127_5415233_3 Predicted membrane protein (DUF2207) - - - 0.000000000000000000000000000000000001119 149.0
DYD3_k127_5418444_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 525.0
DYD3_k127_5418444_1 tRNA nucleotidyltransferase K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009714 509.0
DYD3_k127_5418444_2 export protein - - - 0.000000002027 61.0
DYD3_k127_5441237_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 3.661e-210 668.0
DYD3_k127_5441237_1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 507.0
DYD3_k127_5441237_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 490.0
DYD3_k127_5441237_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 351.0
DYD3_k127_5441237_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000005359 255.0
DYD3_k127_5441237_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000004076 174.0
DYD3_k127_5441237_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000002957 140.0
DYD3_k127_5458654_0 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007171 309.0
DYD3_k127_5458654_1 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002949 256.0
DYD3_k127_5458654_2 PFAM Phosphoribosyl transferase domain K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000001069 203.0
DYD3_k127_5458654_3 Protein of unknown function (DUF1572) - - - 0.0000000000000000000000000000000000000000001061 164.0
DYD3_k127_5458654_4 phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000000000000006709 147.0
DYD3_k127_5458654_5 Sodium:solute symporter family K03307 - - 0.0000000000000002711 79.0
DYD3_k127_5458654_6 Sigma-70 region 2 - - - 0.0000000006369 67.0
DYD3_k127_5473775_0 OmpA MotB domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 608.0
DYD3_k127_5473775_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004066 440.0
DYD3_k127_5473775_2 nicotinamide mononucleotide transporter K03811 - - 0.00000000000000000000000000000001946 134.0
DYD3_k127_5473775_3 long-chain fatty acid transporting porin activity K06076 - - 0.000000000002424 74.0
DYD3_k127_5476483_0 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 301.0
DYD3_k127_5476483_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000006553 224.0
DYD3_k127_5476483_2 phenazine biosynthesis protein PhzF family - - - 0.0000000000000000000000000000000001669 134.0
DYD3_k127_5477796_0 FAD linked oxidases, C-terminal domain - - - 4.662e-268 850.0
DYD3_k127_5496130_0 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000008064 214.0
DYD3_k127_5496130_1 PFAM Glycoside hydrolase family 65, central catalytic K00691 - 2.4.1.8 0.0000000000000000000000000000000000000000000000000003108 190.0
DYD3_k127_5496130_2 Histidine kinase - - - 0.00000000000000000000000000000000000000001255 172.0
DYD3_k127_5496130_3 PFAM Glycoside hydrolase family 65, central catalytic K00691 - 2.4.1.8 0.0000000000000000000002483 98.0
DYD3_k127_5504364_0 Heat shock 70 kDa protein K04043 - - 3.941e-312 966.0
DYD3_k127_5504364_1 Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01886 - 6.1.1.18 3.216e-239 750.0
DYD3_k127_5504364_2 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 7.337e-219 694.0
DYD3_k127_5504364_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 420.0
DYD3_k127_5504364_4 - - - - 0.000000000000000000000000000000000000000000000000009947 189.0
DYD3_k127_5504364_5 RNA methyltransferase, RsmD K08316 - 2.1.1.171 0.000000000000000000000000000000000000000000000005737 177.0
DYD3_k127_5504364_6 - - - - 0.000000000000000000000193 104.0
DYD3_k127_5513175_0 Periplasmic component of the Tol biopolymer transport system - - - 2.063e-225 717.0
DYD3_k127_5518108_0 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008164 323.0
DYD3_k127_5518108_1 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000001902 245.0
DYD3_k127_5524126_0 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007325 539.0
DYD3_k127_5524126_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003303 508.0
DYD3_k127_5524126_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003996 461.0
DYD3_k127_5524126_3 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 440.0
DYD3_k127_5524126_5 COG0659 Sulfate permease and related K03321 - - 0.000000000000000000000002342 106.0
DYD3_k127_5524126_6 YtxH-like protein - - - 0.00000000000000015 82.0
DYD3_k127_5532535_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 6.597e-195 615.0
DYD3_k127_5532535_1 TonB-dependent receptor plug domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 344.0
DYD3_k127_5532535_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000001217 220.0
DYD3_k127_5532535_3 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000000000000005616 173.0
DYD3_k127_5549832_0 Concanavalin A-like lectin/glucanases superfamily - - - 0.0 1473.0
DYD3_k127_5549832_1 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002194 287.0
DYD3_k127_5549832_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000005142 222.0
DYD3_k127_5568780_0 Peptidase S46 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 558.0
DYD3_k127_5568780_1 Integral membrane protein (intg_mem_TP0381) - - - 0.0000000000000000000000000000000000002862 148.0
DYD3_k127_5583455_0 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001934 259.0
DYD3_k127_5604384_0 outer membrane assembly lipoprotein YfiO K05807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001466 248.0
DYD3_k127_5604384_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000002305 173.0
DYD3_k127_5604384_2 RNA polymerase - - - 0.00000000000000000000000000000001094 130.0
DYD3_k127_5604384_3 GH3 auxin-responsive promoter - - - 0.00000000000000002986 82.0
DYD3_k127_5626867_0 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 526.0
DYD3_k127_5626867_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002885 255.0
DYD3_k127_5626867_2 Glycogen debranching enzyme - - - 0.000000000000000003764 85.0
DYD3_k127_5626867_3 peptidase - - - 0.00000000000000005566 87.0
DYD3_k127_56548_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 338.0
DYD3_k127_56548_1 phosphorylase K00757 - 2.4.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002319 276.0
DYD3_k127_56548_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001832 235.0
DYD3_k127_56548_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000001377 128.0
DYD3_k127_56548_5 ATPase kinase involved in NAD metabolism - - - 0.000000000000002796 84.0
DYD3_k127_56548_6 PFAM Uncharacterised protein family UPF0150 - - - 0.00003554 49.0
DYD3_k127_5675433_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.886e-198 627.0
DYD3_k127_5675433_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 446.0
DYD3_k127_5675433_2 Phage shock protein A - - - 0.00000000000000000000000000000000000000000000000000000009184 198.0
DYD3_k127_5675433_3 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000001556 154.0
DYD3_k127_5675433_4 secondary active sulfate transmembrane transporter activity - - - 0.00000000000000000000000000000004893 134.0
DYD3_k127_5693473_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000002077 225.0
DYD3_k127_5693473_1 Protein of unknown function (DUF2480) - - - 0.000000000000000000000000000000000000000000000000000007234 194.0
DYD3_k127_5693473_2 O-Antigen ligase - - - 0.000000000000000000000000000000001096 139.0
DYD3_k127_5693473_3 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775,K01929 - 5.1.1.1,6.3.2.10 0.000000000000000000000000000416 119.0
DYD3_k127_571340_0 PFAM ASPIC and UnbV - - - 8.053e-235 755.0
DYD3_k127_571340_1 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 428.0
DYD3_k127_5726421_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1024.0
DYD3_k127_5726421_1 TonB family domain protein - - - 0.0000000000000000000000000000000000000000000000001877 186.0
DYD3_k127_5738195_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1183.0
DYD3_k127_5738195_1 Domain in cystathionine beta-synthase and other proteins. - - - 3.017e-239 751.0
DYD3_k127_5738195_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 6.148e-238 745.0
DYD3_k127_5738195_3 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000003405 154.0
DYD3_k127_5740522_0 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000000248 197.0
DYD3_k127_5740522_1 - - - - 0.0000000000000000000000000000000000000008481 159.0
DYD3_k127_5740522_2 YCII-related domain - - - 0.00000000000000000000000000000000000004853 146.0
DYD3_k127_5740522_3 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000001022 134.0
DYD3_k127_5740522_4 SnoaL-like polyketide cyclase K06893 - - 0.00000000001942 69.0
DYD3_k127_5776439_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006529 436.0
DYD3_k127_5776439_1 Rhodanese Homology Domain K06917 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005975 261.0
DYD3_k127_5776439_2 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000001184 104.0
DYD3_k127_5781532_0 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 425.0
DYD3_k127_5781532_1 Belongs to the PdxA family K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 428.0
DYD3_k127_5781532_2 Belongs to the SEDS family K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 332.0
DYD3_k127_5781532_3 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.000000000000000000000000000000000000000000000000001575 190.0
DYD3_k127_5781532_4 - - - - 0.0000000000000009176 82.0
DYD3_k127_5782512_0 Peptidase S9, prolyl oligopeptidase, catalytic domain K01354 - 3.4.21.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 564.0
DYD3_k127_5782512_1 Amidinotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 310.0
DYD3_k127_5782512_2 Domain of unknown function (DUF4918) - - - 0.000000000000000000000000000000000000000000000000000000000000000000002201 241.0
DYD3_k127_5782512_3 pilus organization - - - 0.00000000000000000000000000000000000009367 150.0
DYD3_k127_581150_0 Thiol-activated cytolysin K11031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 434.0
DYD3_k127_581150_1 Cytochrome c - - - 0.000000000000000000000000001257 114.0
DYD3_k127_581150_2 Transposase IS200 like - - - 0.00000000000003556 76.0
DYD3_k127_581150_3 Transposase IS200 like - - - 0.000000001159 59.0
DYD3_k127_5842409_0 peptidase M1 - - - 1.232e-220 696.0
DYD3_k127_5842409_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 286.0
DYD3_k127_5842409_2 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000004185 192.0
DYD3_k127_5842409_3 Hexapeptide repeat of succinyl-transferase - - - 0.00000462 48.0
DYD3_k127_5857631_0 RNA polymerase, sigma-54 factor K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 529.0
DYD3_k127_5857631_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 422.0
DYD3_k127_5857631_2 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001667 290.0
DYD3_k127_5857631_3 penicillin-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008444 265.0
DYD3_k127_5857631_4 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000001471 164.0
DYD3_k127_5857631_5 MORN repeat variant - - - 0.00000000000000000000000000000000000002927 151.0
DYD3_k127_5905791_0 PFAM TonB-dependent Receptor Plug - - - 4.837e-200 650.0
DYD3_k127_5905791_1 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006295 328.0
DYD3_k127_5905791_2 Redoxin - - - 0.000000000000000000000000000001583 141.0
DYD3_k127_5967629_0 Permease for cytosine/purines, uracil, thiamine, allantoin K03457 - - 1.254e-238 744.0
DYD3_k127_5967629_1 MafB19-like deaminase K01485 - 3.5.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000005314 247.0
DYD3_k127_5967629_2 TIGRFAM dihydroorotase, multifunctional complex type K01464 - 3.5.2.2 0.000000000000000000000000000000000000647 141.0
DYD3_k127_5982302_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 638.0
DYD3_k127_5982302_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 426.0
DYD3_k127_5982302_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 326.0
DYD3_k127_5982302_3 TIGRFAM A G-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008107 295.0
DYD3_k127_5982302_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000001169 237.0
DYD3_k127_5982302_5 - - - - 0.0000000000000000000000000000000000000000000000000003027 194.0
DYD3_k127_5982302_6 extracellular polysaccharide biosynthetic process K07011 - - 0.0000000000000000000000000000000000000008737 161.0
DYD3_k127_5982302_7 diphosphomevalonate decarboxylase K01597 - 4.1.1.33 0.0000000000000000001616 89.0
DYD3_k127_5987214_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 446.0
DYD3_k127_5987214_1 - catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - 0.00000000000000000000000000000000000000000000000000009432 194.0
DYD3_k127_5987214_2 tRNA nucleotidyltransferase K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000001115 131.0
DYD3_k127_5987214_3 Domain of unknown function (DUF4249) - - - 0.0000000000000000003115 98.0
DYD3_k127_600916_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1027.0
DYD3_k127_600916_1 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000006537 237.0
DYD3_k127_600916_2 uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000002514 205.0
DYD3_k127_600916_3 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000002138 195.0
DYD3_k127_600916_4 - - - - 0.000008002 54.0
DYD3_k127_6017233_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 1.951e-263 836.0
DYD3_k127_6017233_1 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 374.0
DYD3_k127_6017233_2 Tyrosine recombinase XerC K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007958 340.0
DYD3_k127_6017233_3 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006328 295.0
DYD3_k127_6017233_4 Gaf domain - - - 0.00002997 47.0
DYD3_k127_6019434_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 478.0
DYD3_k127_6019434_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005896 394.0
DYD3_k127_6019434_2 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 282.0
DYD3_k127_6019434_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000001841 182.0
DYD3_k127_6019434_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000001024 127.0
DYD3_k127_6019434_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000004905 82.0
DYD3_k127_6056107_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 556.0
DYD3_k127_6056107_1 involved in cell wall biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 383.0
DYD3_k127_6056107_2 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006757 304.0
DYD3_k127_6056107_3 Participates in the control of copper homeostasis K06201 - - 0.000000000000000000000000000003082 127.0
DYD3_k127_6056107_4 - - - - 0.000000000001993 68.0
DYD3_k127_6066102_0 PFAM FecR protein - - - 0.000000000000000000000000000000000000000000000000000005019 201.0
DYD3_k127_6066102_1 PFAM TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000003459 156.0
DYD3_k127_6066102_2 Pregnancy-associated plasma protein-A - - - 0.00000000000000000000006573 115.0
DYD3_k127_6066102_3 - - - - 0.0000000000000000003432 89.0
DYD3_k127_6071747_0 PFAM Dynamin family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004616 509.0
DYD3_k127_6071747_1 WbqC-like protein family - - - 0.0000000000000000000000000007012 121.0
DYD3_k127_6071747_2 Glycosyl transferase family 2 - - - 0.00000000000000005506 85.0
DYD3_k127_6097867_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 504.0
DYD3_k127_6097867_1 PFAM peptidase M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004879 420.0
DYD3_k127_6097867_2 translation initiation factor activity K06996 - - 0.00000000000000000000000000000000000001576 147.0
DYD3_k127_6122253_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 567.0
DYD3_k127_6122253_1 amidohydrolase K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 418.0
DYD3_k127_6122253_2 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000005095 81.0
DYD3_k127_6122253_3 PFAM Glycosyl transferase family 2 - - - 0.0000000000003898 74.0
DYD3_k127_6129442_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 593.0
DYD3_k127_6129442_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 316.0
DYD3_k127_6129442_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00005664 47.0
DYD3_k127_613033_0 chlorophyll binding K03640 - - 5.133e-213 693.0
DYD3_k127_613033_1 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007218 505.0
DYD3_k127_6132220_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 1.051e-206 655.0
DYD3_k127_6132220_1 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 405.0
DYD3_k127_6132220_2 metallocarboxypeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000001339 241.0
DYD3_k127_6132220_3 GGDEF domain K03413,K07814 - - 0.000000000000000000000000000000000107 151.0
DYD3_k127_6145678_0 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 533.0
DYD3_k127_6145678_1 Glycosyl hydrolase family 65, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005633 469.0
DYD3_k127_6147285_0 fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 455.0
DYD3_k127_6147285_1 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 386.0
DYD3_k127_6147285_2 Pfam Sodium hydrogen exchanger - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 353.0
DYD3_k127_6147285_3 AsmA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 324.0
DYD3_k127_6147285_4 Protein of unknown function (DUF1579) - - - 0.000000000000000000000000000000000000000000000000000009621 196.0
DYD3_k127_6147285_5 - - - - 0.000000000000000000000000000007229 122.0
DYD3_k127_6162281_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1041.0
DYD3_k127_6162281_1 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008621 261.0
DYD3_k127_6162281_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000002585 254.0
DYD3_k127_6162281_3 phosphodiesterase - - - 0.0000000001826 66.0
DYD3_k127_6183257_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.0 1270.0
DYD3_k127_6183257_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 1.266e-215 674.0
DYD3_k127_6183257_2 Sodium:solute symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 582.0
DYD3_k127_6183257_3 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 438.0
DYD3_k127_6183257_4 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003401 278.0
DYD3_k127_6183257_5 photosynthesis - - - 0.000000000000000000000000000000000000000000000000004064 189.0
DYD3_k127_6183257_6 endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000001001 164.0
DYD3_k127_6183257_7 acr, cog1399 - - - 0.0000000000000000000001906 106.0
DYD3_k127_6183257_8 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000016 86.0
DYD3_k127_6183257_9 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000006399 61.0
DYD3_k127_6190353_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 2.985e-210 679.0
DYD3_k127_6190353_1 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006726 529.0
DYD3_k127_6190353_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 408.0
DYD3_k127_6190353_3 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 404.0
DYD3_k127_6190353_4 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 330.0
DYD3_k127_6190353_5 Ribonuclease H-like K09776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009668 241.0
DYD3_k127_6190353_7 Beta-lactamase - - - 0.00000000001292 71.0
DYD3_k127_6223045_0 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 363.0
DYD3_k127_6223045_1 Domain of unknown function (DUF1736) - - - 0.00000000000000000000000000003056 126.0
DYD3_k127_6223045_2 Photosynthesis system II assembly factor YCF48 - - - 0.000000000000000000000001745 119.0
DYD3_k127_6223045_3 - - - - 0.0000000000000000362 91.0
DYD3_k127_6223045_4 Subtilase family - - - 0.000003954 59.0
DYD3_k127_6232334_0 fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 310.0
DYD3_k127_6232334_1 - - - - 0.0000000000000000000000000000000000000000000009051 171.0
DYD3_k127_6232334_2 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0000000000000000000000000000000000000111 146.0
DYD3_k127_6232334_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000003124 134.0
DYD3_k127_6232334_4 - - - - 0.000000001624 72.0
DYD3_k127_6232334_5 - - - - 0.0000007962 60.0
DYD3_k127_6256508_0 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007466 259.0
DYD3_k127_6256508_1 acr, cog1993 K06199,K09137 - - 0.0000000000000000000000000000000000000001197 153.0
DYD3_k127_6256508_2 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000000000000000000001035 128.0
DYD3_k127_6258591_0 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 475.0
DYD3_k127_6258591_1 PFAM Fatty acid desaturase K00508 - 1.14.19.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 357.0
DYD3_k127_6258591_2 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 342.0
DYD3_k127_6258591_3 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000323 256.0
DYD3_k127_6258591_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000794 218.0
DYD3_k127_6258591_5 SnoaL-like domain - - - 0.000000000000000000000000000000003267 133.0
DYD3_k127_6258591_6 glyoxalase III activity - - - 0.000000000000001411 82.0
DYD3_k127_6282145_0 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 466.0
DYD3_k127_6282145_1 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005162 323.0
DYD3_k127_6282145_2 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) K05844 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016874,GO:0016879,GO:0016881,GO:0018169,GO:0018410,GO:0019538,GO:0031668,GO:0033554,GO:0036211,GO:0042802,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070739,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 300.0
DYD3_k127_6282145_3 - - - - 0.000000000000005091 80.0
DYD3_k127_6282905_0 peptidase M42 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 510.0
DYD3_k127_6282905_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 343.0
DYD3_k127_6282905_2 deoxynucleoside kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 327.0
DYD3_k127_6282905_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762,K13421 - 2.4.2.10,4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000006055 241.0
DYD3_k127_6282905_4 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000003022 219.0
DYD3_k127_6282905_5 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000001405 204.0
DYD3_k127_6282905_6 Belongs to the Nudix hydrolase family - - - 0.000000000000000000000000000000000000000001818 164.0
DYD3_k127_6282905_7 - - - - 0.000000000000000000000000000000000001337 145.0
DYD3_k127_6282905_8 PFAM UbiA prenyltransferase family - - - 0.000001989 54.0
DYD3_k127_6286117_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0 1260.0
DYD3_k127_6286117_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 550.0
DYD3_k127_628741_0 Two component regulator three Y - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 321.0
DYD3_k127_628741_1 response regulator - - - 0.000000000000000000000005111 110.0
DYD3_k127_6287583_0 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004892 395.0
DYD3_k127_6287583_1 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004847 321.0
DYD3_k127_6287583_2 Phosphoesterase K07095 - - 0.00000000000000000000000000000000000000000000000000000005321 200.0
DYD3_k127_6287583_3 isomerase activity - - - 0.0000000000000000000000000000000002299 151.0
DYD3_k127_6307888_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.981e-290 898.0
DYD3_k127_6307888_1 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005963 491.0
DYD3_k127_6307888_2 COGs COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003728 419.0
DYD3_k127_6307888_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 313.0
DYD3_k127_6307888_4 Reeler domain - - - 0.0000000000001066 81.0
DYD3_k127_6307888_5 - - - - 0.0001975 48.0
DYD3_k127_6345475_0 Bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009367 360.0
DYD3_k127_6345475_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003429 334.0
DYD3_k127_6345475_2 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 315.0
DYD3_k127_6345475_3 spore germination - - - 0.000000000000000000000000000000000000005703 152.0
DYD3_k127_6345475_4 Tetratricopeptide repeat - - - 0.00005211 56.0
DYD3_k127_6384787_0 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 474.0
DYD3_k127_6425163_0 COG0308 Aminopeptidase N - - - 2.69e-272 851.0
DYD3_k127_6425163_1 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008285 444.0
DYD3_k127_6425163_2 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 410.0
DYD3_k127_6425163_3 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 389.0
DYD3_k127_6425163_4 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000931 349.0
DYD3_k127_6425163_5 beta-1,4-mannooligosaccharide phosphorylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 350.0
DYD3_k127_6425163_6 Highly conserved protein containing a thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 341.0
DYD3_k127_6425163_7 AraC type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 332.0
DYD3_k127_6425163_8 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 300.0
DYD3_k127_6425163_9 Aminopeptidase N - - - 0.00000002635 55.0
DYD3_k127_6437375_0 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008622 549.0
DYD3_k127_6437375_1 COG2373 Large extracellular alpha-helical protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 400.0
DYD3_k127_6437375_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 374.0
DYD3_k127_6437375_3 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 304.0
DYD3_k127_6437375_4 Domain of unknown function (DUF697) - - - 0.000000000000000000000000000000000000000000000000000000000000000002053 233.0
DYD3_k127_6437375_5 FtsX-like permease family K09811 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.000000000000000000000002434 113.0
DYD3_k127_6481636_0 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 613.0
DYD3_k127_6481636_1 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008765 452.0
DYD3_k127_6481636_2 protein conserved in bacteria (DUF2179) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 396.0
DYD3_k127_6481636_3 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 306.0
DYD3_k127_6481636_4 uracil phosphoribosyltransferase K00761 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000006582 267.0
DYD3_k127_6481636_5 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000834 259.0
DYD3_k127_6481636_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001601 233.0
DYD3_k127_6481636_7 PFAM Receptor L domain - - - 0.0000000000000000000000000000000000000001693 168.0
DYD3_k127_6481636_8 TIGRFAM TIGR02757 family protein - - - 0.00000000000000001188 83.0
DYD3_k127_6488174_0 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007727 391.0
DYD3_k127_6488174_1 Single-stranded DNA-binding protein K03111 - - 0.000000000000000000000000000000000000000000000001257 179.0
DYD3_k127_6488174_2 TIGRFAM gliding motility-associated lipoprotein GldD - - - 0.0000000000000000000000000000000000000000000007922 172.0
DYD3_k127_6488174_3 Signal peptide protein - - - 0.000000000000000000000000000000000000001237 154.0
DYD3_k127_6488174_4 Bacterial PH domain K08981 - - 0.000003686 51.0
DYD3_k127_6499467_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 554.0
DYD3_k127_6499467_1 Protein of unknown function (DUF2851) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 377.0
DYD3_k127_6499467_2 shape-determining protein MreC K03570 - - 0.000000000000000000000000000000000000000000000000000000213 203.0
DYD3_k127_6499467_3 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000000000000000005665 174.0
DYD3_k127_6499467_4 Cell shape determining protein MreB Mrl K03569 - - 0.0000000000000000000000000000000008951 130.0
DYD3_k127_6499467_5 rod shape-determining protein MreD - - - 0.000000000000000001214 92.0
DYD3_k127_6504655_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 2.246e-238 742.0
DYD3_k127_6504655_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008949 263.0
DYD3_k127_6504655_2 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000000002652 173.0
DYD3_k127_6504655_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000002038 108.0
DYD3_k127_6513562_0 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02622 - - 3.891e-226 711.0
DYD3_k127_6513562_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000001085 171.0
DYD3_k127_6513562_2 Metal ABC transporter ATPase K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000002057 128.0
DYD3_k127_6513562_4 Carboxypeptidase regulatory-like domain - - - 0.000000000001844 79.0
DYD3_k127_6519942_0 regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000000003139 146.0
DYD3_k127_6519942_1 PFAM blue (type 1) copper domain protein - - - 0.00000000000007427 82.0
DYD3_k127_6519942_2 Pectate lyase - - - 0.00000000003638 74.0
DYD3_k127_6521405_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.543e-251 782.0
DYD3_k127_6521405_1 2-methylthioadenine synthetase K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 559.0
DYD3_k127_6521405_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005358 510.0
DYD3_k127_6521405_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005934 299.0
DYD3_k127_6521405_4 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003975 249.0
DYD3_k127_6521405_5 Uroporphyrin-iii c tetrapyrrole (Corrin porphyrin) methyltransferase K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000001703 234.0
DYD3_k127_6521405_6 PFAM Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000002402 163.0
DYD3_k127_6521405_7 ATP synthase K02114 - - 0.000000000000000001621 87.0
DYD3_k127_6521405_8 Lysine exporter protein (Lyse ygga) - - - 0.0000002048 57.0
DYD3_k127_6533333_0 Transport of potassium into the cell K03549 - - 1.634e-196 631.0
DYD3_k127_6533333_1 Protein of unknown function (DUF2652) - - - 0.0000000000000000000000000000000000000000000000000000000000000003448 234.0
DYD3_k127_6533333_2 ankyrin repeats - - - 0.0000000000000000000000000000000000000000000000000000001895 199.0
DYD3_k127_6533944_0 Glucosamine-6-phosphate K02564 - 3.5.99.6 3.436e-310 959.0
DYD3_k127_6533944_1 PFAM Formylglycine-generating sulfatase enzyme - - - 1.287e-197 621.0
DYD3_k127_6533944_2 Gliding motility-associated protein GldM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 426.0
DYD3_k127_6533944_3 TIGRFAM gliding motility associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005234 297.0
DYD3_k127_6533944_4 TIGRFAM gliding motility-associated protein GldL - - - 0.0000000000000000000000000000000000000000000000000000001097 204.0
DYD3_k127_6555828_0 Sucrose synthase K00696 - 2.4.1.14 0.0 1089.0
DYD3_k127_6555828_1 Glycosyl hydrolases family 32 N-terminal domain K01193 - 3.2.1.26 2.177e-249 777.0
DYD3_k127_6555828_2 Psort location Cytoplasmic, score 8.96 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 556.0
DYD3_k127_6555828_3 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007054 478.0
DYD3_k127_6555828_4 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000001743 136.0
DYD3_k127_6555828_5 Chaperone of endosialidase - - - 0.00000000000001821 86.0
DYD3_k127_6555828_6 Tetratricopeptide repeat - - - 0.00000000001595 72.0
DYD3_k127_6555828_7 phosphorelay signal transduction system K03413,K21993 - - 0.00004319 48.0
DYD3_k127_6561471_0 TonB dependent receptor - - - 2.875e-204 659.0
DYD3_k127_6561471_1 Lamin Tail Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007105 293.0
DYD3_k127_6561471_2 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000395 114.0
DYD3_k127_6561471_3 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0000000000000000000001334 101.0
DYD3_k127_6569619_0 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 539.0
DYD3_k127_6569619_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 305.0
DYD3_k127_6569619_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 309.0
DYD3_k127_6569619_3 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000001741 243.0
DYD3_k127_6569619_4 transcriptional regulator - - - 0.00001877 57.0
DYD3_k127_6578841_0 lysine biosynthetic process via aminoadipic acid - - - 1.565e-237 747.0
DYD3_k127_6578841_1 Aldehyde K13877,K14519 - 1.2.1.26,1.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 475.0
DYD3_k127_6578841_2 COG0656 Aldo keto reductases, related to diketogulonate reductase K06222 - 1.1.1.346 0.000000000000000000000000000000000000000000000000000000000000000000000004459 252.0
DYD3_k127_6578841_3 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000002884 191.0
DYD3_k127_6578841_4 unfolded protein binding - - - 0.0000000000000000000000000000000000000000000191 164.0
DYD3_k127_6578841_5 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000003847 151.0
DYD3_k127_6578841_6 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.000000000000000000000000000000000000009714 153.0
DYD3_k127_6586563_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 516.0
DYD3_k127_6586563_1 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 457.0
DYD3_k127_6604362_0 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001294 274.0
DYD3_k127_6604362_1 Oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006263 267.0
DYD3_k127_6604362_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000008958 242.0
DYD3_k127_6634910_0 PFAM Peptidase M16 inactive domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 578.0
DYD3_k127_6634910_1 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 345.0
DYD3_k127_6634910_2 Peptidase M16 inactive domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005665 263.0
DYD3_k127_6634910_3 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000000000000000002471 183.0
DYD3_k127_6634910_4 5'-nucleotidase K01081 - 3.1.3.5 0.000000000000000000000000000000000000000000009422 172.0
DYD3_k127_6634910_5 - - - - 0.0000000000000000000000005272 110.0
DYD3_k127_6706475_0 Oxidoreductase domain protein - - - 1.664e-196 619.0
DYD3_k127_6706475_1 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 554.0
DYD3_k127_6706475_2 PFAM nucleoside H symporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 546.0
DYD3_k127_6706475_3 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000001083 217.0
DYD3_k127_6706475_4 DinB superfamily - - - 0.00000000000000000231 92.0
DYD3_k127_6706475_5 Belongs to the peptidase S8 family - - - 0.0000004986 51.0
DYD3_k127_6706475_6 - - - - 0.00005906 52.0
DYD3_k127_67278_0 Amidohydrolase family - - - 4.375e-194 622.0
DYD3_k127_67278_1 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000001687 270.0
DYD3_k127_67278_2 Zinc metalloprotease (Elastase) K01186 - 3.2.1.18 0.000000001185 64.0
DYD3_k127_6760845_0 M6 family metalloprotease domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 578.0
DYD3_k127_6760845_1 Glutaminase K01425 - 3.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 409.0
DYD3_k127_6760845_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 293.0
DYD3_k127_6760845_3 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009482 252.0
DYD3_k127_6760845_4 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000001283 254.0
DYD3_k127_6760845_5 Outer membrane protein beta-barrel domain - - - 0.000000000002958 74.0
DYD3_k127_6760845_6 Domain of unknown function (DUF1772) - - - 0.00001613 53.0
DYD3_k127_6760845_7 TonB-dependent receptor - - - 0.00002161 46.0
DYD3_k127_6768584_0 Peptidase family M48 - - - 0.000000000003202 77.0
DYD3_k127_6769651_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 4e-323 1001.0
DYD3_k127_6769651_1 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003688 351.0
DYD3_k127_6769651_2 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 355.0
DYD3_k127_6769651_3 - - - - 0.000000000000000000000000000000000000000000000000000408 189.0
DYD3_k127_6769651_4 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000006792 171.0
DYD3_k127_682722_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.0 1008.0
DYD3_k127_682722_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005633 533.0
DYD3_k127_682722_2 Quinol cytochrome c oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 491.0
DYD3_k127_682722_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000002609 254.0
DYD3_k127_682722_4 cytochrome C - - - 0.00000000000000000000000000000000000000000000000000000000000002743 221.0
DYD3_k127_6850901_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 8.519e-198 623.0
DYD3_k127_6850901_1 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009975 314.0
DYD3_k127_6850901_2 Flagellar biosynthesis type III secretory pathway K02409 - - 0.000001036 51.0
DYD3_k127_6852829_0 C-terminal domain of CHU protein family - - - 1.192e-270 859.0
DYD3_k127_6852829_1 Riboflavin synthase K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000001317 206.0
DYD3_k127_6852829_2 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000214 143.0
DYD3_k127_6852829_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000001908 89.0
DYD3_k127_6856721_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 351.0
DYD3_k127_6856721_1 drug metabolite-transporting permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004095 288.0
DYD3_k127_6856721_2 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000007415 154.0
DYD3_k127_6856721_3 Alkylphosphonate utilization operon protein phna K06193 - - 0.00000000000000000000003926 100.0
DYD3_k127_6856721_4 membrane-bound metal-dependent K07038 - - 0.0000000548 59.0
DYD3_k127_6861714_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001019 292.0
DYD3_k127_6861714_1 epimerase K07071 - - 0.00000000000000000000000000000000000000000000342 172.0
DYD3_k127_6862843_0 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 392.0
DYD3_k127_6862843_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 372.0
DYD3_k127_6862843_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 343.0
DYD3_k127_6862843_3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000795 233.0
DYD3_k127_6862843_6 Glycosyltransferase like family 2 - - - 0.0000003625 52.0
DYD3_k127_6878195_0 histidine kinase-, DNA gyrase B - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 431.0
DYD3_k127_6878195_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 340.0
DYD3_k127_6878195_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 323.0
DYD3_k127_6878195_3 PFAM Response regulator receiver domain - - - 0.00000001816 65.0
DYD3_k127_6878195_4 Opacity family porin protein K07275 - - 0.0000006513 60.0
DYD3_k127_6878195_5 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 0.000006202 54.0
DYD3_k127_6905758_0 Alpha amylase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008753 494.0
DYD3_k127_6905758_1 Pseudouridine synthase K06179,K06180 - 5.4.99.23,5.4.99.24 0.000000000000000000000000000000000000000000001994 173.0
DYD3_k127_6905758_2 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000232 122.0
DYD3_k127_6909331_0 NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000884 527.0
DYD3_k127_6909331_1 export protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 515.0
DYD3_k127_6909331_2 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000003997 162.0
DYD3_k127_6909331_3 - - - - 0.0000000000000000000000000000000001804 138.0
DYD3_k127_6911014_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 413.0
DYD3_k127_6911014_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000002561 154.0
DYD3_k127_6911014_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000005154 125.0
DYD3_k127_6933745_0 E1-E2 ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 1.736e-313 977.0
DYD3_k127_6933745_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006371 569.0
DYD3_k127_6933745_10 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000006658 216.0
DYD3_k127_6933745_11 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000005806 197.0
DYD3_k127_6933745_12 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000000004391 188.0
DYD3_k127_6933745_13 - K03624 - - 0.0000000000000000000009198 102.0
DYD3_k127_6933745_14 GCN5-related N-acetyl-transferase K06975 - - 0.0000000000000002405 82.0
DYD3_k127_6933745_2 Protein of unknown function (DUF3641) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 527.0
DYD3_k127_6933745_3 COG1055 Na H antiporter NhaD and related arsenite - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045 480.0
DYD3_k127_6933745_4 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 422.0
DYD3_k127_6933745_5 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 404.0
DYD3_k127_6933745_6 permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 393.0
DYD3_k127_6933745_7 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006264 383.0
DYD3_k127_6933745_8 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001197 265.0
DYD3_k127_6933745_9 Glycosyltransferase family 36 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004059 252.0
DYD3_k127_6942943_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 549.0
DYD3_k127_6942943_1 Mg2 transporter protein, CorA family protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 404.0
DYD3_k127_6942943_2 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007048 395.0
DYD3_k127_6942943_3 Glyoxalase K04750 - - 0.0000000000000000000000000000000000000000000000000000000000000601 216.0
DYD3_k127_6942943_4 - - - - 0.00000000000000000000000697 109.0
DYD3_k127_6943028_0 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 545.0
DYD3_k127_6943028_1 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 346.0
DYD3_k127_6944331_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 1.686e-212 666.0
DYD3_k127_6944331_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 513.0
DYD3_k127_6944331_2 ligase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005381 304.0
DYD3_k127_6944331_3 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000001555 183.0
DYD3_k127_6944331_4 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000008934 172.0
DYD3_k127_6944331_5 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000001008 160.0
DYD3_k127_6944331_6 FtsZ-dependent cytokinesis - - - 0.000000000000000000001281 106.0
DYD3_k127_6944331_7 LysE type translocator - - - 0.000000000000000003932 92.0
DYD3_k127_6959369_0 Superfamily I DNA and RNA K10742 - 3.6.4.12 3.294e-213 702.0
DYD3_k127_6959369_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 565.0
DYD3_k127_6959369_2 WG containing repeat - - - 0.000000000000000000000000000004988 132.0
DYD3_k127_6959369_3 Bacterial protein of unknown function (DUF937) - - - 0.00000005905 63.0
DYD3_k127_6984967_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 434.0
DYD3_k127_6984967_1 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 402.0
DYD3_k127_6984967_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 381.0
DYD3_k127_6984967_3 Permease, YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000855 342.0
DYD3_k127_6984967_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000004691 75.0
DYD3_k127_6988381_0 Homoserine dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001882 278.0
DYD3_k127_6988381_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006855 279.0
DYD3_k127_6988381_2 - - - - 0.00000000000000000000000000000000000000000005523 168.0
DYD3_k127_6988381_3 - - - - 0.00000000000000306 75.0
DYD3_k127_7005827_0 Purple acid Phosphatase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006719 627.0
DYD3_k127_7005827_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008624 327.0
DYD3_k127_7005827_2 Sigma-70, region 4 - - - 0.000000000000000000000000000000001466 139.0
DYD3_k127_7005827_3 HRDC domain - - - 0.000000000000000000000000000000002639 133.0
DYD3_k127_7005827_4 - - - - 0.0000000000000000001511 97.0
DYD3_k127_7005827_5 - - - - 0.00000000000000001333 89.0
DYD3_k127_7005827_6 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.00000002754 67.0
DYD3_k127_7005827_7 - - - - 0.00000006601 63.0
DYD3_k127_7042196_0 COG0659 Sulfate permease and related K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009371 563.0
DYD3_k127_7042196_1 Domain of Unknown Function (DUF326) - - - 0.0000000000000000000000000000000000000000000905 161.0
DYD3_k127_7042196_2 PFAM Uncharacterised protein family UPF0118 - - - 0.00000000000000000002763 95.0
DYD3_k127_7042196_3 - - - - 0.0000000007311 63.0
DYD3_k127_7042196_4 Psort location Cytoplasmic, score K07133 - - 0.000003056 49.0
DYD3_k127_7042196_5 protein related to plant photosystem II stability assembly factor - - - 0.0009519 51.0
DYD3_k127_7049016_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1379.0
DYD3_k127_7049016_1 Bacterial PH domain K08981 - - 0.00000000000000000000000000000000000000000000000000000000000001149 229.0
DYD3_k127_7049016_2 Bacterial PH domain K09167 - - 0.00000000000000000000000001383 116.0
DYD3_k127_7051354_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 2.019e-210 667.0
DYD3_k127_7051354_1 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000006643 226.0
DYD3_k127_7056437_1 C-terminal domain of CHU protein family - - - 0.0000000000000000000002483 114.0
DYD3_k127_7076306_0 Sortilin, neurotensin receptor 3, - - - 0.0 1054.0
DYD3_k127_7076306_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000001686 212.0
DYD3_k127_7083976_0 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004305 433.0
DYD3_k127_7083976_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 378.0
DYD3_k127_7083976_2 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000001354 239.0
DYD3_k127_7117235_0 SMART Metal-dependent phosphohydrolase, HD region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007059 301.0
DYD3_k127_7117235_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007211 292.0
DYD3_k127_7117235_2 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003863 279.0
DYD3_k127_7176184_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006623 301.0
DYD3_k127_7176184_1 PFAM Methyltransferase type 12 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001116 276.0
DYD3_k127_7194384_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 604.0
DYD3_k127_7194384_1 ATPases associated with a variety of cellular activities K11710,K19973 - 3.6.3.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 330.0
DYD3_k127_7194384_2 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000002105 217.0
DYD3_k127_7194384_3 Zinc-uptake complex component A periplasmic K09815,K11707 - - 0.00000000000000000000000000000000000000000000003887 175.0
DYD3_k127_7194384_4 Domain of unknown function (DUF4286) - - - 0.000000000000000000000002057 106.0
DYD3_k127_7200743_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 378.0
DYD3_k127_7200743_1 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002258 291.0
DYD3_k127_7200743_2 Domain of unknown function (DUF4290) - - - 0.000000000000000000000000000000000000000000000001702 182.0
DYD3_k127_7225058_0 Amidohydrolase family - - - 2.242e-266 827.0
DYD3_k127_7225058_1 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000811 626.0
DYD3_k127_7225058_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004298 572.0
DYD3_k127_7225058_3 PFAM peptidase T2 asparaginase 2 K01444,K13051 - 3.4.19.5,3.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 426.0
DYD3_k127_7225058_4 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000009944 263.0
DYD3_k127_7225058_5 - - - - 0.0000000000000000000000000000214 128.0
DYD3_k127_7225058_6 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000006091 119.0
DYD3_k127_7225058_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000004769 67.0
DYD3_k127_7230699_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000002073 224.0
DYD3_k127_7230699_1 AhpC/TSA family - - - 0.0000000000000001415 86.0
DYD3_k127_729783_0 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006831 366.0
DYD3_k127_729783_1 thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 285.0
DYD3_k127_729783_2 Belongs to the UPF0403 family - - - 0.0000000000000000000000000000000000000000000000000000000000001204 214.0
DYD3_k127_729783_3 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000006676 196.0
DYD3_k127_739195_0 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 320.0
DYD3_k127_739195_1 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008635 286.0
DYD3_k127_739195_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000002367 265.0
DYD3_k127_739195_3 TPR repeat - - - 0.0000000000000006895 81.0
DYD3_k127_741697_0 Serine protease, subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 324.0
DYD3_k127_741697_1 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000000000000000000000000000000000000000001119 199.0
DYD3_k127_741697_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.000000000000000000000000000000000000000001724 162.0
DYD3_k127_741697_3 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000000000000002569 118.0
DYD3_k127_741697_4 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000003004 115.0
DYD3_k127_741697_6 SnoaL-like domain - - - 0.0000000000000000001913 94.0
DYD3_k127_741771_0 Carbon-nitrogen hydrolase - - - 1.428e-261 812.0
DYD3_k127_741771_1 Glucose / Sorbosone dehydrogenase - - - 2.549e-216 705.0
DYD3_k127_741771_2 Domain of unknown function (DUF389) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003199 513.0
DYD3_k127_741771_3 - - - - 0.00000000004625 73.0
DYD3_k127_741771_4 - - - - 0.000297 51.0
DYD3_k127_744614_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1236.0
DYD3_k127_744614_1 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000003145 211.0
DYD3_k127_744614_2 GHMP Kinase - - - 0.0000000000000000002424 91.0
DYD3_k127_744614_3 PFAM 2Fe-2S iron-sulfur cluster binding domain K02613 - - 0.0000006492 53.0
DYD3_k127_78149_0 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 322.0
DYD3_k127_78149_1 TamB, inner membrane protein subunit of TAM complex - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003591 327.0
DYD3_k127_78149_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 295.0
DYD3_k127_78149_3 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005781 271.0
DYD3_k127_797146_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 512.0
DYD3_k127_797146_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002185 276.0
DYD3_k127_797146_2 metallopeptidase activity K12287 - - 0.000000000000000000007339 104.0
DYD3_k127_812160_0 peptidyl-tyrosine sulfation - - - 3.912e-279 898.0
DYD3_k127_812160_1 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 338.0
DYD3_k127_812160_2 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.000000000000000016 82.0
DYD3_k127_812160_3 Tetratricopeptide TPR_2 repeat protein - - - 0.0000003774 59.0
DYD3_k127_824095_0 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 2.414e-287 906.0
DYD3_k127_824095_1 PFAM Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000003494 63.0
DYD3_k127_827211_0 Carbamoyl-phosphate synthase K01955 - 6.3.5.5 0.0 1379.0
DYD3_k127_827211_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000316 213.0
DYD3_k127_8338_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 490.0
DYD3_k127_8338_1 phosphoesterase RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 344.0
DYD3_k127_8338_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000003675 231.0
DYD3_k127_8338_3 PFAM FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03767,K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000001314 194.0
DYD3_k127_8338_4 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000002375 103.0
DYD3_k127_8338_5 CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000001362 101.0
DYD3_k127_856245_0 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 501.0
DYD3_k127_856245_1 OmpA MotB domain protein K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 368.0
DYD3_k127_857910_0 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000001166 250.0
DYD3_k127_857910_1 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000004185 192.0
DYD3_k127_857910_2 calcium ion binding - - - 0.00000003465 63.0
DYD3_k127_874419_0 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 350.0
DYD3_k127_874419_1 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004066 284.0
DYD3_k127_874419_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000003368 145.0
DYD3_k127_874419_3 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.00000000000000000000000000000002704 128.0
DYD3_k127_875625_0 glucose-1-phosphate thymidylyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 452.0
DYD3_k127_875625_1 M6 family metalloprotease domain protein - - - 0.00000000000000000000000000000000000000000000000000000000004607 220.0
DYD3_k127_875625_2 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000004034 171.0
DYD3_k127_875625_3 Ribosomal protein L31 K02909 - - 0.000000000000000000000000000000000000054 144.0
DYD3_k127_875625_4 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000006093 134.0
DYD3_k127_881019_0 pyrroloquinoline quinone binding K01206,K01218 - 3.2.1.51,3.2.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 388.0
DYD3_k127_881019_1 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000008084 169.0
DYD3_k127_881019_2 Pkd domain containing protein - - - 0.00000000002295 75.0
DYD3_k127_881019_3 Fungalysin metallopeptidase (M36) - - - 0.00004578 55.0
DYD3_k127_914113_0 Nitrous oxide reductase K00376 - 1.7.2.4 0.0 1139.0
DYD3_k127_914113_1 Periplasmic copper-binding protein (NosD) K07218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 580.0
DYD3_k127_914113_10 - - - - 0.000000000000000000001162 102.0
DYD3_k127_914113_11 Tetratricopeptide repeat - - - 0.000000000000000002092 90.0
DYD3_k127_914113_2 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005011 447.0
DYD3_k127_914113_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007015 368.0
DYD3_k127_914113_4 ABC-2 family transporter protein K19341 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 335.0
DYD3_k127_914113_5 ATPases associated with a variety of cellular activities K19340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 318.0
DYD3_k127_914113_6 lipoprotein involved in nitrous oxide reduction K19342 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 319.0
DYD3_k127_914113_7 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. - - - 0.00000000000000000000000000000000000000000000000000000000000004474 219.0
DYD3_k127_914113_8 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000001384 211.0
DYD3_k127_914113_9 Transglycosylase associated protein - - - 0.0000000000000000000000005911 105.0
DYD3_k127_937076_0 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 6.58e-217 703.0
DYD3_k127_937076_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 330.0
DYD3_k127_937076_2 Peptidyl-prolyl cis-trans isomerase K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000001447 228.0
DYD3_k127_937076_3 extracellular polysaccharide biosynthetic process K13582 - - 0.00000000000000000000000000000000000000000000000000000005406 206.0
DYD3_k127_937076_4 - - - - 0.000000000000000000000000000000000000000001451 159.0
DYD3_k127_937076_5 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000003111 57.0
DYD3_k127_95954_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1185.0
DYD3_k127_95954_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006646 294.0
DYD3_k127_95954_2 Ion transport protein K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006294 270.0
DYD3_k127_95954_3 TraB family K09973 - - 0.00000000000000000000000000000000000000000000000000000000000000000002207 244.0
DYD3_k127_95954_4 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000005185 177.0
DYD3_k127_95954_5 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000002882 89.0
DYD3_k127_964523_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.0000000000000000000000000000000000000000000000001995 188.0
DYD3_k127_964523_1 Polysaccharide biosynthesis C-terminal domain - - - 0.00000000000000000000000000000000000000000000003774 186.0
DYD3_k127_964523_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000001455 149.0
DYD3_k127_964523_3 cellulase activity - - - 0.00000000000000000000000000000001141 147.0
DYD3_k127_964523_4 40-residue YVTN family beta-propeller - - - 0.00000000000000001358 98.0
DYD3_k127_964523_5 Zinc metalloprotease (Elastase) - - - 0.00000003535 63.0