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Overview

ID MAG00961
Name DYD3_bin.33
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Rariloculales
Family Rariloculaceae
Genus FEN-1219
Species
Assembly information
Completeness (%) 80.65
Contamination (%) 1.12
GC content (%) 68.0
N50 (bp) 13,330
Genome size (bp) 4,598,407

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes4020

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1018555_0 Domain of unknown function (DUF1705) K03760 - 2.7.8.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005975 394.0
DYD3_k127_1018555_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004151 394.0
DYD3_k127_1018555_10 - - - - 0.000000000000000000000000221 112.0
DYD3_k127_1018555_11 Histidine kinase - - - 0.000000000000000001552 93.0
DYD3_k127_1018555_12 Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) K07337 - - 0.00000000000000003562 92.0
DYD3_k127_1018555_13 GtrA-like protein - - - 0.0000000000000001676 85.0
DYD3_k127_1018555_14 Outer membrane protein beta-barrel family - - - 0.00000000000008118 79.0
DYD3_k127_1018555_2 ApbE family K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008406 320.0
DYD3_k127_1018555_3 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000001078 258.0
DYD3_k127_1018555_4 Lipid A biosynthesis K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000002347 242.0
DYD3_k127_1018555_5 DNA-templated transcription, initiation K03088,K03091 - - 0.00000000000000000000000000000000000005158 151.0
DYD3_k127_1018555_6 Lipid A Biosynthesis N-terminal domain - - - 0.0000000000000000000000000000000000004834 142.0
DYD3_k127_1018555_7 PAP2 (Acid phosphatase) superfamily protein - - - 0.000000000000000000000000000000000005763 150.0
DYD3_k127_1018555_8 - - - - 0.0000000000000000000000000000008422 131.0
DYD3_k127_1018555_9 Phospholipid methyltransferase - - - 0.00000000000000000000000000236 119.0
DYD3_k127_104683_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 601.0
DYD3_k127_104683_1 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 589.0
DYD3_k127_104683_10 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008307 258.0
DYD3_k127_104683_11 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000008152 239.0
DYD3_k127_104683_12 Ribosomal protein L16p/L10e K02878 GO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000003 233.0
DYD3_k127_104683_13 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000005672 247.0
DYD3_k127_104683_14 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000002743 226.0
DYD3_k127_104683_15 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000006477 205.0
DYD3_k127_104683_16 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000002153 213.0
DYD3_k127_104683_17 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000006893 184.0
DYD3_k127_104683_18 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000001545 182.0
DYD3_k127_104683_19 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000002964 177.0
DYD3_k127_104683_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 467.0
DYD3_k127_104683_20 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000309 169.0
DYD3_k127_104683_21 binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000006639 161.0
DYD3_k127_104683_22 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000002346 157.0
DYD3_k127_104683_23 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000000000000000000000000007344 156.0
DYD3_k127_104683_24 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000005572 153.0
DYD3_k127_104683_25 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000000005784 148.0
DYD3_k127_104683_26 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000000786 132.0
DYD3_k127_104683_27 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000005956 115.0
DYD3_k127_104683_28 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000007733 115.0
DYD3_k127_104683_29 translation elongation factor activity K02358 - - 0.0000000000000000001695 87.0
DYD3_k127_104683_3 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 424.0
DYD3_k127_104683_30 Ribosomal protein L30 K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000001443 82.0
DYD3_k127_104683_31 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000004695 67.0
DYD3_k127_104683_32 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000704 65.0
DYD3_k127_104683_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 386.0
DYD3_k127_104683_5 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 317.0
DYD3_k127_104683_6 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 314.0
DYD3_k127_104683_7 Histidine kinase K02478,K08082 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007136 325.0
DYD3_k127_104683_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0000028,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006446,GO:0006450,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015935,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031554,GO:0031564,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0045727,GO:0045903,GO:0045947,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990145,GO:1990904,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 298.0
DYD3_k127_104683_9 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002009 267.0
DYD3_k127_1048482_0 Belongs to the peptidase S41A family K03797 GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016787,GO:0019538,GO:0023052,GO:0030163,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 560.0
DYD3_k127_1048482_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009821 522.0
DYD3_k127_1048482_2 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 369.0
DYD3_k127_1048482_3 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004532,GO:0004536,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008946,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0016896,GO:0019439,GO:0034611,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001893 254.0
DYD3_k127_1048482_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001909 256.0
DYD3_k127_1048482_5 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000004785 141.0
DYD3_k127_1048482_6 Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000001841 141.0
DYD3_k127_1048482_7 SH3 domain K07184 - - 0.00000000000000000000000000000001029 136.0
DYD3_k127_1048482_8 Protein of unknown function (DUF1249) K09920 - - 0.000000000000000000000000001787 117.0
DYD3_k127_1048482_9 Recombinase zinc beta ribbon domain K06400 - - 0.0000000001046 63.0
DYD3_k127_1049148_0 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.0 1165.0
DYD3_k127_1049148_1 ImcF-related N-terminal domain K11891 - - 2.069e-274 883.0
DYD3_k127_1049148_10 Type VI secretion system protein DotU K11892 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008415 324.0
DYD3_k127_1049148_11 type VI secretion-associated protein, BMA_A0400 family K11890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 323.0
DYD3_k127_1049148_12 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 305.0
DYD3_k127_1049148_13 COG0515 Serine threonine protein kinase K08282,K11916,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003644 291.0
DYD3_k127_1049148_14 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001874 261.0
DYD3_k127_1049148_15 ImpA, N-terminal, type VI secretion system K11902 - - 0.00000000000000000000000000000000000000000000000000000000000000000005612 249.0
DYD3_k127_1049148_16 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000001739 252.0
DYD3_k127_1049148_17 Type VI secretion system, VipA, VC_A0107 or Hcp2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000003573 233.0
DYD3_k127_1049148_18 ImpE protein K11898 - - 0.0000000000000000000000000000000000000000000000000000000000005015 220.0
DYD3_k127_1049148_2 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 1.642e-210 664.0
DYD3_k127_1049148_20 TIGRFAM type VI secretion protein, VC_A0111 family K11895 - - 0.00000000000000000000000000000000000000000000000000000001679 214.0
DYD3_k127_1049148_21 PFAM Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000002733 224.0
DYD3_k127_1049148_22 Type VI secretion K07169,K11894,K11913 - - 0.00000000000000000000000000000000000000000000004746 186.0
DYD3_k127_1049148_23 ABC-2 type transporter K01992 - - 0.0000000000000000000000000000000000000000000003227 188.0
DYD3_k127_1049148_24 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000004915 167.0
DYD3_k127_1049148_25 PAAR motif - - - 0.0000000000000000000000000000000000000002165 152.0
DYD3_k127_1049148_26 Gene 25-like lysozyme K11897 - - 0.0000000000000000000000000000000000000007143 155.0
DYD3_k127_1049148_27 Type VI secretion system effector, Hcp K11903 - - 0.00000000000000000000000000000000000000198 153.0
DYD3_k127_1049148_28 ATPase activity - - - 0.0000000000000000000000000000000000006098 146.0
DYD3_k127_1049148_29 - - - - 0.0000000000000000000000000000000000009045 144.0
DYD3_k127_1049148_3 Type VI secretion system, TssF K11896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 569.0
DYD3_k127_1049148_31 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.00000000000000000000000000001981 138.0
DYD3_k127_1049148_32 - - - - 0.00000000000000001315 94.0
DYD3_k127_1049148_34 TIGRFAM type VI secretion lipoprotein, VC_A0113 family K11906 - - 0.0000000005707 72.0
DYD3_k127_1049148_35 - - - - 0.000000000687 70.0
DYD3_k127_1049148_36 Protein of unknown function (DUF2974) - - - 0.0000005519 61.0
DYD3_k127_1049148_4 Acetylornithine deacetylase Succinyl-diaminopimelate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005259 491.0
DYD3_k127_1049148_5 type VI secretion protein K11893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 447.0
DYD3_k127_1049148_6 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11899 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 432.0
DYD3_k127_1049148_7 Protein conserved in bacteria K11904 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005978 373.0
DYD3_k127_1049148_8 Peptidoglycan-synthase activator LpoB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 332.0
DYD3_k127_1049148_9 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005324 333.0
DYD3_k127_1058973_0 COG3209 Rhs family protein - - - 3.07e-278 899.0
DYD3_k127_1058973_1 glucose sorbosone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 314.0
DYD3_k127_1058973_2 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001639 252.0
DYD3_k127_1058973_3 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.0000000000000000000000000000000000000000003946 170.0
DYD3_k127_1058973_4 chain release factor K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.00000000000000000000000000000001255 130.0
DYD3_k127_1058973_5 Tetratricopeptide repeat - - - 0.0000000000004256 79.0
DYD3_k127_1059498_0 Glycosyl transferases group 1 K08256 - 2.4.1.345 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006136 625.0
DYD3_k127_1059498_1 beta-1,4-mannooligosaccharide phosphorylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 481.0
DYD3_k127_1059498_2 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 413.0
DYD3_k127_1059498_3 PFAM Cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 344.0
DYD3_k127_1059498_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 329.0
DYD3_k127_1059498_5 Crp-like helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000007251 233.0
DYD3_k127_1059498_6 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000007742 213.0
DYD3_k127_1059498_7 Cytochrome C' - - - 0.00000000000000000004049 96.0
DYD3_k127_1059498_8 Transglutaminase/protease-like homologues - - - 0.0000718 50.0
DYD3_k127_1062303_0 Catalase K03781 - 1.11.1.6 2.725e-295 921.0
DYD3_k127_1062303_1 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 488.0
DYD3_k127_1062303_11 - - - - 0.0006535 49.0
DYD3_k127_1062303_2 Trypsin K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006331 433.0
DYD3_k127_1062303_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006394 312.0
DYD3_k127_1062303_4 Peptidase family M23 K21472 - - 0.0000000000000000000000000000000000000000005666 173.0
DYD3_k127_1062303_5 Protein of unknown function (DUF421) - - - 0.000000000000000000000000000000000000000008582 171.0
DYD3_k127_1062303_6 - - - - 0.000000000000000000000002543 107.0
DYD3_k127_1062303_7 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.00000000000000000000006408 110.0
DYD3_k127_1062303_8 translation release factor activity - - - 0.000000000000000009351 98.0
DYD3_k127_1062303_9 - - - - 0.00000000000243 78.0
DYD3_k127_1078365_0 Fungal trichothecene efflux pump (TRI12) - - - 2.942e-202 640.0
DYD3_k127_1078365_1 phosphorelay sensor kinase activity K13598,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 389.0
DYD3_k127_1078365_2 receptor K02014,K16089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008759 295.0
DYD3_k127_1078365_3 Domain of unknown function (DUF4154) - - - 0.000000000000000000000002659 112.0
DYD3_k127_1088713_0 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K12297 - 2.1.1.173,2.1.1.264 1.768e-235 751.0
DYD3_k127_1088713_1 Belongs to the peptidase S1B family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005287 618.0
DYD3_k127_1088713_2 peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 369.0
DYD3_k127_1088713_3 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001744 241.0
DYD3_k127_1088713_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009314,GO:0009628,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000000009199 237.0
DYD3_k127_1088713_6 - - - - 0.000000000000000000000000000000000000000000000000000000001885 209.0
DYD3_k127_1088713_7 TPM domain K08988 - - 0.00000000000000000000000000000000000000001798 162.0
DYD3_k127_1088713_8 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000002161 133.0
DYD3_k127_1088713_9 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000007076 113.0
DYD3_k127_109639_0 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 323.0
DYD3_k127_109639_1 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001307 269.0
DYD3_k127_109639_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000006344 109.0
DYD3_k127_109639_3 ATP synthase I chain K02116 GO:0003674,GO:0003824,GO:0005215,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044769,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000001707 64.0
DYD3_k127_1122259_0 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 504.0
DYD3_k127_1122259_1 lyase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 356.0
DYD3_k127_1122259_2 Creatinine amidohydrolase K01470 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 288.0
DYD3_k127_1122259_3 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006629 280.0
DYD3_k127_1122259_4 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009521 263.0
DYD3_k127_1122259_5 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000004218 178.0
DYD3_k127_1122259_6 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000005601 114.0
DYD3_k127_118660_0 MoeA C-terminal region (domain IV) K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 521.0
DYD3_k127_118660_1 synthase K01641,K15311 - 2.3.3.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 510.0
DYD3_k127_118660_10 TIGRFAM hopanoid biosynthesis associated membrane protein HpnM K07323 - - 0.00000000000000000000000009753 116.0
DYD3_k127_118660_11 - - - - 0.0000000004588 66.0
DYD3_k127_118660_2 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 441.0
DYD3_k127_118660_3 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003629 366.0
DYD3_k127_118660_4 branched-chain amino acid permease (azaleucine resistance) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001208 282.0
DYD3_k127_118660_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004355 273.0
DYD3_k127_118660_6 Molybdopterin guanine dinucleotide synthesis protein B K03753 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000001658 231.0
DYD3_k127_118660_7 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000001253 232.0
DYD3_k127_118660_8 PFAM branched-chain amino acid transport - - - 0.000000000000000000000000000000000008839 144.0
DYD3_k127_118660_9 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000002273 121.0
DYD3_k127_1225455_0 MacB-like periplasmic core domain - - - 4.3e-205 666.0
DYD3_k127_1225455_1 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 496.0
DYD3_k127_1225455_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 395.0
DYD3_k127_1225455_3 - - - - 0.0000000000000000000000000000000000000009214 168.0
DYD3_k127_1228260_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 5.749e-307 948.0
DYD3_k127_1228260_1 DNA helicase K03657 - 3.6.4.12 6.468e-269 860.0
DYD3_k127_1228260_10 Tetratricopeptide repeat - - - 0.000000000000000000002504 102.0
DYD3_k127_1228260_11 signal sequence binding - - - 0.0000000001942 68.0
DYD3_k127_1228260_2 PFAM TrkA-N domain K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 578.0
DYD3_k127_1228260_3 COG1622 Heme copper-type cytochrome quinol oxidases, subunit 2 K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004636 542.0
DYD3_k127_1228260_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007806 365.0
DYD3_k127_1228260_5 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 358.0
DYD3_k127_1228260_6 cytochrome oxidase assembly K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 344.0
DYD3_k127_1228260_7 Cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000004064 198.0
DYD3_k127_1228260_8 Small integral membrane protein - - - 0.000000000000000000000000000000000001562 143.0
DYD3_k127_1228260_9 Domain of unknown function (DUF4177) - - - 0.00000000000000000000000002656 112.0
DYD3_k127_1230452_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000001567 249.0
DYD3_k127_1230452_1 Peptidase_C39 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000001094 233.0
DYD3_k127_1230452_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000007313 183.0
DYD3_k127_1230452_3 Amidinotransferase - - - 0.00000000000000000000000000000000000000000002291 166.0
DYD3_k127_1230452_5 protein conserved in bacteria containing a pentein-type domain - - - 0.000000000000000000000001145 111.0
DYD3_k127_1230452_6 - - - - 0.00000000000000007211 92.0
DYD3_k127_1230452_7 - - - - 0.000000000009821 70.0
DYD3_k127_1230452_8 EF-hand domain pair - - - 0.000000009936 68.0
DYD3_k127_1252135_0 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006135 456.0
DYD3_k127_1252135_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007388 410.0
DYD3_k127_1252135_2 Dehydrogenase - - - 0.000000000000000000000000000000000005758 148.0
DYD3_k127_1252135_3 endonuclease activity - - - 0.000000000000000000000000000006224 125.0
DYD3_k127_1252135_4 Insulinase (Peptidase family M16) K07263 - - 0.0000000000154 64.0
DYD3_k127_1271216_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 404.0
DYD3_k127_1271216_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005534 271.0
DYD3_k127_1271216_10 - - - - 0.0000000954 62.0
DYD3_k127_1271216_2 Protein of unknown function (DUF3500) - - - 0.000000000000000000000000000000000000000000000000000000000000000003037 239.0
DYD3_k127_1271216_3 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004697 234.0
DYD3_k127_1271216_4 heme binding K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000000004189 196.0
DYD3_k127_1271216_5 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000009994 188.0
DYD3_k127_1271216_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000583 121.0
DYD3_k127_1271216_7 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000002836 98.0
DYD3_k127_1271216_9 Pfam SEC-C motif - - - 0.00000002885 56.0
DYD3_k127_1304626_0 Major Facilitator Superfamily - - - 4.156e-214 675.0
DYD3_k127_1304626_1 DNA topological change K03168 - 5.99.1.2 1.123e-210 689.0
DYD3_k127_1304626_10 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000006729 143.0
DYD3_k127_1304626_11 LysR substrate binding domain K16516 - - 0.000000000000000000000026 109.0
DYD3_k127_1304626_12 - - - - 0.000000000000000000001809 97.0
DYD3_k127_1304626_13 - - - - 0.00000000000000000006941 95.0
DYD3_k127_1304626_14 Metallo-beta-lactamase superfamily - - - 0.000000000000000008068 91.0
DYD3_k127_1304626_15 Beta-lactamase superfamily domain - - - 0.00000000000002516 80.0
DYD3_k127_1304626_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 439.0
DYD3_k127_1304626_3 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 403.0
DYD3_k127_1304626_4 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 364.0
DYD3_k127_1304626_5 Biotin-lipoyl like K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 338.0
DYD3_k127_1304626_6 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 315.0
DYD3_k127_1304626_7 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - - - 0.00000000000000000000000000000000000000000000000000004629 201.0
DYD3_k127_1304626_8 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000008352 169.0
DYD3_k127_1304626_9 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000007205 154.0
DYD3_k127_1313991_0 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271,K12961 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000002525 263.0
DYD3_k127_1313991_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000005276 284.0
DYD3_k127_1313991_2 PFAM LppC K07121 - - 0.0000000000000000000000000000000000000000000000000000000000005065 233.0
DYD3_k127_1313991_3 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000004642 102.0
DYD3_k127_1313991_4 - - - - 0.00000000000001533 76.0
DYD3_k127_1314166_0 Aminotransferase class-III K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 501.0
DYD3_k127_1314166_1 Belongs to the arginase family K01476,K01480,K12255,K18459 - 3.5.3.1,3.5.3.11,3.5.3.17,3.5.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 378.0
DYD3_k127_1314166_2 COG1404 Subtilisin-like serine proteases - - - 0.0000000000000000000000000000000000000000000000000000000000000000007669 250.0
DYD3_k127_1314166_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000334 164.0
DYD3_k127_1314166_4 - - - - 0.0000000000000000000000000000000000000001235 164.0
DYD3_k127_1314166_5 surface antigen - - - 0.00000000000000000008638 99.0
DYD3_k127_1314166_6 - - - - 0.0000000000264 75.0
DYD3_k127_1357714_0 regulator of chromosome condensation, RCC1 - - - 7.959e-210 681.0
DYD3_k127_1357714_1 Capsule assembly protein Wzi - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 399.0
DYD3_k127_1357714_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0042802,GO:0043021,GO:0043022,GO:0043170,GO:0043335,GO:0043412,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0050896,GO:0051083,GO:0061077,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 338.0
DYD3_k127_1357714_3 - - - - 0.000000000000000007766 90.0
DYD3_k127_1357714_4 PFAM AIG2 family protein K20757 - 4.3.1.27 0.0000000000006599 77.0
DYD3_k127_1357714_5 Glycosyl transferases group 1 K02844 - - 0.000000000004643 70.0
DYD3_k127_1357714_6 domain protein - - - 0.0001699 55.0
DYD3_k127_1357714_7 - - - - 0.0005 48.0
DYD3_k127_1367668_0 DNA topological change - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 558.0
DYD3_k127_1367668_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 554.0
DYD3_k127_1367668_10 - - - - 0.00000000000000000000000008199 121.0
DYD3_k127_1367668_11 - - - - 0.000000000000000000000003747 113.0
DYD3_k127_1367668_12 Transcription elongation factor K06140 - - 0.00000000000000000000643 99.0
DYD3_k127_1367668_13 efflux transmembrane transporter activity - - - 0.0000000000002203 80.0
DYD3_k127_1367668_14 - - - - 0.000000002231 69.0
DYD3_k127_1367668_2 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 319.0
DYD3_k127_1367668_3 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006116 259.0
DYD3_k127_1367668_4 Bacterial transcription activator, effector binding domain K13652 - - 0.000000000000000000000000000000000000000000000000000000000002577 222.0
DYD3_k127_1367668_5 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000004101 186.0
DYD3_k127_1367668_6 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000001446 172.0
DYD3_k127_1367668_7 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000001071 149.0
DYD3_k127_1367668_8 Ankyrin repeats (many copies) - - - 0.0000000000000000000000000000000000273 152.0
DYD3_k127_1367668_9 Ankyrin repeat-containing protein K21440 - - 0.00000000000000000000000000000003379 143.0
DYD3_k127_1376433_0 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008242 350.0
DYD3_k127_1376433_1 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000001628 244.0
DYD3_k127_1376433_2 - - - - 0.00000000000000000000000000000000007182 146.0
DYD3_k127_1376433_3 - - - - 0.00000000002458 77.0
DYD3_k127_1376433_5 - - - - 0.00000002689 65.0
DYD3_k127_1376433_6 - - - - 0.00000004945 66.0
DYD3_k127_1392030_0 COG0471 Di- and tricarboxylate transporters - - - 3.798e-205 664.0
DYD3_k127_1392030_1 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 339.0
DYD3_k127_1392030_10 - - - - 0.000000000000000000001276 108.0
DYD3_k127_1392030_11 - - - - 0.00000000000000000128 93.0
DYD3_k127_1392030_12 Bacterial PH domain K09167 - - 0.0000000000000004115 85.0
DYD3_k127_1392030_13 - - - - 0.000001383 61.0
DYD3_k127_1392030_14 ATP binding K13525 - - 0.000007208 58.0
DYD3_k127_1392030_15 Lipocalin-like domain - - - 0.000384 52.0
DYD3_k127_1392030_2 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001075 291.0
DYD3_k127_1392030_3 - - - - 0.000000000000000000000000000000000000000000000000000000000005464 224.0
DYD3_k127_1392030_4 Bacterial PH domain K08981 - - 0.00000000000000000000000000000000000000000000000000000000005924 227.0
DYD3_k127_1392030_5 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000005203 208.0
DYD3_k127_1392030_6 - - - - 0.0000000000000000000000000000000000000000000000000001499 193.0
DYD3_k127_1392030_7 Receptor - - - 0.000000000000000000000000000000000000000000000002812 188.0
DYD3_k127_1392030_8 - - - - 0.0000000000000000000000000000000000000000000005351 177.0
DYD3_k127_1392030_9 - - - - 0.000000000000000000000000000000000000000008697 164.0
DYD3_k127_1395435_0 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 2.367e-265 846.0
DYD3_k127_1395435_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000517 508.0
DYD3_k127_1395435_10 Two component transcriptional regulator, winged helix family K07657 GO:0001098,GO:0001108,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042802,GO:0043254,GO:0044087,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000004958 147.0
DYD3_k127_1395435_11 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000001263 82.0
DYD3_k127_1395435_12 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000004917 80.0
DYD3_k127_1395435_13 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000002305 66.0
DYD3_k127_1395435_14 Putative zinc-finger - - - 0.0000001309 60.0
DYD3_k127_1395435_15 COG0457 FOG TPR repeat - - - 0.0001164 55.0
DYD3_k127_1395435_2 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 411.0
DYD3_k127_1395435_3 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000425 339.0
DYD3_k127_1395435_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 312.0
DYD3_k127_1395435_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002233 279.0
DYD3_k127_1395435_6 belongs to the bacterial solute-binding protein 3 family K02030,K02424,K10036 - - 0.00000000000000000000000000000000000000000000000000000000000000000001766 244.0
DYD3_k127_1395435_7 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000018 199.0
DYD3_k127_1395435_8 serine threonine protein kinase K11912,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000001555 202.0
DYD3_k127_1395435_9 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000005179 198.0
DYD3_k127_1398461_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 9.33e-242 758.0
DYD3_k127_1398461_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 5.093e-200 638.0
DYD3_k127_1398461_10 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 331.0
DYD3_k127_1398461_11 Putative esterase K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005765 345.0
DYD3_k127_1398461_12 Belongs to the GST superfamily K11209 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 304.0
DYD3_k127_1398461_13 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005014 304.0
DYD3_k127_1398461_14 Major intrinsic protein K02440 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007175 308.0
DYD3_k127_1398461_15 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006967 286.0
DYD3_k127_1398461_16 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004419 274.0
DYD3_k127_1398461_17 protein conserved in bacteria containing a divergent form of TPR repeats - - - 0.000000000000000000000000000000000000000000000000000001663 199.0
DYD3_k127_1398461_18 SMART DNA-directed DNA polymerase B K02336 - 2.7.7.7 0.0000000000000000000000000000000000000000000000007205 182.0
DYD3_k127_1398461_19 homocysteine K00547 - 2.1.1.10 0.0000000000000000000000000000000000000001162 162.0
DYD3_k127_1398461_2 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 602.0
DYD3_k127_1398461_20 60Kd inner membrane protein K03217 - - 0.0000000000000000000000001298 114.0
DYD3_k127_1398461_22 CHAP domain - - - 0.00000001226 63.0
DYD3_k127_1398461_23 - - - - 0.0000002827 53.0
DYD3_k127_1398461_25 Aminoglycoside phosphotransferase - - - 0.0004951 51.0
DYD3_k127_1398461_3 PFAM Uncharacterised protein family UPF0324 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 602.0
DYD3_k127_1398461_4 Glutathione S-transferase, C-terminal domain K07393 GO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016672,GO:0016740,GO:0016765,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007905 502.0
DYD3_k127_1398461_5 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 508.0
DYD3_k127_1398461_6 Surface antigen variable number K07278 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009086 429.0
DYD3_k127_1398461_7 Retinal pigment epithelial membrane protein K11159 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 409.0
DYD3_k127_1398461_8 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008053 391.0
DYD3_k127_1398461_9 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 364.0
DYD3_k127_1412194_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K05559 - - 0.0 1182.0
DYD3_k127_1412194_1 Subunit D of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali K05561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008158 540.0
DYD3_k127_1412194_10 Subunit F of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali K05563 - - 0.000000000000000000000000000003392 122.0
DYD3_k127_1412194_2 Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 366.0
DYD3_k127_1412194_3 membrane protein (homolog of Drosophila rhomboid) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003872 283.0
DYD3_k127_1412194_4 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003477 251.0
DYD3_k127_1412194_5 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005755 262.0
DYD3_k127_1412194_6 LysR family - - - 0.000000000000000000000000000000000000000000000001617 186.0
DYD3_k127_1412194_7 Subunit C of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali K05560 - - 0.000000000000000000000000000000000000000000006349 165.0
DYD3_k127_1412194_8 Na+/H+ ion antiporter subunit K05562 - - 0.0000000000000000000000000000000000000001005 168.0
DYD3_k127_1412194_9 Monovalent cation proton antiporter subunit MnhG PhaG K05564 - - 0.0000000000000000000000000000005942 130.0
DYD3_k127_1413426_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 382.0
DYD3_k127_1413426_1 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 350.0
DYD3_k127_1413426_2 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 296.0
DYD3_k127_1413426_3 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003561 280.0
DYD3_k127_1413426_4 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006189 255.0
DYD3_k127_1413426_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000000000000000007203 127.0
DYD3_k127_1413426_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000002268 126.0
DYD3_k127_1413426_7 ABC-type transport system involved in multi-copper enzyme maturation permease component - - - 0.000000000000000000000003593 121.0
DYD3_k127_1413426_8 DNA-sulfur modification-associated - - - 0.00000005643 64.0
DYD3_k127_1416028_0 MacB-like periplasmic core domain - - - 3.278e-221 715.0
DYD3_k127_1416028_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005038 612.0
DYD3_k127_1416028_10 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009149 276.0
DYD3_k127_1416028_11 BAAT / Acyl-CoA thioester hydrolase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000003794 250.0
DYD3_k127_1416028_12 KR domain - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000002503 234.0
DYD3_k127_1416028_13 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000004474 219.0
DYD3_k127_1416028_14 NmrA-like family K19267 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000001642 213.0
DYD3_k127_1416028_15 translation initiation inhibitor, yjgF family K04782 - 4.2.99.21 0.0000000000000000000000000000000000000000000000000000002127 210.0
DYD3_k127_1416028_16 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000008312 207.0
DYD3_k127_1416028_17 PFAM glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000001066 168.0
DYD3_k127_1416028_18 - - - - 0.000000000000000000000000000000000000000000002918 174.0
DYD3_k127_1416028_19 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000005815 162.0
DYD3_k127_1416028_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006669 486.0
DYD3_k127_1416028_20 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000103 151.0
DYD3_k127_1416028_21 GrpB protein - - - 0.000000000000000000000000000000003843 136.0
DYD3_k127_1416028_22 PFAM RNA recognition motif - - - 0.00000000000000000000000000000001547 131.0
DYD3_k127_1416028_23 Domain of unknown function (DUF4157) - - - 0.000000000000000000000000000001695 127.0
DYD3_k127_1416028_24 - - - - 0.00000000000000000000000001329 117.0
DYD3_k127_1416028_25 - - - - 0.00000000000000000000000006892 124.0
DYD3_k127_1416028_26 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000008476 105.0
DYD3_k127_1416028_27 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000006565 105.0
DYD3_k127_1416028_28 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000002046 82.0
DYD3_k127_1416028_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 453.0
DYD3_k127_1416028_31 Transcriptional regulatory protein, C terminal - - - 0.000000002655 60.0
DYD3_k127_1416028_32 - - - - 0.000000009148 62.0
DYD3_k127_1416028_33 acetyltransferase - - - 0.000006291 57.0
DYD3_k127_1416028_4 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 340.0
DYD3_k127_1416028_5 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 299.0
DYD3_k127_1416028_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 302.0
DYD3_k127_1416028_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000302 306.0
DYD3_k127_1416028_8 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 297.0
DYD3_k127_1416028_9 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003309 273.0
DYD3_k127_1516909_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1081.0
DYD3_k127_1516909_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 558.0
DYD3_k127_1516909_2 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 316.0
DYD3_k127_1516909_3 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000002397 179.0
DYD3_k127_1516909_4 Modulates RecA activity K03565 - - 0.000000000000000000000000000000000188 139.0
DYD3_k127_1516909_5 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000002145 126.0
DYD3_k127_1516909_6 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.00000000000000000000002082 100.0
DYD3_k127_1516909_7 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.00004754 45.0
DYD3_k127_1519753_0 Penicillin amidase K01434 - 3.5.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 488.0
DYD3_k127_1519753_1 MCM2/3/5 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 440.0
DYD3_k127_1519753_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004075 274.0
DYD3_k127_1519753_3 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007127 244.0
DYD3_k127_1519753_4 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000006604 213.0
DYD3_k127_1519753_5 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000424 156.0
DYD3_k127_1519753_6 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000008876 97.0
DYD3_k127_1519753_7 Domain of unknown function (DUF4381) - - - 0.0000000000007562 72.0
DYD3_k127_153989_0 Dehydrogenase E1 component K00164 GO:0003674,GO:0003824,GO:0004591,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0055114,GO:0071704,GO:0072350,GO:1902494,GO:1990204,GO:1990234 1.2.4.2 0.0 1100.0
DYD3_k127_153989_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 557.0
DYD3_k127_153989_10 Thioesterase superfamily K01075,K07107 GO:0003674,GO:0003824,GO:0016787,GO:0016788,GO:0016790 3.1.2.23 0.0000000000000000000000000000785 120.0
DYD3_k127_153989_11 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000005277 102.0
DYD3_k127_153989_12 Membrane protein TolA K03646 - - 0.00000000000006192 81.0
DYD3_k127_153989_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 507.0
DYD3_k127_153989_3 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 479.0
DYD3_k127_153989_4 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003807 432.0
DYD3_k127_153989_5 COG0811 Biopolymer transport proteins K03562 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0015893,GO:0016020,GO:0016021,GO:0017038,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0032153,GO:0033036,GO:0042221,GO:0042493,GO:0042886,GO:0042891,GO:0043213,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0050896,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000002271 248.0
DYD3_k127_153989_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000009982 217.0
DYD3_k127_153989_7 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000001588 169.0
DYD3_k127_153989_8 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000004618 151.0
DYD3_k127_153989_9 biopolymer transport protein K03560 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032153,GO:0042221,GO:0042493,GO:0042886,GO:0042891,GO:0043213,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000001267 147.0
DYD3_k127_154693_0 Major Facilitator Superfamily K18926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 529.0
DYD3_k127_154693_1 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 364.0
DYD3_k127_154693_10 membrane K09790 - - 0.00004824 51.0
DYD3_k127_154693_2 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000811 207.0
DYD3_k127_154693_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000001145 190.0
DYD3_k127_154693_4 ABC transporter - - - 0.0000000000000000000000000000000000000000000000001528 186.0
DYD3_k127_154693_5 - - - - 0.000000000000000000000000000000000000000000000001047 186.0
DYD3_k127_154693_6 - - - - 0.00000000000000000000000000002865 121.0
DYD3_k127_154693_7 - - - - 0.00000000000001792 81.0
DYD3_k127_154693_8 - - - - 0.000000004419 62.0
DYD3_k127_154693_9 - - - - 0.00000105 51.0
DYD3_k127_1566879_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 533.0
DYD3_k127_1566879_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006782 487.0
DYD3_k127_1566879_10 Belongs to the HSP15 family K04762 - - 0.0000000000000000000001172 108.0
DYD3_k127_1566879_2 COG0616 Periplasmic serine proteases (ClpP class) K04773 GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0016020,GO:0016021,GO:0016485,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 453.0
DYD3_k127_1566879_3 carbohydrate transport K11688,K21395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008565 299.0
DYD3_k127_1566879_4 FeS assembly SUF system protein SufT - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004728 261.0
DYD3_k127_1566879_5 FeS assembly protein SufD K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009939 271.0
DYD3_k127_1566879_6 TIGRFAM SUF system FeS K04488 - - 0.0000000000000000000000000000000000000000000000001563 187.0
DYD3_k127_1566879_7 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000001331 165.0
DYD3_k127_1566879_8 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - 0.000000000000000000000000001198 118.0
DYD3_k127_1566879_9 PFAM Phosphoglycerate mutase K08296 - - 0.00000000000000000000000004073 114.0
DYD3_k127_158717_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1137.0
DYD3_k127_158717_1 COG3104 Dipeptide tripeptide permease K03305 - - 8.621e-213 677.0
DYD3_k127_158717_10 Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005678 275.0
DYD3_k127_158717_11 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000001238 287.0
DYD3_k127_158717_12 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000007612 261.0
DYD3_k127_158717_13 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002859 239.0
DYD3_k127_158717_14 Cytochrome C oxidase subunit II, periplasmic domain K02275 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009319,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0034641,GO:0042773,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070069,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000004877 228.0
DYD3_k127_158717_15 Belongs to the ATCase OTCase family K09065,K13043 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.11,2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000002006 232.0
DYD3_k127_158717_16 PFAM cytochrome c - - - 0.000000000000000000000000000000000000000000000000000004823 201.0
DYD3_k127_158717_17 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145,K05829 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000002949 211.0
DYD3_k127_158717_18 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000000008571 188.0
DYD3_k127_158717_19 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.00000000000000000000000000000000000000000000007776 172.0
DYD3_k127_158717_2 COG0436 Aspartate tyrosine aromatic aminotransferase K14287 - 2.6.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 486.0
DYD3_k127_158717_20 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000008968 174.0
DYD3_k127_158717_21 Transfers electrons from cytochrome c551 to cytochrome oxidase - - - 0.000000000000000000000000000000000000000000001054 173.0
DYD3_k127_158717_22 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000003382 178.0
DYD3_k127_158717_23 Domain of unknown function (DUF4399) - - - 0.000000000000000000000000000000000000000005778 156.0
DYD3_k127_158717_24 Regulates arginine biosynthesis genes K03402 - - 0.00000000000000000002105 105.0
DYD3_k127_158717_25 mttA/Hcf106 family K03116 - - 0.00000000000000003702 84.0
DYD3_k127_158717_26 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000007539 64.0
DYD3_k127_158717_3 Peptidoglycan-binding domain 1 protein K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 426.0
DYD3_k127_158717_4 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 395.0
DYD3_k127_158717_5 COG1131 ABC-type multidrug transport system, ATPase component K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 403.0
DYD3_k127_158717_6 Lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003199 319.0
DYD3_k127_158717_7 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 306.0
DYD3_k127_158717_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009314,GO:0009628,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 288.0
DYD3_k127_158717_9 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001956 289.0
DYD3_k127_1612536_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1040.0
DYD3_k127_1612536_1 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 539.0
DYD3_k127_1612536_2 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007198 359.0
DYD3_k127_1612536_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000005996 247.0
DYD3_k127_1612536_4 response to abiotic stimulus K06867 - - 0.000000000000000000000000000000000000000000000000000006116 215.0
DYD3_k127_1612536_5 Salt-induced outer membrane protein K07283 - - 0.000000000000000000000000000000000008024 150.0
DYD3_k127_1612536_6 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000191 141.0
DYD3_k127_1612536_7 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000006304 136.0
DYD3_k127_1612536_8 PIN domain - - - 0.00000000000000000000003226 105.0
DYD3_k127_1639475_0 UDP binding domain K02474 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 584.0
DYD3_k127_1639475_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 497.0
DYD3_k127_1639475_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342,K14159 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7,3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001686 281.0
DYD3_k127_1639475_3 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007562 263.0
DYD3_k127_1639475_4 Catalyzes a key regulatory step in fatty acid biosynthesis K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000001831 287.0
DYD3_k127_1639475_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000001388 238.0
DYD3_k127_1639475_6 protein conserved in cyanobacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000002674 242.0
DYD3_k127_1639475_7 Methyltransferase domain - - - 0.000000000000000000000000000000001015 140.0
DYD3_k127_1648373_0 Alpha-L-arabinofuranosidase C-terminus K01209 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007885 597.0
DYD3_k127_1648373_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000001811 200.0
DYD3_k127_1648373_2 Protein of unknown function (DUF2589) - - - 0.000000000000000000000000000000000005176 144.0
DYD3_k127_1648373_3 Protein of unknown function (DUF2589) - - - 0.00000002699 63.0
DYD3_k127_1648373_4 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000003873 55.0
DYD3_k127_1648373_5 - - - - 0.0002573 53.0
DYD3_k127_1658588_0 ADP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 377.0
DYD3_k127_1658588_1 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001934 248.0
DYD3_k127_1658588_2 - - - - 0.0000000000000000000000004925 114.0
DYD3_k127_1658588_3 - - - - 0.00000000000000000000002295 100.0
DYD3_k127_1658588_4 - - - - 0.000000000000000007135 93.0
DYD3_k127_168785_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 517.0
DYD3_k127_168785_1 COG1109 Phosphomannomutase K01840,K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003614 498.0
DYD3_k127_168785_2 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 394.0
DYD3_k127_1713369_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007715 589.0
DYD3_k127_1713369_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 478.0
DYD3_k127_1713369_10 Preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000007774 123.0
DYD3_k127_1713369_11 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000003741 122.0
DYD3_k127_1713369_12 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000002135 104.0
DYD3_k127_1713369_13 NifU-like N terminal domain - - - 0.00000002067 60.0
DYD3_k127_1713369_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 410.0
DYD3_k127_1713369_3 Aminotransferase class-V K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 357.0
DYD3_k127_1713369_4 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 322.0
DYD3_k127_1713369_5 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000005462 233.0
DYD3_k127_1713369_6 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533,K15396 - 2.1.1.200 0.0000000000000000000000000000000000000000000000000000000000000000004336 237.0
DYD3_k127_1713369_7 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000002025 217.0
DYD3_k127_1713369_8 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000002404 155.0
DYD3_k127_1713369_9 TIGRFAM type IV pilus biogenesis stability protein PilW K02656 - - 0.000000000000000000000000000006507 128.0
DYD3_k127_1723153_0 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 612.0
DYD3_k127_1723153_1 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 399.0
DYD3_k127_1723153_2 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 382.0
DYD3_k127_1728854_0 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000482 508.0
DYD3_k127_1728854_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003677 436.0
DYD3_k127_1728854_2 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008331 321.0
DYD3_k127_1728854_3 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 317.0
DYD3_k127_1728854_4 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000003024 226.0
DYD3_k127_1728854_5 ABC transporter K13409 - - 0.0000000000000000000000000000000000000000000000000000129 194.0
DYD3_k127_1728854_6 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000007037 167.0
DYD3_k127_1728854_7 Platelet-activating factor acetylhydrolase, plasma intracellular isoform II - - - 0.00000000000000000000000000000000000001363 160.0
DYD3_k127_1728854_8 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000567 123.0
DYD3_k127_1752636_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0 1325.0
DYD3_k127_1752636_1 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000007445 226.0
DYD3_k127_1752636_2 Phage tail sheath protein subtilisin-like domain K06907 - - 0.000000000000000000000000000000000000000000000000000000000000003188 237.0
DYD3_k127_1777186_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 9.601e-292 912.0
DYD3_k127_1777186_1 trehalohydrolase K01236 - 3.2.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 590.0
DYD3_k127_1777186_12 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000008874 138.0
DYD3_k127_1777186_13 PFAM glycosyl transferase family 9 - - - 0.000000000000000004976 89.0
DYD3_k127_1777186_14 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000003282 82.0
DYD3_k127_1777186_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009729 481.0
DYD3_k127_1777186_3 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 404.0
DYD3_k127_1777186_4 TIGRFAM Undecaprenyl-phosphate glucose phosphotransferase K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 386.0
DYD3_k127_1777186_5 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 348.0
DYD3_k127_1777186_6 asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008273 351.0
DYD3_k127_1777186_7 Glycosyl transferase 4-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 342.0
DYD3_k127_1777186_8 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 293.0
DYD3_k127_1777186_9 HAD-hyrolase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000002654 235.0
DYD3_k127_1818515_0 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 1.944e-272 850.0
DYD3_k127_1818515_1 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 563.0
DYD3_k127_1818515_2 malonyl CoA-acyl carrier protein transacylase K00645,K13935 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 336.0
DYD3_k127_1818515_3 D-arabinono-1,4-lactone oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 299.0
DYD3_k127_1818515_4 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006658 282.0
DYD3_k127_1818515_5 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003611 252.0
DYD3_k127_1818515_6 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.000000000000000000000000000000000000000000000945 179.0
DYD3_k127_1818515_7 Integral membrane protein TerC family - - - 0.0000000000000000000000000000001497 127.0
DYD3_k127_1818515_8 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000003864 116.0
DYD3_k127_1818515_9 - - - - 0.00003862 53.0
DYD3_k127_182124_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007436 298.0
DYD3_k127_182124_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000001116 199.0
DYD3_k127_182124_2 SNARE associated Golgi protein - - - 0.00000000000000000000001449 114.0
DYD3_k127_182124_3 PQQ-like domain K05889 - 1.1.2.6 0.00000000004696 75.0
DYD3_k127_182124_4 PQQ-like domain K05889 - 1.1.2.6 0.000000002413 61.0
DYD3_k127_1823236_0 Two component, sigma54 specific, transcriptional regulator, Fis family K10943 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005331 439.0
DYD3_k127_1823236_1 The M ring may be actively involved in energy transduction K02409 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008055 438.0
DYD3_k127_1823236_10 flagellar protein FlaG K06603 - - 0.0000000000003719 74.0
DYD3_k127_1823236_2 ATPase FliI YscN family K02412 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004793 417.0
DYD3_k127_1823236_3 Fis family transcriptional regulator K10941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 374.0
DYD3_k127_1823236_4 FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 349.0
DYD3_k127_1823236_5 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 312.0
DYD3_k127_1823236_6 Histidine kinase K10942 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001158 262.0
DYD3_k127_1823236_7 flagellar protein FliS K02422 - - 0.00000000000000000000000000003466 126.0
DYD3_k127_1823236_8 Flagellar assembly protein FliH K02411 - - 0.0000000000000000000000002069 113.0
DYD3_k127_1823236_9 Flagellar hook-basal body K02408 - - 0.000000000000000001174 92.0
DYD3_k127_1834350_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 565.0
DYD3_k127_1834350_1 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 539.0
DYD3_k127_1834350_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 456.0
DYD3_k127_1834350_3 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 331.0
DYD3_k127_1834350_4 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003006 276.0
DYD3_k127_1834350_5 Major facilitator superfamily K07552 - - 0.0000000000000000000000000000000000000000212 164.0
DYD3_k127_1834350_6 Hydrolase - - - 0.0000000000000000000000000000000001443 153.0
DYD3_k127_1834350_7 FeoA K04758 - - 0.0000000007394 63.0
DYD3_k127_1834350_8 protein conserved in bacteria K09937 - - 0.00000006489 60.0
DYD3_k127_1838769_0 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 327.0
DYD3_k127_1838769_1 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000004289 232.0
DYD3_k127_1838769_2 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000001846 226.0
DYD3_k127_1838769_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000001576 158.0
DYD3_k127_1838769_5 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000133 91.0
DYD3_k127_1838769_6 Pfam Cupin - - - 0.0002922 49.0
DYD3_k127_184855_0 long-chain fatty acid transport protein - - - 0.0 1244.0
DYD3_k127_184855_1 xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 526.0
DYD3_k127_184855_10 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000000000000000000000000000001092 133.0
DYD3_k127_184855_11 - - - - 0.00000000000000000000000000000001118 133.0
DYD3_k127_184855_12 TIGRFAM conserved repeat domain - - - 0.000000000000000000000000749 110.0
DYD3_k127_184855_2 Peptidase S9 prolyl oligopeptidase active site - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008418 429.0
DYD3_k127_184855_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K01406 - 3.4.24.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 419.0
DYD3_k127_184855_4 ChrR Cupin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005606 304.0
DYD3_k127_184855_5 Protein-tyrosine phosphatase, low molecular weight K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000001292 251.0
DYD3_k127_184855_6 Belongs to the MIP aquaporin (TC 1.A.8) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003112 249.0
DYD3_k127_184855_7 TIGRFAM conserved repeat domain - - - 0.0000000000000000000000000000000000000000000000000000000000003294 224.0
DYD3_k127_184855_8 - - - - 0.0000000000000000000000000000000000000000000000000001458 210.0
DYD3_k127_184855_9 TIGRFAM conserved repeat domain - - - 0.000000000000000000000000000000000001415 153.0
DYD3_k127_1868987_0 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009583 446.0
DYD3_k127_1868987_1 MmgE PrpD family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 372.0
DYD3_k127_1868987_2 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 346.0
DYD3_k127_1868987_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 335.0
DYD3_k127_1868987_4 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000001026 190.0
DYD3_k127_1868987_5 Protein of unknown function (DUF2799) - - - 0.000000000000000000000000000000000000761 147.0
DYD3_k127_1868987_6 - - - - 0.0000000000000000000000000006116 115.0
DYD3_k127_1868987_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000271 117.0
DYD3_k127_1868987_8 - - - - 0.00000005583 59.0
DYD3_k127_1884979_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 538.0
DYD3_k127_1884979_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 365.0
DYD3_k127_1884979_2 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000000003018 161.0
DYD3_k127_1884979_3 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000006687 147.0
DYD3_k127_1884979_4 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.00000000000000000000000000000001404 135.0
DYD3_k127_1884979_5 PFAM CopG domain protein DNA-binding domain protein - - - 0.0000000000001949 75.0
DYD3_k127_1904886_0 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000192 268.0
DYD3_k127_1904886_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000003777 231.0
DYD3_k127_1904886_2 - - - - 0.00000000000000000000000000000000000000003252 154.0
DYD3_k127_1904886_3 Belongs to the GbsR family - - - 0.0000000000000000000000000000000000000001512 153.0
DYD3_k127_1904886_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000004945 136.0
DYD3_k127_1904886_5 amidohydrolase - - - 0.000000000000000000001018 108.0
DYD3_k127_1904886_6 alpha beta K06889 - - 0.0005251 48.0
DYD3_k127_1915537_0 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001572 297.0
DYD3_k127_1915537_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004276 265.0
DYD3_k127_1915537_2 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000009354 94.0
DYD3_k127_1921794_0 Circularly permuted ATP-grasp type 2 - - - 2.336e-224 703.0
DYD3_k127_1921794_1 A predicted alpha-helical domain with a conserved ER motif. - - - 1.043e-220 712.0
DYD3_k127_1921794_10 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 312.0
DYD3_k127_1921794_11 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006976 292.0
DYD3_k127_1921794_12 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005702 254.0
DYD3_k127_1921794_13 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001776 251.0
DYD3_k127_1921794_14 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000414 249.0
DYD3_k127_1921794_15 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000000000000000000000000000881 224.0
DYD3_k127_1921794_16 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000001926 210.0
DYD3_k127_1921794_17 Belongs to the Nudix hydrolase family - - - 0.0000000000000000000000000000000000000000001033 164.0
DYD3_k127_1921794_18 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.0000000000000000000000000000000000000002654 154.0
DYD3_k127_1921794_19 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000000000000000000001333 135.0
DYD3_k127_1921794_2 Diguanylate cyclase - - - 1.45e-215 704.0
DYD3_k127_1921794_20 PFAM MaoC domain protein dehydratase - - - 0.00000000000000000000000000000002014 132.0
DYD3_k127_1921794_21 - - - - 0.00000000000000000000002641 108.0
DYD3_k127_1921794_22 Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state - - - 0.00000000000000000002388 106.0
DYD3_k127_1921794_23 ABC-2 family transporter protein - - - 0.00000000000000005781 93.0
DYD3_k127_1921794_3 lipolytic protein G-D-S-L family - - - 5.258e-199 631.0
DYD3_k127_1921794_4 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 612.0
DYD3_k127_1921794_5 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 490.0
DYD3_k127_1921794_6 COG0147 Anthranilate para-aminobenzoate synthases component I K01665 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.6.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 493.0
DYD3_k127_1921794_7 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 475.0
DYD3_k127_1921794_8 ABC-type multidrug transport system, ATPase component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 338.0
DYD3_k127_1921794_9 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 330.0
DYD3_k127_1932166_0 Tetratricopeptide repeat - - - 1.558e-299 984.0
DYD3_k127_1932166_1 Tetratricopeptide repeat - - - 2.43e-202 649.0
DYD3_k127_1932166_10 COG0457 FOG TPR repeat - - - 0.000000000000000000000000001283 133.0
DYD3_k127_1932166_11 - - - - 0.0000000000002391 80.0
DYD3_k127_1932166_2 LacY proton/sugar symporter K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 584.0
DYD3_k127_1932166_3 phenazine biosynthesis protein PhzF family K06998 - 5.3.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007344 373.0
DYD3_k127_1932166_4 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001147 269.0
DYD3_k127_1932166_5 Glycine zipper - - - 0.000000000000000000000000000000000000000000000002651 182.0
DYD3_k127_1932166_6 - - - - 0.0000000000000000000000000000000000000000000000283 179.0
DYD3_k127_1932166_7 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000000000000000000000001741 168.0
DYD3_k127_1932166_8 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000000000000004601 146.0
DYD3_k127_1932166_9 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000001399 130.0
DYD3_k127_1956226_0 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 460.0
DYD3_k127_1956226_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 388.0
DYD3_k127_1956226_10 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000108 124.0
DYD3_k127_1956226_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000005935 114.0
DYD3_k127_1956226_12 Leucine-rich repeat (LRR) protein - - - 0.000000000000001334 93.0
DYD3_k127_1956226_13 AntiSigma factor - - - 0.00000000000005258 80.0
DYD3_k127_1956226_2 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005261 364.0
DYD3_k127_1956226_3 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003165 326.0
DYD3_k127_1956226_4 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006369 284.0
DYD3_k127_1956226_5 D-alanyl-D-alanine carboxypeptidase K07260 - 3.4.17.14 0.0000000000000000000000000000000000000000000003141 174.0
DYD3_k127_1956226_6 methyltransferase - - - 0.00000000000000000000000000000000000000000002929 167.0
DYD3_k127_1956226_7 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000003339 168.0
DYD3_k127_1956226_8 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000544 161.0
DYD3_k127_1956226_9 Domain of unknown function (DUF4382) - - - 0.0000000000000000000000000000000006367 143.0
DYD3_k127_1976692_0 Involved in arsenical resistance. Thought to form the channel of an arsenite pump - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009883 526.0
DYD3_k127_1976692_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 352.0
DYD3_k127_1976692_2 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 304.0
DYD3_k127_1976692_3 - - - - 0.000000000000000000000277 101.0
DYD3_k127_1976692_4 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.0000000009698 59.0
DYD3_k127_1989687_0 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 - - 0.0 1071.0
DYD3_k127_1989687_1 General Secretion Pathway protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006204 481.0
DYD3_k127_1989687_2 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0050896,GO:0051087 - 0.00000000000000000000000000000000000000001125 155.0
DYD3_k127_1989687_3 Type II secretion system protein C - - - 0.000000000000000000000000000000000000004961 157.0
DYD3_k127_1989687_4 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000001524 93.0
DYD3_k127_1989687_5 COG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.000000000000000008761 92.0
DYD3_k127_2001580_0 C-terminus of AA_permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 515.0
DYD3_k127_2001580_1 Putative glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 519.0
DYD3_k127_2001580_10 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 354.0
DYD3_k127_2001580_11 kynureninase activity K00486,K01556 GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016491,GO:0016787,GO:0016822,GO:0016823,GO:0019439,GO:0019441,GO:0019748,GO:0019752,GO:0030429,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0044550,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0055114,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.14.13.9,3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 357.0
DYD3_k127_2001580_12 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 340.0
DYD3_k127_2001580_13 PFAM Glutamine cyclotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003659 301.0
DYD3_k127_2001580_14 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005437 308.0
DYD3_k127_2001580_15 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 303.0
DYD3_k127_2001580_16 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004234 295.0
DYD3_k127_2001580_17 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000028,GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070475,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140102,GO:1901360,GO:1901363 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001244 273.0
DYD3_k127_2001580_18 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000231 260.0
DYD3_k127_2001580_19 Activator of Hsp90 ATPase 1 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005641 250.0
DYD3_k127_2001580_2 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005377 491.0
DYD3_k127_2001580_20 PFAM SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001153 254.0
DYD3_k127_2001580_21 3-hydroxyanthranilic acid dioxygenase K00452 - 1.13.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000001415 243.0
DYD3_k127_2001580_22 Nucleotidyl transferase K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000001515 242.0
DYD3_k127_2001580_23 maleylacetoacetate isomerase K01801 - 5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000002163 241.0
DYD3_k127_2001580_24 Domain of unknown function (DUF1993) K09983 - - 0.000000000000000000000000000000000000000000000000000000003246 205.0
DYD3_k127_2001580_25 Acetyltransferase (GNAT) domain K03817 - - 0.0000000000000000000000000000000000000000000000000005436 191.0
DYD3_k127_2001580_26 transcriptional regulator K13653 - - 0.000000000000000000000000000000000000000007918 166.0
DYD3_k127_2001580_27 - - - - 0.00000000000000000000000000000000000000003847 164.0
DYD3_k127_2001580_28 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.00000000000000000000000000000000000006391 145.0
DYD3_k127_2001580_29 Thioredoxin-like K01829 - 5.3.4.1 0.00000000000001116 81.0
DYD3_k127_2001580_3 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016822,GO:0016823,GO:0019439,GO:0019441,GO:0019752,GO:0030429,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.7.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007572 468.0
DYD3_k127_2001580_30 - - - - 0.00000000003937 74.0
DYD3_k127_2001580_4 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 473.0
DYD3_k127_2001580_5 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 458.0
DYD3_k127_2001580_6 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 423.0
DYD3_k127_2001580_7 metal ion transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 403.0
DYD3_k127_2001580_8 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 369.0
DYD3_k127_2001580_9 Citrate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 367.0
DYD3_k127_2017595_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 306.0
DYD3_k127_2017595_1 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000004691 229.0
DYD3_k127_2017595_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000003376 151.0
DYD3_k127_2017595_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000007823 141.0
DYD3_k127_2047175_0 PFAM Ammonium Transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006066 557.0
DYD3_k127_2047175_1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 530.0
DYD3_k127_2047175_10 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K02484,K07640,K07642 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000001535 235.0
DYD3_k127_2047175_11 Belongs to the P(II) protein family K04751,K04752 - - 0.000000000000000000000000000000000000000000000000007624 188.0
DYD3_k127_2047175_12 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000000000000000000000000001234 184.0
DYD3_k127_2047175_13 PFAM SH3 type 3 K07184 - - 0.00001384 56.0
DYD3_k127_2047175_2 Peptidase M16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 462.0
DYD3_k127_2047175_3 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 444.0
DYD3_k127_2047175_4 Transcriptional regulator K06714,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009352 441.0
DYD3_k127_2047175_5 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 409.0
DYD3_k127_2047175_6 DNA repair photolyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 403.0
DYD3_k127_2047175_7 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000155 284.0
DYD3_k127_2047175_8 Two component transcriptional regulator, winged helix family K07662,K19610 GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010810,GO:0019219,GO:0019222,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000002276 234.0
DYD3_k127_2047175_9 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000002206 246.0
DYD3_k127_2070160_0 TIGRFAM ATP-dependent helicase HrpA K03578 - 3.6.4.13 2.102e-304 985.0
DYD3_k127_2070160_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 5.034e-221 701.0
DYD3_k127_2070160_10 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000004871 238.0
DYD3_k127_2070160_11 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0031224,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.41,2.7.8.5 0.000000000000000000000000000000000000000000000000000000000005696 216.0
DYD3_k127_2070160_12 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000000000000000000000000000000000000000006436 220.0
DYD3_k127_2070160_13 Uncharacterized protein family, UPF0114 - - - 0.000000000000000000000000000000000000000000000002461 182.0
DYD3_k127_2070160_14 DNA-binding protein with PD1-like DNA-binding motif K06934 - - 0.000000000000000000000000000000000000000000000003311 192.0
DYD3_k127_2070160_15 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000005301 182.0
DYD3_k127_2070160_16 Belongs to the 'phage' integrase family K21039 GO:0003674,GO:0005488,GO:0005515,GO:0046982,GO:0046983 - 0.0000000000000000000000000000004704 137.0
DYD3_k127_2070160_17 Domain of unknown function (DUF305) - - - 0.00000000000000000000000000008717 124.0
DYD3_k127_2070160_18 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000002213 117.0
DYD3_k127_2070160_19 - - - - 0.000000000000000000004092 100.0
DYD3_k127_2070160_2 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 584.0
DYD3_k127_2070160_20 - - - - 0.0000000000000000000503 100.0
DYD3_k127_2070160_21 SnoaL-like domain - - - 0.0000000008038 67.0
DYD3_k127_2070160_22 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18306 - - 0.0000000009077 66.0
DYD3_k127_2070160_24 Phosphoesterase PA-phosphatase related - - - 0.0000001463 60.0
DYD3_k127_2070160_25 - - - - 0.0009916 48.0
DYD3_k127_2070160_3 Belongs to the peptidase M50B family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004859 444.0
DYD3_k127_2070160_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 361.0
DYD3_k127_2070160_5 BON domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 365.0
DYD3_k127_2070160_6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008769 318.0
DYD3_k127_2070160_7 Histidine kinase K07637 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009307 292.0
DYD3_k127_2070160_8 Protein of unknown function (DUF475) K09799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007043 272.0
DYD3_k127_2070160_9 Domain of unknown function (DUF305) - - - 0.000000000000000000000000000000000000000000000000000000000000000003105 235.0
DYD3_k127_2112005_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009876 335.0
DYD3_k127_2112005_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 331.0
DYD3_k127_2112005_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 316.0
DYD3_k127_2112005_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 296.0
DYD3_k127_2112005_4 PFAM Bacterial regulatory proteins, gntR family K07979 - - 0.00000000000000000000000000006085 122.0
DYD3_k127_2112005_5 - - - - 0.00000000000000000000001016 114.0
DYD3_k127_2121123_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 9.263e-203 644.0
DYD3_k127_2121123_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 383.0
DYD3_k127_2121123_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 373.0
DYD3_k127_2121123_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000004039 264.0
DYD3_k127_2121123_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000004696 161.0
DYD3_k127_2121123_5 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0001032 45.0
DYD3_k127_213449_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1130.0
DYD3_k127_213449_1 MacB-like periplasmic core domain - - - 3.887e-244 781.0
DYD3_k127_213449_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 568.0
DYD3_k127_213449_3 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000257 250.0
DYD3_k127_213449_4 LysR substrate binding domain K03566 - - 0.00000000000000000000000000000000000000000000000000000000000000004815 235.0
DYD3_k127_2150565_0 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 593.0
DYD3_k127_2150565_1 Amidohydrolase K07045,K14333,K20941 - 4.1.1.103,4.1.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 458.0
DYD3_k127_2150565_10 Dehydrogenase K21430 - - 0.0000000000000008222 84.0
DYD3_k127_2150565_2 Sugar (and other) transporter K08195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 366.0
DYD3_k127_2150565_3 - - - - 0.000000000000000000000000000000000000000006371 168.0
DYD3_k127_2150565_4 - - - - 0.00000000000000000000000000000000001925 148.0
DYD3_k127_2150565_5 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.00000000000000000000000000000000006221 139.0
DYD3_k127_2150565_6 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000006783 140.0
DYD3_k127_2150565_7 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000006113 131.0
DYD3_k127_2150565_8 Protein of unknown function (DUF805) - - - 0.000000000000000000000000000008706 130.0
DYD3_k127_2150565_9 - - - - 0.0000000000000000001718 97.0
DYD3_k127_2176533_0 PFAM Amidohydrolase 3 - - - 7.57e-201 644.0
DYD3_k127_2176533_1 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 574.0
DYD3_k127_2176533_10 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 341.0
DYD3_k127_2176533_11 HlyD family secretion protein K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 325.0
DYD3_k127_2176533_12 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001027 293.0
DYD3_k127_2176533_13 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001461 244.0
DYD3_k127_2176533_14 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000001966 254.0
DYD3_k127_2176533_15 NmrA-like family K19267 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000001771 249.0
DYD3_k127_2176533_16 - - - - 0.00000000000000000000000000000000000000000000000000000001083 205.0
DYD3_k127_2176533_17 phenylacetate-CoA ligase activity - - - 0.0000000000000000000000000000000000000000000000007853 184.0
DYD3_k127_2176533_18 CcdB protein K19163 - - 0.000000000000000000000000000000000004098 141.0
DYD3_k127_2176533_19 Protein conserved in bacteria - - - 0.0000000000000000000000000000004955 132.0
DYD3_k127_2176533_2 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 570.0
DYD3_k127_2176533_20 GntR family transcriptional regulator K07979 - - 0.000000000000000000000000000002568 123.0
DYD3_k127_2176533_21 transcriptional regulators - - - 0.00000000000000000000000000001092 121.0
DYD3_k127_2176533_22 Winged helix-turn-helix DNA-binding - - - 0.00000000000000000000000000215 115.0
DYD3_k127_2176533_23 SNARE associated Golgi protein - - - 0.00000000000000000001459 98.0
DYD3_k127_2176533_24 Post-segregation antitoxin CcdA K19164 - - 0.00000000000000003562 92.0
DYD3_k127_2176533_25 DNA-templated transcription, initiation K03088 - - 0.000000000000001786 86.0
DYD3_k127_2176533_26 - - - - 0.00000000000002852 78.0
DYD3_k127_2176533_27 - - - - 0.0000000000007215 80.0
DYD3_k127_2176533_28 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0002844 47.0
DYD3_k127_2176533_29 COG1136 ABC-type antimicrobial peptide transport system ATPase component K02003 - - 0.000611 46.0
DYD3_k127_2176533_3 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 528.0
DYD3_k127_2176533_30 Domain of unknown function (DUF4252) - - - 0.0008313 49.0
DYD3_k127_2176533_4 Pfam:HipA_N K07154 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008799 461.0
DYD3_k127_2176533_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 456.0
DYD3_k127_2176533_6 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514 442.0
DYD3_k127_2176533_7 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 413.0
DYD3_k127_2176533_8 HupE / UreJ protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005037 394.0
DYD3_k127_2176533_9 COG3264 Small-conductance mechanosensitive channel K05802 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 371.0
DYD3_k127_2182535_0 COG2217 Cation transport ATPase K01533 - 3.6.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 608.0
DYD3_k127_2182535_1 TIGRFAM cytochrome c oxidase accessory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 579.0
DYD3_k127_2182535_10 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000008701 59.0
DYD3_k127_2182535_2 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005156 316.0
DYD3_k127_2182535_3 UPF0056 membrane protein K05595 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000002833 200.0
DYD3_k127_2182535_4 Acyl-CoA thioesterase K10805 - - 0.00000000000000000000000000000000000000183 148.0
DYD3_k127_2182535_5 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.0000000000000000000000000000000001305 143.0
DYD3_k127_2182535_6 FixH K09926 - - 0.00000000000000000001642 98.0
DYD3_k127_2182535_7 - - - - 0.000000000001334 73.0
DYD3_k127_2182535_8 Cytochrome oxidase maturation protein - - - 0.000000000001675 71.0
DYD3_k127_2182535_9 Cbb3-type cytochrome oxidase K00407 - - 0.0000000001219 64.0
DYD3_k127_2184896_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0 1055.0
DYD3_k127_2184896_1 L-lactate permease K03303 - - 3.492e-195 623.0
DYD3_k127_2184896_2 PFAM Fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 454.0
DYD3_k127_2184896_5 - - - - 0.00000000000000000000000000000001852 134.0
DYD3_k127_2184896_6 response to abiotic stimulus K06867 - - 0.00000000000000000004191 96.0
DYD3_k127_2198636_0 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 337.0
DYD3_k127_2198636_1 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 323.0
DYD3_k127_2198636_2 Activator of Hsp90 ATPase - - - 0.00000000000000000000000000000000000000000000007354 189.0
DYD3_k127_2198636_3 - - - - 0.0000000000000000000000000000000001376 139.0
DYD3_k127_2198636_4 PFAM regulatory protein, ArsR - - - 0.00000000000000000000000000000000652 136.0
DYD3_k127_2198636_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000007122 96.0
DYD3_k127_2198636_6 - - - - 0.000000000000000004285 93.0
DYD3_k127_2198636_7 - - - - 0.00000000000007911 78.0
DYD3_k127_2221870_0 MmgE/PrpD family - - - 4.708e-200 644.0
DYD3_k127_2221870_1 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 331.0
DYD3_k127_2221870_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 306.0
DYD3_k127_2221870_3 - - - - 0.00000000000002113 83.0
DYD3_k127_223454_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1004.0
DYD3_k127_223454_1 MacB-like periplasmic core domain - - - 2.214e-221 715.0
DYD3_k127_223454_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000000000000000000000000004341 150.0
DYD3_k127_223454_3 toxic component of a K07065 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0040008,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0045926,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 0.000000000004038 72.0
DYD3_k127_223454_4 Resolvase - - - 0.00000002322 58.0
DYD3_k127_2257142_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 616.0
DYD3_k127_2257142_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 501.0
DYD3_k127_2257142_10 Protein of unknown function, DUF484 K09921 - - 0.0000000000000000000000000000000001239 148.0
DYD3_k127_2257142_11 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000006979 133.0
DYD3_k127_2257142_12 enzyme of heme biosynthesis K02496,K13543 - 2.1.1.107,4.2.1.75 0.000000000000000000000000974 119.0
DYD3_k127_2257142_13 von Willebrand factor (vWF) type A domain - - - 0.0000000000000001305 86.0
DYD3_k127_2257142_14 Domain of unknown function (DUF4124) - - - 0.0002332 50.0
DYD3_k127_2257142_2 Belongs to the 'phage' integrase family. XerC subfamily K03733 GO:0000150,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008907,GO:0009009,GO:0009037,GO:0009987,GO:0015074,GO:0032991,GO:0034641,GO:0042150,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0071139,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 328.0
DYD3_k127_2257142_3 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008382 297.0
DYD3_k127_2257142_4 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001765 286.0
DYD3_k127_2257142_5 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000004267 255.0
DYD3_k127_2257142_6 Response regulator of the LytR AlgR family K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000166 248.0
DYD3_k127_2257142_7 VirC1 protein K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000007846 234.0
DYD3_k127_2257142_8 HemY domain protein K02498 - - 0.000000000000000000000000000000000000000000000000001946 207.0
DYD3_k127_2257142_9 Protein of unknown function (DUF971) - - - 0.000000000000000000000000000000000000008382 148.0
DYD3_k127_225745_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003887 397.0
DYD3_k127_225745_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 313.0
DYD3_k127_225745_2 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 305.0
DYD3_k127_2292508_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 2.077e-270 872.0
DYD3_k127_2292508_1 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 8.421e-194 625.0
DYD3_k127_2292508_2 Drug resistance transporter Bcr CflA subfamily K07552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003478 254.0
DYD3_k127_2304458_0 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000000000000314 183.0
DYD3_k127_2304458_1 Subtilase family - - - 0.0000000000000000000000000000000004989 140.0
DYD3_k127_2304458_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000001938 143.0
DYD3_k127_2304458_3 RNA-binding protein - - - 0.00000000000000000000000000004785 121.0
DYD3_k127_2304458_4 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000002173 117.0
DYD3_k127_2305060_0 UPF0313 protein - - - 0.0 1058.0
DYD3_k127_2305060_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 1.832e-285 887.0
DYD3_k127_2305060_10 Methionine synthase K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 480.0
DYD3_k127_2305060_11 COG0651 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit K05568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 489.0
DYD3_k127_2305060_12 PFAM NADH Ubiquinone plastoquinone (complex I) K05568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 461.0
DYD3_k127_2305060_13 PFAM Band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 414.0
DYD3_k127_2305060_14 MatE K03327 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 416.0
DYD3_k127_2305060_15 PFAM Na H antiporter MnhB subunit-related protein K05566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 377.0
DYD3_k127_2305060_16 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 385.0
DYD3_k127_2305060_17 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 386.0
DYD3_k127_2305060_18 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 355.0
DYD3_k127_2305060_19 Provides the (R)-glutamate required for cell wall biosynthesis K01776 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 334.0
DYD3_k127_2305060_2 Outer membrane protein beta-barrel family - - - 1.06e-281 887.0
DYD3_k127_2305060_20 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 300.0
DYD3_k127_2305060_21 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 289.0
DYD3_k127_2305060_22 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005984 275.0
DYD3_k127_2305060_23 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon K03524 GO:0000166,GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004077,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0006082,GO:0006464,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009305,GO:0009374,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0017053,GO:0017076,GO:0017144,GO:0018130,GO:0018271,GO:0019538,GO:0019752,GO:0019842,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033218,GO:0033293,GO:0034641,GO:0035639,GO:0036094,GO:0036211,GO:0042364,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046983,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681,GO:1990837 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000000000000002153 263.0
DYD3_k127_2305060_24 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000001715 248.0
DYD3_k127_2305060_25 TipAS antibiotic-recognition domain K21744 - - 0.000000000000000000000000000000000000000000000000000000000000001448 226.0
DYD3_k127_2305060_26 Transcriptional K03719 - - 0.00000000000000000000000000000000000000000000000000000000000007523 216.0
DYD3_k127_2305060_27 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000001846 216.0
DYD3_k127_2305060_28 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000004871 212.0
DYD3_k127_2305060_29 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000008389 211.0
DYD3_k127_2305060_3 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 1.706e-240 754.0
DYD3_k127_2305060_30 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.0000000000000000000000000000000000000000000000000002713 199.0
DYD3_k127_2305060_31 belongs to the thioredoxin family K03671,K03672 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.1.8 0.00000000000000000000000000000000000000000000000005197 182.0
DYD3_k127_2305060_32 PFAM periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000003127 189.0
DYD3_k127_2305060_33 PRC-barrel domain - - - 0.000000000000000000000000000000000000000000001462 168.0
DYD3_k127_2305060_34 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000001123 166.0
DYD3_k127_2305060_35 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000005415 162.0
DYD3_k127_2305060_36 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins K03790 GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008999,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031365,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0071704,GO:1901564 2.3.1.128 0.0000000000000000000000000000000000000001709 156.0
DYD3_k127_2305060_37 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000001076 150.0
DYD3_k127_2305060_38 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K05567 - - 0.00000000000000000000000000000000001506 146.0
DYD3_k127_2305060_39 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000000000003706 130.0
DYD3_k127_2305060_4 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03314 GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006873,GO:0006885,GO:0008150,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010226,GO:0015075,GO:0015077,GO:0015078,GO:0015081,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015385,GO:0015491,GO:0015672,GO:0016020,GO:0019725,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030004,GO:0030641,GO:0034220,GO:0035725,GO:0042221,GO:0042592,GO:0044464,GO:0045851,GO:0046873,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516,GO:1902600 - 1.324e-207 658.0
DYD3_k127_2305060_40 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000004114 136.0
DYD3_k127_2305060_41 PFAM cation antiporter K05569 - - 0.000000000000000000000000000005246 134.0
DYD3_k127_2305060_42 Protein conserved in bacteria - - - 0.0000000000000000000000000002607 118.0
DYD3_k127_2305060_43 - - - - 0.0000000000000000000000124 112.0
DYD3_k127_2305060_44 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000006271 108.0
DYD3_k127_2305060_45 Na+/H+ antiporter subunit K05571 - - 0.0000000000000000000001391 105.0
DYD3_k127_2305060_46 Multiple resistance and pH regulation protein F (MrpF / PhaF) K05570 - - 0.000000000000000000001453 106.0
DYD3_k127_2305060_47 AntiSigma factor - - - 0.00000000000000000001555 100.0
DYD3_k127_2305060_48 cellular response to DNA damage stimulus K07340 - - 0.0000000000000000001504 94.0
DYD3_k127_2305060_49 Sporulation related domain - - - 0.0000000000000000733 93.0
DYD3_k127_2305060_5 PFAM NADH Ubiquinone plastoquinone (complex I) K05568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 595.0
DYD3_k127_2305060_50 sequence-specific DNA binding - - - 0.00000000000007671 80.0
DYD3_k127_2305060_51 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000004971 62.0
DYD3_k127_2305060_52 - - - - 0.0004832 49.0
DYD3_k127_2305060_6 protease with the C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005475 582.0
DYD3_k127_2305060_7 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 556.0
DYD3_k127_2305060_8 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 525.0
DYD3_k127_2305060_9 Multicopper oxidase K04753 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 499.0
DYD3_k127_2308018_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 598.0
DYD3_k127_2308018_1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009299 531.0
DYD3_k127_2308018_11 - - - - 0.00000008476 62.0
DYD3_k127_2308018_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 429.0
DYD3_k127_2308018_3 PFAM HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 290.0
DYD3_k127_2308018_4 including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003983 256.0
DYD3_k127_2308018_5 auxin efflux carrier family protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000001064 227.0
DYD3_k127_2308018_6 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000002183 178.0
DYD3_k127_2308018_7 NADP transhydrogenase K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000002033 162.0
DYD3_k127_2308018_8 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000003364 147.0
DYD3_k127_2308018_9 Protein of unknown function (DUF3106) - - - 0.00000000000000000049 95.0
DYD3_k127_2318469_0 Tannase and feruloyl esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 452.0
DYD3_k127_2318469_1 Alkaline and neutral invertase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005494 431.0
DYD3_k127_2318469_10 Alcohol dehydrogenase GroES-associated - - - 0.00003375 50.0
DYD3_k127_2318469_11 Alcohol dehydrogenase GroES-like domain - - - 0.00004456 48.0
DYD3_k127_2318469_2 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008538 340.0
DYD3_k127_2318469_3 Major Facilitator K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 342.0
DYD3_k127_2318469_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000178 290.0
DYD3_k127_2318469_5 - - - - 0.000000000000000000000000000000000000000000000000001964 207.0
DYD3_k127_2318469_6 SnoaL-like domain - - - 0.0000000000000000000000000000000000000000000000000302 183.0
DYD3_k127_2318469_7 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000009833 149.0
DYD3_k127_2318469_8 - - - - 0.0000000000000000000000002145 120.0
DYD3_k127_2336368_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0 1040.0
DYD3_k127_2336368_1 synthase K06044 - 5.4.99.15 0.0 1030.0
DYD3_k127_2336368_10 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000104 257.0
DYD3_k127_2336368_11 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001407 252.0
DYD3_k127_2336368_12 PFAM lipopolysaccharide biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000639 253.0
DYD3_k127_2336368_13 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000001114 235.0
DYD3_k127_2336368_14 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000001516 244.0
DYD3_k127_2336368_15 Predicted membrane protein (DUF2231) - - - 0.0000000000000000000000000000000000000000000000000001698 193.0
DYD3_k127_2336368_16 Capsular exopolysaccharide family K08252,K16692 - 2.7.10.1 0.0000000000000000000000000000000000000000000000003356 186.0
DYD3_k127_2336368_17 polysaccharide export protein K01991 - - 0.000000000000000000000000000000000000000000000001732 180.0
DYD3_k127_2336368_18 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000006669 184.0
DYD3_k127_2336368_19 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000566 178.0
DYD3_k127_2336368_2 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 610.0
DYD3_k127_2336368_20 CBS domain - - - 0.00000000000000000000000000000000000001931 156.0
DYD3_k127_2336368_21 - - - - 0.0000000000000000000000000000000000003806 150.0
DYD3_k127_2336368_22 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000009376 114.0
DYD3_k127_2336368_23 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000000000000007888 96.0
DYD3_k127_2336368_24 Domain of unknown function (DUF4383) - - - 0.000000000001593 74.0
DYD3_k127_2336368_26 protein kinase activity K12132 - 2.7.11.1 0.0000000006858 72.0
DYD3_k127_2336368_27 PFAM PRC-barrel domain protein - - - 0.000000005492 60.0
DYD3_k127_2336368_28 Domain of unknown function (DUF305) K08995 - - 0.00000001012 63.0
DYD3_k127_2336368_3 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 567.0
DYD3_k127_2336368_30 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0006304 53.0
DYD3_k127_2336368_4 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 454.0
DYD3_k127_2336368_5 Pfam:UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009903 344.0
DYD3_k127_2336368_6 glycosyl transferase - GO:0000271,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0030258,GO:0030259,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 315.0
DYD3_k127_2336368_7 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007924 299.0
DYD3_k127_2336368_8 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001546 267.0
DYD3_k127_2336368_9 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002694 276.0
DYD3_k127_2363869_0 Aldehyde dehydrogenase family - - - 6.423e-202 638.0
DYD3_k127_2363869_1 oxidase, subunit K00425 - 1.10.3.14 7.221e-194 614.0
DYD3_k127_2363869_2 COG1294 Cytochrome bd-type quinol oxidase, subunit 2 K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 424.0
DYD3_k127_2363869_3 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000007895 88.0
DYD3_k127_2415809_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1131.0
DYD3_k127_2415809_1 oxidoreductases (related to aryl-alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 344.0
DYD3_k127_2415809_2 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 291.0
DYD3_k127_2415809_3 nucleotidyltransferase activity K01154,K07076 - 3.1.21.3 0.000000000000000000000000000000000000001877 159.0
DYD3_k127_2415809_4 TonB system transport protein ExbD K03559 - - 0.000000000000000148 83.0
DYD3_k127_2415809_5 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.0000000002053 68.0
DYD3_k127_2454387_0 threonyl-tRNA aminoacylation - - - 2.01e-261 814.0
DYD3_k127_2454387_1 Flagellar hook protein FlgE K02390 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003055 479.0
DYD3_k127_2454387_10 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.0000000000000000000000000000000000000000000000000000000000001809 219.0
DYD3_k127_2454387_11 Flagellar rod assembly protein muramidase FlgJ K02395 GO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0097588 - 0.000000000000000000000000000000000000000000000000006134 201.0
DYD3_k127_2454387_12 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0000000000000000000000000000000000000000000006712 177.0
DYD3_k127_2454387_13 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000000000000000000004168 153.0
DYD3_k127_2454387_14 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.00000000000000000000000000004705 129.0
DYD3_k127_2454387_15 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.000000000000000000000000003485 122.0
DYD3_k127_2454387_16 PilZ domain - - - 0.000000000000002376 79.0
DYD3_k127_2454387_17 flagellar protein FlaG K06603 - - 0.000000000002456 72.0
DYD3_k127_2454387_18 Flagellar biosynthesis type III secretory pathway chaperone K02399 - - 0.0000000028 63.0
DYD3_k127_2454387_19 COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor) K02398 - - 0.000001099 55.0
DYD3_k127_2454387_2 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 467.0
DYD3_k127_2454387_21 LysM domain - - - 0.000843 52.0
DYD3_k127_2454387_3 Belongs to the flagella basal body rod proteins family K02396 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 444.0
DYD3_k127_2454387_4 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 404.0
DYD3_k127_2454387_5 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003672 352.0
DYD3_k127_2454387_6 basal body rod K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005031 352.0
DYD3_k127_2454387_7 TIGRFAM Flagellar hook-associated protein 3 K02397 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009988 315.0
DYD3_k127_2454387_8 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 307.0
DYD3_k127_2454387_9 Belongs to the flagella basal body rod proteins family K02391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004155 259.0
DYD3_k127_2458131_0 PFAM Orn DAP Arg decarboxylase 2 K01585 - 4.1.1.19 1.113e-214 690.0
DYD3_k127_2458131_1 PFAM deoxyhypusine synthase K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 537.0
DYD3_k127_2458131_10 Stage II sporulation protein E - - - 0.00000000000000000000000000000000000000000000000000000000000000000002525 249.0
DYD3_k127_2458131_11 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000009506 226.0
DYD3_k127_2458131_12 PFAM Sulfate transporter antisigma-factor antagonist STAS K17762 - - 0.0000000000000000000000000000000000000000000001381 170.0
DYD3_k127_2458131_13 Histidine kinase-like ATPase domain K17752 - 2.7.11.1 0.0000000000000000000000000000000000000000000004823 172.0
DYD3_k127_2458131_14 Uncharacterized ACR, COG1678 K07735 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000009185 133.0
DYD3_k127_2458131_2 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 451.0
DYD3_k127_2458131_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 436.0
DYD3_k127_2458131_4 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 420.0
DYD3_k127_2458131_5 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004845 413.0
DYD3_k127_2458131_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 400.0
DYD3_k127_2458131_7 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009993 339.0
DYD3_k127_2458131_8 RsbT co-antagonist protein rsbRD N-terminal domain K17763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008907 323.0
DYD3_k127_2458131_9 Glutamate-cysteine ligase family 2(GCS2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001967 246.0
DYD3_k127_2459925_0 Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 488.0
DYD3_k127_2459925_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 391.0
DYD3_k127_2459925_2 lipoprotein biosynthetic process K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 306.0
DYD3_k127_2459925_3 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000000000008635 183.0
DYD3_k127_2459925_4 Protein of unknown function (DUF962) - - - 0.00000000000000000000000000000000000000000006488 168.0
DYD3_k127_2459925_5 Domain of unknown function (DUF4437) - - - 0.00000000000000000000000000000000000915 143.0
DYD3_k127_2459925_6 - - - - 0.00000000000004072 78.0
DYD3_k127_2459925_7 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000002814 71.0
DYD3_k127_2461034_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 1.855e-293 909.0
DYD3_k127_2461034_1 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009164 602.0
DYD3_k127_2461034_2 Helicase K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 402.0
DYD3_k127_2461034_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 361.0
DYD3_k127_2461034_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 346.0
DYD3_k127_2461034_5 protein methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 289.0
DYD3_k127_2461034_6 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000001324 238.0
DYD3_k127_2461034_7 Protein conserved in bacteria - - - 0.0000001815 60.0
DYD3_k127_2474764_0 efflux transmembrane transporter activity - - - 7.841e-209 683.0
DYD3_k127_2474764_1 glucose sorbosone - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 328.0
DYD3_k127_2474764_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003516 271.0
DYD3_k127_2474764_5 - - - - 0.00000000000000000000000000000000000000000000001169 184.0
DYD3_k127_2474764_6 - - - - 0.000000000000000000000000000000000000008512 149.0
DYD3_k127_2474764_7 - - - - 0.00000000000000000000000000000123 129.0
DYD3_k127_2474764_8 - - - - 0.000000000000000000000001077 116.0
DYD3_k127_2474764_9 - - - - 0.00000000001788 72.0
DYD3_k127_2484884_0 GTP-binding protein TypA K06207 - - 8.616e-287 891.0
DYD3_k127_2484884_1 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 297.0
DYD3_k127_2484884_2 Belongs to the UPF0502 family K09915 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000002631 220.0
DYD3_k127_2484884_3 - - - - 0.000000000000000000000003807 107.0
DYD3_k127_2484884_4 DNA-binding transcription factor activity K03892 GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0043170,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0046685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000005551 95.0
DYD3_k127_2495780_0 COG1473 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 552.0
DYD3_k127_2495780_1 - - - - 0.00000000000000000000000000000000000000000000000000000000004013 228.0
DYD3_k127_2495780_2 PFAM NAD binding domain of 6-phosphogluconate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.00000000000000000000000000000000000000002642 157.0
DYD3_k127_2495780_3 - - - - 0.000000000000000000000000000000666 126.0
DYD3_k127_2495780_4 - - - - 0.000000000000000000000000002047 129.0
DYD3_k127_2495780_5 DnaJ molecular chaperone homology domain - - - 0.000000000000000000001032 104.0
DYD3_k127_2527644_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 2.215e-294 917.0
DYD3_k127_2527644_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 GO:0000166,GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008144,GO:0008150,GO:0008152,GO:0008878,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016043,GO:0016051,GO:0016208,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0022607,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033692,GO:0034637,GO:0034645,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0046872,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070566,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901576 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003078 310.0
DYD3_k127_2527644_2 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001831 239.0
DYD3_k127_2527644_3 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000008372 160.0
DYD3_k127_2527644_4 Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) K17763 - - 0.000000000000000000000000000226 130.0
DYD3_k127_2527644_5 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.000000000000000000001057 101.0
DYD3_k127_2548754_0 histidine kinase A domain protein - - - 1.597e-296 918.0
DYD3_k127_2548754_1 Ribonucleotide reductase, barrel domain K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 619.0
DYD3_k127_2548754_10 MerR HTH family regulatory protein K18997 - - 0.00000000000000000001689 93.0
DYD3_k127_2548754_11 - - - - 0.000000002186 63.0
DYD3_k127_2548754_2 RNA-metabolising metallo-beta-lactamase K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003463 537.0
DYD3_k127_2548754_3 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005718 464.0
DYD3_k127_2548754_4 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 407.0
DYD3_k127_2548754_5 DnaJ C terminal domain K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 340.0
DYD3_k127_2548754_6 Trypsin-like peptidase domain K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.107 0.000000000000000000000000000000000000000000000001641 181.0
DYD3_k127_2548754_7 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.000000000000000000000000000000000000000000001594 170.0
DYD3_k127_2548754_8 - - - - 0.00000000000000000000000308 106.0
DYD3_k127_2548754_9 Universal stress protein family K14055 - - 0.0000000000000000000005424 109.0
DYD3_k127_2577324_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1127.0
DYD3_k127_2577324_1 PFAM FAD dependent oxidoreductase - - - 7.82e-203 642.0
DYD3_k127_2577324_10 Sulfotransferase family - - - 0.0000000000000000000000000000000000000003846 165.0
DYD3_k127_2577324_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000023 142.0
DYD3_k127_2577324_13 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000002776 82.0
DYD3_k127_2577324_14 - - - - 0.000001911 61.0
DYD3_k127_2577324_15 FAD binding domain - - - 0.0003341 55.0
DYD3_k127_2577324_2 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 586.0
DYD3_k127_2577324_3 Outer membrane cobalamin receptor protein K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006599 522.0
DYD3_k127_2577324_4 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 460.0
DYD3_k127_2577324_5 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 381.0
DYD3_k127_2577324_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 316.0
DYD3_k127_2577324_7 Putative 2OG-Fe(II) oxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000009679 232.0
DYD3_k127_2577324_8 lactoylglutathione lyase activity K03088 - - 0.0000000000000000000000000000000000000000000000000008343 196.0
DYD3_k127_2577324_9 PFAM Exopolysaccharide synthesis, ExoD - - - 0.000000000000000000000000000000000000000000000007241 183.0
DYD3_k127_2590916_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 630.0
DYD3_k127_2590916_1 zinc metalloprotease K11749 GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0043170,GO:0043856,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045152,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006115 394.0
DYD3_k127_2590916_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 353.0
DYD3_k127_2590916_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004771 332.0
DYD3_k127_2590916_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 321.0
DYD3_k127_2590916_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005678 311.0
DYD3_k127_2590916_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000002231 244.0
DYD3_k127_2590916_7 Belongs to the CDS family K00981 GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.41 0.000000000000000000000000000000000000000000000002967 184.0
DYD3_k127_2590916_8 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 4.2.1.59 0.000000000000000000000000000000000000000000544 162.0
DYD3_k127_2590916_9 Belongs to the skp family K06142 - - 0.0000000000000000000000002459 112.0
DYD3_k127_2592755_0 Domain of unknown function (DUF305) - - - 0.0 1045.0
DYD3_k127_2592755_1 Cytochrome c - - - 3.437e-214 679.0
DYD3_k127_2592755_2 TonB dependent receptor K02014,K16089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 561.0
DYD3_k127_2592755_3 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 532.0
DYD3_k127_2592755_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009573 310.0
DYD3_k127_2592755_5 Fructosamine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005111 293.0
DYD3_k127_2592755_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000004146 225.0
DYD3_k127_2592755_7 OmpA-like transmembrane domain - - - 0.00000000001549 76.0
DYD3_k127_2602748_0 Major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002952 509.0
DYD3_k127_2602748_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 513.0
DYD3_k127_2602748_2 Histone deacetylase domain K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005019 373.0
DYD3_k127_2602748_3 unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001157 283.0
DYD3_k127_2602748_4 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000004005 272.0
DYD3_k127_2602748_5 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005524,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000065 216.0
DYD3_k127_2602748_6 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000004535 83.0
DYD3_k127_2619911_0 Tetratricopeptide repeat - - - 4.687e-222 730.0
DYD3_k127_2619911_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 417.0
DYD3_k127_2619911_2 MotA/TolQ/ExbB proton channel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006353 269.0
DYD3_k127_2619911_3 - - - - 0.00000000000000000000000000000000000000000003042 162.0
DYD3_k127_2619911_4 TPR repeat - - - 0.0000000000000000000000000000004001 134.0
DYD3_k127_2619911_5 - - - - 0.0000000000004222 76.0
DYD3_k127_2619911_6 Biopolymer transport protein ExbD/TolR - - - 0.00000000004445 66.0
DYD3_k127_2624454_0 FAD linked oxidase domain protein K05797 - 1.17.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 541.0
DYD3_k127_2624454_1 Helix-turn-helix domain K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 359.0
DYD3_k127_2624454_2 Ion channel K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003836 335.0
DYD3_k127_2624454_3 Belongs to the citrate synthase family K01647 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001885 271.0
DYD3_k127_2624454_4 Ankyrin repeats (3 copies) - - - 0.0000000000002927 74.0
DYD3_k127_2624454_5 COG2199 FOG GGDEF domain - - - 0.000000009418 68.0
DYD3_k127_2624646_0 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 3.231e-262 832.0
DYD3_k127_2624646_1 belongs to the aldehyde dehydrogenase family K09472,K12254 - 1.2.1.54,1.2.1.99 1.682e-195 621.0
DYD3_k127_2624646_10 Preprotein translocase subunit TatD K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 307.0
DYD3_k127_2624646_11 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008605 319.0
DYD3_k127_2624646_12 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000002056 186.0
DYD3_k127_2624646_13 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.000000000000000000000000003769 116.0
DYD3_k127_2624646_14 Bacterial regulatory proteins, tetR family - - - 0.00000000000000003476 90.0
DYD3_k127_2624646_15 Nuclease-related domain - - - 0.0000005358 58.0
DYD3_k127_2624646_16 Tetratricopeptide repeat - - - 0.0001408 52.0
DYD3_k127_2624646_2 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 634.0
DYD3_k127_2624646_3 Threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 466.0
DYD3_k127_2624646_4 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 423.0
DYD3_k127_2624646_5 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 429.0
DYD3_k127_2624646_6 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 391.0
DYD3_k127_2624646_7 Major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 376.0
DYD3_k127_2624646_8 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 359.0
DYD3_k127_2624646_9 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078 344.0
DYD3_k127_2625299_0 OmpA family - - - 0.0 1860.0
DYD3_k127_2625299_1 domain protein - - - 0.0 1071.0
DYD3_k127_2625299_3 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000404 352.0
DYD3_k127_2625299_4 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000002502 242.0
DYD3_k127_2625299_5 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000001454 227.0
DYD3_k127_2625299_6 Shikimate kinase K00851 - 2.7.1.12 0.0000000000000000000000000000000000000000000000000000129 193.0
DYD3_k127_2625299_7 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000002829 171.0
DYD3_k127_2625299_8 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000005454 169.0
DYD3_k127_2625299_9 - - - - 0.0000000000000000023 102.0
DYD3_k127_2642447_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 572.0
DYD3_k127_2642447_1 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 422.0
DYD3_k127_2642447_2 FMN-dependent dehydrogenase K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 322.0
DYD3_k127_2642447_3 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002552 269.0
DYD3_k127_2642447_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000000000000000000000000000000000000000000000002156 188.0
DYD3_k127_2642447_5 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000006736 85.0
DYD3_k127_2642447_6 methyltransferase K04786 - - 0.0000008941 59.0
DYD3_k127_2649689_0 Sodium/calcium exchanger protein K07301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006071 409.0
DYD3_k127_2649689_1 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005954 403.0
DYD3_k127_2649689_10 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000003085 210.0
DYD3_k127_2649689_12 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.0000000003612 66.0
DYD3_k127_2649689_13 Pyruvate kinase K00873 - 2.7.1.40 0.000006327 51.0
DYD3_k127_2649689_2 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 379.0
DYD3_k127_2649689_3 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 367.0
DYD3_k127_2649689_4 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 322.0
DYD3_k127_2649689_5 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002114 282.0
DYD3_k127_2649689_6 Uncharacterized protein conserved in bacteria (DUF2272) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000619 257.0
DYD3_k127_2649689_7 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000001773 255.0
DYD3_k127_2649689_8 Transcriptional regulator K03717 - - 0.00000000000000000000000000000000000000000000000000000000000003135 225.0
DYD3_k127_2649689_9 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000008806 224.0
DYD3_k127_2701761_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.227e-234 735.0
DYD3_k127_2701761_1 Carbohydrate family 9 binding domain-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 428.0
DYD3_k127_2701761_10 - - - - 0.00000000006084 70.0
DYD3_k127_2701761_11 - - - - 0.0000000006143 66.0
DYD3_k127_2701761_12 YMGG-like Gly-zipper - - - 0.000000002804 66.0
DYD3_k127_2701761_2 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008031 359.0
DYD3_k127_2701761_3 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 333.0
DYD3_k127_2701761_4 dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000002202 244.0
DYD3_k127_2701761_5 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000003308 237.0
DYD3_k127_2701761_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000001641 201.0
DYD3_k127_2701761_7 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000245 182.0
DYD3_k127_2701761_8 - - - - 0.00000000000000000000000000000000000001296 154.0
DYD3_k127_2701761_9 SnoaL-like domain - - - 0.0000000000000000008434 100.0
DYD3_k127_2704903_0 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 592.0
DYD3_k127_2704903_1 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000004086 228.0
DYD3_k127_2704903_2 rRNA processing K06968 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.186 0.000000000000000000000000000000000000000000000000000000000002927 228.0
DYD3_k127_2704903_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000139 194.0
DYD3_k127_2704903_4 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000002323 158.0
DYD3_k127_2704903_5 - - - - 0.00000000000000000000001333 107.0
DYD3_k127_2704903_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000000001696 97.0
DYD3_k127_2704903_7 - - - - 0.0000000000000005805 84.0
DYD3_k127_2704903_8 - - - - 0.000000003116 64.0
DYD3_k127_2712085_0 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 610.0
DYD3_k127_2712085_1 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 537.0
DYD3_k127_2712085_10 - - - - 0.0000000000002144 82.0
DYD3_k127_2712085_2 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 470.0
DYD3_k127_2712085_3 Putative vitamin uptake transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 341.0
DYD3_k127_2712085_4 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 302.0
DYD3_k127_2712085_5 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 K03775 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000002646 189.0
DYD3_k127_2712085_6 synthetase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000005831 198.0
DYD3_k127_2712085_7 alpha/beta hydrolase fold K03821 - - 0.0000000000000000000000000000000000001337 152.0
DYD3_k127_2712085_8 PIN domain - - - 0.000000000000000000000000001619 118.0
DYD3_k127_2712085_9 - - - - 0.000000000000004388 85.0
DYD3_k127_2731141_0 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 4.481e-226 718.0
DYD3_k127_2731141_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003863 599.0
DYD3_k127_2731141_10 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000005121 100.0
DYD3_k127_2731141_11 Belongs to the transcriptional regulatory Fis family K03557 GO:0000229,GO:0000785,GO:0000786,GO:0000787,GO:0000789,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0032991,GO:0032993,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044815 - 0.00000000000000000001689 95.0
DYD3_k127_2731141_12 Protein of unknown function (DUF3426) - - - 0.00000000000000008648 92.0
DYD3_k127_2731141_13 Tetratricopeptide repeat - - - 0.0000021 57.0
DYD3_k127_2731141_2 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 581.0
DYD3_k127_2731141_3 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 544.0
DYD3_k127_2731141_4 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000002156 213.0
DYD3_k127_2731141_5 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000009955 189.0
DYD3_k127_2731141_6 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000001316 169.0
DYD3_k127_2731141_7 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000000000000002525 151.0
DYD3_k127_2731141_8 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000004311 121.0
DYD3_k127_2731141_9 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000003018 102.0
DYD3_k127_2742662_0 PDZ-like domain - - - 3.347e-229 743.0
DYD3_k127_2742662_1 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 575.0
DYD3_k127_2742662_2 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 329.0
DYD3_k127_2742662_3 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K18800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 310.0
DYD3_k127_2742662_4 - - - - 0.00000000000000000000000000001494 122.0
DYD3_k127_2742662_5 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000000000000001846 104.0
DYD3_k127_2742662_6 Belongs to the UPF0149 family K09895 - - 0.0000000000000000005722 94.0
DYD3_k127_2742662_7 TIGRFAM TIGR02449 family protein K09892 - - 0.0000000001826 66.0
DYD3_k127_2758064_0 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007951 504.0
DYD3_k127_2758064_1 Subtilase family K17734 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 379.0
DYD3_k127_2758064_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000002488 151.0
DYD3_k127_2786955_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 426.0
DYD3_k127_2786955_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 360.0
DYD3_k127_2786955_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 324.0
DYD3_k127_2786955_3 Belongs to the UPF0276 family K09930 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 294.0
DYD3_k127_2786955_4 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004365 274.0
DYD3_k127_2786955_5 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000005956 193.0
DYD3_k127_2786955_6 Putative DNA-binding domain - - - 0.000000000000000000000000000002794 133.0
DYD3_k127_2786955_7 Predicted integral membrane protein (DUF2282) - - - 0.0000000000000000008849 89.0
DYD3_k127_2819539_0 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit - - - 1.624e-259 815.0
DYD3_k127_2819539_1 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit K12141 - - 1.386e-235 736.0
DYD3_k127_2819539_10 RNA-binding protein - - - 0.00000000000000000000000000002475 120.0
DYD3_k127_2819539_11 copG family - - - 0.000000000000000002093 86.0
DYD3_k127_2819539_12 - - - - 0.000000000001543 79.0
DYD3_k127_2819539_13 Pilus assembly protein PilX K02673 - - 0.000000000004551 79.0
DYD3_k127_2819539_14 hydrolase (HAD superfamily) K07025 - - 0.000001686 51.0
DYD3_k127_2819539_15 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.00002593 48.0
DYD3_k127_2819539_2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 550.0
DYD3_k127_2819539_3 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 394.0
DYD3_k127_2819539_4 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 311.0
DYD3_k127_2819539_5 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006414 248.0
DYD3_k127_2819539_6 NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001703 245.0
DYD3_k127_2819539_7 Prolyl 4-hydroxylase alpha subunit homologues. K00472 - 1.14.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000002111 258.0
DYD3_k127_2819539_8 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000005065 216.0
DYD3_k127_2819539_9 Pilin (bacterial filament) K02650,K02655 - - 0.000000000000000000000000000000000000000000002932 169.0
DYD3_k127_2823866_0 ABC transporter transmembrane region K11085 - - 3.6e-283 887.0
DYD3_k127_2823866_1 PFAM Peptidase M16 K07263 - - 4.627e-273 867.0
DYD3_k127_2823866_2 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007808 589.0
DYD3_k127_2823866_3 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008203 315.0
DYD3_k127_2823866_4 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 309.0
DYD3_k127_2823866_5 Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (lauroyl)-lipid IV(A) K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000001474 222.0
DYD3_k127_2823866_6 Protein of unknown function (DUF2892) - - - 0.00000000000000002963 92.0
DYD3_k127_2823866_7 Phosphatidylethanolamine-binding protein - - - 0.0000000000000004117 87.0
DYD3_k127_2846190_0 TIGRFAM ribonuclease, Rne Rng family K08301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 605.0
DYD3_k127_2846190_1 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 372.0
DYD3_k127_2846190_2 Carbon-nitrogen hydrolase K11206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001223 273.0
DYD3_k127_2846190_3 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000007834 192.0
DYD3_k127_2846190_4 membrane - - - 0.000000005393 67.0
DYD3_k127_2846190_5 TldD PmbA family protein K03568 - - 0.00000008262 57.0
DYD3_k127_2848869_0 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 489.0
DYD3_k127_2848869_1 Glycerol-3-phosphate dehydrogenase K00057 GO:0003674,GO:0003824,GO:0004367,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006072,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0047952,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 336.0
DYD3_k127_2848869_10 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 GO:0001510,GO:0002128,GO:0002130,GO:0002131,GO:0002132,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016427,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052665,GO:0052666,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.207 0.0000000000000000000000000000000000000000000000000000000000003614 217.0
DYD3_k127_2848869_11 - - - - 0.00000000000000000000000000000000000000000000000000003214 202.0
DYD3_k127_2848869_12 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000002153 158.0
DYD3_k127_2848869_13 RNA-binding - - - 0.000000000000000000000000000004513 126.0
DYD3_k127_2848869_14 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0000000000000000000000000001074 117.0
DYD3_k127_2848869_15 COG3245 Cytochrome c5 K02277 - 1.9.3.1 0.00000000000000000000000006321 113.0
DYD3_k127_2848869_16 Sulfurtransferase - - - 0.0000000000000000000000001242 112.0
DYD3_k127_2848869_17 Protein of unknown function (DUF3012) - - - 0.0000000000000585 72.0
DYD3_k127_2848869_18 response regulator K07712 - - 0.0000006066 51.0
DYD3_k127_2848869_19 - - - - 0.0000898 51.0
DYD3_k127_2848869_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 321.0
DYD3_k127_2848869_20 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.0004795 50.0
DYD3_k127_2848869_3 Sugar kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 311.0
DYD3_k127_2848869_4 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003723 290.0
DYD3_k127_2848869_5 Magnesium chelatase, subunit ChlI K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005703 270.0
DYD3_k127_2848869_6 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000003344 263.0
DYD3_k127_2848869_7 stress-induced mitochondrial fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002898 258.0
DYD3_k127_2848869_8 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005962 258.0
DYD3_k127_2848869_9 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000002637 233.0
DYD3_k127_2871043_1 Pyrrolo-quinoline quinone K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 312.0
DYD3_k127_2871043_2 - - - - 0.000000000000000000006658 105.0
DYD3_k127_2871043_3 - - - - 0.00001019 53.0
DYD3_k127_2890619_0 4-hydroxyphenylacetate 3-hydroxylase C terminal K00483 - 1.14.14.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004476 559.0
DYD3_k127_2890619_1 Major facilitator superfamily K08223 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 512.0
DYD3_k127_2890619_10 Protein of unknown function (DUF3450) - - - 0.000000000000000000000000000000000000001457 157.0
DYD3_k127_2890619_11 Biopolymer transport protein ExbD/TolR K03559 - - 0.000000000000000000000000000000001844 133.0
DYD3_k127_2890619_12 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000001742 134.0
DYD3_k127_2890619_13 Poly (ADP-ribose) polymerase K10798 GO:0001101,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019538,GO:0022616,GO:0033554,GO:0033993,GO:0034641,GO:0034645,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0097305,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1901700 2.4.2.30 0.000001297 57.0
DYD3_k127_2890619_2 MotA/TolQ/ExbB proton channel family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 406.0
DYD3_k127_2890619_3 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 375.0
DYD3_k127_2890619_4 MotA/TolQ/ExbB proton channel family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 381.0
DYD3_k127_2890619_5 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000002783 220.0
DYD3_k127_2890619_6 Protein of unknown function (DUF3450) - - - 0.00000000000000000000000000000000000000000000000000000008455 207.0
DYD3_k127_2890619_7 MotA/TolQ/ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000006222 192.0
DYD3_k127_2890619_8 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000000000000000000000001075 180.0
DYD3_k127_2890619_9 Protein of unknown function (DUF3450) - - - 0.0000000000000000000000000000000000000000000000003979 190.0
DYD3_k127_2893288_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 513.0
DYD3_k127_2893288_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009881 469.0
DYD3_k127_2893288_2 transport, permease protein K01992 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003204 402.0
DYD3_k127_2893288_3 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000000005386 145.0
DYD3_k127_2893288_4 phosphatase (DUF442) - - - 0.00000000000000000000000000000002896 134.0
DYD3_k127_2893288_5 - - - - 0.000000000000000000000000000004927 125.0
DYD3_k127_2893288_6 PFAM Excinuclease ABC C subunit domain protein K07461 - - 0.000000000000000000001403 97.0
DYD3_k127_2893288_7 - - - - 0.000000000000000001245 95.0
DYD3_k127_2893288_8 - - - - 0.00000000000006224 78.0
DYD3_k127_2893288_9 - - - - 0.0000009533 56.0
DYD3_k127_2909649_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 8.795e-295 920.0
DYD3_k127_2909649_1 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 1.345e-229 730.0
DYD3_k127_2909649_2 Transglutaminase/protease-like homologues K22452 - 2.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006525 450.0
DYD3_k127_2909649_3 associated with various cellular activities K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 368.0
DYD3_k127_2909649_4 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000322 259.0
DYD3_k127_2909649_5 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000008279 246.0
DYD3_k127_2909649_6 dihydroxy-acid dehydratase activity K01687 GO:0003674,GO:0003824,GO:0004160,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009507,GO:0009532,GO:0009536,GO:0009553,GO:0009555,GO:0009570,GO:0009628,GO:0009651,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0022622,GO:0032501,GO:0032502,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0050896,GO:0071704,GO:0099402,GO:1901564,GO:1901566,GO:1901576 4.2.1.9 0.000000000000000000000000000000000000000000000000000000001045 205.0
DYD3_k127_2909649_7 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.000000000000000000000000000000000000000000000001881 180.0
DYD3_k127_29318_0 Protein of unknown function (DUF1343) - - - 1.983e-205 645.0
DYD3_k127_29318_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 486.0
DYD3_k127_29318_2 COG0277 FAD FMN-containing dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003796 459.0
DYD3_k127_29318_3 - - - - 0.00000000000000000000000000009044 123.0
DYD3_k127_29318_5 - - - - 0.000000004244 64.0
DYD3_k127_2940920_0 TIGRFAM glycogen debranching enzyme - - - 1.083e-232 742.0
DYD3_k127_2940920_1 Sucrose-6F-phosphate phosphohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 595.0
DYD3_k127_2940920_10 - - - - 0.000000000007927 75.0
DYD3_k127_2940920_11 Domain of unknown function (DUF4398) - - - 0.00003361 53.0
DYD3_k127_2940920_12 YfaZ precursor - - - 0.000541 51.0
DYD3_k127_2940920_2 SMART alpha amylase, catalytic sub domain K01187 - 3.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 589.0
DYD3_k127_2940920_3 Phospholipase D. Active site motifs. K01115 - 3.1.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007132 487.0
DYD3_k127_2940920_4 - - - - 0.0000000000000000000000000000000000000000000000000000002385 203.0
DYD3_k127_2940920_5 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000007464 202.0
DYD3_k127_2940920_6 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000004857 179.0
DYD3_k127_2940920_7 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0000000000000000000000000009526 118.0
DYD3_k127_2940920_8 - - - - 0.00000000000000000000000001893 111.0
DYD3_k127_2940920_9 Protein of unknown function (DUF3618) - - - 0.0000000000000000000007349 105.0
DYD3_k127_2945704_0 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 4.987e-226 723.0
DYD3_k127_2945704_1 LysR substrate binding domain K04761 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001116 255.0
DYD3_k127_2945704_2 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - - - 0.000000000000000000000000000000000000000000000244 179.0
DYD3_k127_2945704_3 HemY protein - - - 0.0009756 53.0
DYD3_k127_2979407_0 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007933 467.0
DYD3_k127_2979407_1 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000003699 201.0
DYD3_k127_2979407_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000006402 91.0
DYD3_k127_2979407_3 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000002566 68.0
DYD3_k127_2997909_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 7.402e-280 893.0
DYD3_k127_2997909_1 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 6.669e-209 659.0
DYD3_k127_2997909_10 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000007352 56.0
DYD3_k127_2997909_11 - - - - 0.000003047 55.0
DYD3_k127_2997909_2 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005047 548.0
DYD3_k127_2997909_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000002982 267.0
DYD3_k127_2997909_4 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0033890,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000001919 243.0
DYD3_k127_2997909_5 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000006381 226.0
DYD3_k127_2997909_6 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 - 3.1.4.53 0.00000000000000000000000000000000000000000000000000000000000000008018 231.0
DYD3_k127_2997909_7 TraB family K09973 - - 0.0000000000000000000000000000000000000000000000002994 188.0
DYD3_k127_2997909_8 PFAM peptidase S16 lon domain protein K07157 - - 0.0000000000000000000000000000000000000000001531 165.0
DYD3_k127_2997909_9 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.00000000000000000000000002303 109.0
DYD3_k127_3005485_0 efflux transmembrane transporter activity - - - 1.16e-275 870.0
DYD3_k127_3005485_1 D-amino acid K00285 - 1.4.5.1 1.222e-226 707.0
DYD3_k127_3005485_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 524.0
DYD3_k127_3005485_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008638 456.0
DYD3_k127_3005485_4 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000002178 211.0
DYD3_k127_3005485_5 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000000001188 207.0
DYD3_k127_3005485_6 bis(5'-adenosyl)-triphosphatase activity K02503 - - 0.000000000000000000000000000000000000001462 153.0
DYD3_k127_3005485_8 Domain of Unknown Function (DUF1080) - - - 0.0002307 51.0
DYD3_k127_306137_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1465.0
DYD3_k127_306137_1 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 7.373e-237 769.0
DYD3_k127_306137_10 Domain of unknown function (DUF1820) - - - 0.00000000000000000000000000000000000000002371 155.0
DYD3_k127_306137_11 Thioredoxin-like - - - 0.000000000000000000000000000000000006185 143.0
DYD3_k127_306137_12 - - - - 0.000000000000000000000002274 107.0
DYD3_k127_306137_2 MacB-like periplasmic core domain - - - 3.253e-231 742.0
DYD3_k127_306137_3 Cation efflux family K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 369.0
DYD3_k127_306137_4 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 313.0
DYD3_k127_306137_5 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000291 260.0
DYD3_k127_306137_6 protein serine/threonine phosphatase activity K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000005562 202.0
DYD3_k127_306137_7 Cupin 2, conserved barrel - - - 0.00000000000000000000000000000000000000000000000000006879 189.0
DYD3_k127_306137_8 NUDIX domain - - - 0.000000000000000000000000000000000000000000000003895 177.0
DYD3_k127_306137_9 Type VI secretion K07169,K11894,K11913 - - 0.0000000000000000000000000000000000000000000000576 189.0
DYD3_k127_3092116_0 - - - - 7.668e-306 951.0
DYD3_k127_3092116_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC - - - 7.907e-267 845.0
DYD3_k127_3092116_2 Peptidase family M49 K01277 - 3.4.14.4 1.032e-240 771.0
DYD3_k127_3092116_3 Belongs to the alkaline phosphatase family K01077 GO:0000287,GO:0003674,GO:0003824,GO:0004035,GO:0004721,GO:0005488,GO:0005575,GO:0005623,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016491,GO:0016695,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0030288,GO:0030313,GO:0030613,GO:0031975,GO:0033748,GO:0036211,GO:0042578,GO:0042597,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:0140096,GO:1901564 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 349.0
DYD3_k127_3092116_4 abc transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 327.0
DYD3_k127_3092116_5 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000707 218.0
DYD3_k127_3117919_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 6.615e-225 700.0
DYD3_k127_3117919_1 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008744 359.0
DYD3_k127_3117919_2 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 300.0
DYD3_k127_3117919_3 COG1419 Flagellar GTP-binding protein K02404 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 299.0
DYD3_k127_3117919_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000501 269.0
DYD3_k127_3124314_0 Tripartite tricarboxylate transporter TctA family K07793 - - 4.73e-197 625.0
DYD3_k127_3124314_1 FAD dependent oxidoreductase K13796 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 593.0
DYD3_k127_3124314_2 protein conserved in bacteria K07795 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 316.0
DYD3_k127_3124314_3 response regulator K15012 - - 0.0000000000000000000000000000000000000000000000004826 184.0
DYD3_k127_3124314_4 TIGRFAM CitB domain protein K13795 - - 0.000000000000000000000000000000000000000000000004029 178.0
DYD3_k127_3124314_5 His Kinase A (phosphoacceptor) domain K15011 - 2.7.13.3 0.000000001128 61.0
DYD3_k127_3145725_0 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 5.106e-226 728.0
DYD3_k127_3145725_1 DoxX-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 441.0
DYD3_k127_3145725_2 COG1012 NAD-dependent aldehyde dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 441.0
DYD3_k127_3145725_3 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003498 366.0
DYD3_k127_3145725_4 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003525 270.0
DYD3_k127_3145725_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000007184 229.0
DYD3_k127_3145725_6 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000009583 196.0
DYD3_k127_3145725_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000001481 212.0
DYD3_k127_3145725_8 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000002533 199.0
DYD3_k127_3161771_0 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007164 541.0
DYD3_k127_3161771_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 477.0
DYD3_k127_3161771_10 Type IV Pilus-assembly protein W K02672 - - 0.00000000000000000000000000006553 128.0
DYD3_k127_3161771_11 - - - - 0.000000000000000000000001873 108.0
DYD3_k127_3161771_13 COG4968 Tfp pilus assembly protein PilE K02655 - - 0.0000000000000001416 85.0
DYD3_k127_3161771_14 TIGRFAM Pilus modification type IV, PilV K02671 - - 0.000000000000001098 89.0
DYD3_k127_3161771_15 PRC-barrel domain - - - 0.000000000000007626 78.0
DYD3_k127_3161771_16 Type II transport protein GspH K08084 - - 0.0000000000001665 77.0
DYD3_k127_3161771_18 - - - - 0.00000000001083 76.0
DYD3_k127_3161771_19 - - - - 0.00000000001906 76.0
DYD3_k127_3161771_2 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 432.0
DYD3_k127_3161771_20 COG4970 Tfp pilus assembly protein FimT K08084,K08085 - - 0.000000001759 66.0
DYD3_k127_3161771_21 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.000009081 50.0
DYD3_k127_3161771_22 Pilus assembly protein PilX K02673 - - 0.00007869 51.0
DYD3_k127_3161771_23 PRC-barrel domain - - - 0.0001851 48.0
DYD3_k127_3161771_3 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001703 284.0
DYD3_k127_3161771_4 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002522 252.0
DYD3_k127_3161771_5 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000131 232.0
DYD3_k127_3161771_6 - - - - 0.000000000000000000000000000000000000000000000000000000001032 208.0
DYD3_k127_3161771_7 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000001781 168.0
DYD3_k127_3161771_8 Ferric uptake regulator family K09826 - - 0.00000000000000000000000000000000000001435 148.0
DYD3_k127_3161771_9 thiolester hydrolase activity - - - 0.00000000000000000000000000000000191 135.0
DYD3_k127_3168753_0 ABC transporter K15738 - - 5.145e-228 726.0
DYD3_k127_3168753_1 Cytochrome c-type biogenesis protein CcmF K02198 - - 4.733e-225 717.0
DYD3_k127_3168753_10 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 308.0
DYD3_k127_3168753_11 PFAM Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003308 274.0
DYD3_k127_3168753_12 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001069 273.0
DYD3_k127_3168753_13 Amino-transferase class IV K02619 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008696,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0019842,GO:0030170,GO:0034641,GO:0036094,GO:0042558,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070279,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564 4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000006399 257.0
DYD3_k127_3168753_14 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000003511 218.0
DYD3_k127_3168753_15 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031224,GO:0031226,GO:0032991,GO:0042623,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000003109 198.0
DYD3_k127_3168753_16 peptidase M48, Ste24p - - - 0.00000000000000000000000000000000000000000000000001704 191.0
DYD3_k127_3168753_17 Pilus assembly protein PilZ K02676 - - 0.000000000000000000000000000000000000000000000003173 176.0
DYD3_k127_3168753_18 COG0526 Thiol-disulfide isomerase and thioredoxins K02199 GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015036,GO:0016020,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0017004,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0065003,GO:0071840,GO:0071944,GO:0098552,GO:0098567,GO:0140096 - 0.000000000000000000000000000000000000000000000553 183.0
DYD3_k127_3168753_19 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015886,GO:0016020,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0051179,GO:0051181,GO:0051234,GO:0065003,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0097159,GO:0098552,GO:0098567,GO:1901363,GO:1901564,GO:1901678 - 0.00000000000000000000000000000000000000009454 155.0
DYD3_k127_3168753_2 PFAM 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 628.0
DYD3_k127_3168753_20 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000001188 157.0
DYD3_k127_3168753_21 the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA K02341 - 2.7.7.7 0.000000000000000000000000000000000000005326 165.0
DYD3_k127_3168753_22 Cytochrome C biogenesis K02200 - - 0.0000000000000000000000000000381 131.0
DYD3_k127_3168753_23 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0050896,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.0000000000000000000000000004645 113.0
DYD3_k127_3168753_24 subunit of a heme lyase K02200 - - 0.0000000000000000000000000131 122.0
DYD3_k127_3168753_25 MTH538 TIR-like domain (DUF1863) - - - 0.0000000000002092 78.0
DYD3_k127_3168753_26 (FHA) domain - - - 0.000000001711 70.0
DYD3_k127_3168753_27 Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors K12973 - 2.3.1.251 0.00002211 54.0
DYD3_k127_3168753_28 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00008138 53.0
DYD3_k127_3168753_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 581.0
DYD3_k127_3168753_4 Acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 476.0
DYD3_k127_3168753_5 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 446.0
DYD3_k127_3168753_6 class I DNA-(apurinic or apyrimidinic site) endonuclease activity K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004933 369.0
DYD3_k127_3168753_7 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 353.0
DYD3_k127_3168753_8 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 311.0
DYD3_k127_3168753_9 PFAM Glycerophosphoryl diester phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 308.0
DYD3_k127_3191661_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000857 351.0
DYD3_k127_3191661_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000001924 208.0
DYD3_k127_3191661_2 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000004938 132.0
DYD3_k127_3191661_3 - - - - 0.00002199 52.0
DYD3_k127_3197356_0 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007659 505.0
DYD3_k127_3197356_1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 GO:0000103,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006790,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008441,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 302.0
DYD3_k127_3197356_2 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001234 282.0
DYD3_k127_3197356_3 Haloacid dehalogenase-like hydrolase K20881 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0008477,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016798,GO:0016799,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050483,GO:0050484 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000001363 236.0
DYD3_k127_3197356_4 COG3202 ATP ADP translocase K03301 - - 0.00000000000000000000000000000000000000000000000000000000000001115 225.0
DYD3_k127_3197356_5 small protein containing a coiled-coil domain - - - 0.00000000000001304 79.0
DYD3_k127_3197356_6 - - - - 0.0006191 46.0
DYD3_k127_3200610_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007759 401.0
DYD3_k127_3200610_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 315.0
DYD3_k127_3200610_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 306.0
DYD3_k127_3200610_3 Protein of unknown function (DUF2959) - - - 0.0000000000000000000000000000000000000000000000000000000000000001117 229.0
DYD3_k127_3200610_4 PFAM Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000002129 184.0
DYD3_k127_3200610_5 Predicted membrane protein (DUF2214) K08983 - - 0.000000000000000000000000000000009822 135.0
DYD3_k127_3200610_6 Yip1 domain - - - 0.000000000002669 76.0
DYD3_k127_3200610_7 May be involved in recombination K03554 GO:0000018,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009295,GO:0019219,GO:0019222,GO:0031323,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363 - 0.0000000000107 72.0
DYD3_k127_3220318_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1109.0
DYD3_k127_3220318_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 2.11e-202 636.0
DYD3_k127_3220318_10 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 328.0
DYD3_k127_3220318_11 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004178 281.0
DYD3_k127_3220318_12 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.00000000000000000000000000000000000000000000002641 173.0
DYD3_k127_3220318_13 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000004819 156.0
DYD3_k127_3220318_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 585.0
DYD3_k127_3220318_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 522.0
DYD3_k127_3220318_4 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585 415.0
DYD3_k127_3220318_5 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 405.0
DYD3_k127_3220318_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 398.0
DYD3_k127_3220318_7 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 383.0
DYD3_k127_3220318_8 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 381.0
DYD3_k127_3220318_9 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002402 333.0
DYD3_k127_324361_0 PFAM short-chain dehydrogenase reductase SDR - - - 6.93e-223 742.0
DYD3_k127_324361_1 TIGRFAM Amino acid adenylation - - - 9.098e-204 685.0
DYD3_k127_324361_10 UDP-glucoronosyl and UDP-glucosyl transferase K14596 - 2.4.1.276 0.000000000000000000000000000000007472 146.0
DYD3_k127_324361_11 Prolyl 4-hydroxylase alpha subunit homologues. K07336 GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0033554,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771 - 0.0000000000000000000000000000005501 133.0
DYD3_k127_324361_12 Phosphopantetheine attachment site - - - 0.000000000000000000101 92.0
DYD3_k127_324361_13 MbtH-like protein K05375 - - 0.0000000000000001013 83.0
DYD3_k127_324361_14 PFAM AMP-dependent synthetase and ligase, condensation domain protein, acyl carrier protein familyprotein - - - 0.00000008369 57.0
DYD3_k127_324361_2 Carbamoyltransferase K00612,K16035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 610.0
DYD3_k127_324361_3 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007651 584.0
DYD3_k127_324361_4 Male sterility protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 451.0
DYD3_k127_324361_5 Glucose-methanol-choline (GMC) oxidoreductase NAD binding site - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 398.0
DYD3_k127_324361_6 Aspartyl asparaginyl beta-hydroxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003839 275.0
DYD3_k127_324361_7 Cyclic peptide transporter K06160 - - 0.0000000000000000000000000000000000000000000000000000000000000000002449 250.0
DYD3_k127_324361_8 non-ribosomal peptide synthetase - - - 0.000000000000000000000000000000000000000000000002201 191.0
DYD3_k127_324361_9 chorismate binding enzyme K04781 - 4.2.99.21,5.4.4.2 0.0000000000000000000000000000000000000006157 158.0
DYD3_k127_3250143_0 MacB-like periplasmic core domain - - - 3.209e-234 751.0
DYD3_k127_3250143_1 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 596.0
DYD3_k127_3250143_2 HlyD family secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 301.0
DYD3_k127_3296056_0 COG0493 NADPH-dependent glutamate synthase beta chain and K00266 - 1.4.1.13,1.4.1.14 3.831e-243 759.0
DYD3_k127_3296056_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 388.0
DYD3_k127_3296056_2 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.00000000000000000000000000000000000000000000008899 171.0
DYD3_k127_3296056_3 SMART Water Stress and Hypersensitive response - - - 0.000001692 56.0
DYD3_k127_3311721_0 protease with the C-terminal PDZ domain - - - 1.644e-242 767.0
DYD3_k127_3311721_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 468.0
DYD3_k127_3311721_10 Diguanylate cyclase, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000005636 194.0
DYD3_k127_3311721_11 Dioxygenase - - - 0.0000000000000000000000000000000000000000000000004429 184.0
DYD3_k127_3311721_12 Methyltransferase - - - 0.0000000000000000000000000000000000000000002192 171.0
DYD3_k127_3311721_13 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000001638 142.0
DYD3_k127_3311721_14 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000009488 128.0
DYD3_k127_3311721_15 - - - - 0.0000000003343 72.0
DYD3_k127_3311721_2 Membrane-bound serine protease (ClpP class) K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007905 468.0
DYD3_k127_3311721_3 PFAM SPFH domain Band 7 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 378.0
DYD3_k127_3311721_4 Retinal pigment epithelial membrane protein K11159 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 368.0
DYD3_k127_3311721_5 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000009645 237.0
DYD3_k127_3311721_6 Uncharacterized protein family, UPF0114 - - - 0.00000000000000000000000000000000000000000000000000000000000006324 220.0
DYD3_k127_3311721_9 histone H4-K16 acetylation K07020 - - 0.00000000000000000000000000000000000000000000000000004583 194.0
DYD3_k127_3326040_0 FtsX-like permease family K02004 - - 2.374e-253 799.0
DYD3_k127_3326040_1 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004616 450.0
DYD3_k127_3326040_2 HlyD family secretion protein K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 415.0
DYD3_k127_3326040_3 AMP-binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001495 273.0
DYD3_k127_3326040_4 Thermostable hemolysin - - - 0.000000000000000000000000000000000000000001938 164.0
DYD3_k127_3326040_5 methyltransferase activity - - - 0.00000000000000000000000003182 122.0
DYD3_k127_3326040_6 Ca2 -binding protein (EF-Hand superfamily - - - 0.00003364 50.0
DYD3_k127_3327702_0 PQQ enzyme repeat K00117 - 1.1.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 495.0
DYD3_k127_3327702_1 PFAM amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 454.0
DYD3_k127_3327702_10 - K01992 - - 0.000000002409 67.0
DYD3_k127_3327702_11 CAAX protease self-immunity K07052 - - 0.0000005013 61.0
DYD3_k127_3327702_2 carboxylic ester hydrolase activity K03929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003576 396.0
DYD3_k127_3327702_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004523 265.0
DYD3_k127_3327702_4 Cell wall-active antibiotics response 4TMS YvqF - - - 0.00000000000000000000000000000000000000000000000000000000009942 213.0
DYD3_k127_3327702_5 PFAM Fatty acid hydroxylase - - - 0.0000000000000000000000000000000000000000000000000001861 196.0
DYD3_k127_3327702_6 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000000000000000002194 188.0
DYD3_k127_3327702_7 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000009598 160.0
DYD3_k127_3327702_8 Transcriptional regulator K07978,K07979 - - 0.00000000000000000000000000000004195 129.0
DYD3_k127_3327702_9 - - - - 0.000000000000000000009095 97.0
DYD3_k127_3341276_0 COG4206 Outer membrane cobalamin receptor protein K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 516.0
DYD3_k127_3341276_1 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 346.0
DYD3_k127_3341276_2 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003422 241.0
DYD3_k127_3341276_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000002874 161.0
DYD3_k127_3341276_4 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000003383 141.0
DYD3_k127_3341276_5 - - - - 0.00000000000000000000002059 108.0
DYD3_k127_3341276_7 - - - - 0.00000000004079 67.0
DYD3_k127_3341934_0 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.0 1342.0
DYD3_k127_3341934_1 xanthine dehydrogenase activity - - - 0.0 1078.0
DYD3_k127_3341934_10 TIGRFAM type IV pilus modification protein PilV K02671 - - 0.000000000000000000000000000000001209 143.0
DYD3_k127_3341934_11 HWE histidine kinase - - - 0.00000000000000000000000000000003979 146.0
DYD3_k127_3341934_12 Type II transport protein GspH K08084 - - 0.0000000000000000000000000000004334 130.0
DYD3_k127_3341934_13 COG4968 Tfp pilus assembly protein PilE K02655 - - 0.000000000000000000000000000002233 126.0
DYD3_k127_3341934_2 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532 469.0
DYD3_k127_3341934_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 449.0
DYD3_k127_3341934_4 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000006023 248.0
DYD3_k127_3341934_5 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000003206 219.0
DYD3_k127_3341934_6 Type IV Pilus-assembly protein W K02672 - - 0.0000000000000000000000000000000000000000000000000000284 202.0
DYD3_k127_3341934_7 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000009673 196.0
DYD3_k127_3341934_8 Type IV pilus assembly protein PilX C-term K02673 - - 0.000000000000000000000000000000000001017 145.0
DYD3_k127_3341934_9 Dehydrogenase K17760 - 1.1.9.1 0.0000000000000000000000000000000006345 136.0
DYD3_k127_3351834_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 3.084e-269 845.0
DYD3_k127_3351834_1 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 503.0
DYD3_k127_3351834_10 Role in flagellar biosynthesis K02420 - - 0.000000000000000000000002057 106.0
DYD3_k127_3351834_11 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000009964 81.0
DYD3_k127_3351834_12 Flagellar hook-length control protein K02414 - - 0.00000000001652 76.0
DYD3_k127_3351834_13 - - - - 0.0000000001729 68.0
DYD3_k127_3351834_14 COG3190 Flagellar biogenesis protein K02418 - - 0.000000001727 67.0
DYD3_k127_3351834_15 Flagellar FliJ protein - - - 0.000001211 56.0
DYD3_k127_3351834_2 ATPase FliI YscN family K02412 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 492.0
DYD3_k127_3351834_3 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002071 321.0
DYD3_k127_3351834_4 Belongs to the ParA family K04562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 305.0
DYD3_k127_3351834_5 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005327 285.0
DYD3_k127_3351834_6 flagellar K02404 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008863 274.0
DYD3_k127_3351834_7 FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02416 - - 0.000000000000000000000000000000000000000000000000000000000006641 219.0
DYD3_k127_3351834_8 Role in flagellar biosynthesis K02421 - - 0.0000000000000000000000000000000000000000000000000000000001914 216.0
DYD3_k127_3351834_9 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.0000000000000000000000000000000001144 135.0
DYD3_k127_3358240_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008902 543.0
DYD3_k127_3358240_1 Belongs to the beta-ketoacyl-ACP synthases family K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 526.0
DYD3_k127_3358240_10 4'-phosphopantetheinyl transferase superfamily K06133 - - 0.000000000001525 80.0
DYD3_k127_3358240_2 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005318 383.0
DYD3_k127_3358240_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009168 327.0
DYD3_k127_3358240_4 Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - 0.000000000000000000000000000000000000000000000000000002562 196.0
DYD3_k127_3358240_5 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000003744 180.0
DYD3_k127_3358240_6 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.000000000000000000000000000000000000000000004011 173.0
DYD3_k127_3358240_7 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000008211 164.0
DYD3_k127_3358240_8 Dehydratase - - - 0.00000000000000000000000000222 128.0
DYD3_k127_3358240_9 AMP-binding enzyme - - - 0.000000000000000000002239 106.0
DYD3_k127_3368283_0 Spermine/spermidine synthase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 625.0
DYD3_k127_3368283_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 434.0
DYD3_k127_3368283_10 - - - - 0.00000008725 61.0
DYD3_k127_3368283_11 - - - - 0.00002394 56.0
DYD3_k127_3368283_12 Putative restriction endonuclease - - - 0.0000292 51.0
DYD3_k127_3368283_2 GTP-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 400.0
DYD3_k127_3368283_3 FAD linked oxidase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 360.0
DYD3_k127_3368283_4 polyphosphate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007546 323.0
DYD3_k127_3368283_5 Protein of unknown function (DUF2868) - - - 0.0000000000000000000000000000000000000000000000000000000008263 220.0
DYD3_k127_3368283_6 Zn-dependent - - - 0.0000000000000000000000000000000000000000000008581 180.0
DYD3_k127_3368283_7 NHL repeat - - - 0.0000000000000000000000000000000000000002816 167.0
DYD3_k127_3368283_8 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000301 108.0
DYD3_k127_3368283_9 - - - - 0.00000000004797 74.0
DYD3_k127_3369858_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 338.0
DYD3_k127_3369858_1 Trypsin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006683 252.0
DYD3_k127_3369858_2 Histidine kinase - - - 0.0000000000000000000000000000000001327 147.0
DYD3_k127_3369858_3 - - - - 0.00000009651 59.0
DYD3_k127_3390474_0 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007189 609.0
DYD3_k127_3390474_1 - - - - 0.00000000000000000000000000000000000000000005086 173.0
DYD3_k127_3390474_2 - - - - 0.0000000000000000000000000000000000005125 144.0
DYD3_k127_3390474_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000001215 142.0
DYD3_k127_3390474_4 nucleotidyltransferase activity K07075,K07076 - - 0.00000000000000000000000019 108.0
DYD3_k127_3390474_5 Putative adhesin - - - 0.000000000000000002763 93.0
DYD3_k127_3390474_6 ankyrin repeat K06867 - - 0.000009003 53.0
DYD3_k127_3397126_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 463.0
DYD3_k127_3397126_1 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003863 427.0
DYD3_k127_3397126_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007997 402.0
DYD3_k127_3397126_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 402.0
DYD3_k127_3397126_4 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 384.0
DYD3_k127_3397126_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005759 284.0
DYD3_k127_3397126_6 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000001859 174.0
DYD3_k127_3404735_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 9.608e-279 877.0
DYD3_k127_3404735_1 Belongs to the GppA Ppx family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 471.0
DYD3_k127_3404735_10 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5 0.00000000000000000001072 94.0
DYD3_k127_3404735_11 - - - - 0.0000002077 52.0
DYD3_k127_3404735_2 Prephenate dehydrogenase chorismate mutase K00210 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 417.0
DYD3_k127_3404735_3 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 371.0
DYD3_k127_3404735_4 Serine hydrolase involved in the detoxification of formaldehyde K01070,K09795 - 3.1.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008936 344.0
DYD3_k127_3404735_5 Protein of unknown function, DUF484 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005417 280.0
DYD3_k127_3404735_6 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000447 222.0
DYD3_k127_3404735_7 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000002579 186.0
DYD3_k127_3404735_8 cell shape determination - - - 0.00000000000000000000000000000005808 130.0
DYD3_k127_3404735_9 - - - - 0.00000000000000000000000008807 115.0
DYD3_k127_3438347_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 4.611e-220 691.0
DYD3_k127_3438347_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 2.749e-202 641.0
DYD3_k127_3438347_10 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006738 250.0
DYD3_k127_3438347_11 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000001683 229.0
DYD3_k127_3438347_12 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000001096 231.0
DYD3_k127_3438347_13 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000000000000000001713 207.0
DYD3_k127_3438347_14 DinB family - - - 0.000000000000000000000000000000000000000000000000002173 206.0
DYD3_k127_3438347_15 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000001584 164.0
DYD3_k127_3438347_16 Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins K03571 - - 0.00000000000000000000000000001948 133.0
DYD3_k127_3438347_17 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000001558 104.0
DYD3_k127_3438347_18 Domain of unknown function (DUF4252) - - - 0.00000000000009921 79.0
DYD3_k127_3438347_19 Belongs to the UPF0250 family K09158 - - 0.000000000004469 78.0
DYD3_k127_3438347_2 TIGRFAM Cell shape determining protein MreB Mrl K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 566.0
DYD3_k127_3438347_3 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 588.0
DYD3_k127_3438347_4 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009714 544.0
DYD3_k127_3438347_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 456.0
DYD3_k127_3438347_6 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 378.0
DYD3_k127_3438347_7 Belongs to the phospholipase D family. Cardiolipin synthase subfamily K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 325.0
DYD3_k127_3438347_8 cell wall glycoprotein biosynthetic process K00344,K01809,K01840,K03431,K04035,K15778,K16881 GO:0000032,GO:0000271,GO:0003674,GO:0003824,GO:0004476,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005996,GO:0006013,GO:0006056,GO:0006057,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009242,GO:0009298,GO:0009987,GO:0016051,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019309,GO:0019318,GO:0019320,GO:0019438,GO:0019538,GO:0019673,GO:0031506,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042546,GO:0043170,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046377,GO:0046483,GO:0055086,GO:0070085,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 1.14.13.81,1.6.5.5,2.7.7.13,5.3.1.8,5.4.2.10,5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 314.0
DYD3_k127_3438347_9 COG2951 Membrane-bound lytic murein transglycosylase B K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 306.0
DYD3_k127_3507353_0 receptor - - - 2.502e-239 765.0
DYD3_k127_3507353_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 604.0
DYD3_k127_3507353_10 COG1428 Deoxynucleoside kinases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007253 268.0
DYD3_k127_3507353_11 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000371 254.0
DYD3_k127_3507353_12 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000472 135.0
DYD3_k127_3507353_13 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000000002052 123.0
DYD3_k127_3507353_14 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009055,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0022900,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.00000000000000000000357 98.0
DYD3_k127_3507353_15 GCN5-related N-acetyl-transferase K06975 - - 0.000000000000000005753 92.0
DYD3_k127_3507353_16 - - - - 0.00000000006584 70.0
DYD3_k127_3507353_17 - - - - 0.000003667 57.0
DYD3_k127_3507353_18 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0003638 46.0
DYD3_k127_3507353_2 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000948 470.0
DYD3_k127_3507353_3 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 451.0
DYD3_k127_3507353_4 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 452.0
DYD3_k127_3507353_5 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 379.0
DYD3_k127_3507353_6 N-acetylmuramoyl-L-alanine amidase K01448 GO:0000003,GO:0000910,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0008745,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0019954,GO:0022402,GO:0022414,GO:0030288,GO:0030313,GO:0031975,GO:0032505,GO:0042597,GO:0043093,GO:0044464,GO:0051301,GO:0061783 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005436 374.0
DYD3_k127_3507353_7 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 328.0
DYD3_k127_3507353_8 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000095 317.0
DYD3_k127_3507353_9 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001705 293.0
DYD3_k127_3522978_0 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 551.0
DYD3_k127_3522978_1 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000005335 221.0
DYD3_k127_3522978_2 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000001449 139.0
DYD3_k127_3534864_0 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006784 496.0
DYD3_k127_3534864_1 - - - - 0.00000000000000000000000000000000000000634 156.0
DYD3_k127_3534864_2 2OG-Fe(II) oxygenase superfamily - - - 0.0000000000000000000007993 103.0
DYD3_k127_3534864_3 HAD-hyrolase-like K07025 - - 0.00000000000000001178 86.0
DYD3_k127_3540667_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1493.0
DYD3_k127_3540667_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 616.0
DYD3_k127_3540667_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 336.0
DYD3_k127_3540667_3 Protein of unknown function (DUF1272) K09984 - - 0.000000000000000000000000000002217 128.0
DYD3_k127_3540667_4 Uncharacterized conserved protein (DUF2267) - - - 0.00000000000000000000000000002473 128.0
DYD3_k127_3546169_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 568.0
DYD3_k127_3546169_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000613 534.0
DYD3_k127_3546169_10 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000003877 197.0
DYD3_k127_3546169_11 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000000000000000007141 188.0
DYD3_k127_3546169_12 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000002444 185.0
DYD3_k127_3546169_13 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000009561 165.0
DYD3_k127_3546169_14 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000002119 168.0
DYD3_k127_3546169_15 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048027,GO:0070181,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000002165 136.0
DYD3_k127_3546169_16 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000008296 120.0
DYD3_k127_3546169_17 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.00000008257 58.0
DYD3_k127_3546169_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007694 469.0
DYD3_k127_3546169_3 CBS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 437.0
DYD3_k127_3546169_4 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002134 327.0
DYD3_k127_3546169_5 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 304.0
DYD3_k127_3546169_6 phosphatase K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 296.0
DYD3_k127_3546169_7 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006279 284.0
DYD3_k127_3546169_8 TRAP transporter T-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000008419 238.0
DYD3_k127_3546169_9 (FHA) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001014 230.0
DYD3_k127_3580788_0 PQQ-like domain K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005741 358.0
DYD3_k127_3580788_1 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000000001104 194.0
DYD3_k127_3580788_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000005819 131.0
DYD3_k127_3580788_3 Belongs to the bacterial histone-like protein family - - - 0.0000000000000000000008026 108.0
DYD3_k127_3604378_0 Belongs to the xylose isomerase family K01805 GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 5.3.1.5 5.042e-243 755.0
DYD3_k127_3604378_1 Sugar phosphate isomerases epimerases - - - 1.151e-205 653.0
DYD3_k127_3604378_2 oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008994 606.0
DYD3_k127_3604378_3 Xylulose kinase K00854 GO:0003674,GO:0003824,GO:0004856,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046365,GO:0046835,GO:0071704,GO:1901575 2.7.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 358.0
DYD3_k127_3604378_4 Ankyrin repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 363.0
DYD3_k127_3629902_0 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 3.107e-258 803.0
DYD3_k127_3629902_1 Catalytic LigB subunit of aromatic ring-opening dioxygenase K04101 - 1.13.11.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 432.0
DYD3_k127_3629902_10 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01907 - 6.2.1.16 0.00000000000000000000000000000000805 128.0
DYD3_k127_3629902_11 Protein of unknown function (DUF3365) - - - 0.000000000000000000000000000005049 134.0
DYD3_k127_3629902_2 Reduces the stability of FtsZ polymers in the presence of ATP K06916 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 400.0
DYD3_k127_3629902_3 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006332 338.0
DYD3_k127_3629902_4 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009528 315.0
DYD3_k127_3629902_5 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 304.0
DYD3_k127_3629902_6 Predicted integral membrane protein (DUF2189) - - - 0.00000000000000000000000000000000000000000000000000000000000000025 231.0
DYD3_k127_3629902_7 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000001157 191.0
DYD3_k127_3629902_8 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000000001595 180.0
DYD3_k127_3629902_9 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.00000000000000000000000000000000000000001522 160.0
DYD3_k127_363587_0 CHASE2 K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005421 400.0
DYD3_k127_363587_1 CHAT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 397.0
DYD3_k127_363587_2 hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 357.0
DYD3_k127_363587_3 haemagglutination activity domain - - - 0.0000000000000000000000000000000000000000000002635 184.0
DYD3_k127_363587_4 - - - - 0.0000000001636 71.0
DYD3_k127_364267_0 UPF0210 protein K09157 - - 3.69e-219 687.0
DYD3_k127_364267_1 efflux transmembrane transporter activity - - - 5.549e-212 685.0
DYD3_k127_364267_2 PFAM UBA THIF-type NAD FAD binding K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000001065 258.0
DYD3_k127_364267_3 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000001556 244.0
DYD3_k127_364267_4 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000001417 211.0
DYD3_k127_364267_5 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.000000000000000000000000000000000000000000000000007681 191.0
DYD3_k127_364267_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000005831 170.0
DYD3_k127_364267_7 CAAX protease self-immunity K07052 - - 0.00001617 55.0
DYD3_k127_3686117_0 Flavin containing amine oxidoreductase - - - 3.174e-212 672.0
DYD3_k127_3686117_1 DNA topological change K03168 - 5.99.1.2 1.044e-205 667.0
DYD3_k127_3686117_2 Prokaryotic cytochrome b561 K12262 - - 0.0000000000000000000000000000002171 132.0
DYD3_k127_3686117_3 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000926 134.0
DYD3_k127_3686117_5 - - - - 0.000008002 56.0
DYD3_k127_3717681_0 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 433.0
DYD3_k127_3717681_1 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 383.0
DYD3_k127_3717681_2 Cysteine desulfurase 2 K11717 GO:0001887,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009000,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010269,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0018282,GO:0018283,GO:0019538,GO:0022607,GO:0031071,GO:0031163,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071704,GO:0071840,GO:1901564 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 312.0
DYD3_k127_3717681_3 DSBA oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000149 254.0
DYD3_k127_3717681_4 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000001755 183.0
DYD3_k127_3717681_5 PQQ-like domain K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000002238 172.0
DYD3_k127_3717681_6 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000002595 143.0
DYD3_k127_3717681_7 Peptidase family S51 - - - 0.000000002275 67.0
DYD3_k127_3717681_8 Carboxymuconolactone decarboxylase family - - - 0.000001204 58.0
DYD3_k127_3718140_0 Esterase-like activity of phytase - - - 8.462e-288 905.0
DYD3_k127_3718140_1 Aminotransferase class-III K01845 - 5.4.3.8 8.37e-230 724.0
DYD3_k127_3718140_10 - - - - 0.0000000000000000000000000000000000000000000000000000000002431 214.0
DYD3_k127_3718140_11 Methyltransferase domain - - - 0.00000000000000000000000000000000003412 147.0
DYD3_k127_3718140_12 Transposase zinc-binding domain - - - 0.000000000000000000000000000008777 125.0
DYD3_k127_3718140_13 Protein of unknown function (DUF3667) - - - 0.00000000000000000000000001877 119.0
DYD3_k127_3718140_14 Protein of unknown function (DUF3667) - - - 0.00000000000000000001548 102.0
DYD3_k127_3718140_15 Putative transposase - - - 0.00000000000000000195 86.0
DYD3_k127_3718140_16 Protein of unknown function (DUF3667) - - - 0.000000001543 68.0
DYD3_k127_3718140_17 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000003516 55.0
DYD3_k127_3718140_18 glycosyl transferase group 1 - - - 0.00001327 53.0
DYD3_k127_3718140_2 Pyruvate kinase K00873 - 2.7.1.40 6.503e-228 722.0
DYD3_k127_3718140_4 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 589.0
DYD3_k127_3718140_5 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 366.0
DYD3_k127_3718140_6 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 329.0
DYD3_k127_3718140_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 286.0
DYD3_k127_3718140_8 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002858 278.0
DYD3_k127_3718140_9 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000003016 243.0
DYD3_k127_3721389_0 Bacterial extracellular solute-binding protein K02048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 442.0
DYD3_k127_3721389_1 sulfate ABC transporter K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 360.0
DYD3_k127_3721389_2 sulfate ABC transporter, inner membrane subunit CysT K02046,K15496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 345.0
DYD3_k127_3721389_3 hydrolase of the metallo-beta-lactamase superfamily K12574 - - 0.000000000000000000000000000000000000000000000000000000000000000000001257 244.0
DYD3_k127_3721389_4 histidine kinase HAMP region domain protein - - - 0.00000000000000000000235 106.0
DYD3_k127_3727824_0 XFP C-terminal domain K01621 - 4.1.2.22,4.1.2.9 0.0 1188.0
DYD3_k127_3727824_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 395.0
DYD3_k127_3727824_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 343.0
DYD3_k127_3727824_3 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008212 324.0
DYD3_k127_3727824_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008039 291.0
DYD3_k127_3727824_5 ABC-2 family transporter protein - - - 0.0000000004012 70.0
DYD3_k127_3727824_6 PFAM Prolyl oligopeptidase family - - - 0.00004021 52.0
DYD3_k127_3727824_7 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0007745 42.0
DYD3_k127_3749758_0 cytochrome C peroxidase - - - 3.301e-248 782.0
DYD3_k127_3749758_1 regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 613.0
DYD3_k127_3749758_2 Peptidase dimerisation domain K13049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 496.0
DYD3_k127_3749758_3 cytochrome C peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 354.0
DYD3_k127_3749758_4 Helix-turn-helix domain - - - 0.0000000085 65.0
DYD3_k127_3803160_0 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 2.416e-224 712.0
DYD3_k127_3803160_1 Aldehyde dehydrogenase family K21802 - 1.2.1.67 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 618.0
DYD3_k127_3803160_2 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 416.0
DYD3_k127_3803160_3 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 374.0
DYD3_k127_3803160_4 Phospholipase D Transphosphatidylase K06132 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 313.0
DYD3_k127_3803160_5 Major Facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000006634 190.0
DYD3_k127_3803160_6 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000006442 185.0
DYD3_k127_3803160_7 PFAM ferredoxin K04755 - - 0.000000000000000000000000000000002061 132.0
DYD3_k127_3815651_0 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 368.0
DYD3_k127_3815651_1 Asp Glu hydantoin racemase K01799,K06033 - 4.1.1.76,5.2.1.1 0.000000000000000000000000000000000000000000000000000000000000001601 229.0
DYD3_k127_3815651_2 PFAM alpha beta hydrolase fold K01561 - 3.8.1.3 0.000000000000000000000000000000000000000000000000000000001621 207.0
DYD3_k127_3815651_3 Sortilin, neurotensin receptor 3, - - - 0.0000000000000000059 94.0
DYD3_k127_3815651_4 enzyme of the cupin superfamily - - - 0.00000000000005981 78.0
DYD3_k127_3815651_5 Sigma-70 region 2 K03088 - - 0.0000000000002827 76.0
DYD3_k127_3829951_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 467.0
DYD3_k127_3829951_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 307.0
DYD3_k127_3829951_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000001478 246.0
DYD3_k127_3829951_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000000000000000000002711 205.0
DYD3_k127_3829951_4 riboflavin synthase, alpha K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000001029 205.0
DYD3_k127_3829951_5 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K01498,K11752 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006725,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008703,GO:0008835,GO:0009058,GO:0009110,GO:0009231,GO:0009451,GO:0009987,GO:0016070,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0034641,GO:0036094,GO:0042364,GO:0042726,GO:0042727,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000001299 160.0
DYD3_k127_3829951_6 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000002028 141.0
DYD3_k127_3829951_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000002334 126.0
DYD3_k127_3844870_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000375 475.0
DYD3_k127_3844870_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 443.0
DYD3_k127_3844870_2 PFAM lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 439.0
DYD3_k127_3844870_3 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 321.0
DYD3_k127_3844870_5 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000001962 104.0
DYD3_k127_3844932_0 PQQ-like domain K00117 - 1.1.5.2 9.504e-225 714.0
DYD3_k127_3844932_1 SMP-30/Gluconolaconase/LRE-like region K01053,K14274 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 497.0
DYD3_k127_3844932_2 Cobalamin-independent synthase, Catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 429.0
DYD3_k127_3844932_3 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 296.0
DYD3_k127_3844932_4 PFAM TonB-dependent Receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000001211 265.0
DYD3_k127_3844932_5 Putative DNA-binding domain - - - 0.0000000000000000000002 111.0
DYD3_k127_3844932_6 - - - - 0.000000003026 61.0
DYD3_k127_3860795_0 ABC transporter K06147,K18893 - - 1.205e-248 783.0
DYD3_k127_3860795_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 2.078e-216 702.0
DYD3_k127_3860795_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000054 166.0
DYD3_k127_3860795_11 helix_turn_helix ASNC type K03719 - - 0.000000000000000000000000000000000000000005495 160.0
DYD3_k127_3860795_12 (belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family) - - - 0.00000000000000000000000000000000000003611 149.0
DYD3_k127_3860795_13 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000000000000005224 139.0
DYD3_k127_3860795_14 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.0000001246 53.0
DYD3_k127_3860795_15 4-Hydroxyphenylpyruvate dioxygenase K05606,K17315 - 5.1.99.1 0.00005385 54.0
DYD3_k127_3860795_2 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 512.0
DYD3_k127_3860795_3 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase K00162,K21417 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 513.0
DYD3_k127_3860795_4 Acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 511.0
DYD3_k127_3860795_5 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 483.0
DYD3_k127_3860795_6 Major facilitator Superfamily K03762 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008222 398.0
DYD3_k127_3860795_7 COG1071 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 372.0
DYD3_k127_3860795_8 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 302.0
DYD3_k127_3860795_9 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005161 299.0
DYD3_k127_3861395_0 DNA topological change K03168 - 5.99.1.2 5.017e-196 638.0
DYD3_k127_3861395_1 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005278 335.0
DYD3_k127_3861395_2 Ankyrin repeat - - - 0.0000000000000000000000000000001895 141.0
DYD3_k127_3861395_3 polysaccharide biosynthetic process - - - 0.00000000000000000000000000003883 131.0
DYD3_k127_3861395_6 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 K12488 GO:0001726,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005912,GO:0005924,GO:0005925,GO:0006928,GO:0008047,GO:0008150,GO:0009987,GO:0016477,GO:0030054,GO:0030055,GO:0030234,GO:0030695,GO:0031252,GO:0031974,GO:0031981,GO:0032231,GO:0032956,GO:0032970,GO:0033043,GO:0040011,GO:0042995,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043547,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051179,GO:0051336,GO:0051345,GO:0051492,GO:0051493,GO:0051674,GO:0060589,GO:0065007,GO:0065009,GO:0070013,GO:0070161,GO:0098772,GO:0110020,GO:0110053,GO:0120025,GO:1902903 - 0.000268 53.0
DYD3_k127_3921723_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 7.043e-276 866.0
DYD3_k127_3921723_1 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 500.0
DYD3_k127_3921723_10 - - - - 0.0000000000000000001148 95.0
DYD3_k127_3921723_2 Belongs to the FPP GGPP synthase family K02523 GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009108,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0042180,GO:0042181,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 375.0
DYD3_k127_3921723_3 Sulfotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008005 354.0
DYD3_k127_3921723_4 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 323.0
DYD3_k127_3921723_5 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000001076 260.0
DYD3_k127_3921723_6 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0000027,GO:0001558,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040008,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048518,GO:0050789,GO:0050794,GO:0051128,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904 - 0.000000000000000000000000000000000001086 139.0
DYD3_k127_3921723_7 Protein of unknown function (DUF1244) K09948 - - 0.000000000000000000000000000000002155 137.0
DYD3_k127_3921723_8 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000004862 131.0
DYD3_k127_3921723_9 - - - - 0.000000000000000000000000000001237 126.0
DYD3_k127_3923238_0 ABC transporter K06147,K06148 - - 3.895e-246 777.0
DYD3_k127_3923238_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 417.0
DYD3_k127_3923238_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000001604 249.0
DYD3_k127_3923238_3 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000003146 244.0
DYD3_k127_3926228_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1235.0
DYD3_k127_3926228_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 462.0
DYD3_k127_3926228_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 310.0
DYD3_k127_3926228_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000003432 260.0
DYD3_k127_3926228_4 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000001506 163.0
DYD3_k127_3926928_0 ABC transporter - - - 1.055e-281 873.0
DYD3_k127_3926928_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 365.0
DYD3_k127_3926928_2 unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins - - - 0.0000000000000001313 81.0
DYD3_k127_3926928_3 domain protein - - - 0.0001483 48.0
DYD3_k127_3933932_0 homoserine kinase activity K02204 - 2.7.1.39 0.0 1331.0
DYD3_k127_3933932_1 Glycogen debranching enzyme - - - 4.871e-222 708.0
DYD3_k127_3933932_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004595 528.0
DYD3_k127_3933932_3 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840,K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000001187 209.0
DYD3_k127_3937134_0 Formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0 1503.0
DYD3_k127_3937134_1 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124 - - 8.804e-243 767.0
DYD3_k127_3937134_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008986,GO:0009058,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019318,GO:0019319,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:1901576 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 533.0
DYD3_k127_3937134_3 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 415.0
DYD3_k127_3937134_4 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003994 280.0
DYD3_k127_3937134_5 COG0725 ABC-type molybdate transport system, periplasmic component K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001489 269.0
DYD3_k127_3937134_6 Thioredoxin-like [2Fe-2S] ferredoxin K00127 - - 0.0000000000000000000000000000000000000000000000000000000005887 204.0
DYD3_k127_3937134_7 - - - - 0.000000000000000000000000000000000000000000004741 174.0
DYD3_k127_3937134_8 PFAM Cys Met metabolism pyridoxal-phosphate-dependent protein K01740 - 2.5.1.49 0.000000000000000000000000000000000004064 140.0
DYD3_k127_3958958_0 Glycosyl hydrolase family 65, C-terminal domain - - - 0.0 1478.0
DYD3_k127_3958958_1 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0 1420.0
DYD3_k127_3958958_10 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 308.0
DYD3_k127_3958958_11 Acetyl xylan esterase (AXE1) K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001782 275.0
DYD3_k127_3958958_12 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000001154 228.0
DYD3_k127_3958958_13 universal stress protein K14055 - - 0.000000000000000000000000000000000000000000000000000001774 203.0
DYD3_k127_3958958_14 protein histidine kinase activity - - - 0.00000000000000000000000000000000000000000000002673 186.0
DYD3_k127_3958958_15 - - - - 0.000000000000000000000000000000000000000001502 164.0
DYD3_k127_3958958_16 GCN5 family acetyltransferase K09181 - - 0.00000000000000000000000000000000000000004047 156.0
DYD3_k127_3958958_17 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000000000001124 146.0
DYD3_k127_3958958_18 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000003566 134.0
DYD3_k127_3958958_19 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000004279 113.0
DYD3_k127_3958958_2 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1251.0
DYD3_k127_3958958_20 COG2010 Cytochrome c, mono- and diheme variants - - - 0.0000000000000000000002557 102.0
DYD3_k127_3958958_21 Belongs to the universal stress protein A family - - - 0.0000000000000000000003063 104.0
DYD3_k127_3958958_22 Belongs to the universal stress protein A family - - - 0.00000000000000000004418 95.0
DYD3_k127_3958958_23 Belongs to the universal stress protein A family - - - 0.00000000000003979 85.0
DYD3_k127_3958958_24 Universal stress protein UspA and related nucleotide-binding K14055 - - 0.0000000000001357 81.0
DYD3_k127_3958958_25 Histidine kinase - - - 0.000000000000358 78.0
DYD3_k127_3958958_3 Cation transport ATPase (P-type) K01537 - 3.6.3.8 9.563e-281 889.0
DYD3_k127_3958958_4 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions - - - 8.504e-256 797.0
DYD3_k127_3958958_5 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.704e-235 755.0
DYD3_k127_3958958_6 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009441 620.0
DYD3_k127_3958958_7 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 440.0
DYD3_k127_3958958_8 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 382.0
DYD3_k127_3958958_9 PhoPQ-activated pathogenicity-related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000892 314.0
DYD3_k127_3985013_0 Pyridine nucleotide-disulphide oxidoreductase K00362,K05297 - 1.18.1.1,1.7.1.15 0.0 1273.0
DYD3_k127_3985013_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 1.449e-260 827.0
DYD3_k127_3985013_2 nitrite reductase K00363 - 1.7.1.15 0.00000000000000000000000000000000003952 138.0
DYD3_k127_3999639_0 PFAM ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 563.0
DYD3_k127_3999639_1 - - - - 0.00000000000000000000000000000000000000000000000000000003295 205.0
DYD3_k127_3999639_2 - - - - 0.000000000000000009585 88.0
DYD3_k127_3999639_3 Forkhead associated domain K01990,K21397 - - 0.00000000003918 76.0
DYD3_k127_4011398_0 Protein conserved in bacteria - - - 4.92e-203 642.0
DYD3_k127_4011398_1 PFAM Neutral alkaline nonlysosomal ceramidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000991 575.0
DYD3_k127_4011398_10 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 294.0
DYD3_k127_4011398_12 - - - - 0.0000000000000000000000000000000000000001678 163.0
DYD3_k127_4011398_13 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000001404 150.0
DYD3_k127_4011398_14 phospholipase Carboxylesterase - - - 0.000000000000000000000000000000029 141.0
DYD3_k127_4011398_15 Tripartite tricarboxylate transporter TctB family - - - 0.000000001154 66.0
DYD3_k127_4011398_16 - - - - 0.000002197 54.0
DYD3_k127_4011398_2 MmgE/PrpD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 591.0
DYD3_k127_4011398_3 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 556.0
DYD3_k127_4011398_4 ABC-type sugar transport system periplasmic component K10552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 443.0
DYD3_k127_4011398_5 Belongs to the binding-protein-dependent transport system permease family K10553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 442.0
DYD3_k127_4011398_6 carboxylic ester hydrolase activity K03929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 444.0
DYD3_k127_4011398_7 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005869 396.0
DYD3_k127_4011398_8 ABC transporter K10554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 380.0
DYD3_k127_4011398_9 Di-haem oxidoreductase, putative peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005933 345.0
DYD3_k127_4028078_0 3-oxoacyl- acyl-carrier-protein reductase K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0030497,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001533 284.0
DYD3_k127_4028078_1 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000001078 164.0
DYD3_k127_4028078_2 Rhomboid family - - - 0.0000000000000000000000000000000000002014 148.0
DYD3_k127_4028078_3 General secretion pathway protein J K02459 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0098776 - 0.0000000000000000000000000000000009616 143.0
DYD3_k127_4028078_4 Type II secretion system (T2SS), protein K K02460 - - 0.000000000000000000000000000001057 135.0
DYD3_k127_4028078_5 Type II secretion system (T2SS), protein I - - - 0.000000000000000009754 89.0
DYD3_k127_4028078_6 general secretion pathway protein K02457 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000001492 74.0
DYD3_k127_4028078_7 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000002827 53.0
DYD3_k127_4079094_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 3.556e-241 784.0
DYD3_k127_4079094_1 Ring hydroxylating alpha subunit (catalytic domain) K03268,K05708 - 1.14.12.11,1.14.12.19,1.14.12.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007376 518.0
DYD3_k127_4079094_2 Tannase and feruloyl esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004775 341.0
DYD3_k127_4079094_3 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00042 - 1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000001349 244.0
DYD3_k127_4079094_4 NlpE N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000008474 245.0
DYD3_k127_4079094_5 PFAM helix-turn-helix- domain containing protein AraC type K18954 - - 0.000000000000000000000000000000000000000000000000000000000002434 222.0
DYD3_k127_4079094_6 PFAM aromatic-ring-hydroxylating dioxygenase, beta subunit - - - 0.0000000000000000000000000000000000000000000004532 181.0
DYD3_k127_4079094_7 COG2076 Membrane transporters of cations and cationic drugs K11741 - - 0.0000000000000000000000000000000000001424 147.0
DYD3_k127_4086797_0 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 622.0
DYD3_k127_4086797_1 SMART Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 428.0
DYD3_k127_4086797_2 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000608 191.0
DYD3_k127_4086797_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.0000000000000000000002743 99.0
DYD3_k127_4086797_4 Transcriptional regulator - - - 0.00004768 52.0
DYD3_k127_4110252_0 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000388 450.0
DYD3_k127_4110252_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 407.0
DYD3_k127_4110252_10 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000003705 141.0
DYD3_k127_4110252_11 - - - - 0.0000000000000000000000000000005947 131.0
DYD3_k127_4110252_12 MobA-related protein K07141,K19190 - 1.1.1.328,2.7.7.76 0.00000000000000000000000000000343 128.0
DYD3_k127_4110252_13 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000009336 61.0
DYD3_k127_4110252_2 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008904 403.0
DYD3_k127_4110252_3 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007151 301.0
DYD3_k127_4110252_4 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002049 281.0
DYD3_k127_4110252_5 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000000000000000000000333 248.0
DYD3_k127_4110252_6 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000007731 194.0
DYD3_k127_4110252_7 PFAM molybdopterin biosynthesis MoaE protein K03635 - 2.8.1.12 0.000000000000000000000000000000000000000000000000004924 190.0
DYD3_k127_4110252_8 response to oxidative stress K04063 - - 0.0000000000000000000000000000000000000000000000001545 180.0
DYD3_k127_4110252_9 Prokaryotic N-terminal methylation motif K02655 - - 0.0000000000000000000000000000000003531 138.0
DYD3_k127_4113360_0 Psort location Cytoplasmic, score 8.96 K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007482 373.0
DYD3_k127_4113360_1 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 354.0
DYD3_k127_4113360_2 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 325.0
DYD3_k127_4113360_3 Amidase K01426 - 3.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 310.0
DYD3_k127_4113360_4 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002829 274.0
DYD3_k127_4113360_5 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.00000000000000000000000000000000000000000000000000000000000000000001291 247.0
DYD3_k127_4113360_6 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000001825 157.0
DYD3_k127_4113360_7 Protein of unknown function DUF86 - - - 0.000000000000000000000003485 106.0
DYD3_k127_4113360_8 photosystem II stabilization K00784,K02237 GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 3.1.26.11 0.000000000009106 69.0
DYD3_k127_4113360_9 Nucleotidyltransferase domain K07076 - - 0.00000003971 66.0
DYD3_k127_4114788_0 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 609.0
DYD3_k127_4114788_1 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002483 286.0
DYD3_k127_4114788_2 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003784 277.0
DYD3_k127_4114788_3 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000001276 248.0
DYD3_k127_4114788_4 pseudouridine synthase activity K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000001052 231.0
DYD3_k127_4114788_5 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000008026 206.0
DYD3_k127_4114788_6 Uracil DNA glycosylase superfamily - - - 0.00000000000000000000000000000000000000000000000000004826 192.0
DYD3_k127_4114788_7 Protein of unknown function (DUF3999) - - - 0.000000000000000004323 100.0
DYD3_k127_4114788_8 amine dehydrogenase activity K20276 - - 0.000000000000000007118 100.0
DYD3_k127_4114788_9 Macrocin-O-methyltransferase (TylF) K05303 - - 0.000000000000241 83.0
DYD3_k127_4118825_0 PQQ enzyme repeat K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 620.0
DYD3_k127_4118825_1 Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins - GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018117,GO:0018175,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046983,GO:0070566,GO:0070733,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005122 452.0
DYD3_k127_4118825_10 COG0433 Predicted ATPase - - - 0.000000000004277 80.0
DYD3_k127_4118825_11 - - - - 0.00001578 52.0
DYD3_k127_4118825_12 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.0004483 53.0
DYD3_k127_4118825_2 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007797 278.0
DYD3_k127_4118825_3 Putative peptidoglycan binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004468 272.0
DYD3_k127_4118825_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005161 282.0
DYD3_k127_4118825_5 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000037 190.0
DYD3_k127_4118825_6 - - - - 0.0000000000000000000000000000000000000000000000002494 183.0
DYD3_k127_4118825_7 - - - - 0.00000000000000000000000000000000000000003432 171.0
DYD3_k127_4118825_8 - - - - 0.000000000000000000000000001709 117.0
DYD3_k127_4118825_9 membrane - - - 0.00000000000000000002319 97.0
DYD3_k127_4129023_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008907 529.0
DYD3_k127_4129023_1 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 423.0
DYD3_k127_4129023_10 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000008771 242.0
DYD3_k127_4129023_11 NADP oxidoreductase, coenzyme f420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000001274 227.0
DYD3_k127_4129023_12 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000000001587 188.0
DYD3_k127_4129023_13 PFAM PspA IM30 - - - 0.0000000000000000000000000003639 120.0
DYD3_k127_4129023_14 - - - - 0.00000000000000000000000002362 122.0
DYD3_k127_4129023_15 Belongs to the bacterial solute-binding protein 9 family K09815,K15727 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000001065 98.0
DYD3_k127_4129023_16 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000005491 63.0
DYD3_k127_4129023_2 Transaldolase/Fructose-6-phosphate aldolase K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 424.0
DYD3_k127_4129023_3 PFAM Three-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 404.0
DYD3_k127_4129023_4 von Willebrand factor, type A K11912 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 413.0
DYD3_k127_4129023_5 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 400.0
DYD3_k127_4129023_6 response regulator K07776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 310.0
DYD3_k127_4129023_7 Dehydrogenase K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 320.0
DYD3_k127_4129023_8 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006917 295.0
DYD3_k127_4129023_9 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004739 247.0
DYD3_k127_4140429_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 574.0
DYD3_k127_4140429_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001471 248.0
DYD3_k127_4140429_2 Transcription factor K19687 - - 0.0000000000000000000005784 103.0
DYD3_k127_4140429_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K19686 - - 0.00000000000004693 77.0
DYD3_k127_4171672_0 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003976 580.0
DYD3_k127_4171672_2 - - - - 0.000000000000000000000000000000000000000000000007613 186.0
DYD3_k127_4171672_4 NIPSNAP - - - 0.000000000000000000000000000000000000009513 149.0
DYD3_k127_4171672_5 methyltransferase - - - 0.0000000000000000000000000007202 122.0
DYD3_k127_4171672_6 conserved protein, contains double-stranded beta-helix domain - - - 0.0000000000000000000005382 101.0
DYD3_k127_4171672_8 Putative zinc- or iron-chelating domain - - - 0.00005907 53.0
DYD3_k127_4196847_1 chaperone-mediated protein folding - - - 1.614e-244 773.0
DYD3_k127_4196847_10 Domain of unknown function (DUF892) - - - 0.0000000000000000000000000007294 126.0
DYD3_k127_4196847_11 SdpI/YhfL protein family - - - 0.000000000000000006619 94.0
DYD3_k127_4196847_12 Hemerythrin HHE cation binding domain - - - 0.00000000001502 76.0
DYD3_k127_4196847_2 efflux transmembrane transporter activity - - - 1.053e-229 737.0
DYD3_k127_4196847_3 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009493 534.0
DYD3_k127_4196847_4 Dicarboxylate carrier protein MatC N-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009573 385.0
DYD3_k127_4196847_5 beta-lactamase activity K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 353.0
DYD3_k127_4196847_6 PQQ-like domain K17760 - 1.1.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001755 260.0
DYD3_k127_4196847_7 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000001283 236.0
DYD3_k127_4196847_8 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000002616 189.0
DYD3_k127_4196847_9 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000004053 128.0
DYD3_k127_4229546_0 efflux transmembrane transporter activity - - - 8.555e-243 776.0
DYD3_k127_4229546_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 600.0
DYD3_k127_4229546_2 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 411.0
DYD3_k127_4229546_3 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 322.0
DYD3_k127_4229546_4 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 317.0
DYD3_k127_4229546_5 Antirepressor regulating drug resistance - - - 0.00000000000000000000000000000002071 141.0
DYD3_k127_4229546_6 Penicillinase repressor - - - 0.0000000000000000000000000001886 119.0
DYD3_k127_4229546_7 MacB-like periplasmic core domain - - - 0.000000000000000000000000001491 116.0
DYD3_k127_4229546_8 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000008409 112.0
DYD3_k127_424279_0 PQQ-like domain K00117 - 1.1.5.2 7.328e-209 667.0
DYD3_k127_424279_1 Pyridoxal-dependent decarboxylase conserved domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002833 598.0
DYD3_k127_424279_10 HupE / UreJ protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004734 298.0
DYD3_k127_424279_11 Periplasmic glucan biosynthesis protein, MdoG K03670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006605 270.0
DYD3_k127_424279_12 peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000001381 264.0
DYD3_k127_424279_13 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000000000015 169.0
DYD3_k127_424279_14 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000001692 132.0
DYD3_k127_424279_15 - - - - 0.000000000000000000000000000002321 134.0
DYD3_k127_424279_16 RHS Repeat - - - 0.00000000000000000000000000001887 137.0
DYD3_k127_424279_17 PRC-barrel domain - - - 0.000000000003712 77.0
DYD3_k127_424279_2 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 533.0
DYD3_k127_424279_3 Dynamin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 517.0
DYD3_k127_424279_4 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000829 501.0
DYD3_k127_424279_5 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007825 465.0
DYD3_k127_424279_7 COG0655 Multimeric flavodoxin WrbA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 404.0
DYD3_k127_424279_8 Histidine-specific methyltransferase, SAM-dependent K18911 - 2.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005772 350.0
DYD3_k127_424279_9 Coenzyme F420-dependent N5N10-methylene tetrahydromethanopterin reductase and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 316.0
DYD3_k127_4246986_0 Belongs to the glycosyl hydrolase 3 family - - - 1.791e-305 952.0
DYD3_k127_4246986_1 SbmA/BacA-like family - - - 1.668e-232 736.0
DYD3_k127_4246986_10 Putative porin - GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000002059 263.0
DYD3_k127_4246986_11 serine protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001497 268.0
DYD3_k127_4246986_12 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006478 249.0
DYD3_k127_4246986_14 Protein of unknown function (DUF2914) - - - 0.00000000000000000000000000000000000000000000000000000000000000001776 238.0
DYD3_k127_4246986_15 - - - - 0.0000000000000000000000000000000000000000000000000000000000001087 227.0
DYD3_k127_4246986_16 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000002057 218.0
DYD3_k127_4246986_17 - - - - 0.0000000000000000000000000000000000000000000000000000000004971 210.0
DYD3_k127_4246986_18 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.0000000000000000000000000000000000000000000000000007536 191.0
DYD3_k127_4246986_19 WD40 repeats - - - 0.00000000000000000000000000000000000000000000000002592 192.0
DYD3_k127_4246986_2 Putative glucoamylase - - - 2.352e-206 650.0
DYD3_k127_4246986_20 HDOD domain - - - 0.0000000000000000000000000000000000000000000000004224 187.0
DYD3_k127_4246986_21 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000000000000000000000000000000003176 178.0
DYD3_k127_4246986_22 - - - - 0.000000000000000000000000000000000000000002268 174.0
DYD3_k127_4246986_23 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000001524 162.0
DYD3_k127_4246986_24 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000004695 156.0
DYD3_k127_4246986_25 PFAM electron transport protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000003242 144.0
DYD3_k127_4246986_26 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000002842 137.0
DYD3_k127_4246986_27 CHRD domain - - - 0.000000000000000000000000000007768 128.0
DYD3_k127_4246986_28 protein conserved in bacteria K09796 - - 0.000000000000000000000001478 111.0
DYD3_k127_4246986_29 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000001781 110.0
DYD3_k127_4246986_3 Glycosyl hydrolases family 15 K01178 - 3.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 522.0
DYD3_k127_4246986_30 Polymer-forming cytoskeletal - - - 0.000000000000000000001886 109.0
DYD3_k127_4246986_31 Bacterial protein of unknown function (DUF883) - - - 0.0000000000000000001814 92.0
DYD3_k127_4246986_32 Outer membrane protein beta-barrel domain - - - 0.000000000000005552 83.0
DYD3_k127_4246986_34 TIGRFAM conserved - - - 0.00001647 56.0
DYD3_k127_4246986_35 lipoprotein NlpE involved in copper resistance - - - 0.00005682 53.0
DYD3_k127_4246986_36 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0005415 48.0
DYD3_k127_4246986_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 426.0
DYD3_k127_4246986_5 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009194 422.0
DYD3_k127_4246986_6 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 422.0
DYD3_k127_4246986_7 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 377.0
DYD3_k127_4246986_8 Protein of unknown function (DUF3750) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003671 281.0
DYD3_k127_4246986_9 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005228 286.0
DYD3_k127_4247597_0 Sulfite reductase K00381 - 1.8.1.2 2.05e-233 734.0
DYD3_k127_4247597_1 Lysin motif K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 399.0
DYD3_k127_4247597_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004313 386.0
DYD3_k127_4247597_3 acetylesterase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 289.0
DYD3_k127_4247597_4 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000004899 239.0
DYD3_k127_4247597_5 Peptidase family M23 K21472 - - 0.0000000000000000000000000000000000000000000000001402 199.0
DYD3_k127_4247597_6 Bacterial protein of unknown function (DUF934) - - - 0.000000000000000000000000000000000000000000000002642 188.0
DYD3_k127_4247597_7 Protein of unknown function (DUF2849) - - - 0.000000000008116 70.0
DYD3_k127_4277639_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 9.211e-210 664.0
DYD3_k127_4277639_1 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 524.0
DYD3_k127_4277639_2 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009202 336.0
DYD3_k127_4277639_3 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000001028 184.0
DYD3_k127_4277639_4 Domain of unknown function (DUF4340) - - - 0.0000000000000000000000000000000000000004749 164.0
DYD3_k127_4277639_5 - - - - 0.00000000000000000000000000000000000001047 153.0
DYD3_k127_4277639_6 - - - - 0.00000000000000000000000000000000000001199 152.0
DYD3_k127_4277639_7 NADPH quinone K00344 - 1.6.5.5 0.0000000000000000000000000000000000002542 142.0
DYD3_k127_4277639_8 Thioredoxin K03673 - - 0.000000000000000000002122 109.0
DYD3_k127_4277639_9 ECF sigma factor K03088 - - 0.000000000000000003157 92.0
DYD3_k127_4325756_0 Dehydrogenase K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 492.0
DYD3_k127_4325756_1 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004188 418.0
DYD3_k127_4325756_10 stress protein (general stress protein 26) - - - 0.000000000000000000000004565 108.0
DYD3_k127_4325756_11 Polysaccharide deacetylase - - - 0.00001182 53.0
DYD3_k127_4325756_2 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 382.0
DYD3_k127_4325756_3 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008704 360.0
DYD3_k127_4325756_4 PFAM Patatin K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 347.0
DYD3_k127_4325756_5 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 343.0
DYD3_k127_4325756_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002076 239.0
DYD3_k127_4325756_7 PFAM Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000001924 177.0
DYD3_k127_4325756_8 transcription activator, effector binding K13652 - - 0.0000000000000000000000000000005684 139.0
DYD3_k127_4325756_9 Cupin - - - 0.0000000000000000000000000001056 119.0
DYD3_k127_4342441_0 Cytochrome C and Quinol oxidase polypeptide I K15408 - 1.9.3.1 0.0 1253.0
DYD3_k127_4342441_1 FAD linked oxidases, C-terminal domain K06911 - - 0.0 1096.0
DYD3_k127_4342441_2 Glycosyl hydrolases family 15 - - - 1.224e-287 895.0
DYD3_k127_4342441_3 Belongs to the TPP enzyme family K00156 - 1.2.5.1 1.701e-261 822.0
DYD3_k127_4342441_4 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 426.0
DYD3_k127_4342441_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 347.0
DYD3_k127_4342441_6 COG0530 Ca2 Na antiporter K07301 - - 0.000000000000000000000000000000000000000000000000000000000000004052 232.0
DYD3_k127_4342441_7 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) K02351 - - 0.00000000000000000000000000000000000000000002571 170.0
DYD3_k127_4342441_8 - - - - 0.000000000000000000000000000000001828 139.0
DYD3_k127_4342441_9 Cytochrome C oxidase subunit II, periplasmic domain K02275 - 1.9.3.1 0.00000008084 56.0
DYD3_k127_439113_0 MatE - - - 4.463e-235 737.0
DYD3_k127_439113_1 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 2.185e-224 711.0
DYD3_k127_439113_10 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000833 195.0
DYD3_k127_439113_11 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.0000000000000000000000000000000000000000000000000002116 201.0
DYD3_k127_439113_12 Protein of unknown function (DUF1428) - - - 0.00000000000000000000000000000000000000000008372 169.0
DYD3_k127_439113_13 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000003982 163.0
DYD3_k127_439113_14 - - - - 0.00000000000000000000000000000000006294 148.0
DYD3_k127_439113_15 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000001187 118.0
DYD3_k127_439113_2 Dehydrogenase K00117 - 1.1.5.2 2.68e-211 676.0
DYD3_k127_439113_3 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 581.0
DYD3_k127_439113_4 PQQ-like domain K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 508.0
DYD3_k127_439113_5 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 451.0
DYD3_k127_439113_6 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000004997 236.0
DYD3_k127_439113_7 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000096 210.0
DYD3_k127_439113_8 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000001288 204.0
DYD3_k127_439113_9 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000001773 207.0
DYD3_k127_4392121_0 TIGRFAM A G-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 405.0
DYD3_k127_4392121_1 PFAM AsmA family protein K07289 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007618 333.0
DYD3_k127_4392121_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 312.0
DYD3_k127_4392121_3 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 308.0
DYD3_k127_4392121_4 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002052 294.0
DYD3_k127_4392121_5 catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000003653 242.0
DYD3_k127_4392121_6 PFAM Major Facilitator Superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000003263 222.0
DYD3_k127_4392121_7 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000008089 186.0
DYD3_k127_4392121_8 Putative heavy-metal-binding - - - 0.000000000000000000000000000000000006867 145.0
DYD3_k127_4392121_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000006838 102.0
DYD3_k127_440800_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 4.415e-244 758.0
DYD3_k127_440800_1 efflux transmembrane transporter activity - - - 2.496e-202 657.0
DYD3_k127_440800_10 Glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000000000000215 196.0
DYD3_k127_440800_11 - - - - 0.000000000000000000000000008034 121.0
DYD3_k127_440800_12 Transcriptional regulator PadR-like family - - - 0.000000000000000000006648 106.0
DYD3_k127_440800_13 - - - - 0.00000005646 64.0
DYD3_k127_440800_2 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006303 421.0
DYD3_k127_440800_4 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 381.0
DYD3_k127_440800_5 CoA binding domain K06929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001072 273.0
DYD3_k127_440800_6 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000003677 231.0
DYD3_k127_440800_7 dioxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000003741 214.0
DYD3_k127_440800_8 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000006368 222.0
DYD3_k127_440800_9 -acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000001852 211.0
DYD3_k127_4410898_0 Mechanosensitive ion channel K22044 - - 4.461e-200 647.0
DYD3_k127_4410898_1 glucose sorbosone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 359.0
DYD3_k127_4410898_2 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000003538 174.0
DYD3_k127_4410898_3 ABC-type multidrug transport system ATPase component K21397 - - 0.0000000000000000000000000000000000003205 148.0
DYD3_k127_4410898_4 - - - - 0.000000000000000000000000002636 124.0
DYD3_k127_442075_0 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009583 542.0
DYD3_k127_442075_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 346.0
DYD3_k127_442075_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 325.0
DYD3_k127_4452255_0 ADP binding - - - 5.122e-221 738.0
DYD3_k127_4452255_1 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 5.001e-203 657.0
DYD3_k127_4452255_2 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 500.0
DYD3_k127_4452255_3 FAD linked oxidase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000462 486.0
DYD3_k127_4452255_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004094 407.0
DYD3_k127_4452255_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000005993 248.0
DYD3_k127_4452255_6 chlorophyll binding K16191,K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000004186 251.0
DYD3_k127_4452255_7 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000001442 181.0
DYD3_k127_4452255_8 Uncharacterized protein conserved in bacteria (DUF2236) - - - 0.00000000000000000000000000000000125 151.0
DYD3_k127_4452255_9 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000001295 109.0
DYD3_k127_4471999_0 Magnesium transport protein CorA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 577.0
DYD3_k127_4471999_1 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004761 587.0
DYD3_k127_4471999_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 556.0
DYD3_k127_4471999_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 391.0
DYD3_k127_4471999_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008125 317.0
DYD3_k127_4471999_5 - - - - 0.0000000000000000000000000000000000000000000773 166.0
DYD3_k127_4471999_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000001374 122.0
DYD3_k127_4472101_0 Acyltransferase family K11941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002156 293.0
DYD3_k127_4472101_1 Putative esterase K07017 - - 0.00000000000000000000000000000000000000000000004471 187.0
DYD3_k127_4472101_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000001781 123.0
DYD3_k127_4472101_3 Chlorophyllase - - - 0.000000000000000000001231 110.0
DYD3_k127_4472101_4 Metallo-beta-lactamase superfamily - - - 0.0000001555 61.0
DYD3_k127_4487679_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005102 527.0
DYD3_k127_4487679_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006779 368.0
DYD3_k127_4487679_10 Periplasmic binding protein K02016 - - 0.00004313 48.0
DYD3_k127_4487679_2 Lipocalin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 366.0
DYD3_k127_4487679_3 FecCD transport family K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 352.0
DYD3_k127_4487679_4 ATP-binding protein K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000001127 233.0
DYD3_k127_4487679_5 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000001238 222.0
DYD3_k127_4487679_6 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000662 205.0
DYD3_k127_4487679_7 Phosphoserine phosphatase - - - 0.0000000000000000000000000000000000000000000000003877 192.0
DYD3_k127_4487679_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000004562 172.0
DYD3_k127_4487679_9 - - - - 0.00000000007609 63.0
DYD3_k127_450250_0 Hydroxymethylglutaryl-coenzyme A reductase K00054 - 1.1.1.88 8.296e-313 977.0
DYD3_k127_450250_1 Exporters of the RND superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 509.0
DYD3_k127_450250_2 3-beta hydroxysteroid dehydrogenase/isomerase family K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 388.0
DYD3_k127_450250_3 GHMP kinases N terminal domain K01597 - 4.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 368.0
DYD3_k127_450250_4 GHMP kinases N terminal domain K00938 - 2.7.4.2 0.000000000000000000000000000000000000000000000523 179.0
DYD3_k127_450250_5 Phosphorylase superfamily K01243 - 3.2.2.9 0.0000608 53.0
DYD3_k127_4504366_0 Radical SAM superfamily K01843 - 5.4.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 569.0
DYD3_k127_4504366_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 553.0
DYD3_k127_4504366_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004669 531.0
DYD3_k127_4504366_3 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 469.0
DYD3_k127_4504366_4 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006314 373.0
DYD3_k127_4504366_5 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191 327.0
DYD3_k127_4504366_6 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000009795 268.0
DYD3_k127_4504366_7 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.000000000000000000000000000000000000000000000000000000002778 205.0
DYD3_k127_4504366_8 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000002922 143.0
DYD3_k127_4504366_9 Outer membrane protein peptidoglycan-associated (Lipo)protein K03286 - - 0.000005522 55.0
DYD3_k127_4527588_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 604.0
DYD3_k127_4527588_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 590.0
DYD3_k127_4527588_10 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA K11719 - - 0.000000000001497 76.0
DYD3_k127_4527588_11 PFAM Glutathione S-transferase K03599 - - 0.000000004402 59.0
DYD3_k127_4527588_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 432.0
DYD3_k127_4527588_3 abc transporter atp-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005916 349.0
DYD3_k127_4527588_4 Displays ATPase and GTPase activities K06958 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 316.0
DYD3_k127_4527588_5 Belongs to the peptidase S1C family K04691,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0033554,GO:0035966,GO:0035967,GO:0042221,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0051788,GO:0070011,GO:0070887,GO:0071218,GO:0071310,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002698 280.0
DYD3_k127_4527588_6 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000004952 262.0
DYD3_k127_4527588_7 Cytochrome C1 family K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001935 256.0
DYD3_k127_4527588_8 COG1544 Ribosome-associated protein Y (PSrp-1) K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.0000000000000000000000000000000001294 134.0
DYD3_k127_4527588_9 Belongs to the BolA IbaG family - - - 0.0000000000000000002486 92.0
DYD3_k127_4542923_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 499.0
DYD3_k127_4542923_1 - - - - 0.00000000000000000000000000000000000000000000555 177.0
DYD3_k127_4542923_2 PFAM SMP-30 Gluconolaconase LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000006676 167.0
DYD3_k127_4542923_3 - - - - 0.0000000000001314 79.0
DYD3_k127_4542923_4 (FHA) domain - - - 0.00000000009655 75.0
DYD3_k127_4548995_0 Sodium:sulfate symporter transmembrane region K03319,K14445 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 583.0
DYD3_k127_4548995_1 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 379.0
DYD3_k127_4548995_2 Putative ABC exporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003514 276.0
DYD3_k127_4548995_3 Flavodoxin-like fold K19784 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002604 253.0
DYD3_k127_4548995_4 - - - - 0.0000000000000000000001047 108.0
DYD3_k127_4548995_6 - - - - 0.0000008003 57.0
DYD3_k127_4551719_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 360.0
DYD3_k127_4551719_1 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003389 319.0
DYD3_k127_4551719_2 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003866 303.0
DYD3_k127_4551719_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000003547 234.0
DYD3_k127_4553633_0 Carbohydrate family 9 binding domain-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 405.0
DYD3_k127_4553633_1 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000006686 228.0
DYD3_k127_4553633_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000001207 225.0
DYD3_k127_4553633_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000001081 187.0
DYD3_k127_4553633_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18298,K19586 - - 0.0000000001827 63.0
DYD3_k127_4561_0 ATPases involved in chromosome partitioning K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 348.0
DYD3_k127_4561_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000943 321.0
DYD3_k127_4561_2 Belongs to the ABC transporter superfamily K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 317.0
DYD3_k127_4561_3 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000369 307.0
DYD3_k127_4561_4 cytochrome - - - 0.00000000000000000000000000000000000000000001915 171.0
DYD3_k127_4561_5 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000006709 147.0
DYD3_k127_4561_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000001097 105.0
DYD3_k127_4561_7 atp synthase K02116 GO:0003674,GO:0003824,GO:0005215,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044769,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000002388 85.0
DYD3_k127_4566578_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11745,K11747 - - 1.601e-240 763.0
DYD3_k127_4566578_1 xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 1.324e-220 719.0
DYD3_k127_4566578_10 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004669 308.0
DYD3_k127_4566578_11 PRMT5 arginine-N-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002577 284.0
DYD3_k127_4566578_12 Carboxylesterase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001706 272.0
DYD3_k127_4566578_13 RDD family - - - 0.000000000000000000000000000000000000000000000000000000000000000002753 233.0
DYD3_k127_4566578_14 - - - - 0.00000000000000000000000000000000000000000000000000000000000000008497 229.0
DYD3_k127_4566578_15 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000005037 212.0
DYD3_k127_4566578_16 PFAM helix-turn-helix- domain containing protein AraC type - - - 0.0000000000000000000000000000000000000000000000000001501 204.0
DYD3_k127_4566578_17 Domain of unknown function (DUF4129) - - - 0.000000000000000000000000000000000000000000000008147 181.0
DYD3_k127_4566578_18 Membrane - - - 0.0000000000000000000000000000000000000000000001009 189.0
DYD3_k127_4566578_19 Domain of unknown function (DUF5122) beta-propeller - - - 0.00000000000000000000000000000000000000001888 175.0
DYD3_k127_4566578_2 peptidase M13 - - - 3.736e-219 699.0
DYD3_k127_4566578_20 Transcription elongation factor, GreA/GreB, C-term - - - 0.000000000000000000000000000000000001264 143.0
DYD3_k127_4566578_21 - - - - 0.000000000000000000000000000000000001644 141.0
DYD3_k127_4566578_22 Adenylate cyclase - - - 0.0000000000000000000000000000000005393 145.0
DYD3_k127_4566578_23 - - - - 0.0000000000000000000000001574 111.0
DYD3_k127_4566578_24 membrane protein domain - - - 0.0000000000000000001597 95.0
DYD3_k127_4566578_25 pyrroloquinoline quinone binding K12287 - - 0.0000009682 62.0
DYD3_k127_4566578_26 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000001108 61.0
DYD3_k127_4566578_3 MatE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003552 550.0
DYD3_k127_4566578_4 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003026 447.0
DYD3_k127_4566578_5 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 384.0
DYD3_k127_4566578_6 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 367.0
DYD3_k127_4566578_7 Enoyl-CoA hydratase/isomerase K18383 - 4.1.2.41,4.2.1.101 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 334.0
DYD3_k127_4566578_8 Stage II sporulation protein M - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 318.0
DYD3_k127_4573961_0 radical SAM domain protein - - - 3.53e-224 705.0
DYD3_k127_4573961_1 SMART transcription factor jumonji jmjC K18850 - 1.14.11.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 424.0
DYD3_k127_4573961_2 L-lactate dehydrogenase K00101,K16422 - 1.1.2.3,1.1.3.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 367.0
DYD3_k127_4573961_3 Amidohydrolase K22213 - 4.1.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 296.0
DYD3_k127_4573961_4 Belongs to the Dps family K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000008345 205.0
DYD3_k127_4573961_5 SnoaL-like domain - - - 0.0000000000000000000000000000000005986 138.0
DYD3_k127_4573961_6 O-methyltransferase K09846 - 2.1.1.210 0.0000000000000000000000000000006647 125.0
DYD3_k127_4573961_7 - - - - 0.00000000000000000005397 100.0
DYD3_k127_4573961_8 - - - - 0.000000000000005817 80.0
DYD3_k127_4573961_9 - - - - 0.000002731 57.0
DYD3_k127_4575244_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1062.0
DYD3_k127_4575244_1 Belongs to the aldehyde dehydrogenase family K00151 - 1.2.1.60 2.635e-222 705.0
DYD3_k127_4575244_2 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04101,K05713 - 1.13.11.16,1.13.11.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 417.0
DYD3_k127_4575244_3 4-hydroxy-tetrahydrodipicolinate synthase K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 377.0
DYD3_k127_4575244_4 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K01826 - 5.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 350.0
DYD3_k127_4575244_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009587 319.0
DYD3_k127_4575244_6 Putative neutral zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000324 263.0
DYD3_k127_4575244_7 PFAM Extradiol ring-cleavage dioxygenase LigAB LigA subunit - - - 0.00000000000000000000000000000000475 132.0
DYD3_k127_4575244_8 5-carboxymethyl-2-hydroxymuconate isomerase K01826 - 5.3.3.10 0.00000000000000000000000000001021 122.0
DYD3_k127_4581646_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 548.0
DYD3_k127_4581646_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 440.0
DYD3_k127_4581646_2 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005477 319.0
DYD3_k127_4581646_3 type I secretion outer membrane protein, TolC K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 317.0
DYD3_k127_4581646_4 O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000001213 207.0
DYD3_k127_4581646_5 PFAM Rhodanese domain protein - - - 0.00000000000000000000000000001864 121.0
DYD3_k127_4605451_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1283.0
DYD3_k127_4605451_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 338.0
DYD3_k127_4605451_2 glucose sorbosone - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 300.0
DYD3_k127_4605451_3 Protein of unknown function (DUF3500) - - - 0.00000000000000000000000000000000000000000000000000000000001755 224.0
DYD3_k127_4605451_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000008167 192.0
DYD3_k127_4605451_5 TraB family - - - 0.0000000000000000000000000000000000000000000001247 186.0
DYD3_k127_4605451_6 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000003832 180.0
DYD3_k127_4605451_7 Protein of unknown function (DUF3240) - - - 0.0000000009745 69.0
DYD3_k127_46175_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 1.602e-209 660.0
DYD3_k127_46175_1 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000005717 188.0
DYD3_k127_46175_2 COG2030 Acyl dehydratase - - - 0.000000000000000000000000000000000000000000000000005007 185.0
DYD3_k127_46175_3 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000001914 173.0
DYD3_k127_46175_4 - - - - 0.000000000000000000000000000000000000003843 155.0
DYD3_k127_46175_5 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000001715 145.0
DYD3_k127_4623386_0 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 2.08e-202 640.0
DYD3_k127_4623386_1 MacB-like periplasmic core domain - - - 9.137e-195 639.0
DYD3_k127_4623386_10 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.000000000000000000000000000000008686 141.0
DYD3_k127_4623386_11 Haem-degrading - - - 0.00000000000000000000000000000003939 141.0
DYD3_k127_4623386_2 DNA topological change K03168 - 5.99.1.2 7.681e-194 633.0
DYD3_k127_4623386_3 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 348.0
DYD3_k127_4623386_4 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 340.0
DYD3_k127_4623386_5 Glutamine amidotransferase class-I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 299.0
DYD3_k127_4623386_6 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000003311 265.0
DYD3_k127_4623386_7 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000003904 246.0
DYD3_k127_4623386_8 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000001935 222.0
DYD3_k127_4623386_9 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000000000000001455 176.0
DYD3_k127_4630735_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 412.0
DYD3_k127_4630735_1 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000000000000000000001114 195.0
DYD3_k127_4630735_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.0000000000000000000000000000000000000000001793 167.0
DYD3_k127_4630735_3 COG0346 Lactoylglutathione lyase and related lyases - - - 0.0000000000000000000000000000000000003516 145.0
DYD3_k127_4630735_4 Transcriptional regulator K07727 - - 0.00000000000000000000004341 107.0
DYD3_k127_4630735_5 Cro/C1-type HTH DNA-binding domain - - - 0.0000000000000000004075 95.0
DYD3_k127_4630735_6 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.000000000000005312 85.0
DYD3_k127_4636252_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 1.505e-260 817.0
DYD3_k127_4636252_1 DNA topological change K03168 - 5.99.1.2 1.369e-216 701.0
DYD3_k127_4636252_10 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000008634 188.0
DYD3_k127_4636252_11 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000001225 181.0
DYD3_k127_4636252_12 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000002096 163.0
DYD3_k127_4636252_13 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000004301 124.0
DYD3_k127_4636252_14 dksA traR - - - 0.000000000000000000000003938 106.0
DYD3_k127_4636252_15 Endoribonuclease L-PSP - - - 0.00000000000000000001446 97.0
DYD3_k127_4636252_16 translation initiation factor activity K06996 - - 0.0000000000000000123 87.0
DYD3_k127_4636252_17 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K01607 - 4.1.1.44 0.0000000000107 74.0
DYD3_k127_4636252_18 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.000000000068 68.0
DYD3_k127_4636252_19 - - - - 0.00000006636 64.0
DYD3_k127_4636252_2 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 422.0
DYD3_k127_4636252_20 reverse transcriptase - - - 0.0001353 49.0
DYD3_k127_4636252_3 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 370.0
DYD3_k127_4636252_4 PFAM aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009951 334.0
DYD3_k127_4636252_5 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001578 280.0
DYD3_k127_4636252_6 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000484 276.0
DYD3_k127_4636252_7 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000158 261.0
DYD3_k127_4636252_8 PFAM O-methyltransferase K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000008312 245.0
DYD3_k127_4636252_9 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000009241 231.0
DYD3_k127_4637784_0 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 593.0
DYD3_k127_4637784_1 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006858 557.0
DYD3_k127_4637784_10 - - - - 0.000000000000000000000000000000000000000000000000001089 196.0
DYD3_k127_4637784_11 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000008401 177.0
DYD3_k127_4637784_12 translation initiation inhibitor, yjgF family - - - 0.0000000000000000000000000000000000001046 150.0
DYD3_k127_4637784_13 Putative restriction endonuclease - - - 0.0000000000000000000000000000000003767 138.0
DYD3_k127_4637784_14 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000003319 132.0
DYD3_k127_4637784_15 FtsX-like permease family - - - 0.000000000000000000000003739 111.0
DYD3_k127_4637784_16 - - - - 0.000000000000000000000007699 106.0
DYD3_k127_4637784_17 - - - - 0.00000000000000000000006215 103.0
DYD3_k127_4637784_18 Domain of unknown function (DUF5117) - - - 0.000000000000000000001088 99.0
DYD3_k127_4637784_19 - - - - 0.00000000000000000009648 94.0
DYD3_k127_4637784_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 451.0
DYD3_k127_4637784_20 - - - - 0.000000000000000003572 95.0
DYD3_k127_4637784_21 - - - - 0.0000000000000000601 93.0
DYD3_k127_4637784_22 - - - - 0.000000000000001583 89.0
DYD3_k127_4637784_23 AntiSigma factor - - - 0.0000000000003082 81.0
DYD3_k127_4637784_3 nitrite reductase [NAD(P)H] activity K00158,K00363,K03809,K05710 - 1.2.3.3,1.6.5.2,1.7.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 432.0
DYD3_k127_4637784_4 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 445.0
DYD3_k127_4637784_5 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 412.0
DYD3_k127_4637784_6 EamA-like transporter family K15269 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006909 378.0
DYD3_k127_4637784_7 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008607 312.0
DYD3_k127_4637784_8 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003753 261.0
DYD3_k127_4637784_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000004476 233.0
DYD3_k127_463788_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 3.298e-254 803.0
DYD3_k127_463788_1 TIGRFAM penicillin-binding protein, 1A K05366 - 2.4.1.129,3.4.16.4 3.031e-209 678.0
DYD3_k127_463788_10 Sigma factor PP2C-like phosphatases K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000009879 203.0
DYD3_k127_463788_11 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000007785 183.0
DYD3_k127_463788_12 mRNA catabolic process - - - 0.00000000000000000000000000000000005262 141.0
DYD3_k127_463788_13 Competence protein - - - 0.000000000000000000000000000001782 131.0
DYD3_k127_463788_14 50S ribosomal protein L31 K02909 - - 0.000000000000000000000000000007873 120.0
DYD3_k127_463788_15 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000000000000006413 110.0
DYD3_k127_463788_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 477.0
DYD3_k127_463788_3 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 452.0
DYD3_k127_463788_4 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005315 340.0
DYD3_k127_463788_5 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000639 317.0
DYD3_k127_463788_6 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000002308 263.0
DYD3_k127_463788_7 PFAM YicC-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000003775 246.0
DYD3_k127_463788_8 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000001235 213.0
DYD3_k127_463788_9 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000001286 213.0
DYD3_k127_4657649_0 acyl-CoA dehydrogenase K06445 GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016020,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0071944,GO:0072329,GO:1901575 - 4.664e-283 901.0
DYD3_k127_4657649_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007521 438.0
DYD3_k127_4657649_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 382.0
DYD3_k127_468154_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002573 297.0
DYD3_k127_468154_1 Cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009933 297.0
DYD3_k127_468154_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000006814 189.0
DYD3_k127_468154_3 TonB dependent receptor - - - 0.0000000005868 64.0
DYD3_k127_468154_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000009607 47.0
DYD3_k127_468154_5 - - - - 0.00001215 56.0
DYD3_k127_4694491_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 2.65e-282 880.0
DYD3_k127_4694491_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 2.135e-245 760.0
DYD3_k127_4694491_10 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000005019 247.0
DYD3_k127_4694491_11 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000001212 222.0
DYD3_k127_4694491_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000006439 170.0
DYD3_k127_4694491_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000007324 154.0
DYD3_k127_4694491_14 PFAM Preprotein translocase SecG subunit K03075 - - 0.0000000000000000000597 93.0
DYD3_k127_4694491_2 TIGRFAM NADH-quinone oxidoreductase, chain G K00336 - 1.6.5.3 1.832e-235 761.0
DYD3_k127_4694491_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 1.573e-196 620.0
DYD3_k127_4694491_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 481.0
DYD3_k127_4694491_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 306.0
DYD3_k127_4694491_6 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 284.0
DYD3_k127_4694491_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000199 264.0
DYD3_k127_4694491_8 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000232 265.0
DYD3_k127_4694491_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000348 271.0
DYD3_k127_4704119_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1345.0
DYD3_k127_4704119_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 595.0
DYD3_k127_4704119_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 323.0
DYD3_k127_4704119_3 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006572 265.0
DYD3_k127_4704119_4 Proteolipid membrane potential modulator - - - 0.0000000000000000000005592 101.0
DYD3_k127_4704119_5 Protein of unknown function (DUF2892) - - - 0.0000000000000000000007188 99.0
DYD3_k127_4704119_6 Acyl-CoA synthetase (NDP forming) K09181 - - 0.0000000000000000001551 91.0
DYD3_k127_4704119_7 - - - - 0.000000000000000001232 89.0
DYD3_k127_4721196_0 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 3.255e-246 771.0
DYD3_k127_4721196_1 Cytochrome c - - - 1.011e-216 680.0
DYD3_k127_4721196_2 DNA polymerase X family K02347 - - 2.808e-204 652.0
DYD3_k127_4721196_3 Fructose-1,6-bisphosphatase K01622 - 3.1.3.11,4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 535.0
DYD3_k127_4721196_4 divalent heavy-metal cations transporter K07238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 303.0
DYD3_k127_4721196_5 periplasmic or secreted lipoprotein K04065 - - 0.000000000000000000000000000000000000000000000000000007244 196.0
DYD3_k127_4721196_6 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000007542 179.0
DYD3_k127_4721196_7 Helix-hairpin-helix domain K04477 - - 0.0000000000000000000000000000000000000001528 151.0
DYD3_k127_4721196_8 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.00000000000000000000006336 105.0
DYD3_k127_4721196_9 May be involved in the transport of PQQ or its precursor to the periplasm - - - 0.000000006646 60.0
DYD3_k127_4723515_0 G8 - - - 4.796e-244 784.0
DYD3_k127_4723515_1 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K20940 - 1.14.13.218 2.004e-212 667.0
DYD3_k127_4723515_10 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000002028 97.0
DYD3_k127_4723515_11 Toxic component of a toxin-antitoxin (TA) module. An RNase - GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016787,GO:0016788,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0034641,GO:0040008,GO:0043170,GO:0043207,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0045926,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051701,GO:0051704,GO:0051707,GO:0060255,GO:0065007,GO:0071704,GO:0075136,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360,GO:2000112,GO:2000113 - 0.000000000000004696 84.0
DYD3_k127_4723515_12 - - - - 0.000000000002896 75.0
DYD3_k127_4723515_13 - - - - 0.0000000001202 65.0
DYD3_k127_4723515_14 zinc ion binding - - - 0.0000004185 61.0
DYD3_k127_4723515_15 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000004166 59.0
DYD3_k127_4723515_16 Belongs to the RtcB family K14415 - 6.5.1.3 0.00001857 47.0
DYD3_k127_4723515_2 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009226 610.0
DYD3_k127_4723515_3 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 334.0
DYD3_k127_4723515_4 phospholipase Carboxylesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002518 276.0
DYD3_k127_4723515_5 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003393 270.0
DYD3_k127_4723515_6 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002394 258.0
DYD3_k127_4723515_7 peptidase - - - 0.00000000000000000000000000000000000000000000000000000003353 210.0
DYD3_k127_4723515_8 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000001855 208.0
DYD3_k127_4723515_9 - - - - 0.0000000000000000000000000000000000000000000007216 175.0
DYD3_k127_4726753_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 625.0
DYD3_k127_4726753_1 Belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 406.0
DYD3_k127_4726753_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000925 237.0
DYD3_k127_4726753_3 phosphinothricin N-acetyltransferase activity K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000005224 201.0
DYD3_k127_4726753_4 Class II Aldolase and Adducin N-terminal domain K10622 - - 0.00000000000000000000000000000000000000000000000002212 184.0
DYD3_k127_4726753_5 - - - - 0.000000000000000000000000000000000000000000005688 172.0
DYD3_k127_4729478_0 Dehydrogenase K00114 - 1.1.2.8 2.078e-195 633.0
DYD3_k127_4729478_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01576,K01652 - 2.2.1.6,4.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 534.0
DYD3_k127_4729478_10 - - - - 0.00000000000000001408 90.0
DYD3_k127_4729478_11 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000009294 91.0
DYD3_k127_4729478_12 - - - - 0.000000000000003742 86.0
DYD3_k127_4729478_13 Cytochrome c K17760 - 1.1.9.1 0.000000000004853 74.0
DYD3_k127_4729478_14 ATP-binding region, ATPase domain protein - - - 0.00000001063 63.0
DYD3_k127_4729478_2 Cupin domain K00450 - 1.13.11.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 355.0
DYD3_k127_4729478_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001351 264.0
DYD3_k127_4729478_4 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003174 254.0
DYD3_k127_4729478_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000002522 237.0
DYD3_k127_4729478_6 - K06148 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702 - 0.000000000000000000000000000000000181 140.0
DYD3_k127_4729478_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000006805 124.0
DYD3_k127_4729478_8 PFAM Peptidoglycan-binding domain 1 protein K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000001482 109.0
DYD3_k127_4729478_9 - - - - 0.00000000000000000002499 98.0
DYD3_k127_4735350_0 TonB dependent receptor K16091 GO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0008150,GO:0008324,GO:0009279,GO:0015075,GO:0015091,GO:0015318,GO:0015682,GO:0016020,GO:0019867,GO:0022857,GO:0022890,GO:0030001,GO:0030312,GO:0030313,GO:0031975,GO:0034220,GO:0034755,GO:0044462,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072510,GO:0072512,GO:0098655,GO:0098660,GO:0098662 - 7.977e-216 691.0
DYD3_k127_4735350_1 Tryptophan halogenase K14266 - 1.14.19.9 9.338e-196 625.0
DYD3_k127_4735350_10 asparagine synthase - - - 0.0000000000000000000000000000000000000000000000001285 197.0
DYD3_k127_4735350_11 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.0000000000000000000000000000000000000000002157 164.0
DYD3_k127_4735350_12 - - - - 0.000000000000000000000000000000000000001027 163.0
DYD3_k127_4735350_13 electron transfer activity K00428 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.5 0.000000000000000000000000000000000000002324 162.0
DYD3_k127_4735350_14 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000005475 111.0
DYD3_k127_4735350_15 - - - - 0.00000000000000000000786 102.0
DYD3_k127_4735350_16 - - - - 0.00000000000000002071 93.0
DYD3_k127_4735350_17 Outer membrane receptor proteins mostly Fe transport K02014 - - 0.00000000000000006511 84.0
DYD3_k127_4735350_18 - - - - 0.000000616 62.0
DYD3_k127_4735350_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 570.0
DYD3_k127_4735350_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 579.0
DYD3_k127_4735350_4 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000913 542.0
DYD3_k127_4735350_5 Outer membrane receptor proteins mostly Fe transport K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008517 431.0
DYD3_k127_4735350_6 iron-regulated membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 378.0
DYD3_k127_4735350_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000253 274.0
DYD3_k127_4735350_8 asparagine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001369 259.0
DYD3_k127_4735350_9 Protein of unknown function (DUF938) - - - 0.000000000000000000000000000000000000000000000000000000000000003033 223.0
DYD3_k127_4736695_0 PFAM PrkA AAA K07180 - - 3.377e-307 953.0
DYD3_k127_4736695_1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K15022 - 1.17.1.10 8.071e-284 884.0
DYD3_k127_4736695_2 pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 2.231e-260 814.0
DYD3_k127_4736695_3 SpoVR like protein K06415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 537.0
DYD3_k127_4736695_4 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 471.0
DYD3_k127_4736695_5 Protein of unknown function (DUF444) K09786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 413.0
DYD3_k127_4736695_6 Reprolysin (M12B) family zinc metalloprotease - - - 0.00000000000000000000000000000000001412 155.0
DYD3_k127_4736695_7 - - - - 0.000000008067 68.0
DYD3_k127_4736695_8 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000102 58.0
DYD3_k127_4774464_0 TonB dependent receptor K16089 - - 1.294e-244 774.0
DYD3_k127_4774464_1 Glycosyl hydrolases family 15 - - - 2.663e-233 748.0
DYD3_k127_4774464_2 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 479.0
DYD3_k127_4774464_3 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008908 286.0
DYD3_k127_4774464_4 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000000000000000000000001503 205.0
DYD3_k127_477811_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1700.0
DYD3_k127_477811_1 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 2.029e-297 936.0
DYD3_k127_477811_10 Biotin-lipoyl like K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 351.0
DYD3_k127_477811_11 Copper resistance K07233 - - 0.00000000000000000000000000000000000000000000000000000000000000000001935 241.0
DYD3_k127_477811_12 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000000000000000694 228.0
DYD3_k127_477811_13 metal-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000001606 210.0
DYD3_k127_477811_14 helix_turn_helix, mercury resistance K19591 - - 0.0000000000000000000000000000000000000000000009306 168.0
DYD3_k127_477811_15 COG3473, Maleate cis-trans isomerase K01799,K06033 - 4.1.1.76,5.2.1.1 0.00000000000000000000000000000000000000000004864 172.0
DYD3_k127_477811_16 - - - - 0.000000000000000000000000000000000003301 144.0
DYD3_k127_477811_17 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.00000000000000000000000000003355 123.0
DYD3_k127_477811_18 - - - - 0.00000000000000000000003512 106.0
DYD3_k127_477811_19 transcriptional - - - 0.000000000000000000003302 98.0
DYD3_k127_477811_2 Multi-copper - - - 8.107e-245 773.0
DYD3_k127_477811_20 Protein of unknown function (DUF1090) - - - 0.000000005757 63.0
DYD3_k127_477811_21 Protein of unknown function (DUF2933) - - - 0.00000005216 61.0
DYD3_k127_477811_22 - - - - 0.0000002025 60.0
DYD3_k127_477811_23 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.0000005975 61.0
DYD3_k127_477811_24 - - - - 0.00001261 54.0
DYD3_k127_477811_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 562.0
DYD3_k127_477811_4 ABC-2 family transporter protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 460.0
DYD3_k127_477811_5 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 456.0
DYD3_k127_477811_6 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 447.0
DYD3_k127_477811_7 ABC-2 family transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 420.0
DYD3_k127_477811_8 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 415.0
DYD3_k127_477811_9 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 347.0
DYD3_k127_4791863_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 4.463e-249 773.0
DYD3_k127_4791863_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 608.0
DYD3_k127_4791863_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 377.0
DYD3_k127_4791863_3 Membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000685 344.0
DYD3_k127_4791863_4 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000001163 207.0
DYD3_k127_4791863_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000124 145.0
DYD3_k127_4799964_0 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000705 428.0
DYD3_k127_4799964_1 PQQ-like domain K00114,K17760 - 1.1.2.8,1.1.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 390.0
DYD3_k127_4799964_10 - - - - 0.00000000000000000000000000002211 128.0
DYD3_k127_4799964_11 RNA polymerase K03088 - - 0.00000000005575 74.0
DYD3_k127_4799964_12 - - - - 0.000000000385 69.0
DYD3_k127_4799964_2 HupE / UreJ protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001487 288.0
DYD3_k127_4799964_3 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003212 261.0
DYD3_k127_4799964_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000002547 246.0
DYD3_k127_4799964_5 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000004914 211.0
DYD3_k127_4799964_6 PFAM Uncharacterised protein family UPF0157 - - - 0.000000000000000000000000000000000000000000000000000004608 196.0
DYD3_k127_4799964_7 PPIC-type PPIASE domain - - - 0.00000000000000000000000000000000000000000000002271 182.0
DYD3_k127_4799964_8 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000003782 173.0
DYD3_k127_4799964_9 CitB domain protein K13795 - - 0.000000000000000000000000000000000000000000001094 183.0
DYD3_k127_4816664_0 Putative methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 499.0
DYD3_k127_4816664_1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 435.0
DYD3_k127_4816664_10 HEAT repeats - - - 0.0002321 53.0
DYD3_k127_4816664_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 310.0
DYD3_k127_4816664_3 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 305.0
DYD3_k127_4816664_4 NnrU protein K21310 - 2.1.1.334 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000511 278.0
DYD3_k127_4816664_5 BlaR1 peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000001137 214.0
DYD3_k127_4816664_6 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.000000000000000000000000000000000000000000000003298 184.0
DYD3_k127_4816664_7 Penicillinase repressor - - - 0.00000000000000000000000000000000001836 142.0
DYD3_k127_4816664_8 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000005948 119.0
DYD3_k127_4816664_9 Adenylate cyclase - - - 0.000000000000000001432 99.0
DYD3_k127_4827639_0 Male sterility protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 460.0
DYD3_k127_4827639_1 protein-(glutamine-N5) methyltransferase activity K00543,K16130,K18896,K18897,K21515 - 2.1.1.156,2.1.1.157,2.1.1.209,2.1.1.4 0.00000000002496 74.0
DYD3_k127_4827639_3 HIT domain K02503 - - 0.000005323 51.0
DYD3_k127_4827639_4 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0001678 53.0
DYD3_k127_4829344_0 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 379.0
DYD3_k127_4829344_1 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001613 274.0
DYD3_k127_4829344_2 Ankyrin repeat - - - 0.0000000000000000000000000000000000000000001456 169.0
DYD3_k127_4839902_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 454.0
DYD3_k127_4839902_1 Splits dipeptides with a prolyl residue in the C- terminal position K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 396.0
DYD3_k127_4839902_2 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000002948 157.0
DYD3_k127_4839902_3 Belongs to the GbsR family - - - 0.0000000000000000000000000000000000001017 143.0
DYD3_k127_4839902_4 methyltransferase activity - - - 0.000000000000000000000000000000232 131.0
DYD3_k127_4839902_5 Domain of unknown function (DUF296) K06934 - - 0.00000000000000000002303 102.0
DYD3_k127_4839902_6 protein kinase activity - - - 0.0000000000000000002008 97.0
DYD3_k127_4839902_7 acetylesterase activity - - - 0.00000000000007658 83.0
DYD3_k127_4839902_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000008048 67.0
DYD3_k127_4846716_0 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 490.0
DYD3_k127_4846716_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 437.0
DYD3_k127_4846716_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000005022 187.0
DYD3_k127_4846716_3 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000000009812 179.0
DYD3_k127_4922517_0 FMN binding K00104,K16422 - 1.1.3.15,1.1.3.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 374.0
DYD3_k127_4922517_1 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005735 323.0
DYD3_k127_4922517_2 Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA K00556 GO:0001510,GO:0002128,GO:0002938,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008757,GO:0009020,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360 2.1.1.34 0.00000000000000000000000000000000000000000000000000000001761 205.0
DYD3_k127_4922517_3 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000222 189.0
DYD3_k127_4922517_4 CopC domain K07245,K14166 - - 0.000000000000000489 89.0
DYD3_k127_4922517_5 rRNA methyltransferase - - - 0.0000000000000358 78.0
DYD3_k127_4922517_6 protein, homolog of Cu resistance protein CopC K07156 - - 0.00000000000673 74.0
DYD3_k127_4926007_0 FOG TPR repeat SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 442.0
DYD3_k127_4926007_1 Fibronectin type III domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 330.0
DYD3_k127_4926007_2 TIGRFAM outer membrane autotransporter barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006322 295.0
DYD3_k127_4926007_3 Putative ABC exporter - - - 0.0000001709 61.0
DYD3_k127_4926007_4 Papain-like cysteine protease AvrRpt2 - - - 0.0000007159 60.0
DYD3_k127_495888_0 MacB-like periplasmic core domain - - - 7.353e-228 733.0
DYD3_k127_495888_1 MacB-like periplasmic core domain - - - 5.788e-214 690.0
DYD3_k127_495888_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 559.0
DYD3_k127_495888_3 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005301 288.0
DYD3_k127_4979086_0 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004106 544.0
DYD3_k127_4979086_1 - - - - 0.00000000000000000000000000000000004414 150.0
DYD3_k127_4979086_2 Belongs to the UPF0237 family K07166 - - 0.0000000000000000000000000005297 115.0
DYD3_k127_4979086_3 - - - - 0.0000000000000000000000002602 117.0
DYD3_k127_4979086_4 Putative transposase - - - 0.0004795 50.0
DYD3_k127_500629_0 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005917 397.0
DYD3_k127_500629_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 392.0
DYD3_k127_500629_10 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000005099 54.0
DYD3_k127_500629_2 LysR substrate binding domain K13634 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 341.0
DYD3_k127_500629_3 Belongs to the PAPS reductase family. CysH subfamily K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 317.0
DYD3_k127_500629_4 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002295 313.0
DYD3_k127_500629_5 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002224 282.0
DYD3_k127_500629_6 peroxidase activity K00435 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005184 259.0
DYD3_k127_500629_7 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000009344 178.0
DYD3_k127_500629_8 CAAX protease self-immunity K07052 - - 0.00000000000000000000003989 109.0
DYD3_k127_500629_9 Contains PIN domain - - - 0.00000000000000000000357 98.0
DYD3_k127_5039045_0 PQQ enzyme repeat K00117 - 1.1.5.2 1.384e-200 657.0
DYD3_k127_5039045_1 PQQ-like domain K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 592.0
DYD3_k127_5039045_10 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000001585 183.0
DYD3_k127_5039045_11 - - - - 0.0000000000000000000000000000000000000001269 164.0
DYD3_k127_5039045_13 - - - - 0.0000000000000000000000000000000000000007496 167.0
DYD3_k127_5039045_14 - - - - 0.000000000000000000000000000000000000001862 151.0
DYD3_k127_5039045_15 FAD linked oxidases, C-terminal domain K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 0.00000000000004815 72.0
DYD3_k127_5039045_16 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000002729 74.0
DYD3_k127_5039045_17 Dihydroxyacetone kinase K05878 - 2.7.1.121 0.000004127 48.0
DYD3_k127_5039045_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007864 509.0
DYD3_k127_5039045_3 Carboxylesterase family K03929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 409.0
DYD3_k127_5039045_4 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 302.0
DYD3_k127_5039045_5 Dihydroxyacetone kinase K00863 - 2.7.1.28,2.7.1.29,4.6.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001003 278.0
DYD3_k127_5039045_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009314,GO:0009628,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000101 268.0
DYD3_k127_5039045_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001565 268.0
DYD3_k127_5039045_8 Protein of unknown function (DUF533) - - - 0.00000000000000000000000000000000000000000000000000000000001903 214.0
DYD3_k127_5039045_9 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000003693 207.0
DYD3_k127_5052238_0 PrpF protein K16514 - 5.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 497.0
DYD3_k127_5052238_1 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 459.0
DYD3_k127_5052238_2 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 446.0
DYD3_k127_5052238_3 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005969 300.0
DYD3_k127_5052238_4 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000001326 217.0
DYD3_k127_5052238_5 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.00000000000000000000000000000000000000000000000000009375 199.0
DYD3_k127_5052238_6 PFAM Glycosyl transferase family 2 K20534 - - 0.00000000000000000008638 99.0
DYD3_k127_5052238_7 YjbR - - - 0.0000000000000000866 87.0
DYD3_k127_5052238_8 SnoaL-like domain - - - 0.0000000006067 67.0
DYD3_k127_5109220_0 Dehydrogenase K00117 - 1.1.5.2 1.404e-202 643.0
DYD3_k127_5109220_1 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 421.0
DYD3_k127_5109220_2 Alpha/beta hydrolase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 391.0
DYD3_k127_5109220_3 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002206 265.0
DYD3_k127_5109220_4 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000008805 176.0
DYD3_k127_514249_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006155 444.0
DYD3_k127_514249_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 414.0
DYD3_k127_5158539_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 1.035e-303 955.0
DYD3_k127_5158539_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 5.872e-244 767.0
DYD3_k127_5158539_2 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000000000000953 202.0
DYD3_k127_5158539_3 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000003981 171.0
DYD3_k127_5158539_4 pfam nudix K08310 - 3.6.1.67 0.000000000000000000000000000000000000002859 152.0
DYD3_k127_5158539_5 Cysteine methyltransferase K07443 - - 0.000000000000000000000008127 109.0
DYD3_k127_5158539_6 YCII-related domain - - - 0.0000000000000000000003567 99.0
DYD3_k127_5158539_7 Domain of unknown function (DUF4440) - - - 0.0001278 45.0
DYD3_k127_5172982_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01684 - 4.2.1.6 1.187e-208 660.0
DYD3_k127_5172982_1 Aldehyde dehydrogenase family K13877 - 1.2.1.26 3.051e-204 648.0
DYD3_k127_5172982_2 SMP-30/Gluconolaconase/LRE-like region K01053,K14274 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 493.0
DYD3_k127_5172982_3 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 467.0
DYD3_k127_5172982_4 Sodium Bile acid symporter family K03453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 445.0
DYD3_k127_5172982_5 Fumarylacetoacetate (FAA) hydrolase family K14259 - 4.2.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 374.0
DYD3_k127_5172982_6 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 352.0
DYD3_k127_5172982_8 Cytochrome c K08738 - - 0.000000000000000003337 89.0
DYD3_k127_5212994_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 614.0
DYD3_k127_5212994_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 440.0
DYD3_k127_5212994_2 Histidine kinase K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 321.0
DYD3_k127_5212994_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 292.0
DYD3_k127_5212994_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000003103 227.0
DYD3_k127_5212994_5 COG0642 Signal transduction histidine kinase K02668 - 2.7.13.3 0.0000001124 53.0
DYD3_k127_5212994_6 Oligosaccharyl transferase STT3 subunit K07151 - 2.4.99.18 0.0000007067 62.0
DYD3_k127_5215267_0 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008508 453.0
DYD3_k127_5215267_1 PFAM delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009163 352.0
DYD3_k127_5215267_10 Belongs to the precorrin methyltransferase family K02303,K13542 - 2.1.1.107,4.2.1.75 0.0000003694 62.0
DYD3_k127_5215267_2 carboxylic ester hydrolase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 316.0
DYD3_k127_5215267_3 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000461 263.0
DYD3_k127_5215267_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.000000000000000000000000000000000000000000000000000000003424 210.0
DYD3_k127_5215267_5 Putative FMN-binding domain K07734 - - 0.00000000000000000000000000000000000000000000000000825 186.0
DYD3_k127_5215267_6 signal transduction histidine kinase - - - 0.0000000000000000000000000000000000005059 152.0
DYD3_k127_5215267_7 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000001357 131.0
DYD3_k127_5215267_8 - - - - 0.00000000000000001038 91.0
DYD3_k127_5215267_9 Bacterial protein of unknown function (DUF945) - - - 0.000000007587 68.0
DYD3_k127_5218856_0 response regulator receiver K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 582.0
DYD3_k127_5218856_1 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 441.0
DYD3_k127_5218856_2 HDOD domain - - - 0.00000000000000000000000000000000000000000169 168.0
DYD3_k127_5218856_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07715 GO:0000156,GO:0000160,GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001130,GO:0001150,GO:0001151,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0035556,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060089,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000002066 82.0
DYD3_k127_5252013_0 Oxidoreductase family, NAD-binding Rossmann fold K10219 - 1.1.1.312 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 476.0
DYD3_k127_5252013_1 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 427.0
DYD3_k127_5252013_10 - - - - 0.0000000000002485 81.0
DYD3_k127_5252013_2 Amidohydrolase K10221 - 3.1.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 413.0
DYD3_k127_5252013_3 ABC-type molybdate transport system, permease component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 317.0
DYD3_k127_5252013_4 GTP cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 304.0
DYD3_k127_5252013_5 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 293.0
DYD3_k127_5252013_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001786 264.0
DYD3_k127_5252013_7 XdhC and CoxI family - - - 0.00000000000000000000000000000000000000000000000000000000000001071 228.0
DYD3_k127_5252013_8 Pilin (bacterial filament) K02650,K02655 - - 0.0000000000000000000000000000000000000000000002735 172.0
DYD3_k127_5252013_9 Protocatechuate 4,5-dioxygenase K04100 - 1.13.11.8 0.000000000000000000000000000000000001625 145.0
DYD3_k127_5273135_0 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 601.0
DYD3_k127_5273135_1 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009893 492.0
DYD3_k127_5273135_10 protein conserved in bacteria K09938 - - 0.000000000000000000000000009258 125.0
DYD3_k127_5273135_11 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.000000000000000000006598 100.0
DYD3_k127_5273135_12 Protein of unknown function (DUF3108) - - - 0.00000000000000000004814 99.0
DYD3_k127_5273135_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 426.0
DYD3_k127_5273135_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000001438 258.0
DYD3_k127_5273135_4 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000005479 243.0
DYD3_k127_5273135_5 Formyl transferase K11175 GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000001806 221.0
DYD3_k127_5273135_6 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000009066 205.0
DYD3_k127_5273135_7 Belongs to the DnaA family. HdA subfamily K10763 - - 0.000000000000000000000000000000000001107 156.0
DYD3_k127_5273135_8 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase K08744 - 2.7.8.41 0.00000000000000000000000000000000001747 153.0
DYD3_k127_5273135_9 arsenate reductase K00537 - 1.20.4.1 0.0000000000000000000000000000002388 129.0
DYD3_k127_5296399_0 ribosomal rna small subunit methyltransferase - - - 0.00000000000000000000000000000000001229 143.0
DYD3_k127_5329758_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 310.0
DYD3_k127_5329758_1 Belongs to the SUA5 family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002186 281.0
DYD3_k127_5329758_2 HxlR-like helix-turn-helix - - - 0.00000000000000000000000000000000001143 139.0
DYD3_k127_5329758_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000001245 85.0
DYD3_k127_5329758_4 Belongs to the heat shock protein 70 family - - - 0.00000000000000001621 84.0
DYD3_k127_5329758_5 Cupin domain - - - 0.00000000000002106 78.0
DYD3_k127_5366202_0 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 624.0
DYD3_k127_5366202_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 305.0
DYD3_k127_5366202_2 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000481 189.0
DYD3_k127_537524_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 1.527e-296 932.0
DYD3_k127_537524_1 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 448.0
DYD3_k127_537524_2 gluconolactonase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 398.0
DYD3_k127_537524_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 346.0
DYD3_k127_537524_4 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000000000000000000003558 199.0
DYD3_k127_537524_5 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000003704 140.0
DYD3_k127_537524_6 Gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000005667 58.0
DYD3_k127_5375980_0 AAA ATPase domain - - - 3.389e-275 882.0
DYD3_k127_5375980_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 381.0
DYD3_k127_5375980_2 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 313.0
DYD3_k127_5375980_3 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006797 273.0
DYD3_k127_5375980_4 PFAM Pentapeptide repeats (8 copies) - - - 0.000000007552 67.0
DYD3_k127_5412520_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1932.0
DYD3_k127_5412520_1 Carbohydrate family 9 binding domain-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 311.0
DYD3_k127_5412520_2 COG0500 SAM-dependent methyltransferases - - - 0.000000000000000000000000000000000000000000000000000000002288 210.0
DYD3_k127_5412520_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000005354 209.0
DYD3_k127_5412520_4 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000005604 200.0
DYD3_k127_5426239_0 methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003951 263.0
DYD3_k127_5426239_1 - - - - 0.0000000000000000000000001219 117.0
DYD3_k127_5426239_2 Parallel beta-helix repeats - - - 0.00000000000001081 87.0
DYD3_k127_5435937_0 Ankyrin repeats (many copies) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 331.0
DYD3_k127_5435937_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 280.0
DYD3_k127_5435937_10 COG3547 Transposase and inactivated derivatives - - - 0.0000000002122 66.0
DYD3_k127_5435937_11 CYTH - - - 0.0000002742 54.0
DYD3_k127_5435937_12 CYTH - - - 0.0003215 45.0
DYD3_k127_5435937_13 - - - - 0.0003431 49.0
DYD3_k127_5435937_2 3-Demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000001001 225.0
DYD3_k127_5435937_3 Tryptophan-rich sensory protein K05770 - - 0.00000000000000000000000000000000000000000000000000000000006071 209.0
DYD3_k127_5435937_4 GDP-mannose mannosyl hydrolase activity K03574,K19965 - 3.6.1.55,3.6.1.67 0.000000000000000000000000000000000000000000000000000000000207 207.0
DYD3_k127_5435937_5 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000001793 191.0
DYD3_k127_5435937_6 - - - - 0.000000000000000000000000000000000000000000000001827 190.0
DYD3_k127_5435937_7 NUDIX domain - - - 0.00000000000000000000000000002312 119.0
DYD3_k127_5435937_8 - - - - 0.000000000000006162 81.0
DYD3_k127_5435937_9 Putative prokaryotic signal transducing protein - - - 0.0000000000002135 74.0
DYD3_k127_545150_0 Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 606.0
DYD3_k127_545150_1 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 468.0
DYD3_k127_545150_10 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000001741 204.0
DYD3_k127_545150_11 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000004434 207.0
DYD3_k127_545150_12 Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host K05801 - - 0.00000000000000000000000000000000000000000000000000002625 199.0
DYD3_k127_545150_13 Ankyrin repeats (many copies) - - - 0.0000000004023 72.0
DYD3_k127_545150_2 SAICAR synthetase K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006952 397.0
DYD3_k127_545150_3 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007483 397.0
DYD3_k127_545150_4 ribonuclease BN K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007087 335.0
DYD3_k127_545150_5 Type II secretory pathway component ExeA K02450,K12283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 314.0
DYD3_k127_545150_6 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005805 281.0
DYD3_k127_545150_7 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001176 277.0
DYD3_k127_545150_8 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000005665 237.0
DYD3_k127_545150_9 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000006676 226.0
DYD3_k127_5454409_0 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008045 542.0
DYD3_k127_5454409_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 438.0
DYD3_k127_5454409_10 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006305 258.0
DYD3_k127_5454409_11 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009178 254.0
DYD3_k127_5454409_12 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003636 248.0
DYD3_k127_5454409_13 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000166,GO:0000287,GO:0001882,GO:0001884,GO:0002134,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019103,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0051259,GO:0051260,GO:0055086,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000279 242.0
DYD3_k127_5454409_14 Major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000001471 220.0
DYD3_k127_5454409_15 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000123 214.0
DYD3_k127_5454409_16 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000002038 166.0
DYD3_k127_5454409_17 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000000000006371 128.0
DYD3_k127_5454409_18 Pfam Transposase IS66 - - - 0.000000000000000000000001873 111.0
DYD3_k127_5454409_19 there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc K02913 - - 0.0000000000000000006931 91.0
DYD3_k127_5454409_2 PFAM Fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 386.0
DYD3_k127_5454409_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009487 364.0
DYD3_k127_5454409_4 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0008534,GO:0009987,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 331.0
DYD3_k127_5454409_5 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003684 330.0
DYD3_k127_5454409_6 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 320.0
DYD3_k127_5454409_7 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 294.0
DYD3_k127_5454409_8 Transcriptional regulatory protein, C terminal K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 295.0
DYD3_k127_5454409_9 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 GO:0000287,GO:0003674,GO:0003824,GO:0004588,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002884 270.0
DYD3_k127_5454482_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1141.0
DYD3_k127_5454482_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 513.0
DYD3_k127_5454482_2 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006295 508.0
DYD3_k127_5454482_3 Belongs to the peptidase S1C family K04771,K04772 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005709 380.0
DYD3_k127_5454482_4 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 299.0
DYD3_k127_5454482_5 COG0209 Ribonucleotide reductase, alpha subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 298.0
DYD3_k127_5454482_6 aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001079 294.0
DYD3_k127_5457062_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2170.0
DYD3_k127_5457062_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0 2086.0
DYD3_k127_5457062_10 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000000000000000000001703 112.0
DYD3_k127_5457062_11 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000002099 81.0
DYD3_k127_5457062_12 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000005585 55.0
DYD3_k127_5457062_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.502e-280 878.0
DYD3_k127_5457062_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 334.0
DYD3_k127_5457062_4 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 300.0
DYD3_k127_5457062_5 Ribosomal protein L11/L12 K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000005525 236.0
DYD3_k127_5457062_6 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000007101 220.0
DYD3_k127_5457062_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.00000000000000000000000000000000000000000000000000000000000002003 222.0
DYD3_k127_5457062_8 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000005481 192.0
DYD3_k127_5457062_9 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000007227 152.0
DYD3_k127_5465941_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 5.715e-226 709.0
DYD3_k127_5465941_1 TonB-dependent Receptor Plug - - - 1.017e-204 666.0
DYD3_k127_5465941_10 - - - - 0.00000000000000000000000000000000000000000000000000000155 206.0
DYD3_k127_5465941_11 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000000000000000000008155 183.0
DYD3_k127_5465941_12 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000005929 179.0
DYD3_k127_5465941_13 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.000000000000000000000000000000000000000000001067 179.0
DYD3_k127_5465941_14 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000004176 178.0
DYD3_k127_5465941_15 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000000004984 117.0
DYD3_k127_5465941_16 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000004898 111.0
DYD3_k127_5465941_17 Sulfotransferase domain - - - 0.000000000000000000000001232 115.0
DYD3_k127_5465941_18 Protein of unknown function (DUF2905) - - - 0.0000000000000000386 93.0
DYD3_k127_5465941_19 Sulfotransferase domain - - - 0.000000006545 67.0
DYD3_k127_5465941_2 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 497.0
DYD3_k127_5465941_3 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002507 426.0
DYD3_k127_5465941_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 319.0
DYD3_k127_5465941_5 Histidine kinase K07675 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002331 278.0
DYD3_k127_5465941_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002308 269.0
DYD3_k127_5465941_7 membrane protein TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000003636 237.0
DYD3_k127_5465941_8 PFAM Response regulator receiver domain K07689 - - 0.0000000000000000000000000000000000000000000000000000000000000000147 236.0
DYD3_k127_5465941_9 Thioredoxin K05838 - - 0.0000000000000000000000000000000000000000000000000000007816 201.0
DYD3_k127_5482045_0 4-hydroxyphenylacetate 3-hydroxylase C terminal - - - 1.667e-275 872.0
DYD3_k127_5482045_1 FAD binding domain K05797 - 1.17.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 600.0
DYD3_k127_5482045_2 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 454.0
DYD3_k127_5482045_3 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000005714 211.0
DYD3_k127_5482045_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000002148 100.0
DYD3_k127_5482045_6 Helix-hairpin-helix class 2 (Pol1 family) motifs - - - 0.00000000000002105 75.0
DYD3_k127_5482045_7 helix_turn_helix, Lux Regulon - - - 0.0000003453 61.0
DYD3_k127_551813_0 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K15578 - - 2.808e-237 773.0
DYD3_k127_551813_1 COG0600 ABC-type nitrate sulfonate bicarbonate transport system, permease component K02050,K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008744 451.0
DYD3_k127_551813_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008067 359.0
DYD3_k127_551813_3 NMT1-like family K15576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005011 334.0
DYD3_k127_5525339_0 Aminotransferase class-III K16871 - 2.6.1.96 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 554.0
DYD3_k127_5525339_1 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008244 341.0
DYD3_k127_5525339_2 lactoylglutathione lyase activity K03088 - - 0.000000000000000000000000000000000000000000000000000000000001408 220.0
DYD3_k127_5525339_3 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000001077 168.0
DYD3_k127_5525339_4 - - - - 0.000000000003149 67.0
DYD3_k127_5528491_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 439.0
DYD3_k127_5528491_1 transposition K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 293.0
DYD3_k127_5528491_2 gluconolactonase activity K01053 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000327 240.0
DYD3_k127_5528491_3 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.000000000000000000000000000000001826 135.0
DYD3_k127_5528491_4 Putative restriction endonuclease - - - 0.00000000000000000000000000000002976 139.0
DYD3_k127_5528491_5 Cro/C1-type HTH DNA-binding domain - - - 0.0000000000000000000000001692 109.0
DYD3_k127_5528491_6 Malic enzyme, NAD binding domain K00027,K00029 - 1.1.1.38,1.1.1.40 0.0000000000000000000000003126 108.0
DYD3_k127_5528491_7 - - - - 0.00000000008397 64.0
DYD3_k127_5528491_8 Integrase core domain - - - 0.0000005059 61.0
DYD3_k127_5537489_0 2-methylcitrate dehydratase K01720 - 4.2.1.79 2.562e-218 687.0
DYD3_k127_5537489_1 Short chain fatty acid transporter K02106 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 526.0
DYD3_k127_5537489_10 protein possibly involved in utilization of glycolate and propanediol - - - 0.000000000000000000000000000000000000000000000001545 191.0
DYD3_k127_5537489_11 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000008782 161.0
DYD3_k127_5537489_12 - - - - 0.000000000000000000000000000009217 124.0
DYD3_k127_5537489_13 MAPEG family K00799 - 2.5.1.18 0.00000000000000000000000000003243 122.0
DYD3_k127_5537489_14 ABC-type Na efflux pump, permease component K01992 - - 0.000000000000000000000000002964 127.0
DYD3_k127_5537489_15 - - - - 0.0000000000000000000001112 108.0
DYD3_k127_5537489_17 - - - - 0.000000006405 67.0
DYD3_k127_5537489_18 - - - - 0.00000002007 66.0
DYD3_k127_5537489_2 Dehydrogenase K00117 - 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 410.0
DYD3_k127_5537489_3 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K03417 - 4.1.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005015 396.0
DYD3_k127_5537489_4 beta-keto acid cleavage enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 392.0
DYD3_k127_5537489_5 Cache 3/Cache 2 fusion domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 379.0
DYD3_k127_5537489_6 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 369.0
DYD3_k127_5537489_7 ATPase activity K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007713 271.0
DYD3_k127_5537489_8 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000001 272.0
DYD3_k127_5537489_9 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000001876 265.0
DYD3_k127_5541169_0 MacB-like periplasmic core domain - - - 6.732e-276 870.0
DYD3_k127_5541169_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 514.0
DYD3_k127_5541169_2 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 404.0
DYD3_k127_5541169_3 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 364.0
DYD3_k127_5541169_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000001274 124.0
DYD3_k127_5541169_5 Cro/C1-type HTH DNA-binding domain K07727 - - 0.000000000000000000000000006167 110.0
DYD3_k127_5541169_6 Protein of unknown function (DUF2975) - - - 0.00001312 54.0
DYD3_k127_5541169_7 efflux transmembrane transporter activity - - - 0.0005692 43.0
DYD3_k127_556691_0 Belongs to the cysteine synthase cystathionine beta- synthase family - - - 6.182e-221 695.0
DYD3_k127_556691_1 carboxylic ester hydrolase activity - - - 5.95e-200 659.0
DYD3_k127_556691_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005517 248.0
DYD3_k127_556691_11 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000007112 247.0
DYD3_k127_556691_12 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000005828 228.0
DYD3_k127_556691_13 COG0563 Adenylate kinase and related kinases - - - 0.00000000000000000000000000000000000000000000000000000002143 201.0
DYD3_k127_556691_14 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000001177 193.0
DYD3_k127_556691_15 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000005386 193.0
DYD3_k127_556691_16 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000000000000004069 163.0
DYD3_k127_556691_17 decarboxylase K01607 - 4.1.1.44 0.000000000000000000000000000000000000000002972 165.0
DYD3_k127_556691_18 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767 - 5.2.1.8 0.00000000000000000000000008037 117.0
DYD3_k127_556691_19 Gluconate 2-dehydrogenase subunit 3 K06152 - 1.1.99.3 0.00000000000000000000007562 106.0
DYD3_k127_556691_2 of ABC-type glycine betaine transport system K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 591.0
DYD3_k127_556691_20 - - - - 0.00000000001291 77.0
DYD3_k127_556691_3 GMC oxidoreductase K06151 - 1.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 484.0
DYD3_k127_556691_4 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008659 447.0
DYD3_k127_556691_5 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 438.0
DYD3_k127_556691_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003355 359.0
DYD3_k127_556691_7 mechanosensitive ion channel K16052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000628 340.0
DYD3_k127_556691_8 Major Facilitator K08219 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 317.0
DYD3_k127_556691_9 ATPases associated with a variety of cellular activities K05847 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008748 298.0
DYD3_k127_5585398_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 390.0
DYD3_k127_5585398_1 Involved in the tonB-independent uptake of proteins K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 365.0
DYD3_k127_5585398_2 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000009536 136.0
DYD3_k127_5585398_3 lactoylglutathione lyase activity - - - 0.0000000000000008819 90.0
DYD3_k127_5585398_4 Ankyrin repeats (many copies) - - - 0.000000000000001558 89.0
DYD3_k127_5585398_5 PDZ domain (Also known as DHR or GLGF) - - - 0.0000002204 58.0
DYD3_k127_5590389_0 WD40-like Beta Propeller Repeat - - - 7.48e-236 767.0
DYD3_k127_5590389_1 PRC-barrel domain - - - 0.00000000000000000000000000000000001621 147.0
DYD3_k127_5590389_2 membrane K07278 - - 0.000000000001826 74.0
DYD3_k127_5610121_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1277.0
DYD3_k127_5610121_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 509.0
DYD3_k127_5610121_2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000005629 219.0
DYD3_k127_5618740_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 534.0
DYD3_k127_5618740_1 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000000000000001742 162.0
DYD3_k127_5618740_2 - - - - 0.000000000000000000000000002042 126.0
DYD3_k127_5618740_3 dioxygenase K11159 - - 0.0000000000000000000000001653 106.0
DYD3_k127_5618740_4 - - - - 0.0000000000000000000003071 110.0
DYD3_k127_5618740_5 - - - - 0.0001095 50.0
DYD3_k127_5638712_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1115.0
DYD3_k127_5638712_1 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 6.171e-241 752.0
DYD3_k127_5638712_10 COG1668 ABC-type Na efflux pump, permease component K09696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003775 265.0
DYD3_k127_5638712_11 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002623 251.0
DYD3_k127_5638712_12 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000009758 243.0
DYD3_k127_5638712_13 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000001212 195.0
DYD3_k127_5638712_14 Domain of unknown function (DUF4124) - - - 0.00000000000000000000002307 106.0
DYD3_k127_5638712_15 GGDEF domain - - - 0.00000000000000000000004566 106.0
DYD3_k127_5638712_16 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 GO:0000966,GO:0001682,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904 3.1.26.5 0.0000000000000000007235 93.0
DYD3_k127_5638712_17 Belongs to the bacterial ribosomal protein bL34 family K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000206 79.0
DYD3_k127_5638712_2 Belongs to the class-II aminoacyl-tRNA synthetase family K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.14 2.116e-205 654.0
DYD3_k127_5638712_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 614.0
DYD3_k127_5638712_4 response regulator K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 539.0
DYD3_k127_5638712_5 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 441.0
DYD3_k127_5638712_6 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 410.0
DYD3_k127_5638712_7 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 415.0
DYD3_k127_5638712_8 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 332.0
DYD3_k127_5638712_9 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003872 271.0
DYD3_k127_5674267_0 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000545 487.0
DYD3_k127_5674267_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001354 265.0
DYD3_k127_5674267_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000292 221.0
DYD3_k127_5674267_3 Domain of unknown function (DUF4399) - - - 0.0000000000000000000000000000000000000000004439 162.0
DYD3_k127_5674267_4 NlpC/P60 family - - - 0.00000000000000000000000000000004593 131.0
DYD3_k127_5674267_5 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000002596 91.0
DYD3_k127_5674267_6 belongs to the protein kinase superfamily K20716 - - 0.000000000007511 76.0
DYD3_k127_5674267_7 Squalene--hopene cyclase K06045 - 4.2.1.129,5.4.99.17 0.0005921 45.0
DYD3_k127_567908_0 Dehydrogenase E1 component K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 553.0
DYD3_k127_567908_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 538.0
DYD3_k127_567908_10 Amidase K01426 - 3.5.1.4 0.000000000000000000005705 98.0
DYD3_k127_567908_11 Transcriptional regulatory protein, C terminal - - - 0.00000000000000001909 97.0
DYD3_k127_567908_12 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000004109 53.0
DYD3_k127_567908_2 Membrane protein involved in D-alanine export - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 386.0
DYD3_k127_567908_3 WYL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001847 277.0
DYD3_k127_567908_4 Hemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002213 267.0
DYD3_k127_567908_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000009173 251.0
DYD3_k127_567908_6 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000002817 155.0
DYD3_k127_567908_7 RibD C-terminal domain - - - 0.000000000000000000000000000000001314 142.0
DYD3_k127_567908_8 Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000002761 121.0
DYD3_k127_567908_9 - - - - 0.00000000000000000000000008082 123.0
DYD3_k127_5690667_0 Belongs to the IlvD Edd family - - - 2.366e-212 683.0
DYD3_k127_5690667_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006914 507.0
DYD3_k127_5690667_2 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009599 461.0
DYD3_k127_5690667_3 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 463.0
DYD3_k127_5690667_4 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960,K20810 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050270 3.5.4.28,3.5.4.31,3.5.4.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008849 424.0
DYD3_k127_5690667_5 ATPases associated with a variety of cellular activities K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007667 311.0
DYD3_k127_5690667_6 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 306.0
DYD3_k127_5690667_7 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003609 283.0
DYD3_k127_5690667_8 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002184 259.0
DYD3_k127_5690667_9 Substrate binding domain of ABC-type glycine betaine transport system K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000005201 247.0
DYD3_k127_5701868_0 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor domain K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 401.0
DYD3_k127_5701868_1 transcription factor binding K15836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 368.0
DYD3_k127_5701868_2 endonuclease activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001111 268.0
DYD3_k127_5701868_3 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000003722 171.0
DYD3_k127_5701868_4 acetylesterase activity - - - 0.000000000000000000000000000000000005617 150.0
DYD3_k127_5701868_5 DoxX K15977 - - 0.00000000000000000000000000000001415 133.0
DYD3_k127_5701868_6 sequence-specific DNA binding K07729 - - 0.0000000000000000001402 98.0
DYD3_k127_5701868_7 TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000923 100.0
DYD3_k127_5701868_8 - - - - 0.00000000461 63.0
DYD3_k127_5701868_9 Putative DNA-binding domain - - - 0.000004131 53.0
DYD3_k127_5715028_0 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 507.0
DYD3_k127_5715028_1 glycosyl transferase family 2 - - - 0.000000002481 65.0
DYD3_k127_5715028_2 ryanodine-sensitive calcium-release channel activity K04961,K04962,K04963,K17675 GO:0000041,GO:0000166,GO:0001501,GO:0001503,GO:0001508,GO:0001666,GO:0002009,GO:0002020,GO:0002026,GO:0002027,GO:0002682,GO:0003007,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003143,GO:0003151,GO:0003205,GO:0003206,GO:0003208,GO:0003214,GO:0003220,GO:0003229,GO:0003231,GO:0003300,GO:0003674,GO:0005215,GO:0005216,GO:0005217,GO:0005219,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005509,GO:0005513,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0005886,GO:0005887,GO:0005891,GO:0005938,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006828,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007204,GO:0007267,GO:0007275,GO:0007507,GO:0007517,GO:0007519,GO:0007584,GO:0008015,GO:0008016,GO:0008104,GO:0008144,GO:0008150,GO:0008219,GO:0008324,GO:0009410,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009887,GO:0009888,GO:0009889,GO:0009898,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010460,GO:0010468,GO:0010522,GO:0010556,GO:0010644,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010941,GO:0010942,GO:0010959,GO:0012501,GO:0012505,GO:0014070,GO:0014074,GO:0014701,GO:0014706,GO:0014802,GO:0014808,GO:0014823,GO:0014850,GO:0014896,GO:0014897,GO:0014902,GO:0014904,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015278,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016055,GO:0016528,GO:0016529,GO:0017076,GO:0019219,GO:0019222,GO:0019722,GO:0019725,GO:0019897,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0021700,GO:0022607,GO:0022803,GO:0022832,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030154,GO:0030314,GO:0030315,GO:0030509,GO:0030554,GO:0031000,GO:0031090,GO:0031224,GO:0031226,GO:0031234,GO:0031300,GO:0031301,GO:0031323,GO:0031326,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031672,GO:0031674,GO:0031967,GO:0031975,GO:0031984,GO:0032026,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032781,GO:0032879,GO:0032970,GO:0032991,GO:0033017,GO:0033036,GO:0033198,GO:0033365,GO:0034220,GO:0034236,GO:0034237,GO:0034613,GO:0034702,GO:0034703,GO:0034704,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035050,GO:0035206,GO:0035239,GO:0035295,GO:0035556,GO:0035584,GO:0035637,GO:0035639,GO:0035690,GO:0035994,GO:0036094,GO:0036270,GO:0036293,GO:0040011,GO:0042127,GO:0042175,GO:0042221,GO:0042383,GO:0042391,GO:0042493,GO:0042592,GO:0042692,GO:0042802,GO:0042995,GO:0043005,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043270,GO:0043279,GO:0043292,GO:0043462,GO:0043588,GO:0043621,GO:0043924,GO:0043931,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044459,GO:0044464,GO:0045184,GO:0045823,GO:0046683,GO:0046872,GO:0046873,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048644,GO:0048729,GO:0048731,GO:0048738,GO:0048741,GO:0048747,GO:0048763,GO:0048799,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051018,GO:0051049,GO:0051050,GO:0051146,GO:0051171,GO:0051179,GO:0051209,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051259,GO:0051260,GO:0051262,GO:0051270,GO:0051279,GO:0051282,GO:0051283,GO:0051284,GO:0051289,GO:0051336,GO:0051345,GO:0051480,GO:0051481,GO:0051592,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051775,GO:0051924,GO:0051928,GO:0055001,GO:0055002,GO:0055008,GO:0055010,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055117,GO:0060047,GO:0060048,GO:0060070,GO:0060255,GO:0060341,GO:0060348,GO:0060401,GO:0060402,GO:0060415,GO:0060429,GO:0060537,GO:0060538,GO:0060562,GO:0061061,GO:0061337,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070482,GO:0070588,GO:0070727,GO:0070838,GO:0070848,GO:0070887,GO:0070972,GO:0070977,GO:0071241,GO:0071248,GO:0071277,GO:0071286,GO:0071310,GO:0071312,GO:0071313,GO:0071318,GO:0071363,GO:0071407,GO:0071415,GO:0071417,GO:0071421,GO:0071466,GO:0071495,GO:0071496,GO:0071695,GO:0071772,GO:0071773,GO:0071840,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071871,GO:0071872,GO:0071944,GO:0072347,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072594,GO:0072599,GO:0080090,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086019,GO:0086029,GO:0086064,GO:0086065,GO:0086068,GO:0090257,GO:0097050,GO:0097110,GO:0097159,GO:0097367,GO:0097458,GO:0097553,GO:0098552,GO:0098562,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098735,GO:0098771,GO:0098796,GO:0098797,GO:0098827,GO:0098900,GO:0098901,GO:0098904,GO:0098907,GO:0098910,GO:0098911,GO:0099080,GO:0099081,GO:0099094,GO:0099512,GO:0099568,GO:0099604,GO:0120025,GO:0198738,GO:1901019,GO:1901021,GO:1901265,GO:1901363,GO:1901681,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901894,GO:1901896,GO:1902495,GO:1903115,GO:1903169,GO:1903506,GO:1903514,GO:1903522,GO:1903524,GO:1903779,GO:1904019,GO:1904062,GO:1904064,GO:1904427,GO:1905114,GO:1990351,GO:1990425,GO:2000112,GO:2001141 3.6.4.13 0.000008236 59.0
DYD3_k127_5715028_3 helix_turn_helix, Lux Regulon - - - 0.00001801 51.0
DYD3_k127_5747359_0 Protein of unknown function (DUF1587) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 601.0
DYD3_k127_5747359_1 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 427.0
DYD3_k127_5747359_2 ankyrin repeat K15503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 419.0
DYD3_k127_5747359_3 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000008443 201.0
DYD3_k127_5747359_4 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.0000000003885 64.0
DYD3_k127_5751032_0 G8 - - - 0.00000000000000000000000000000000000000000000000000000000000002863 220.0
DYD3_k127_5768201_0 COG4993 Glucose dehydrogenase - - - 1.806e-218 700.0
DYD3_k127_5768201_1 metal-dependent hydrolase of the TIM-barrel fold K03392,K10220 - 4.1.1.45,4.2.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 538.0
DYD3_k127_5768201_10 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000004914 189.0
DYD3_k127_5768201_11 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000001419 196.0
DYD3_k127_5768201_12 methyltransferase - GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0009273,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016741,GO:0022607,GO:0032259,GO:0042546,GO:0044085,GO:0044464,GO:0071554,GO:0071766,GO:0071770,GO:0071840,GO:0071944 - 0.0000000000000000000000000000000000000000000002889 176.0
DYD3_k127_5768201_13 Sulfotransferase domain - - - 0.000000000000000000000000000000000000000000004098 175.0
DYD3_k127_5768201_14 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000001115 181.0
DYD3_k127_5768201_15 - - - - 0.000000000000000000000000001156 124.0
DYD3_k127_5768201_16 Ferric reductase like transmembrane component - - - 0.0000000000000005096 81.0
DYD3_k127_5768201_17 HAD-superfamily phosphatase, subfamily IIIC - - - 0.00000000000001715 87.0
DYD3_k127_5768201_18 polysaccharide deacetylase - - - 0.000000001595 69.0
DYD3_k127_5768201_2 FAD binding domain K03391,K05712 - 1.14.13.127,1.14.13.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 357.0
DYD3_k127_5768201_3 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 334.0
DYD3_k127_5768201_4 cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005897 289.0
DYD3_k127_5768201_5 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006571 281.0
DYD3_k127_5768201_6 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003572 279.0
DYD3_k127_5768201_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001148 267.0
DYD3_k127_5768201_8 Planctomycete cytochrome C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007063 258.0
DYD3_k127_5768201_9 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002132 251.0
DYD3_k127_5780217_0 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 536.0
DYD3_k127_5780217_1 Acyl-CoA dehydrogenase, C-terminal domain K22027 - 1.14.13.235 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007194 277.0
DYD3_k127_5780217_2 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000005162 235.0
DYD3_k127_5780217_3 - - - - 0.0000000000000000000000000000000000000000003237 183.0
DYD3_k127_5780217_4 MacB-like periplasmic core domain - - - 0.000000000000000000005187 100.0
DYD3_k127_5780217_5 - - - - 0.0000004817 59.0
DYD3_k127_5815425_0 transport system, periplasmic component K13893 - - 3.689e-230 735.0
DYD3_k127_5815425_1 Binding-protein-dependent transport system inner membrane component K13895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 482.0
DYD3_k127_5815425_2 transport system, permease component K13894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 476.0
DYD3_k127_5815425_3 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 385.0
DYD3_k127_5815425_4 MOSC domain - - - 0.000000000000000000000000000000000000000000000000000176 193.0
DYD3_k127_5815425_5 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000002988 149.0
DYD3_k127_5815425_6 Oligopeptide/dipeptide transporter, C-terminal region K10823 - - 0.000000000000000000000000000122 115.0
DYD3_k127_5815425_7 Adenylate cyclase - - - 0.00000000000000000000000002156 113.0
DYD3_k127_5836655_0 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 349.0
DYD3_k127_5836655_1 glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 291.0
DYD3_k127_5836655_2 - - - - 0.000000000000000000000001429 109.0
DYD3_k127_5836655_3 - - - - 0.000000004671 67.0
DYD3_k127_5836655_4 - - - - 0.0000000835 63.0
DYD3_k127_5836655_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000001532 61.0
DYD3_k127_5836655_6 Plasmid stability protein K21495 - - 0.000005218 54.0
DYD3_k127_586245_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1182.0
DYD3_k127_586245_1 DNA topological change K03168 - 5.99.1.2 8.18e-229 733.0
DYD3_k127_586245_2 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 612.0
DYD3_k127_586245_3 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 398.0
DYD3_k127_586245_4 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006112 291.0
DYD3_k127_586245_5 Cytochrome c, mono- and diheme variants - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001152 268.0
DYD3_k127_586245_6 GrpB protein - - - 0.0000000000000000000000000000000000000000000000000000000000000005252 229.0
DYD3_k127_586245_7 Acetyltransferase (GNAT) domain K03830 - - 0.0000000000000000000000000000000000002225 149.0
DYD3_k127_586245_8 Tetratricopeptide repeat - - - 0.0000000000000001961 89.0
DYD3_k127_586245_9 - - - - 0.00000000000005456 74.0
DYD3_k127_5865433_0 Dehydratase family K13875 - 4.2.1.25 7.459e-306 944.0
DYD3_k127_5865433_1 alpha-L-arabinofuranosidase domain protein K01209 - 3.2.1.55 9.263e-254 795.0
DYD3_k127_5865433_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000002883 229.0
DYD3_k127_5865433_11 enterobactin catabolic process - - - 0.00000000000000000000000000000000000004216 152.0
DYD3_k127_5865433_12 - - - - 0.00000000000000000000000000000000000007214 150.0
DYD3_k127_5865433_2 arylsulfatase activity K01132 - 3.1.6.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005618 572.0
DYD3_k127_5865433_3 Dihydrodipicolinate synthetase family K13876 - 4.2.1.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 486.0
DYD3_k127_5865433_4 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 475.0
DYD3_k127_5865433_5 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01684 - 4.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009381 443.0
DYD3_k127_5865433_7 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 354.0
DYD3_k127_5865433_8 Glucose / Sorbosone dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 303.0
DYD3_k127_5865433_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003212 266.0
DYD3_k127_5866890_0 Domain of unknown function (DUF5117) - - - 1.494e-231 739.0
DYD3_k127_5866890_1 sequence-specific DNA binding K01239,K02855,K07506,K18199 - 3.2.2.1,4.2.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002676 284.0
DYD3_k127_5866890_2 SnoaL-like domain K06893 - - 0.00000000000000000000000005883 116.0
DYD3_k127_5866890_3 COG0457 FOG TPR repeat - - - 0.0000000000000000005233 96.0
DYD3_k127_5866890_4 Peptidase S9 prolyl oligopeptidase active site domain protein - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000002867 58.0
DYD3_k127_5872788_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0050896,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 421.0
DYD3_k127_5872788_1 Phage integrase, N-terminal SAM-like domain K04763 GO:0000150,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008907,GO:0009009,GO:0009037,GO:0009314,GO:0009628,GO:0009987,GO:0015074,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0071139,GO:0071704,GO:0090304,GO:0140097,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 386.0
DYD3_k127_5872788_10 DoxX K15977 - - 0.0000000000000000000000003836 108.0
DYD3_k127_5872788_11 - - - - 0.00000000008036 68.0
DYD3_k127_5872788_2 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 337.0
DYD3_k127_5872788_3 PFAM Integral membrane protein TerC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 312.0
DYD3_k127_5872788_4 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003432 316.0
DYD3_k127_5872788_5 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.000000000000000000000000000000000000000000000000000000000001183 218.0
DYD3_k127_5872788_6 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000008218 180.0
DYD3_k127_5872788_7 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000009086 164.0
DYD3_k127_5872788_8 amp-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000000002616 149.0
DYD3_k127_5872788_9 DNA-templated transcription, initiation K03088,K03091 - - 0.000000000000000000000000000008555 126.0
DYD3_k127_5945134_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001028 252.0
DYD3_k127_5945134_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000003786 192.0
DYD3_k127_5945134_2 phospholipase Carboxylesterase - - - 0.00000000000000000000000000000000000000007525 164.0
DYD3_k127_5945134_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000059 138.0
DYD3_k127_5945134_4 PFAM toluene tolerance K07323 - - 0.000000000000000001609 95.0
DYD3_k127_5945134_5 EF hand - - - 0.000000738 58.0
DYD3_k127_5945134_6 OmpA-like transmembrane domain - - - 0.0001661 52.0
DYD3_k127_5955650_0 Receptor K02014 - - 3.781e-286 905.0
DYD3_k127_5955650_1 amidase activity K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 3.463e-229 733.0
DYD3_k127_5955650_2 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000000000000000000000000000000000000003062 188.0
DYD3_k127_5955650_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000006376 151.0
DYD3_k127_5955650_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000851 79.0
DYD3_k127_5967348_0 DNA topological change K03168 - 5.99.1.2 3.229e-233 748.0
DYD3_k127_5967348_1 Feruloyl esterase K21105 - 3.1.1.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 555.0
DYD3_k127_5967348_10 long-chain fatty acid transporting porin activity K09806 - - 0.0000000000000000000000000000000000000000000000000000000000002478 227.0
DYD3_k127_5967348_11 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000000000002692 224.0
DYD3_k127_5967348_12 MgtC family K07507 - - 0.0000000000000000000000000000000000000000000002762 173.0
DYD3_k127_5967348_13 iron dependent repressor - - - 0.0000000000000000000000000000000488 132.0
DYD3_k127_5967348_14 - - - - 0.000000000000000000005615 107.0
DYD3_k127_5967348_15 EF-hand domain - - - 0.000000005224 65.0
DYD3_k127_5967348_16 COG0346 Lactoylglutathione lyase and related lyases - - - 0.00000156 60.0
DYD3_k127_5967348_2 Sodium:sulfate symporter transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007977 507.0
DYD3_k127_5967348_3 Lytic murein transglycosylase K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008565 506.0
DYD3_k127_5967348_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006276 479.0
DYD3_k127_5967348_5 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 421.0
DYD3_k127_5967348_6 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 394.0
DYD3_k127_5967348_7 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005431 273.0
DYD3_k127_5967348_8 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000819 264.0
DYD3_k127_5967348_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004955 248.0
DYD3_k127_5973021_0 Molecular chaperone. Has ATPase activity K04079 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006974,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0033554,GO:0042623,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716 - 3.372e-220 699.0
DYD3_k127_5973021_1 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 594.0
DYD3_k127_5973021_10 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000256 258.0
DYD3_k127_5973021_11 Lipid A biosynthesis K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000004679 235.0
DYD3_k127_5973021_12 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000001873 229.0
DYD3_k127_5973021_13 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.00000000000000000000000000000000000000000000000000001327 197.0
DYD3_k127_5973021_14 PFAM L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000006665 169.0
DYD3_k127_5973021_15 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000001201 166.0
DYD3_k127_5973021_16 Serine aminopeptidase, S33 K07018 - - 0.0000000000000000000000000000000000000000003018 175.0
DYD3_k127_5973021_17 YGGT family K02221 - - 0.00000000000000000000000000000000000165 148.0
DYD3_k127_5973021_18 Domain of unknown function (DUF4426) - - - 0.00000000000000000000000000000266 127.0
DYD3_k127_5973021_19 TIGRFAM Pilus retraction protein PilT K02669 - - 0.0000000000000000000000000000157 118.0
DYD3_k127_5973021_2 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000247 465.0
DYD3_k127_5973021_20 protein conserved in bacteria - - - 0.0000000000000000000000003236 113.0
DYD3_k127_5973021_21 protein conserved in bacteria - - - 0.000000000000000000000282 98.0
DYD3_k127_5973021_22 Peptidase family M48 K03799 - - 0.0000006536 54.0
DYD3_k127_5973021_3 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 GO:0000166,GO:0000271,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008712,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0033692,GO:0034637,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0048037,GO:0050661,GO:0050662,GO:0070401,GO:0071704,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901576,GO:1903509 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 394.0
DYD3_k127_5973021_4 heptosyltransferase K02843 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008419 340.0
DYD3_k127_5973021_5 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 289.0
DYD3_k127_5973021_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003306 277.0
DYD3_k127_5973021_7 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003616 250.0
DYD3_k127_5973021_8 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001009 261.0
DYD3_k127_5973021_9 Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (lauroyl)-lipid IV(A) K02517,K12974 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006082,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008951,GO:0009058,GO:0009245,GO:0009247,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016020,GO:0016051,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0036103,GO:0036104,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046467,GO:0046493,GO:0050896,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.241,2.3.1.242 0.00000000000000000000000000000000000000000000000000000000000000000002291 243.0
DYD3_k127_6027353_0 PQQ-like domain K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004585 342.0
DYD3_k127_6027353_1 Lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 340.0
DYD3_k127_6027353_2 InterPro IPR010496 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 292.0
DYD3_k127_6027353_3 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000132 198.0
DYD3_k127_6027353_4 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000000000000000001706 155.0
DYD3_k127_6027353_5 extracellular solute-binding protein, family 1 K22003 - 5.3.3.7 0.0000000000000000000000000000008477 134.0
DYD3_k127_6057166_0 AAA domain - - - 4.539e-251 799.0
DYD3_k127_6057166_1 Nicotinate phosphoribosyltransferase (NAPRTase) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009863 496.0
DYD3_k127_6057166_10 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000002392 154.0
DYD3_k127_6057166_11 Nitroreductase family - - - 0.000000000000000001936 90.0
DYD3_k127_6057166_12 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 - 6.5.1.4 0.000000000000003755 78.0
DYD3_k127_6057166_13 response to stress - - - 0.0000000007329 69.0
DYD3_k127_6057166_14 Mur ligase family, glutamate ligase domain - - - 0.0006387 51.0
DYD3_k127_6057166_2 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 415.0
DYD3_k127_6057166_3 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 319.0
DYD3_k127_6057166_4 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002656 288.0
DYD3_k127_6057166_5 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 GO:0003674,GO:0003824,GO:0003963,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009975,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016886,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:1901360 6.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005797 282.0
DYD3_k127_6057166_6 PFAM isochorismatase hydrolase K08281 - 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000001531 276.0
DYD3_k127_6057166_7 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000000000000000000000002633 209.0
DYD3_k127_6057166_8 Helix-hairpin-helix domain K04477 - - 0.000000000000000000000000000000000000000002371 168.0
DYD3_k127_6057166_9 Uncharacterized conserved protein (DUF2267) - - - 0.000000000000000000000000000000000000000006096 158.0
DYD3_k127_6061578_0 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 461.0
DYD3_k127_6063902_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 531.0
DYD3_k127_6063902_1 Di-haem oxidoreductase, putative peroxidase K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 490.0
DYD3_k127_6063902_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001792 284.0
DYD3_k127_6063902_3 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000004657 196.0
DYD3_k127_6063902_4 ATP-dependent helicase activity - - - 0.000000000000000000000000000000000000000000001377 182.0
DYD3_k127_6065403_0 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 - 1.3.99.16 5.01e-225 720.0
DYD3_k127_6065403_1 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000007533 230.0
DYD3_k127_6065403_2 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000000000004578 200.0
DYD3_k127_6065403_3 Cupin domain - - - 0.000000000000000000000000000000000001338 145.0
DYD3_k127_6065403_4 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000003119 125.0
DYD3_k127_6065403_6 SnoaL-like domain - - - 0.00000000000000000000448 108.0
DYD3_k127_6065403_7 decarboxylase K01607 - 4.1.1.44 0.0000000000000000004382 98.0
DYD3_k127_6072179_0 'PFAM Alpha amylase, catalytic K00690 GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006066,GO:0006073,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016757,GO:0019400,GO:0019751,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0051472,GO:0071704,GO:1901615 2.4.1.7 5.564e-196 642.0
DYD3_k127_6072179_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 442.0
DYD3_k127_6072179_2 Dehydrogenase K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007383 315.0
DYD3_k127_6072179_3 transcriptional - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006939 288.0
DYD3_k127_6072179_4 PFAM Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007665 284.0
DYD3_k127_6072179_5 phospholipase Carboxylesterase - - - 0.000000000000000003167 90.0
DYD3_k127_6073544_0 Concanavalin A-like lectin/glucanases superfamily - - - 4.703e-267 847.0
DYD3_k127_6073544_1 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 1.778e-245 790.0
DYD3_k127_6073544_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 592.0
DYD3_k127_6073544_3 Protein of unknown function (DUF3570) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005484 454.0
DYD3_k127_6073544_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 419.0
DYD3_k127_6073544_5 SH3 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001784 248.0
DYD3_k127_6073544_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000000000000000003544 230.0
DYD3_k127_6073544_7 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000006327 190.0
DYD3_k127_6073544_9 Domain of unknown function (DUF4266) - - - 0.000000000000000000001021 104.0
DYD3_k127_6088310_0 ABC transporter transmembrane region K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 6.8e-243 765.0
DYD3_k127_6088310_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 569.0
DYD3_k127_6088310_2 Asparagine synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007291 456.0
DYD3_k127_6088310_3 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007314 449.0
DYD3_k127_6088310_4 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 364.0
DYD3_k127_6088310_5 Methyltransferase FkbM domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000258 285.0
DYD3_k127_6088310_6 Glycosyl Transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001269 263.0
DYD3_k127_6088310_7 Major facilitator superfamily K07552 - - 0.0000000000000000000003964 103.0
DYD3_k127_6088310_8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000000000002274 90.0
DYD3_k127_6088310_9 - - - - 0.000001428 55.0
DYD3_k127_6090089_0 PQQ enzyme repeat - - - 2.408e-223 711.0
DYD3_k127_6090089_1 hydrolases or acyltransferases, alpha beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009367 571.0
DYD3_k127_6090089_10 Fumarylacetoacetate FAA hydrolase K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 347.0
DYD3_k127_6090089_11 Gluconolactonase K14274 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 321.0
DYD3_k127_6090089_12 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001088 286.0
DYD3_k127_6090089_13 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000002727 228.0
DYD3_k127_6090089_14 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000006626 215.0
DYD3_k127_6090089_15 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000007697 222.0
DYD3_k127_6090089_17 regulatory protein GntR HTH - - - 0.0000000000000000000000000000000000000000000003782 173.0
DYD3_k127_6090089_18 - - - - 0.000000000000000000000000000000000000000001091 176.0
DYD3_k127_6090089_19 - - - - 0.0000000000000000000000000000000002406 136.0
DYD3_k127_6090089_2 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 524.0
DYD3_k127_6090089_20 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000375 142.0
DYD3_k127_6090089_21 SnoaL-like domain - - - 0.000000004494 66.0
DYD3_k127_6090089_22 SlyX K03745 - - 0.00003947 48.0
DYD3_k127_6090089_3 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006154 501.0
DYD3_k127_6090089_4 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008459 485.0
DYD3_k127_6090089_5 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 513.0
DYD3_k127_6090089_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 435.0
DYD3_k127_6090089_7 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 424.0
DYD3_k127_6090089_8 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005464 396.0
DYD3_k127_6090089_9 dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 340.0
DYD3_k127_6093646_0 PQQ enzyme repeat - - - 1.006e-194 626.0
DYD3_k127_6093646_1 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008722 573.0
DYD3_k127_6093646_2 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 401.0
DYD3_k127_6093646_3 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 337.0
DYD3_k127_6093646_4 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 350.0
DYD3_k127_6093646_5 ankyrin repeat K15503 - - 0.0000000000000000000000000000000000000000000000000000000000001589 240.0
DYD3_k127_6093646_6 lactoylglutathione lyase activity K03088 - - 0.000000000000000000000000000000000000000003035 166.0
DYD3_k127_6093646_7 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000007799 131.0
DYD3_k127_6093646_8 Amidohydrolase family - - - 0.00000000000000000000000000008686 131.0
DYD3_k127_6095161_0 Diguanylate cyclase - - - 1.861e-199 651.0
DYD3_k127_6095161_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 370.0
DYD3_k127_6095161_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007232 317.0
DYD3_k127_6095161_3 Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis K03683 GO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0031123,GO:0034470,GO:0034641,GO:0034660,GO:0042780,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004042 283.0
DYD3_k127_6095161_4 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000007481 223.0
DYD3_k127_6095161_5 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.0000000000000000000000000000000000000000001823 162.0
DYD3_k127_6095161_6 - - - - 0.000000000000000000000000000000000000000011 164.0
DYD3_k127_6108461_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1171.0
DYD3_k127_6108461_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 415.0
DYD3_k127_6108461_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 GO:0001510,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004808,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016782,GO:0016783,GO:0030488,GO:0032259,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 400.0
DYD3_k127_6108461_3 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008165 339.0
DYD3_k127_6108461_4 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.00000000000000000000000000000000000000000002885 167.0
DYD3_k127_6108461_5 protein acetylation - - - 0.0000000001426 68.0
DYD3_k127_6110123_0 Major facilitator superfamily - - - 1.378e-210 661.0
DYD3_k127_6110123_1 Protein of unknown function (DUF3187) - - - 0.000000000000000000000000000000000000000000007442 176.0
DYD3_k127_6110123_2 - - - - 0.000000000000000000000000000008646 123.0
DYD3_k127_6110123_3 - - - - 0.0000000000000000000000157 111.0
DYD3_k127_6110123_4 cytochrome K08738 - - 0.00000000000000000002712 92.0
DYD3_k127_6110123_5 Domain of unknown function (DUF4397) - - - 0.00000001241 67.0
DYD3_k127_6110123_6 - - - - 0.00000009001 62.0
DYD3_k127_6110123_7 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0001233 46.0
DYD3_k127_6158694_0 PFAM biotin lipoyl attachment domain-containing protein K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 515.0
DYD3_k127_6158694_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007572 336.0
DYD3_k127_6158694_2 Protein of unknown function (DUF1810) - - - 0.00000000000000000000000000000000000000000000000000000000009114 221.0
DYD3_k127_6158694_3 - - - - 0.0000000000000000000000000000000000000000000000000008347 188.0
DYD3_k127_6158694_4 Part of a membrane complex involved in electron transport K03613 - - 0.000000000000000000000000000000000000000000000003883 181.0
DYD3_k127_6158694_5 methyltransferase - - - 0.00000000000000000000000000000000000000000004697 169.0
DYD3_k127_6158694_6 - - - - 0.000000000000000000000000000000000000000209 164.0
DYD3_k127_6158694_7 Part of a membrane complex involved in electron transport K03612 - - 0.0000000000000000000000002071 108.0
DYD3_k127_6167967_0 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006245 476.0
DYD3_k127_6167967_1 Reductase C-terminal K00529 - 1.18.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008507 428.0
DYD3_k127_6167967_10 Phage shock protein B K03970 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000002376 66.0
DYD3_k127_6167967_2 sensor diguanylate cyclase phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 433.0
DYD3_k127_6167967_3 Sigma-54 interaction domain K03974 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009608 378.0
DYD3_k127_6167967_4 alpha/beta hydrolase fold K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004485 326.0
DYD3_k127_6167967_5 NADPH quinone K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008852 296.0
DYD3_k127_6167967_6 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription K03969 GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0008289,GO:0009266,GO:0009271,GO:0009408,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009889,GO:0009898,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019897,GO:0019898,GO:0031234,GO:0031323,GO:0031326,GO:0042802,GO:0043167,GO:0043168,GO:0043207,GO:0043433,GO:0044092,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051171,GO:0051252,GO:0051704,GO:0051707,GO:0060187,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098552,GO:0098562,GO:0098586,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000199 240.0
DYD3_k127_6167967_7 PspC domain - - - 0.0000000000000000001388 97.0
DYD3_k127_6167967_8 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000003665 87.0
DYD3_k127_6167967_9 Protein of unknown function (DUF2845) - - - 0.000000000004222 74.0
DYD3_k127_6199637_0 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 555.0
DYD3_k127_6199637_1 MmgE/PrpD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 531.0
DYD3_k127_6199637_10 - - - - 0.0000000000000000000000003437 119.0
DYD3_k127_6199637_11 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.0000000000000000000000236 117.0
DYD3_k127_6199637_12 - - - - 0.00000000000000000000008099 109.0
DYD3_k127_6199637_13 - - - - 0.00000001112 60.0
DYD3_k127_6199637_2 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 424.0
DYD3_k127_6199637_3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 376.0
DYD3_k127_6199637_4 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 368.0
DYD3_k127_6199637_5 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006656 362.0
DYD3_k127_6199637_6 PFAM ABC transporter related K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008686 351.0
DYD3_k127_6199637_7 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 302.0
DYD3_k127_6199637_8 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000004672 216.0
DYD3_k127_6199637_9 response to abiotic stimulus K06867 - - 0.0000000000000000000000000000000000000002657 171.0
DYD3_k127_622677_0 filamentation induced by cAMP protein Fic - - - 2.288e-201 632.0
DYD3_k127_622677_1 InterPro IPR007367 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003352 247.0
DYD3_k127_622677_10 TIGRFAM addiction module toxin, RelE StbE family - - - 0.0005123 43.0
DYD3_k127_622677_2 HD domain K01139 - 2.7.6.5,3.1.7.2 0.000000000000000000000000000000000000000000000000000000001372 205.0
DYD3_k127_622677_3 - - - - 0.0000000000000001934 84.0
DYD3_k127_622677_4 - - - - 0.0000000000000003426 87.0
DYD3_k127_622677_5 - - - - 0.0000000000002032 81.0
DYD3_k127_622677_6 - - - - 0.000000000003279 70.0
DYD3_k127_622677_7 - - - - 0.00000000001028 69.0
DYD3_k127_622677_9 AAA domain - - - 0.0003759 47.0
DYD3_k127_6274159_0 Squalene--hopene cyclase K06045 - 4.2.1.129,5.4.99.17 5.72e-258 808.0
DYD3_k127_6274159_1 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K01761 - 2.5.1.48,4.4.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000005809 263.0
DYD3_k127_6274159_2 Cys/Met metabolism PLP-dependent enzyme K01760,K17217 - 4.4.1.1,4.4.1.2,4.4.1.8 0.000000000000000000000001647 104.0
DYD3_k127_6283840_0 AAA domain - - - 5.479e-254 822.0
DYD3_k127_6283840_1 Dehydrogenase K17760 - 1.1.9.1 7.71e-232 738.0
DYD3_k127_6283840_10 Staphylococcal nuclease homologues K16561 - - 0.000000000000000000000000000000000000000000000000000000000227 211.0
DYD3_k127_6283840_11 MazG-like family - - - 0.0000000000000000000000000000000000000004507 153.0
DYD3_k127_6283840_12 mandelate racemase muconate lactonizing - - - 0.00000000000000000000000000000000002512 155.0
DYD3_k127_6283840_13 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000002386 139.0
DYD3_k127_6283840_14 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000007843 114.0
DYD3_k127_6283840_15 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000004304 114.0
DYD3_k127_6283840_16 - - - - 0.0000000000000002232 91.0
DYD3_k127_6283840_17 Ankyrin repeats (many copies) - - - 0.0000000000000005267 93.0
DYD3_k127_6283840_2 DNA topological change K03168 - 5.99.1.2 5.126e-217 705.0
DYD3_k127_6283840_3 TonB dependent receptor - - - 6.827e-203 673.0
DYD3_k127_6283840_4 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 482.0
DYD3_k127_6283840_5 Domain of unknown function(DUF2779) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 411.0
DYD3_k127_6283840_6 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 376.0
DYD3_k127_6283840_7 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 351.0
DYD3_k127_6283840_8 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 330.0
DYD3_k127_6283840_9 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 316.0
DYD3_k127_6283884_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0 1324.0
DYD3_k127_6283884_1 diguanylate cyclase - - - 3.844e-201 656.0
DYD3_k127_6283884_10 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000002743 99.0
DYD3_k127_6283884_2 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004714 416.0
DYD3_k127_6283884_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 303.0
DYD3_k127_6283884_4 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000002627 212.0
DYD3_k127_6283884_5 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000002796 206.0
DYD3_k127_6283884_6 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000001118 199.0
DYD3_k127_6283884_7 DNA ligase (ATP) activity K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000007124 182.0
DYD3_k127_6283884_8 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000001501 124.0
DYD3_k127_6283884_9 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000000001647 105.0
DYD3_k127_6285026_0 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 1.084e-201 642.0
DYD3_k127_6285026_1 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464 4.1.1.31 1.148e-201 649.0
DYD3_k127_6285026_10 Exodeoxyribonuclease iii K01142 - 3.1.11.2 0.000000000000000003646 86.0
DYD3_k127_6285026_2 cytochrome C peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 480.0
DYD3_k127_6285026_3 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008246 285.0
DYD3_k127_6285026_4 Protein of unknown function (DUF445) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002263 290.0
DYD3_k127_6285026_5 ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001566 273.0
DYD3_k127_6285026_6 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000004626 239.0
DYD3_k127_6285026_7 COG2755 Lysophospholipase L1 and related esterases K10804 - 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000008004 229.0
DYD3_k127_6285026_8 Belongs to the UPF0260 family K09160 - - 0.00000000000000000000000000000000000000000000000000000000008512 207.0
DYD3_k127_6285026_9 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464 4.1.1.31 0.0000000000000000000000000000000000000000000995 168.0
DYD3_k127_6291579_0 DNA topological change K03168 - 5.99.1.2 2.064e-231 759.0
DYD3_k127_6291579_1 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 425.0
DYD3_k127_6291579_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 291.0
DYD3_k127_6291579_3 - - - - 0.000000000000000000000000000001883 141.0
DYD3_k127_6346018_0 Carbamoyl-phosphate synthetase ammonia chain K01955 GO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.0 1570.0
DYD3_k127_6346018_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.212e-298 927.0
DYD3_k127_6346018_2 carbamoyl-phosphate synthetase glutamine chain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005537 541.0
DYD3_k127_6346018_3 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006133 501.0
DYD3_k127_6346018_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 368.0
DYD3_k127_6346018_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000001055 271.0
DYD3_k127_6346018_6 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000002397 228.0
DYD3_k127_6346018_7 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000008214 209.0
DYD3_k127_6347484_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000462 377.0
DYD3_k127_6347484_1 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002654 344.0
DYD3_k127_6347484_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 303.0
DYD3_k127_6347484_3 Transcriptional regulator PadR-like family K10947 - - 0.0000000000000000000000000002445 119.0
DYD3_k127_6347484_4 alpha/beta hydrolase fold - - - 0.0000000000000000000009754 100.0
DYD3_k127_6347484_5 alpha/beta hydrolase fold - - - 0.0000000000000000003871 93.0
DYD3_k127_6349198_0 PFAM Carbamoyltransferase K00612 - - 9.889e-230 726.0
DYD3_k127_6349198_1 Phosphopantetheine attachment site - - - 1.351e-228 778.0
DYD3_k127_6349198_10 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 385.0
DYD3_k127_6349198_11 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 355.0
DYD3_k127_6349198_12 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005139 341.0
DYD3_k127_6349198_13 amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 325.0
DYD3_k127_6349198_14 ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009168 327.0
DYD3_k127_6349198_15 Phosphopantetheine attachment site - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005942 312.0
DYD3_k127_6349198_16 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549 308.0
DYD3_k127_6349198_17 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008051 324.0
DYD3_k127_6349198_18 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 304.0
DYD3_k127_6349198_19 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001221 284.0
DYD3_k127_6349198_2 protein conserved in bacteria - - - 4.843e-225 713.0
DYD3_k127_6349198_20 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000001293 259.0
DYD3_k127_6349198_21 GH3 auxin-responsive promoter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008778 269.0
DYD3_k127_6349198_22 Peptidase M56, BlaR1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004285 255.0
DYD3_k127_6349198_23 Dimerisation domain K09846 - 2.1.1.210 0.00000000000000000000000000000000000000000000000000000000000000000009258 246.0
DYD3_k127_6349198_24 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000002212 217.0
DYD3_k127_6349198_25 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000001058 201.0
DYD3_k127_6349198_26 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000006866 198.0
DYD3_k127_6349198_27 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000000000000009686 173.0
DYD3_k127_6349198_28 Lecithin retinol acyltransferase - - - 0.00000000000000000000000000000000000000000007418 165.0
DYD3_k127_6349198_29 COGs COG0318 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666 - - 0.00000000000000000000000000000000000000005537 169.0
DYD3_k127_6349198_3 fatty-acyl-CoA reductase (alcohol-forming) activity K01897,K12421 - 6.2.1.3 9.904e-213 703.0
DYD3_k127_6349198_30 - - - - 0.00000000000000000000000000000002482 138.0
DYD3_k127_6349198_31 thiolester hydrolase activity - - - 0.000000000000000000000000000003777 130.0
DYD3_k127_6349198_32 TIGRFAM amino acid adenylation domain - - - 0.0000000000000000000000000001973 117.0
DYD3_k127_6349198_33 Bacterial protein of unknown function (DUF899) - - - 0.0000000000000000000000000003894 116.0
DYD3_k127_6349198_34 - - - - 0.0000000000000000000000000008803 124.0
DYD3_k127_6349198_35 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000005552 111.0
DYD3_k127_6349198_36 - - - - 0.000000000000000000000003938 106.0
DYD3_k127_6349198_37 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000009364 113.0
DYD3_k127_6349198_38 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000000000000004209 110.0
DYD3_k127_6349198_39 GHKL domain - - - 0.000000000001183 79.0
DYD3_k127_6349198_4 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 528.0
DYD3_k127_6349198_40 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.0000000002608 68.0
DYD3_k127_6349198_41 histidine kinase A domain protein K07679 - 2.7.13.3 0.000002187 55.0
DYD3_k127_6349198_42 Acyl transferase domain in polyketide synthase (PKS) enzymes. - - - 0.000004761 53.0
DYD3_k127_6349198_43 energy transducer activity K03832 - - 0.00003156 56.0
DYD3_k127_6349198_5 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004392 487.0
DYD3_k127_6349198_6 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 456.0
DYD3_k127_6349198_7 Condensation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 461.0
DYD3_k127_6349198_8 Arylsulfotransferase (ASST) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 445.0
DYD3_k127_6349198_9 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 402.0
DYD3_k127_6371623_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 394.0
DYD3_k127_6371623_1 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 298.0
DYD3_k127_6371623_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000007659 254.0
DYD3_k127_6371623_3 Adenylate cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000006012 271.0
DYD3_k127_6371623_4 - - - - 0.0000000000000000000000000000000000000000005939 171.0
DYD3_k127_6371623_5 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.0000000000000000000000000000000000000002076 154.0
DYD3_k127_6371623_6 - - - - 0.0000000000000000000000000001574 122.0
DYD3_k127_6371623_7 - - - - 0.0000000000000000000000005388 108.0
DYD3_k127_6371623_8 Belongs to the UPF0307 family K09889 - - 0.00000000000000004885 85.0
DYD3_k127_6371623_9 COG1668 ABC-type Na efflux pump, permease component K09696 - - 0.00014 49.0
DYD3_k127_6394457_0 TonB dependent receptor - - - 1.062e-215 691.0
DYD3_k127_6394457_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007555 524.0
DYD3_k127_6394457_10 Ankyrin repeat and SOCS K10323 GO:0000003,GO:0000151,GO:0001817,GO:0001818,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016567,GO:0019222,GO:0019538,GO:0022414,GO:0030539,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0042035,GO:0042036,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046661,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0060255,GO:0061458,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1902494,GO:1990234 - 0.00002564 52.0
DYD3_k127_6394457_11 - - - - 0.00002615 54.0
DYD3_k127_6394457_2 Acts as a magnesium transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008261 476.0
DYD3_k127_6394457_3 MatE K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 407.0
DYD3_k127_6394457_4 PFAM peptidase M48 Ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008639 349.0
DYD3_k127_6394457_5 6-phosphogluconolactonase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001748 256.0
DYD3_k127_6394457_6 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000008957 221.0
DYD3_k127_6394457_7 Acetyltransferase - - - 0.0000000000000000000000000001186 121.0
DYD3_k127_6394457_8 PFAM histidine triad (HIT) protein - - - 0.0000000000000000496 87.0
DYD3_k127_6400220_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1120.0
DYD3_k127_6400220_1 Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine K19696 - 2.4.2.44 0.0000000000000000000000000000000000000000000000000000000001452 219.0
DYD3_k127_6400220_2 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively K00760 - 2.4.2.8 0.0000000000000000000000000000000000000003095 154.0
DYD3_k127_6400220_3 Diguanylate cyclase - - - 0.000000000000008571 86.0
DYD3_k127_6400220_4 Peptidoglycan-binding protein, CsiV - - - 0.0000000000001346 82.0
DYD3_k127_6413559_0 Radical SAM - - - 3.981e-241 764.0
DYD3_k127_6413559_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001465 274.0
DYD3_k127_6413559_10 PFAM cytochrome c, class I K02030 - - 0.0000000004148 69.0
DYD3_k127_6413559_11 - - - - 0.0000144 53.0
DYD3_k127_6413559_12 BlaR1 peptidase M56 - - - 0.0004546 53.0
DYD3_k127_6413559_2 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003873 270.0
DYD3_k127_6413559_3 OsmC-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000144 238.0
DYD3_k127_6413559_4 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000001781 237.0
DYD3_k127_6413559_5 - - - - 0.00000000000000000000000000000000000000000000000000000003396 209.0
DYD3_k127_6413559_6 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.00000000000000000000000000000000000001654 153.0
DYD3_k127_6413559_7 - - - - 0.0000000000000000000000000000000000004769 145.0
DYD3_k127_6413559_8 Penicillinase repressor - - - 0.00000000000000000000000000004849 121.0
DYD3_k127_6415479_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 353.0
DYD3_k127_6415479_1 Pilin (bacterial filament) K02650,K02655 - - 0.00000000000000000000000000000000000782 142.0
DYD3_k127_6415479_2 - - - - 0.0000000001235 70.0
DYD3_k127_6415928_0 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 548.0
DYD3_k127_6415928_1 Sugar (and other) transporter K08195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006158 427.0
DYD3_k127_6415928_10 ABC transporter K02013,K05776 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000002155 198.0
DYD3_k127_6415928_11 nitrogen regulatory protein P-II K04751,K04752 - - 0.00000000000000000000000000000000000000000000000001007 182.0
DYD3_k127_6415928_12 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000000000000000000000000000000000000000000000005978 184.0
DYD3_k127_6415928_13 Bacterial protein of unknown function (Gcw_chp) - - - 0.0000000000000000000000000000000000000000000004452 178.0
DYD3_k127_6415928_14 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000000000009873 160.0
DYD3_k127_6415928_15 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000004276 141.0
DYD3_k127_6415928_16 Diacylglycerol kinase K00901 - 2.7.1.107 0.00000000000000000000000000003511 122.0
DYD3_k127_6415928_17 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.00000000000000000000005592 102.0
DYD3_k127_6415928_18 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000003367 106.0
DYD3_k127_6415928_19 PFAM VanZ - - - 0.00000000000001398 84.0
DYD3_k127_6415928_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 406.0
DYD3_k127_6415928_20 MerC mercury resistance protein - - - 0.0000000000003285 82.0
DYD3_k127_6415928_21 ABC transporter K02003 - - 0.000000001003 61.0
DYD3_k127_6415928_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 395.0
DYD3_k127_6415928_4 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 388.0
DYD3_k127_6415928_5 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005512 363.0
DYD3_k127_6415928_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 327.0
DYD3_k127_6415928_7 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 283.0
DYD3_k127_6415928_8 Inositol monophosphatase family K01092,K18649 - 3.1.3.15,3.1.3.25,3.1.3.93 0.000000000000000000000000000000000000000000000000000000000000000000000006471 251.0
DYD3_k127_6415928_9 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000008552 250.0
DYD3_k127_6417686_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 581.0
DYD3_k127_6417686_1 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 396.0
DYD3_k127_6417686_2 Transporter K06189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 291.0
DYD3_k127_6417686_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000000000008252 197.0
DYD3_k127_6417686_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000002049 168.0
DYD3_k127_6417686_5 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000006441 129.0
DYD3_k127_6417686_6 - - - - 0.000007628 50.0
DYD3_k127_6438438_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1349.0
DYD3_k127_6438438_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 421.0
DYD3_k127_6438438_2 Protein involved in meta-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004871 257.0
DYD3_k127_6438438_3 peptidase C39, bacteriocin processing K06992 - - 0.0000000000000000000000000000000000000000002839 162.0
DYD3_k127_6438438_4 Outer membrane efflux protein K15725 - - 0.000000000000000000000000000000000000000154 154.0
DYD3_k127_6438438_5 - - - - 0.00007133 55.0
DYD3_k127_6440669_0 PFAM Molybdopterin dehydrogenase, FAD-binding K11178 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000328 406.0
DYD3_k127_6440669_1 xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 304.0
DYD3_k127_6440669_2 PDZ DHR GLGF domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006359 288.0
DYD3_k127_6440669_3 2Fe-2S -binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000001882 236.0
DYD3_k127_6440669_4 Cytochrome b - - - 0.0000000000000000000000000000000000000000000000002136 184.0
DYD3_k127_6440669_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000007012 169.0
DYD3_k127_6440669_6 - - - - 0.00000000000000000000000002633 121.0
DYD3_k127_6440669_7 Cytochrome C' - - - 0.000000000000000002768 91.0
DYD3_k127_6463054_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004816 618.0
DYD3_k127_6463054_1 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 405.0
DYD3_k127_6463054_10 Trm112p-like protein - - - 0.0000000000000000000153 93.0
DYD3_k127_6463054_11 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00004461 47.0
DYD3_k127_6463054_2 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003356 385.0
DYD3_k127_6463054_3 DNA polymerase III, delta subunit K02340 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000016 281.0
DYD3_k127_6463054_4 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002767 268.0
DYD3_k127_6463054_5 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000000000000001245 248.0
DYD3_k127_6463054_6 - - - - 0.0000000000000000000000000000000000000000000000000716 183.0
DYD3_k127_6463054_7 PFAM phosphoesterase PA-phosphatase related K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000001749 176.0
DYD3_k127_6463054_8 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000123 145.0
DYD3_k127_6463054_9 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000002009 104.0
DYD3_k127_6473299_0 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 443.0
DYD3_k127_6473299_1 propanoyl-CoA C-acyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 380.0
DYD3_k127_6473299_10 - - - - 0.0000000000000000000000000000000007026 136.0
DYD3_k127_6473299_11 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000001198 130.0
DYD3_k127_6473299_12 Transcriptional regulator - - - 0.00000000000000000000000001586 117.0
DYD3_k127_6473299_13 Major Facilitator Superfamily - - - 0.0000002359 60.0
DYD3_k127_6473299_2 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 297.0
DYD3_k127_6473299_3 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000000000000009331 214.0
DYD3_k127_6473299_4 - - - - 0.00000000000000000000000000000000000000000000000000000000002911 221.0
DYD3_k127_6473299_5 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000007775 220.0
DYD3_k127_6473299_6 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000003486 194.0
DYD3_k127_6473299_7 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.0000000000000000000000000000000000000000000000000001033 196.0
DYD3_k127_6473299_8 Acetyl xylan esterase (AXE1) - - - 0.00000000000000000000000000000000000000000000000001929 192.0
DYD3_k127_6473299_9 Methyltransferase domain - - - 0.000000000000000000000000000000000000000001977 163.0
DYD3_k127_647591_0 Cytochrome c peroxidase K00428 - 1.11.1.5 0.0 1061.0
DYD3_k127_647591_1 Belongs to the BI1 family K06890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007838 295.0
DYD3_k127_647591_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006274 280.0
DYD3_k127_647591_3 Cupin superfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008189 263.0
DYD3_k127_647591_4 PQQ-like domain K00117 - 1.1.5.2 0.00000000000000000000000000000000000000000000000000000000000262 222.0
DYD3_k127_647591_5 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000001183 206.0
DYD3_k127_647591_6 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000002689 174.0
DYD3_k127_647591_7 Protein of unknown function (DUF1232) - - - 0.000000000000000000000000000000000705 138.0
DYD3_k127_647591_8 YceI-like domain - - - 0.00000000000000000000000000001393 126.0
DYD3_k127_6478355_0 xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 1.548e-198 647.0
DYD3_k127_6478355_1 Sulfatase K01130 - 3.1.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 527.0
DYD3_k127_6478355_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008948 442.0
DYD3_k127_6478355_3 PFAM glutaredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001151 293.0
DYD3_k127_6478355_4 Sulfatase-modifying factor enzyme 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001956 293.0
DYD3_k127_6478355_5 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000003906 190.0
DYD3_k127_6478355_6 Protein of unknown function (DUF1761) - - - 0.00000000000000000000000000000000000002038 148.0
DYD3_k127_6478355_8 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000001331 103.0
DYD3_k127_649174_0 Threonine dehydratase K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 372.0
DYD3_k127_649174_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 312.0
DYD3_k127_649174_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001893 162.0
DYD3_k127_649174_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000001088 147.0
DYD3_k127_649174_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000001096 141.0
DYD3_k127_649174_5 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000003359 124.0
DYD3_k127_6505341_0 response regulator receiver K02487,K06596 - - 0.0 1065.0
DYD3_k127_6505341_1 chemotaxis, protein K02660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005041 381.0
DYD3_k127_6505341_10 Two component signalling adaptor domain K02659 - - 0.0000000000000000000000000000000001347 145.0
DYD3_k127_6505341_11 chemotaxis signal transduction protein K06598 - - 0.000000000000000001888 91.0
DYD3_k127_6505341_12 Cysteine-rich CPXCG - - - 0.0000000006864 68.0
DYD3_k127_6505341_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 378.0
DYD3_k127_6505341_3 PFAM N-acetylmuramoyl-L-alanine amidase family 2 K03806 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000001451 234.0
DYD3_k127_6505341_4 adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000001975 226.0
DYD3_k127_6505341_5 - - - - 0.00000000000000000000000000000000000000000000000000000114 201.0
DYD3_k127_6505341_6 response regulator receiver K02657 - - 0.0000000000000000000000000000000000000000000000000002604 185.0
DYD3_k127_6505341_7 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000007002 183.0
DYD3_k127_6505341_8 cheY-homologous receiver domain K02658 - - 0.0000000000000000000000000000000000000000000199 164.0
DYD3_k127_6505341_9 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000003922 151.0
DYD3_k127_6511989_0 Belongs to the GcvT family K15066 - 2.1.1.341 1.271e-254 790.0
DYD3_k127_6511989_1 Bacterial protein of unknown function (DUF885) - - - 6.366e-228 739.0
DYD3_k127_6511989_10 - - - - 0.0000000001218 70.0
DYD3_k127_6511989_2 PFAM glycine cleavage T protein (aminomethyl transferase) - - - 3.954e-194 619.0
DYD3_k127_6511989_3 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008125 575.0
DYD3_k127_6511989_4 Amino acid permease K11735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 495.0
DYD3_k127_6511989_5 PLD-like domain K06132 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 428.0
DYD3_k127_6511989_6 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0016491,GO:0016667,GO:0016671,GO:0020012,GO:0030682,GO:0033744,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0075136 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 307.0
DYD3_k127_6511989_7 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000001559 232.0
DYD3_k127_6511989_8 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000001298 94.0
DYD3_k127_6511989_9 Phospholipase D. Active site motifs. K06132 - - 0.00000000000000000002925 91.0
DYD3_k127_6551030_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 482.0
DYD3_k127_6551030_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003053 320.0
DYD3_k127_6551030_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000001551 196.0
DYD3_k127_6551030_3 peptidase K04774 - - 0.000000000000000000000000000000000000000000000009241 183.0
DYD3_k127_6551030_4 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000006327 145.0
DYD3_k127_6600498_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2143.0
DYD3_k127_6600498_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 297.0
DYD3_k127_660744_0 Belongs to the Orn Lys Arg decarboxylase class-II family K00928,K12526 - 2.7.2.4,4.1.1.20 3.707e-285 900.0
DYD3_k127_660744_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 2.939e-245 769.0
DYD3_k127_660744_10 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000937 242.0
DYD3_k127_660744_11 MerR family regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000002326 204.0
DYD3_k127_660744_12 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000001581 175.0
DYD3_k127_660744_13 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000001289 158.0
DYD3_k127_660744_14 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000002147 84.0
DYD3_k127_660744_15 Type II secretory pathway component ExeA K02450,K12283 - - 0.0000000000000001004 93.0
DYD3_k127_660744_16 Domain of unknown function (DUF3368) - - - 0.00000000003558 72.0
DYD3_k127_660744_17 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.00001184 51.0
DYD3_k127_660744_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 434.0
DYD3_k127_660744_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 426.0
DYD3_k127_660744_4 Alpha-amylase domain K01187 - 3.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 421.0
DYD3_k127_660744_5 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 340.0
DYD3_k127_660744_6 alpha amylase catalytic K05343 - 3.2.1.1,5.4.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 320.0
DYD3_k127_660744_7 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 321.0
DYD3_k127_660744_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 319.0
DYD3_k127_660744_9 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000005605 236.0
DYD3_k127_6627165_0 Protein of unknown function (DUF3570) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 370.0
DYD3_k127_6627165_1 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000002024 226.0
DYD3_k127_6627165_2 Thioredoxin-like - - - 0.0000000000000000000000000000000000004067 147.0
DYD3_k127_6627165_3 Domain of unknown function (DUF4266) - - - 0.0000000000000000001714 94.0
DYD3_k127_6627165_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000002231 52.0
DYD3_k127_6641309_0 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component K11690 GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098656,GO:1903825,GO:1905039 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006622 502.0
DYD3_k127_6641309_1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 335.0
DYD3_k127_6641309_2 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 334.0
DYD3_k127_6641309_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000003916 207.0
DYD3_k127_6641309_4 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000001248 180.0
DYD3_k127_6641309_5 TRAP-type C4-dicarboxylate transport system, small permease component K11689 - - 0.000000000000000000000000000000000000171 147.0
DYD3_k127_6641309_6 Haem-degrading - - - 0.000000003913 58.0
DYD3_k127_6641568_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1240.0
DYD3_k127_6641568_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.973e-216 700.0
DYD3_k127_6641568_10 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005996,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008690,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0019294,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046394,GO:0046400,GO:0046401,GO:0046872,GO:0070567,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006476 273.0
DYD3_k127_6641568_11 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000002859 260.0
DYD3_k127_6641568_12 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003712 258.0
DYD3_k127_6641568_13 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007304 264.0
DYD3_k127_6641568_14 MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000152 236.0
DYD3_k127_6641568_15 low molecular weight K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000000176 193.0
DYD3_k127_6641568_16 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000001062 194.0
DYD3_k127_6641568_17 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K14160 - - 0.0000000000000000000000000000000000000000000000001229 184.0
DYD3_k127_6641568_18 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000000000000000000000000000221 159.0
DYD3_k127_6641568_19 Biopolymer transport protein ExbD/TolR K03559 - - 0.000000000000000000000000000000000008266 140.0
DYD3_k127_6641568_2 PFAM Type II secretion system protein E K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 565.0
DYD3_k127_6641568_20 Transglycosylase associated protein - - - 0.000000000000000000000000000008528 120.0
DYD3_k127_6641568_21 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.0000000000000000000001918 98.0
DYD3_k127_6641568_22 Uncharacterized ACR, COG1399 K07040 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000001541 81.0
DYD3_k127_6641568_23 Dehydrogenase K15371 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0008150,GO:0008152,GO:0016491,GO:0016638,GO:0016639,GO:0055114 1.4.1.2 0.0000000000004268 79.0
DYD3_k127_6641568_3 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007754 504.0
DYD3_k127_6641568_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 432.0
DYD3_k127_6641568_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 401.0
DYD3_k127_6641568_6 General secretion pathway protein K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 408.0
DYD3_k127_6641568_7 Responsible for synthesis of pseudouridine from uracil K06179 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 319.0
DYD3_k127_6641568_8 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 307.0
DYD3_k127_6641568_9 ErfK YbiS YcfS YnhG family protein K16291 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 316.0
DYD3_k127_6656627_0 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000001498 120.0
DYD3_k127_6656627_1 - - - - 0.000000000000000000000002425 109.0
DYD3_k127_6656627_2 - - - - 0.00000000000000000000002966 110.0
DYD3_k127_6656627_3 - - - - 0.00000000000000000000006768 112.0
DYD3_k127_6656627_4 phosphatase activity K07025 - - 0.0000000000000000000001796 102.0
DYD3_k127_6661132_0 Belongs to the glutamate synthase family - - - 1.402e-256 802.0
DYD3_k127_6661132_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 482.0
DYD3_k127_6661132_2 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000001742 121.0
DYD3_k127_6661132_3 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000001973 95.0
DYD3_k127_6661132_4 Sigma-70, region 4 K03088 - - 0.000000000000007695 81.0
DYD3_k127_6666440_0 ORF located using Glimmer GeneMark Blastx COG0841 TC K03296,K18138 - - 0.0 1126.0
DYD3_k127_6666440_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1033.0
DYD3_k127_6666440_10 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000007562 48.0
DYD3_k127_6666440_2 PFAM amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 494.0
DYD3_k127_6666440_3 PFAM Major Facilitator Superfamily K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 375.0
DYD3_k127_6666440_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000005702 263.0
DYD3_k127_6666440_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000006843 231.0
DYD3_k127_6666440_6 Glycosyltransferase family 25 (LPS biosynthesis protein) K07270 - - 0.0000000000000000000000000000000000000000001451 171.0
DYD3_k127_6666440_7 - - - - 0.000000000000000000000002181 105.0
DYD3_k127_6666440_8 - - - - 0.000000000000000000006145 101.0
DYD3_k127_6666440_9 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000251 77.0
DYD3_k127_6672204_0 Protein of unknown function, DUF255 K06888 - - 2.947e-232 738.0
DYD3_k127_6672204_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 549.0
DYD3_k127_6672204_10 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000008966 143.0
DYD3_k127_6672204_11 Biopolymer transport protein K03560 - - 0.000000000000000000000000000002293 127.0
DYD3_k127_6672204_12 Protein of unknown function (DUF402) - - - 0.0000000000000000000000000000548 126.0
DYD3_k127_6672204_13 Domain of unknown function (DU1801) - - - 0.00000000000001398 84.0
DYD3_k127_6672204_14 endonuclease activity K07451 - - 0.00000000000404 71.0
DYD3_k127_6672204_2 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 479.0
DYD3_k127_6672204_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0000287,GO:0003674,GO:0003824,GO:0004799,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046385,GO:0046483,GO:0046872,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 426.0
DYD3_k127_6672204_4 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008961,GO:0009058,GO:0009059,GO:0009898,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0019538,GO:0031224,GO:0031226,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0098552,GO:0098562,GO:0140096,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 344.0
DYD3_k127_6672204_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000006639 222.0
DYD3_k127_6672204_6 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000006439 220.0
DYD3_k127_6672204_7 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000001115 207.0
DYD3_k127_6672204_8 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000001887 197.0
DYD3_k127_6672204_9 ARD/ARD' family - - - 0.00000000000000000000000000000000000001725 147.0
DYD3_k127_6678254_1 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000004224 202.0
DYD3_k127_6678254_2 response regulator K02485 - - 0.000000000000000000000000000000000000000000000000204 181.0
DYD3_k127_6678254_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000003022 126.0
DYD3_k127_6678254_4 Histidine kinase - - - 0.000000000000000000000000001144 112.0
DYD3_k127_6698462_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 4.971e-228 719.0
DYD3_k127_6698462_1 Glucose / Sorbosone dehydrogenase - - - 5.762e-201 662.0
DYD3_k127_6698462_2 peptidase M48, Ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000915 460.0
DYD3_k127_6698462_3 LysR substrate binding domain - - - 0.00000000000000000008232 91.0
DYD3_k127_6698462_4 Protein of unknown function (DUF2845) - - - 0.0000004287 56.0
DYD3_k127_670094_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007265 461.0
DYD3_k127_670094_1 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 435.0
DYD3_k127_670094_2 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 409.0
DYD3_k127_670094_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000002953 190.0
DYD3_k127_670094_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000002506 164.0
DYD3_k127_670094_5 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000000000001348 158.0
DYD3_k127_670094_6 Arylesterase - - - 0.00000000000000000000000000000000000000004011 166.0
DYD3_k127_670094_7 dienelactone hydrolase - - - 0.000000000000001573 77.0
DYD3_k127_670094_8 COG0188 Type IIA topoisomerase (DNA gyrase topo II, topoisomerase IV), A subunit - - - 0.00000000000003457 78.0
DYD3_k127_671103_0 efflux transmembrane transporter activity - - - 4.647e-219 707.0
DYD3_k127_671103_1 MacB-like periplasmic core domain - - - 7.265e-212 687.0
DYD3_k127_671103_10 Hemerythrin HHE cation binding K07322 - - 0.00000113 52.0
DYD3_k127_671103_11 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.000009139 55.0
DYD3_k127_671103_12 lysine biosynthetic process via aminoadipic acid - - - 0.00001261 49.0
DYD3_k127_671103_13 - - - - 0.00002753 52.0
DYD3_k127_671103_14 Reverse transcriptase (RNA-dependent DNA polymerase) K00986 - 2.7.7.49 0.0001133 44.0
DYD3_k127_671103_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000807 595.0
DYD3_k127_671103_3 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 295.0
DYD3_k127_671103_4 Choline/ethanolamine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000018 275.0
DYD3_k127_671103_5 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001079 262.0
DYD3_k127_671103_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000005021 219.0
DYD3_k127_671103_7 Helix-turn-helix domain - - - 0.000000000000000000000000000000005766 132.0
DYD3_k127_671103_8 - - - - 0.0000000000000000000004349 108.0
DYD3_k127_671103_9 CRISPR associated protein Cas1 - - - 0.000000007603 59.0
DYD3_k127_6714859_0 SMART Phospholipid glycerol acyltransferase K05939 - 2.3.1.40,6.2.1.20 2.888e-228 720.0
DYD3_k127_6714859_1 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 445.0
DYD3_k127_6714859_2 PFAM Major Facilitator Superfamily K08227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006067 401.0
DYD3_k127_6714859_3 - - - - 0.00000000000000000000000000001089 126.0
DYD3_k127_6714859_4 - - - - 0.0000000000000000000000000445 117.0
DYD3_k127_6714859_5 - - - - 0.00000000000000000000002538 110.0
DYD3_k127_6730999_1 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 406.0
DYD3_k127_6730999_10 - - - - 0.000000000000000001149 99.0
DYD3_k127_6730999_11 - - - - 0.000000000000003178 87.0
DYD3_k127_6730999_12 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000001942 56.0
DYD3_k127_6730999_13 SnoaL-like domain - - - 0.0002741 50.0
DYD3_k127_6730999_2 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 377.0
DYD3_k127_6730999_3 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 379.0
DYD3_k127_6730999_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001573 281.0
DYD3_k127_6730999_5 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007637 279.0
DYD3_k127_6730999_6 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000006552 251.0
DYD3_k127_6730999_7 PFAM aminoglycoside hydroxyurea antibiotic resistance kinase K04343 - 2.7.1.72 0.000000000000000000000000000000000004279 153.0
DYD3_k127_6730999_8 - - - - 0.000000000000000000000000000000001381 134.0
DYD3_k127_6730999_9 Domain of unknown function (DUF4154) - - - 0.000000000000000000000007156 109.0
DYD3_k127_6741175_0 Sodium:solute symporter family - - - 1.583e-213 681.0
DYD3_k127_6741175_1 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 317.0
DYD3_k127_6741175_2 M COG4775 Outer membrane protein protective antigen OMA87 K07278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 296.0
DYD3_k127_6741175_3 protein conserved in bacteria K09800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006099 308.0
DYD3_k127_6741175_4 AAA domain, putative AbiEii toxin, Type IV TA system K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000321 287.0
DYD3_k127_6741175_5 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000001471 151.0
DYD3_k127_6741175_6 ABC-type transport auxiliary lipoprotein component K18480 - - 0.0000000002356 70.0
DYD3_k127_6770699_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004072 583.0
DYD3_k127_6770699_1 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004529 383.0
DYD3_k127_6770699_2 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 307.0
DYD3_k127_6770699_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000004506 216.0
DYD3_k127_6770699_4 type I secretion outer membrane protein, TolC K12340 - - 0.0000000000000000000000000000000000000000000003138 190.0
DYD3_k127_6770699_5 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000001398 168.0
DYD3_k127_6770699_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000002856 127.0
DYD3_k127_6770699_7 BlaR1 peptidase M56 - - - 0.0000000000000000000000000000004969 141.0
DYD3_k127_6770699_8 Penicillinase repressor - - - 0.00000000000000000000000006032 111.0
DYD3_k127_6770699_9 - - - - 0.000000000001583 77.0
DYD3_k127_6771496_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1066.0
DYD3_k127_6771496_1 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 599.0
DYD3_k127_6771496_10 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005283 317.0
DYD3_k127_6771496_11 Lysin motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006464 319.0
DYD3_k127_6771496_12 peptidase K01414 - 3.4.24.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 290.0
DYD3_k127_6771496_13 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009183 286.0
DYD3_k127_6771496_14 PFAM methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002089 274.0
DYD3_k127_6771496_15 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000005468 218.0
DYD3_k127_6771496_16 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000003216 198.0
DYD3_k127_6771496_17 Belongs to the Smg family K03747 - - 0.00000000000000000000000000000000000000006059 168.0
DYD3_k127_6771496_18 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000000001768 147.0
DYD3_k127_6771496_19 Sporulation related domain - - - 0.0000000000000000000000000000929 123.0
DYD3_k127_6771496_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 580.0
DYD3_k127_6771496_20 PFAM Plasmid stabilisation system protein - - - 0.0000000000000000268 85.0
DYD3_k127_6771496_21 Putative addiction module component - - - 0.0000000008987 62.0
DYD3_k127_6771496_3 Peptidase inhibitor I9 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009384 566.0
DYD3_k127_6771496_4 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 499.0
DYD3_k127_6771496_5 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 477.0
DYD3_k127_6771496_6 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 409.0
DYD3_k127_6771496_7 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 384.0
DYD3_k127_6771496_8 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005612 394.0
DYD3_k127_6771496_9 TIGRFAM DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 323.0
DYD3_k127_6782001_0 glycolate transport K14393 - - 7.235e-235 743.0
DYD3_k127_6782001_1 Pyruvate 2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005154 490.0
DYD3_k127_6782001_10 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 311.0
DYD3_k127_6782001_11 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006587 306.0
DYD3_k127_6782001_12 DJ-1/PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001076 274.0
DYD3_k127_6782001_13 - - - - 0.00000000000000000000000000000000000000000000000000000000004357 213.0
DYD3_k127_6782001_14 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000007152 211.0
DYD3_k127_6782001_15 ABC transporter - - - 0.000000000000000000000000000000000000132 148.0
DYD3_k127_6782001_16 Protein of unknown function, DUF485 - - - 0.00000000000000000000000000002026 123.0
DYD3_k127_6782001_17 - - - - 0.000000000000000001848 91.0
DYD3_k127_6782001_2 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009707 470.0
DYD3_k127_6782001_3 Sulfatase K01133 - 3.1.6.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009748 448.0
DYD3_k127_6782001_4 PFAM amidohydrolase 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 427.0
DYD3_k127_6782001_5 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 416.0
DYD3_k127_6782001_6 major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 412.0
DYD3_k127_6782001_7 e3 binding domain K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 404.0
DYD3_k127_6782001_8 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 371.0
DYD3_k127_6782001_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005548 369.0
DYD3_k127_6783922_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 537.0
DYD3_k127_6783922_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 537.0
DYD3_k127_6783922_2 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 499.0
DYD3_k127_6783922_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 381.0
DYD3_k127_6783922_4 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 368.0
DYD3_k127_6783922_5 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.000000000000000000002043 95.0
DYD3_k127_6795265_0 COG0451 Nucleoside-diphosphate-sugar epimerases - - - 0.0 1088.0
DYD3_k127_6795265_1 Peptidase family S41 - - - 0.0000000000000000000000000000000000000000000000000000001111 214.0
DYD3_k127_6795265_2 COG2943 Membrane glycosyltransferase K03669 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0005976,GO:0006073,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009628,GO:0009987,GO:0016020,GO:0016021,GO:0016051,GO:0016740,GO:0016757,GO:0031224,GO:0031226,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051273,GO:0051274,GO:0071704,GO:0071944,GO:1901576 - 0.0000000000000000000000000000000000000000000001748 175.0
DYD3_k127_6795265_3 Prolyl 4-hydroxylase alpha subunit homologues. K07336 - - 0.000000000000000000000000000000000000000000000251 173.0
DYD3_k127_6795265_4 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000000000000000001391 163.0
DYD3_k127_6795265_5 Exopolysaccharide synthesis, ExoD - - - 0.00000000000000000000000000000000000000004333 160.0
DYD3_k127_6802828_0 membrane - - - 1.307e-213 689.0
DYD3_k127_6802828_1 PFAM Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 471.0
DYD3_k127_6802828_2 Belongs to the HpcH HpaI aldolase family K00979,K01630,K02510 - 2.7.7.38,4.1.2.20,4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000001015 267.0
DYD3_k127_6802828_3 Alkylated DNA repair protein K03919 - 1.14.11.33 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 252.0
DYD3_k127_6802828_4 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000001303 258.0
DYD3_k127_6802828_5 DSBA-like thioredoxin domain K07396 - - 0.00000000000000000000000000000000000000000000000001962 191.0
DYD3_k127_6802828_6 amidohydrolase - - - 0.0000000000000000000000006758 119.0
DYD3_k127_6802828_7 COG1664 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000001558 103.0
DYD3_k127_6802828_8 Protein of unknown function (DUF1289) - - - 0.00000000000005415 74.0
DYD3_k127_6802828_9 oligosaccharyl transferase activity - - - 0.000000004335 70.0
DYD3_k127_6855876_0 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004945 362.0
DYD3_k127_6855876_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 321.0
DYD3_k127_6855876_2 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008768 304.0
DYD3_k127_6855876_3 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000008576 124.0
DYD3_k127_6855876_4 TIGRFAM filamentous hemagglutinin family N-terminal domain - - - 0.000000000000000000000003007 119.0
DYD3_k127_6855876_5 Protein of unknown function DUF86 - - - 0.000000000000000005225 90.0
DYD3_k127_6855876_6 Nucleotidyltransferase domain - - - 0.00000000000005054 79.0
DYD3_k127_6855876_7 Belongs to the LOG family K06966 - 3.2.2.10 0.0000005097 53.0
DYD3_k127_6864866_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 364.0
DYD3_k127_6864866_1 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000000001748 193.0
DYD3_k127_6864866_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000002644 161.0
DYD3_k127_6864866_3 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.00000000000000000000004167 116.0
DYD3_k127_6896416_0 PAS domain K13924 - 2.1.1.80,3.1.1.61 2.005e-251 803.0
DYD3_k127_6896416_1 protein-glutamate methylesterase K00575,K13924 - 2.1.1.80,3.1.1.61 2.367e-219 724.0
DYD3_k127_6896416_10 - - - - 0.000000000000000000000000000000000000000000000000000002551 214.0
DYD3_k127_6896416_11 methyltransferase - - - 0.000000000000000000000000000000000000000000000433 175.0
DYD3_k127_6896416_12 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000002333 164.0
DYD3_k127_6896416_13 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000001777 124.0
DYD3_k127_6896416_14 - - - - 0.0000000000000000000000003072 119.0
DYD3_k127_6896416_15 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000005963 89.0
DYD3_k127_6896416_2 phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009804 495.0
DYD3_k127_6896416_3 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 383.0
DYD3_k127_6896416_4 cytochrome K17230 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 352.0
DYD3_k127_6896416_5 Glutathione S-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008737 322.0
DYD3_k127_6896416_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003223 315.0
DYD3_k127_6896416_7 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 303.0
DYD3_k127_6896416_8 Uncharacterised protein family UPF0066 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 294.0
DYD3_k127_6896416_9 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000213 237.0
DYD3_k127_6912315_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.595e-259 816.0
DYD3_k127_6912315_1 Protein tyrosine kinase - - - 3.878e-215 695.0
DYD3_k127_6912315_2 PFAM Type II secretion system protein E - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000897 522.0
DYD3_k127_6912315_3 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 426.0
DYD3_k127_6912315_4 Part of a membrane complex involved in electron transport K03615 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001146 267.0
DYD3_k127_6912315_5 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000007169 195.0
DYD3_k127_6930205_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1188.0
DYD3_k127_6930205_1 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 367.0
DYD3_k127_6930205_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005541 310.0
DYD3_k127_6930205_3 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000524 223.0
DYD3_k127_6930205_4 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane - - - 0.000000000004026 74.0
DYD3_k127_6956159_0 DNA segregation ATPase FtsK SpoIIIE K03466 - - 1.261e-274 864.0
DYD3_k127_6956159_1 - - - - 8.938e-205 659.0
DYD3_k127_6956159_10 Putative restriction endonuclease - - - 0.00000000000000000000009731 102.0
DYD3_k127_6956159_11 Belongs to the ClpA ClpB family K03694 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 - 0.00000000000003759 74.0
DYD3_k127_6956159_12 Putative restriction endonuclease - - - 0.000000001291 61.0
DYD3_k127_6956159_13 PFAM VanZ - - - 0.000008721 57.0
DYD3_k127_6956159_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007921 554.0
DYD3_k127_6956159_3 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 396.0
DYD3_k127_6956159_4 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001779 280.0
DYD3_k127_6956159_5 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000002213 257.0
DYD3_k127_6956159_6 Cell wall-active antibiotics response 4TMS YvqF - - - 0.00000000000000000000000000000000000023 145.0
DYD3_k127_6956159_7 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000000000000000003668 147.0
DYD3_k127_6956159_8 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000002959 138.0
DYD3_k127_6956159_9 Protein of unknown function (DUF3667) - - - 0.00000000000000000000000004153 120.0
DYD3_k127_6962193_1 Domain of unknown function (DUF4143) K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 459.0
DYD3_k127_6962193_2 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 422.0
DYD3_k127_6962193_3 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 413.0
DYD3_k127_6962193_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 292.0
DYD3_k127_6962193_5 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000114 244.0
DYD3_k127_6962193_6 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000007733 204.0
DYD3_k127_6962193_8 - - - - 0.0000009651 52.0
DYD3_k127_6997100_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 6.13e-275 856.0
DYD3_k127_6997100_1 MacB-like periplasmic core domain - - - 6.47e-230 739.0
DYD3_k127_7006983_0 OsmC-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 443.0
DYD3_k127_7006983_1 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 362.0
DYD3_k127_7006983_2 TIGRFAM Diguanylate cyclase K13590 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000001564 247.0
DYD3_k127_7006983_3 - - - - 0.00000000000000000000000000000000000000004076 155.0
DYD3_k127_7050246_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009483 508.0
DYD3_k127_7050246_1 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 489.0
DYD3_k127_7050246_10 Cytochrome c-type biogenesis protein K02200 - - 0.0002984 50.0
DYD3_k127_7050246_2 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 347.0
DYD3_k127_7050246_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000947 326.0
DYD3_k127_7050246_4 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 319.0
DYD3_k127_7050246_5 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000125 285.0
DYD3_k127_7050246_6 sister chromatid segregation - - - 0.00000000000000000000000000000000000000000000000002718 189.0
DYD3_k127_7050246_7 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000007263 184.0
DYD3_k127_7050246_8 cellulase activity - - - 0.000000000000000000000000000000000000007934 162.0
DYD3_k127_7050246_9 - - - - 0.0000000000000000000000000459 116.0
DYD3_k127_7058346_0 MacB-like periplasmic core domain - - - 5.569e-224 720.0
DYD3_k127_7058346_1 MacB-like periplasmic core domain - - - 7.902e-218 703.0
DYD3_k127_7058346_2 MacB-like periplasmic core domain - - - 6.375e-215 708.0
DYD3_k127_7058346_3 Superoxide dismutase K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 292.0
DYD3_k127_7058346_4 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000001045 135.0
DYD3_k127_7062185_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 2.175e-226 735.0
DYD3_k127_7062185_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.539e-210 665.0
DYD3_k127_7062185_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 442.0
DYD3_k127_7062185_3 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 429.0
DYD3_k127_7062185_4 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003762 259.0
DYD3_k127_7062185_5 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001329 250.0
DYD3_k127_7113399_0 PFAM Patatin K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 365.0
DYD3_k127_7113399_1 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004119 329.0
DYD3_k127_7113399_10 DNA-binding transcription factor activity - - - 0.00000004243 62.0
DYD3_k127_7113399_2 Glucose / Sorbosone dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 300.0
DYD3_k127_7113399_3 Tannase and feruloyl esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005578 253.0
DYD3_k127_7113399_4 Integron-associated effector binding protein K13652 - - 0.00000000000000000000000000000000000000000000000000000000000000002679 233.0
DYD3_k127_7113399_5 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000001108 222.0
DYD3_k127_7113399_6 Alpha/beta hydrolase family K22318 - - 0.00000000000000000000000000000000000000000000000000000004058 207.0
DYD3_k127_7113399_7 (twin-arginine translocation) pathway signal - - - 0.000000000000000000002296 104.0
DYD3_k127_7113399_8 - - - - 0.00000000000001917 87.0
DYD3_k127_7113399_9 - - - - 0.0000000000008097 73.0
DYD3_k127_7114746_0 DNA topological change K03168 - 5.99.1.2 1.822e-206 666.0
DYD3_k127_7114746_1 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 443.0
DYD3_k127_7114746_2 ankyrin repeat K15503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 316.0
DYD3_k127_7114746_3 endonuclease activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000002525 249.0
DYD3_k127_7114746_4 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000002159 126.0
DYD3_k127_7121904_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 516.0
DYD3_k127_7121904_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 384.0
DYD3_k127_7121904_10 iron ion binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000002246 239.0
DYD3_k127_7121904_11 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000112 237.0
DYD3_k127_7121904_12 ABC-2 family transporter protein - - - 0.00000000000000000000000000000000000000000000001351 183.0
DYD3_k127_7121904_13 PFAM Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000001462 175.0
DYD3_k127_7121904_14 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000000003658 161.0
DYD3_k127_7121904_15 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000007138 143.0
DYD3_k127_7121904_16 TonB-dependent receptor - - - 0.000000000000000000007237 107.0
DYD3_k127_7121904_18 BlaR1 peptidase M56 - - - 0.0000001361 65.0
DYD3_k127_7121904_19 6-phosphogluconolactonase activity K20276 - - 0.00001439 57.0
DYD3_k127_7121904_2 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008911 364.0
DYD3_k127_7121904_20 - - - - 0.00001966 52.0
DYD3_k127_7121904_3 20S proteasome, A and B subunits K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 331.0
DYD3_k127_7121904_5 alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001112 282.0
DYD3_k127_7121904_6 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001364 276.0
DYD3_k127_7121904_7 Peptidase M56, BlaR1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001533 287.0
DYD3_k127_7121904_8 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001151 246.0
DYD3_k127_7121904_9 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001728 253.0
DYD3_k127_7127570_0 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000003558 191.0
DYD3_k127_7127570_1 Membrane - - - 0.0000000000000000000000000000000000000003387 156.0
DYD3_k127_7127570_2 Fatty acyl CoA synthetase - - - 0.00000000000000000000000000000000000001688 153.0
DYD3_k127_7127570_3 Beta-ketoacyl synthase, N-terminal domain - - - 0.000000000000000000000000000000000008426 145.0
DYD3_k127_7127570_4 acyl carrier protein K02078 - - 0.0000000000000000000000000009318 119.0
DYD3_k127_7127570_5 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000003352 106.0
DYD3_k127_7127570_6 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.00000000000000000208 94.0
DYD3_k127_7211676_0 AAA-like domain - - - 0.00000000000000000000000000000000000000000000000008641 205.0
DYD3_k127_7211676_1 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000001483 174.0
DYD3_k127_7211676_2 serine threonine protein kinase - - - 0.000000000000000000000000000000000000000001133 177.0
DYD3_k127_7211676_3 - - - - 0.0000004411 55.0
DYD3_k127_7211676_4 ligase activity - - - 0.000003599 53.0
DYD3_k127_7211676_5 COG0501 Zn-dependent protease with chaperone function K03799 - - 0.0001163 49.0
DYD3_k127_7211943_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 1.465e-222 698.0
DYD3_k127_7211943_1 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001521 279.0
DYD3_k127_7211943_2 Ribose-phosphate pyrophosphokinase K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002618 280.0
DYD3_k127_7211943_3 'Cold-shock' DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000006384 233.0
DYD3_k127_7211943_4 Phosphoribosyl transferase domain K07100 - - 0.00000000000000000000000000000000000000000000000000000000002264 220.0
DYD3_k127_7211943_5 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000004962 173.0
DYD3_k127_7212035_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006945 417.0
DYD3_k127_7212035_1 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 363.0
DYD3_k127_7212035_2 Oxygen tolerance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005612 267.0
DYD3_k127_7212035_3 Glyoxalase bleomycin resistance protein dioxygenase K01759 GO:0003674,GO:0003824,GO:0004462,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016846,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000496 235.0
DYD3_k127_7212035_4 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000006676 232.0
DYD3_k127_7212035_5 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000001645 59.0
DYD3_k127_7212035_6 Domain of unknown function (DUF4381) - - - 0.0001351 46.0
DYD3_k127_7213683_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 7.182e-296 934.0
DYD3_k127_7213683_1 glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 398.0
DYD3_k127_7213683_2 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009669 371.0
DYD3_k127_7213683_3 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 295.0
DYD3_k127_7213683_4 Beta-lactamase superfamily domain K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000442 236.0
DYD3_k127_728004_1 short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 411.0
DYD3_k127_728004_2 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 370.0
DYD3_k127_728004_3 extensin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005169 258.0
DYD3_k127_728004_4 glyoxalase III activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009094 248.0
DYD3_k127_728004_5 Glutamine cyclotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002425 242.0
DYD3_k127_742469_0 Mo-co oxidoreductase dimerisation domain K17225 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 498.0
DYD3_k127_742469_1 Protein of unknown function (DUF3500) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 491.0
DYD3_k127_742469_2 ABC transporter transmembrane region K06147,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 374.0
DYD3_k127_742469_3 Putative member of DMT superfamily (DUF486) K09922 - - 0.0000000000000000000000000000000000000000000000000000000007659 203.0
DYD3_k127_742469_4 Cytochrome C oxidase, cbb3-type, subunit III K08738 - - 0.000000000000000000000000000000000000000000000000000003041 195.0
DYD3_k127_742469_5 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000001588 170.0
DYD3_k127_742469_6 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000004067 136.0
DYD3_k127_742469_8 SPTR CHU large protein - - - 0.0000000001255 76.0
DYD3_k127_7941_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 534.0
DYD3_k127_7941_1 NADH ubiquinone oxidoreductase subunit K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 526.0
DYD3_k127_7941_2 - - - - 0.000000000000000000000000000003604 128.0
DYD3_k127_7941_3 HicA toxin of bacterial toxin-antitoxin, - - - 0.00000000000000000000000004553 109.0
DYD3_k127_7941_4 Recombinase - - - 0.000000000000000004583 95.0
DYD3_k127_7941_6 - - - - 0.0000001729 57.0
DYD3_k127_827069_0 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 2.982e-227 715.0
DYD3_k127_827069_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000001228 264.0
DYD3_k127_827069_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002028 268.0
DYD3_k127_827069_3 peptidylprolyl isomerase, FKBP-type K01802,K03772 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000007001 218.0
DYD3_k127_827069_4 Protein of unknown function (DUF3014) - - - 0.000000000000000000000000000000000000000000000001633 184.0
DYD3_k127_827069_5 - - - - 0.000000000000000007379 89.0
DYD3_k127_849219_0 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 558.0
DYD3_k127_849219_1 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 385.0
DYD3_k127_849219_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004292 265.0
DYD3_k127_849219_3 - - - - 0.000000000000000000000000000000000000000008815 156.0
DYD3_k127_849219_4 - - - - 0.00000000000000000000000000000000002053 153.0
DYD3_k127_849219_5 - - - - 0.00000000000000000000000000001137 123.0
DYD3_k127_849219_6 efflux transmembrane transporter activity - - - 0.000000000000000000000002226 109.0
DYD3_k127_849219_7 - - - - 0.0000000001574 72.0
DYD3_k127_881087_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 1.271e-305 952.0
DYD3_k127_881087_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 1.804e-293 923.0
DYD3_k127_881087_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000082 277.0
DYD3_k127_881087_3 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000000001701 136.0
DYD3_k127_881087_4 - - - - 0.0000000000000000000000000000000002277 139.0
DYD3_k127_881087_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000001295 89.0
DYD3_k127_912503_0 Peptidase family S41 - - - 1.953e-207 670.0
DYD3_k127_912503_1 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 458.0
DYD3_k127_912503_3 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000004061 213.0
DYD3_k127_912503_4 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000008373 195.0
DYD3_k127_912503_5 Transcriptional regulator - - - 0.000000007739 66.0
DYD3_k127_915575_0 PFAM peptidase M3A and M3B, thimet oligopeptidase F K01414 - 3.4.24.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004357 456.0
DYD3_k127_915575_1 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 331.0
DYD3_k127_915575_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001661 281.0
DYD3_k127_915575_3 Metal binding domain of Ada K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000002537 211.0
DYD3_k127_915575_4 PFAM TfoX N-terminal domain K07343 - - 0.000000000000000000000002247 107.0
DYD3_k127_915575_5 - - - - 0.000001773 55.0
DYD3_k127_923448_0 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007267 562.0
DYD3_k127_923448_1 Domain of unknown function (DUF3333) K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 548.0
DYD3_k127_923448_2 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 446.0
DYD3_k127_923448_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 441.0
DYD3_k127_923448_4 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009014,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0032153,GO:0042802,GO:0043167,GO:0043169,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0046872,GO:0046914,GO:0050897,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 435.0
DYD3_k127_923448_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.00004708 53.0
DYD3_k127_932932_0 MacB-like periplasmic core domain - - - 5.257e-246 784.0
DYD3_k127_932932_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 570.0
DYD3_k127_932932_10 YCII-related domain - - - 0.000000000000008248 75.0
DYD3_k127_932932_11 MacB-like periplasmic core domain - - - 0.0000000286 63.0
DYD3_k127_932932_2 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000003283 264.0
DYD3_k127_932932_3 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000007171 233.0
DYD3_k127_932932_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07032 - - 0.00000000000000000000000000000000000000000000000000000000000000005325 226.0
DYD3_k127_932932_5 response regulator - - - 0.000000000000000000000000000000000000000000000003865 179.0
DYD3_k127_932932_6 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000005455 130.0
DYD3_k127_932932_7 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000003953 129.0
DYD3_k127_932932_8 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000009569 107.0
DYD3_k127_932932_9 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000003522 83.0
DYD3_k127_933703_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009002 563.0
DYD3_k127_933703_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 315.0
DYD3_k127_933703_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000122 271.0
DYD3_k127_933703_3 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000000000000000000000001737 213.0
DYD3_k127_933703_4 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000002944 69.0
DYD3_k127_935339_0 MacB-like periplasmic core domain - - - 1.076e-226 734.0
DYD3_k127_935339_1 PFAM SMP-30 Gluconolaconase K08685,K14274 GO:0003674,GO:0003824,GO:0004341,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016787,GO:0016788,GO:0019752,GO:0019852,GO:0019853,GO:0042364,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046364,GO:0046394,GO:0046872,GO:0051186,GO:0051188,GO:0052689,GO:0071704,GO:1901576 1.4.9.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 392.0
DYD3_k127_935339_10 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000001676 182.0
DYD3_k127_935339_11 SnoaL-like polyketide cyclase - - - 0.0000000000000000000000000000001376 136.0
DYD3_k127_935339_12 - - - - 0.00000003695 62.0
DYD3_k127_935339_13 amine dehydrogenase activity - - - 0.00000007565 65.0
DYD3_k127_935339_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 393.0
DYD3_k127_935339_3 glutathione transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001842 252.0
DYD3_k127_935339_4 phosphorelay signal transduction system K02477,K07705,K21696 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000006574 256.0
DYD3_k127_935339_5 bis(5'-adenosyl)-triphosphatase activity K02503 - - 0.000000000000000000000000000000000000000000000000000000000000007915 220.0
DYD3_k127_935339_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000006704 226.0
DYD3_k127_935339_7 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.0000000000000000000000000000000000000000000000000000000000005171 217.0
DYD3_k127_935339_8 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000008511 200.0
DYD3_k127_935339_9 Uncharacterized protein conserved in bacteria (DUF2239) K09965 - - 0.00000000000000000000000000000000000000000000000005856 190.0
DYD3_k127_971328_0 receptor K16090 - - 5.603e-234 747.0
DYD3_k127_971328_1 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 523.0
DYD3_k127_971328_10 - - - - 0.000000000000000000000000000000000000001015 154.0
DYD3_k127_971328_11 SnoaL-like domain - - - 0.000000000000000000000000000009988 124.0
DYD3_k127_971328_12 PFAM Thioredoxin - - - 0.0000000006462 68.0
DYD3_k127_971328_2 PKHD-type hydroxylase K07336 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 327.0
DYD3_k127_971328_3 Superoxide dismutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 289.0
DYD3_k127_971328_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000002513 206.0
DYD3_k127_971328_5 - - - - 0.0000000000000000000000000000000000000000000000000002629 198.0
DYD3_k127_971328_6 - - - - 0.0000000000000000000000000000000000000000000000000003097 198.0
DYD3_k127_971328_7 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000081 180.0
DYD3_k127_971328_8 - - - - 0.000000000000000000000000000000000000000000002208 181.0
DYD3_k127_971328_9 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000009215 172.0
DYD3_k127_974663_0 PFAM Glycosyl transferase family 2 K20534 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 316.0
DYD3_k127_974663_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 296.0
DYD3_k127_974663_2 hopanoid biosynthesis associated protein HpnK K03478 - 3.5.1.105 0.00000000000000000000000000000000000000000000000000000000000000000009326 255.0
DYD3_k127_974663_3 belongs to the aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000006384 233.0
DYD3_k127_974663_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001371 246.0
DYD3_k127_974663_5 GtrA-like protein - - - 0.00000000001578 70.0