Overview

ID MAG00965
Name DYD3_bin.38
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family SG8-39
Genus 2-02-FULL-66-14
Species
Assembly information
Completeness (%) 79.79
Contamination (%) 0.04
GC content (%) 66.0
N50 (bp) 10,984
Genome size (bp) 2,377,425

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2436

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1008789_0 Methylmalonyl-CoA mutase K01848 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 5.4.99.2 1.345e-229 730.0
DYD3_k127_1008789_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.982e-206 651.0
DYD3_k127_1008789_10 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007858 347.0
DYD3_k127_1008789_11 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003942 339.0
DYD3_k127_1008789_12 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 325.0
DYD3_k127_1008789_13 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 314.0
DYD3_k127_1008789_14 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 314.0
DYD3_k127_1008789_15 Deoxynucleoside kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002787 273.0
DYD3_k127_1008789_16 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003206 284.0
DYD3_k127_1008789_17 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000001203 259.0
DYD3_k127_1008789_18 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000001218 207.0
DYD3_k127_1008789_19 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000029 205.0
DYD3_k127_1008789_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 596.0
DYD3_k127_1008789_20 TIGRFAM DnaA regulatory inactivator Hda K10763 - - 0.0000000000000000000000000000000000000000000000000001819 192.0
DYD3_k127_1008789_21 MobA-Related Protein K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000002383 191.0
DYD3_k127_1008789_22 B12 binding domain K01849 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0036094,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901363,GO:1901564 5.4.99.2 0.0000000000000000000000000000000000000000000000000003355 187.0
DYD3_k127_1008789_23 Phasin protein - - - 0.00000000000000000000000000000000000000000000000002709 184.0
DYD3_k127_1008789_24 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000002677 178.0
DYD3_k127_1008789_25 transcriptional regulator - - - 0.000000000000000000000000000000000000000000007853 170.0
DYD3_k127_1008789_26 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000000003089 175.0
DYD3_k127_1008789_27 EamA-like transporter family - - - 0.000000000000000000000000000000000000008602 162.0
DYD3_k127_1008789_28 Protein of unknown function (DUF3108) - - - 0.000000000000000000001687 102.0
DYD3_k127_1008789_3 PFAM fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007648 560.0
DYD3_k127_1008789_4 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 514.0
DYD3_k127_1008789_5 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 490.0
DYD3_k127_1008789_6 XdhC and CoxI family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 424.0
DYD3_k127_1008789_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005778 427.0
DYD3_k127_1008789_8 polyphosphate kinase K22468 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005071 412.0
DYD3_k127_1008789_9 Integral membrane protein TerC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 359.0
DYD3_k127_1048460_0 aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003521 529.0
DYD3_k127_1048460_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 470.0
DYD3_k127_1048460_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000003317 222.0
DYD3_k127_1048460_3 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.000000000000000000000000000000000000000000000000000000000001171 231.0
DYD3_k127_1057330_0 TonB dependent receptor - - - 3.916e-300 950.0
DYD3_k127_1057330_1 Belongs to the ABC transporter superfamily K02031,K02032,K10823,K13896,K15583 - - 1.301e-211 670.0
DYD3_k127_1057330_10 - - - - 0.000000000000000000000000003906 119.0
DYD3_k127_1057330_11 - - - - 0.0000000001216 69.0
DYD3_k127_1057330_2 PFAM MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006604 321.0
DYD3_k127_1057330_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 307.0
DYD3_k127_1057330_4 enzyme of heme biosynthesis K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002791 265.0
DYD3_k127_1057330_5 HemX, putative uroporphyrinogen-III C-methyltransferase K02496,K13543 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000001978 249.0
DYD3_k127_1057330_6 TonB dependent biopolymer transporter integral cytoplasmic membrane subunit, working with ExbB K03559 - - 0.000000000000000000000000000000000000000000000000000005711 194.0
DYD3_k127_1057330_7 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000000000000000000000000000000000000000002625 199.0
DYD3_k127_1057330_8 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000000000000000000000000000000000000000000000007751 190.0
DYD3_k127_1057330_9 Protein of unknown function (DUF3313) - - - 0.0000000000000000000000000002826 124.0
DYD3_k127_1099878_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 5.664e-233 739.0
DYD3_k127_1099878_1 Resistance to Hg(2 ) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) K00520,K21739 - 1.16.1.1 6.242e-198 626.0
DYD3_k127_1099878_10 nuclease - - - 0.0000000008333 64.0
DYD3_k127_1099878_12 AAA domain K03582 - 3.1.11.5 0.000009353 48.0
DYD3_k127_1099878_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 573.0
DYD3_k127_1099878_3 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 518.0
DYD3_k127_1099878_4 ABC transporter K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002818 475.0
DYD3_k127_1099878_5 transport, permease protein K01992 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 409.0
DYD3_k127_1099878_6 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008272 363.0
DYD3_k127_1099878_7 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000008272 148.0
DYD3_k127_1099878_8 STAS domain K06378 - - 0.0000000000000000000000222 107.0
DYD3_k127_1099878_9 Beta-lactamase superfamily domain - - - 0.000000000000000004777 85.0
DYD3_k127_1114688_0 Histidine kinase K02482 - 2.7.13.3 2.996e-214 682.0
DYD3_k127_1114688_1 response regulator K02481 - - 2.596e-209 672.0
DYD3_k127_1114688_2 Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 520.0
DYD3_k127_1114688_3 denitrification pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 428.0
DYD3_k127_1114688_4 cytochrome - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 333.0
DYD3_k127_1114688_5 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 306.0
DYD3_k127_1114688_6 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007331 304.0
DYD3_k127_1114688_7 phosphorelay signal transduction system K02437 - - 0.0000000000000000000000000000006644 128.0
DYD3_k127_1114688_8 Class III cytochrome C family - - - 0.0003385 50.0
DYD3_k127_1116959_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 612.0
DYD3_k127_1116959_1 Major Facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 513.0
DYD3_k127_1116959_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 402.0
DYD3_k127_1116959_3 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 401.0
DYD3_k127_1116959_4 Flavodoxin domain K00230 - 1.3.5.3 0.0000000000000000000000000000000000004766 149.0
DYD3_k127_1116959_5 Domain of unknown function (DUF4160) - - - 0.000000000000000000002508 95.0
DYD3_k127_1116959_6 Protein of unknown function (DUF2442) - - - 0.000000000000000001754 91.0
DYD3_k127_1116959_7 PFAM Zinc carboxypeptidase - - - 0.000000000000002503 85.0
DYD3_k127_1208341_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0 1143.0
DYD3_k127_1208341_1 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744 497.0
DYD3_k127_1208341_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 457.0
DYD3_k127_1208341_3 RadC-like JAB domain K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 287.0
DYD3_k127_1208341_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000005379 237.0
DYD3_k127_1208341_5 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000000000001104 224.0
DYD3_k127_1208341_6 Belongs to the ClpA ClpB family K03694 - - 0.00000000000000000000000000000000000000000000001444 173.0
DYD3_k127_1208341_7 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000209 117.0
DYD3_k127_1208341_8 cytochrome - - - 0.00000000000000000000016 99.0
DYD3_k127_1208341_9 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000000001481 94.0
DYD3_k127_1226587_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 591.0
DYD3_k127_1226587_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003229 462.0
DYD3_k127_1226587_2 Peptidase C26 K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006863 288.0
DYD3_k127_1229442_0 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 4.835e-237 755.0
DYD3_k127_1229442_1 Pfam:DUF1446 - - - 5.997e-227 728.0
DYD3_k127_1229442_10 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000192 210.0
DYD3_k127_1229442_11 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000317 160.0
DYD3_k127_1229442_13 Peptidase family U32 - - - 0.00000000000000000000000000000003698 128.0
DYD3_k127_1229442_14 lipid carrier protein - - - 0.000000000000000000000000002414 120.0
DYD3_k127_1229442_15 MerR HTH family regulatory protein K18997 - - 0.0000000000000000000000009243 106.0
DYD3_k127_1229442_16 Glycine zipper - - - 0.0002776 49.0
DYD3_k127_1229442_2 heat shock protein DnaJ K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 454.0
DYD3_k127_1229442_3 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 448.0
DYD3_k127_1229442_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 437.0
DYD3_k127_1229442_5 abc transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 364.0
DYD3_k127_1229442_6 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 361.0
DYD3_k127_1229442_7 Belongs to the phosphoglycerate mutase family K15634 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000006264 233.0
DYD3_k127_1229442_8 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000003915 231.0
DYD3_k127_1229442_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000005214 220.0
DYD3_k127_129380_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1694.0
DYD3_k127_129380_1 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 563.0
DYD3_k127_129380_2 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002465 281.0
DYD3_k127_129380_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000004677 234.0
DYD3_k127_129380_4 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000007101 95.0
DYD3_k127_129380_5 RNA-binding protein containing KH domain possibly ribosomal protein - - - 0.0000000000000000000143 99.0
DYD3_k127_137107_0 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004838 518.0
DYD3_k127_137107_1 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 521.0
DYD3_k127_137107_10 Acts as a magnesium transporter K06213 - - 0.00000000002462 67.0
DYD3_k127_137107_11 Histidine kinase K07641 - 2.7.13.3 0.000001922 61.0
DYD3_k127_137107_2 Histidine kinase K07641 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006226 376.0
DYD3_k127_137107_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005066 316.0
DYD3_k127_137107_4 membrane transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007124 316.0
DYD3_k127_137107_5 hydrolases of the HAD superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 306.0
DYD3_k127_137107_6 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000006077 248.0
DYD3_k127_137107_7 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000001398 220.0
DYD3_k127_137107_8 Conserved TM helix - - - 0.000000000000000000000000000000000000000000000000000000000002005 228.0
DYD3_k127_137107_9 MgtE intracellular N domain - - - 0.000000000000000000000000000000000000000000000000000825 194.0
DYD3_k127_139524_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.826e-303 949.0
DYD3_k127_139524_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.217e-285 888.0
DYD3_k127_139524_10 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 485.0
DYD3_k127_139524_11 Mediates influx of magnesium ions K03284,K16074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 439.0
DYD3_k127_139524_12 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 425.0
DYD3_k127_139524_13 PFAM aminotransferase, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 388.0
DYD3_k127_139524_14 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 358.0
DYD3_k127_139524_15 Alcohol dehydrogenase GroES-like domain K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 360.0
DYD3_k127_139524_16 Uracil DNA glycosylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004597 293.0
DYD3_k127_139524_17 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003601 251.0
DYD3_k127_139524_18 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000003709 222.0
DYD3_k127_139524_19 Histidine phosphatase superfamily (branch 1) - - - 0.00000000000000000000000000000000000000000000000000000000000008651 218.0
DYD3_k127_139524_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 2.307e-268 841.0
DYD3_k127_139524_20 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000025 200.0
DYD3_k127_139524_21 Protein of unknown function (DUF1643) - - - 0.000000000000000000000000000000000000000000000000000003819 195.0
DYD3_k127_139524_22 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.00000000000000000000000000000000000000000000000000001553 201.0
DYD3_k127_139524_23 peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.0000000000000000000000000000000000000000000000001809 186.0
DYD3_k127_139524_24 Preprotein translocase subunit K03210 - - 0.000000000000000000000000000000000000000959 150.0
DYD3_k127_139524_25 Peptidyl-prolyl cis-trans K03772 - 5.2.1.8 0.000000000000000000000000000000004547 138.0
DYD3_k127_139524_26 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000000000000000009205 117.0
DYD3_k127_139524_27 Belongs to the UPF0178 family K09768 - - 0.000000000000000002048 86.0
DYD3_k127_139524_28 Transcriptional regulator - - - 0.0000000000000000685 87.0
DYD3_k127_139524_29 tRNA methyl transferase K00566 - 2.8.1.13 0.000000000001103 68.0
DYD3_k127_139524_3 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 2.873e-236 748.0
DYD3_k127_139524_4 ABC transporter C-terminal domain K15738 - - 1.574e-205 655.0
DYD3_k127_139524_5 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 2.503e-194 617.0
DYD3_k127_139524_6 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 621.0
DYD3_k127_139524_7 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005922 605.0
DYD3_k127_139524_8 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008577 610.0
DYD3_k127_139524_9 PFAM DNA photolyase FAD-binding K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 566.0
DYD3_k127_1439237_0 Heavy-metal-associated domain K01533 - 3.6.3.4 7.418e-223 716.0
DYD3_k127_1439237_1 Cysteine-rich domain - - - 1.366e-205 649.0
DYD3_k127_1439237_2 Hsp20/alpha crystallin family - - - 0.00000000000000000000000000000000000000002587 156.0
DYD3_k127_1439237_3 cytochrome oxidase maturation protein cbb3-type - - - 0.0000001619 64.0
DYD3_k127_1519977_0 polyphosphate kinase - - - 4.007e-247 770.0
DYD3_k127_1519977_1 PFAM Pyruvate kinase barrel K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005174 518.0
DYD3_k127_1519977_2 TonB-dependent heme hemoglobin receptor K16087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 481.0
DYD3_k127_1519977_3 PFAM biotin lipoate A B protein ligase - - - 0.000003329 57.0
DYD3_k127_1542221_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1434.0
DYD3_k127_1542221_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 2.391e-201 632.0
DYD3_k127_1542221_10 Protein of unknown function (DUF2892) - - - 0.00000000000000000000000009258 117.0
DYD3_k127_1542221_11 Metal-sensitive transcriptional repressor - - - 0.0000000000001986 83.0
DYD3_k127_1542221_12 Macrocin-O-methyltransferase (TylF) K05303 - - 0.000000001964 59.0
DYD3_k127_1542221_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003762 491.0
DYD3_k127_1542221_3 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009444 437.0
DYD3_k127_1542221_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 357.0
DYD3_k127_1542221_5 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000000000003513 188.0
DYD3_k127_1542221_6 Thioredoxin K03672 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000008277 187.0
DYD3_k127_1542221_7 protein possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000000000003814 182.0
DYD3_k127_1542221_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000001465 171.0
DYD3_k127_1542221_9 OsmC-like protein - - - 0.0000000000000000000000000000000000002158 146.0
DYD3_k127_1550558_0 Sodium Bile acid symporter family K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 538.0
DYD3_k127_1550558_1 Outer membrane protein beta-barrel family K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 286.0
DYD3_k127_1550558_2 ArsC family K00537,K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000005168 202.0
DYD3_k127_1550558_3 Prokaryotic diacylglycerol kinase - - - 0.000000000000000000000000000000005782 131.0
DYD3_k127_1553788_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 9.101e-217 681.0
DYD3_k127_1553788_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 1.974e-198 631.0
DYD3_k127_1553788_2 Rod shape-determining protein MreB K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 514.0
DYD3_k127_1553788_3 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 379.0
DYD3_k127_1553788_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004189 336.0
DYD3_k127_1553788_5 Bacterial protein of unknown function (DUF883) - - - 0.000000000000000000000000000000002828 132.0
DYD3_k127_1553788_6 Glu-tRNAGln amidotransferase C subunit - - - 0.0000000000000000000000000002769 118.0
DYD3_k127_1553788_7 - - - - 0.000000000000000000001092 103.0
DYD3_k127_1553788_8 - - - - 0.0000000000000000001761 96.0
DYD3_k127_1553788_9 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0000000002941 66.0
DYD3_k127_1598361_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 447.0
DYD3_k127_1598361_1 Putative serine dehydratase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 397.0
DYD3_k127_1598361_2 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 347.0
DYD3_k127_1598361_3 - - - - 0.0000000000000004594 82.0
DYD3_k127_1598361_4 Major Facilitator Superfamily - - - 0.0000000005032 72.0
DYD3_k127_1635730_0 SNARE associated Golgi protein - - - 0.0 1027.0
DYD3_k127_1635730_1 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003356 289.0
DYD3_k127_1635730_2 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007355 302.0
DYD3_k127_1635730_3 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001206 269.0
DYD3_k127_1635730_4 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000003981 223.0
DYD3_k127_1635730_5 Protein of unknown function (DUF3641) - - - 0.0000000000000000000000000000000000000000000000000001223 188.0
DYD3_k127_1635730_6 protein conserved in bacteria K09931 - - 0.00000000000000000000000000000000000000002405 160.0
DYD3_k127_1635730_7 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000001699 105.0
DYD3_k127_1640224_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 3.056e-254 797.0
DYD3_k127_1640224_1 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 4.247e-218 694.0
DYD3_k127_1640224_10 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000008302 183.0
DYD3_k127_1640224_11 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000001081 139.0
DYD3_k127_1640224_12 - - - - 0.00000000000000000000000000002262 125.0
DYD3_k127_1640224_13 PFAM glutathione-dependent formaldehyde-activating GFA - - - 0.00000000000000000000000000002266 117.0
DYD3_k127_1640224_14 Signal peptide protein - - - 0.00000000000007142 76.0
DYD3_k127_1640224_15 - - - - 0.00007828 46.0
DYD3_k127_1640224_16 NADPH-dependent FMN reductase K03809 - 1.6.5.2 0.0003638 46.0
DYD3_k127_1640224_2 Na+ dependent nucleoside transporter N-terminus K03317 GO:0003674,GO:0005215,GO:0005337,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0015858,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:1901264,GO:1901505,GO:1901642 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 478.0
DYD3_k127_1640224_3 SBF-like CPA transporter family (DUF4137) K03453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006433 381.0
DYD3_k127_1640224_4 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009143 379.0
DYD3_k127_1640224_5 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 348.0
DYD3_k127_1640224_6 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009539 278.0
DYD3_k127_1640224_7 Activator of Hsp90 ATPase 1 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009016 269.0
DYD3_k127_1640224_8 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000004625 243.0
DYD3_k127_1640224_9 KR domain - - - 0.00000000000000000000000000000000000000000000000000000007389 206.0
DYD3_k127_1642780_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 1.652e-210 669.0
DYD3_k127_1642780_1 Belongs to the thiolase family K00626 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 604.0
DYD3_k127_1642780_2 PFAM Short-chain dehydrogenase reductase SDR K00023 - 1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005941 398.0
DYD3_k127_1642780_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 360.0
DYD3_k127_1642780_4 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004032 319.0
DYD3_k127_1642780_5 ZIP Zinc transporter K16267 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008661 307.0
DYD3_k127_1642780_6 Nad-dependent epimerase dehydratase K22025 - 1.1.1.410 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 301.0
DYD3_k127_1642780_7 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000000000000000005101 241.0
DYD3_k127_1692594_0 Belongs to the DEAD box helicase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 460.0
DYD3_k127_1692594_1 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005772 312.0
DYD3_k127_1692594_2 HpcH/HpaI aldolase/citrate lyase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 305.0
DYD3_k127_1692594_3 COG1512 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000191 259.0
DYD3_k127_1692594_4 TspO/MBR family K05770 - - 0.000000000000000000000000000000000000000000000000003016 187.0
DYD3_k127_1692594_5 TPM domain - - - 0.00000000000000000000000000000000000000000002363 174.0
DYD3_k127_1692594_6 - - - - 0.000000000000000000000000000000000000000000772 160.0
DYD3_k127_1692594_7 Belongs to the UPF0178 family K09768 - - 0.000000004588 57.0
DYD3_k127_1709482_0 GMC oxidoreductase K00108 - 1.1.99.1 2.474e-245 766.0
DYD3_k127_1709482_1 Conserved carboxylase domain K01571 - 4.1.1.3 6.156e-232 736.0
DYD3_k127_1709482_2 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007416 464.0
DYD3_k127_1709482_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 331.0
DYD3_k127_1709482_4 Belongs to the TPP enzyme family K03852 - 2.3.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 302.0
DYD3_k127_1709482_5 short-chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001217 271.0
DYD3_k127_1709482_6 Transcriptional regulator K02624 - - 0.000000000000000000000000000000000000000000000000000000000000000007861 233.0
DYD3_k127_1709482_7 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000003703 154.0
DYD3_k127_1709482_8 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000007108 136.0
DYD3_k127_1720762_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 1.621e-292 909.0
DYD3_k127_1720762_1 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 5.006e-197 640.0
DYD3_k127_1720762_2 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004982 454.0
DYD3_k127_1720762_3 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 423.0
DYD3_k127_1720762_4 Vacuole effluxer Atg22 like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 298.0
DYD3_k127_1720762_5 transport system periplasmic component K01989 - - 0.000000000000000000000000000000000000000000000000003162 199.0
DYD3_k127_1720762_6 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000379 188.0
DYD3_k127_1720762_7 von Willebrand factor type A (vWA) domain K07161 - - 0.0000000000002244 76.0
DYD3_k127_1727700_0 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 496.0
DYD3_k127_1727700_1 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 434.0
DYD3_k127_1727700_10 MlrC C-terminus - - - 0.000000004514 57.0
DYD3_k127_1727700_2 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006741 387.0
DYD3_k127_1727700_3 Catechol dioxygenase N terminus K03381 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006725,GO:0008150,GO:0008152,GO:0008199,GO:0009056,GO:0009712,GO:0009987,GO:0016491,GO:0016701,GO:0016702,GO:0018576,GO:0018958,GO:0019114,GO:0019336,GO:0019439,GO:0019614,GO:0019615,GO:0042952,GO:0043167,GO:0043169,GO:0044237,GO:0044248,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901575,GO:1901615,GO:1901616 1.13.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 344.0
DYD3_k127_1727700_4 Inner membrane protein involved in colicin E2 resistance K06143 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 335.0
DYD3_k127_1727700_5 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007525 323.0
DYD3_k127_1727700_6 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 294.0
DYD3_k127_1727700_7 Domain of unknown function (DUF1993) K09983 - - 0.00000000000000000000000000000000000000000000000000000000000000000002297 236.0
DYD3_k127_1727700_8 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000005041 224.0
DYD3_k127_1727700_9 DUF636 domain protein - - - 0.00000000000000000000000008691 114.0
DYD3_k127_1743798_0 Belongs to the glutamate synthase family - - - 3.856e-243 758.0
DYD3_k127_1743798_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 553.0
DYD3_k127_1743798_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004143 463.0
DYD3_k127_1743798_3 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 317.0
DYD3_k127_1743798_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000213 218.0
DYD3_k127_1743798_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000005796 168.0
DYD3_k127_1743798_6 transport system small permease component - - - 0.0000000000000000000000000000000000000000225 160.0
DYD3_k127_1762539_0 FAD dependent oxidoreductase - - - 9.664e-239 748.0
DYD3_k127_1762539_1 aminopeptidase N K01256 - 3.4.11.2 1.364e-209 682.0
DYD3_k127_1762539_10 DoxX K15977 - - 0.000000000000000000000004459 107.0
DYD3_k127_1762539_11 YXWGXW repeat (2 copies) - - - 0.0000000000000000000006712 98.0
DYD3_k127_1762539_2 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 428.0
DYD3_k127_1762539_3 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005564 385.0
DYD3_k127_1762539_4 Aldo/keto reductase family K05275 - 1.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000709 320.0
DYD3_k127_1762539_5 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 335.0
DYD3_k127_1762539_6 Sir2 family K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 316.0
DYD3_k127_1762539_7 Domain of unknown function (DUF1932) - - - 0.0000000000000000000000000000000000000000000000000000000000000002266 231.0
DYD3_k127_1762539_8 Glutathione peroxidase K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000005088 211.0
DYD3_k127_1762539_9 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000003442 196.0
DYD3_k127_1792848_0 Phosphoglucomutase K15778 - 5.4.2.2,5.4.2.8 6.29e-204 651.0
DYD3_k127_1792848_1 ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 548.0
DYD3_k127_1792848_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003467 483.0
DYD3_k127_1792848_3 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 499.0
DYD3_k127_1792848_4 alpha/beta hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 355.0
DYD3_k127_1792848_5 heptosyltransferase II K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007119 353.0
DYD3_k127_1792848_6 SnoaL-like domain - - - 0.0000000000000000000000000000000000002654 145.0
DYD3_k127_1792848_7 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000002155 140.0
DYD3_k127_1792848_8 Domain of unknown function (DUF4870) - - - 0.00000000000000000000000003375 114.0
DYD3_k127_1792848_9 Zinc-finger domain - - - 0.00000000000000000009736 101.0
DYD3_k127_1809255_0 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 533.0
DYD3_k127_1809255_1 III protein, CoA-transferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 509.0
DYD3_k127_1809255_2 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 398.0
DYD3_k127_1809255_3 dienelactone hydrolase K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000001495 269.0
DYD3_k127_1809255_4 COG0350 Methylated DNA-protein cysteine methyltransferase K00567 - 2.1.1.63 0.000000000000000000000000000000000000000000001235 170.0
DYD3_k127_1809255_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000002258 138.0
DYD3_k127_1809255_6 TIGRFAM Tyrosine recombinase XerD K04763 - - 0.000000000000000000001393 101.0
DYD3_k127_1820563_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K18356 - 1.2.1.58,1.2.7.1 1.514e-213 672.0
DYD3_k127_1820563_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K18355 - 1.2.1.58,1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 588.0
DYD3_k127_1820563_2 VWA domain containing CoxE-like protein K09989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007146 567.0
DYD3_k127_1820563_3 Pyridine nucleotide-disulphide oxidoreductase K18359 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002865 464.0
DYD3_k127_1820563_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 355.0
DYD3_k127_1820563_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K18357 - 1.2.1.58 0.0000000000000000000000000000000000000000000000000000000000000000000000000003933 259.0
DYD3_k127_1820563_6 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000001071 210.0
DYD3_k127_1820563_7 - - - - 0.00000000000000000000000000000000000000000006364 170.0
DYD3_k127_1820563_8 4Fe-4S binding domain K18358 - 1.2.1.58 0.00000000000000000000000000000000000000006599 153.0
DYD3_k127_1870242_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 1.27e-214 692.0
DYD3_k127_1870242_1 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 580.0
DYD3_k127_1870242_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 554.0
DYD3_k127_1870242_3 Universal stress protein family - - - 0.0000000000000000000000000000000000000000007724 164.0
DYD3_k127_1870242_4 OPT oligopeptide transporter protein - - - 0.0000000000006623 70.0
DYD3_k127_1891660_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 417.0
DYD3_k127_1891660_1 Catalyzes the carbon skeleton rearrangement of L- glutamate to L-threo-3-methylaspartate ((2S,3S)-3- methylaspartate) K01846,K19268 - 5.4.99.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 411.0
DYD3_k127_1891660_2 TIGRFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006473 398.0
DYD3_k127_1891660_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 313.0
DYD3_k127_1891660_4 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000006085 225.0
DYD3_k127_1891660_5 Catalyzes the carbon skeleton rearrangement of L- glutamate to L-threo-3-methylaspartate ((2S,3S)-3- methylaspartate) K01846 - 5.4.99.1 0.0000000000000000000000000000000000000000000002482 175.0
DYD3_k127_1891660_6 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000008388 105.0
DYD3_k127_1911872_0 Histidine kinase-like ATPases - - - 7.816e-257 853.0
DYD3_k127_1911872_1 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 7.487e-203 644.0
DYD3_k127_1911872_10 deoxyhypusine monooxygenase activity K05384,K05386 - - 0.00000000000000000000000000000000000000000000000000004845 195.0
DYD3_k127_1911872_11 MaoC like domain - - - 0.00000000000000000000000000000000000000000000000000006634 190.0
DYD3_k127_1911872_12 PIN domain - - - 0.0000000000000000000000000000000000000000003254 166.0
DYD3_k127_1911872_13 Protein of unknown function (DUF1232) - - - 0.000000000000000000000000000000000000438 144.0
DYD3_k127_1911872_14 phosphorelay signal transduction system K11443 - - 0.00000000000000000000000000000000000481 153.0
DYD3_k127_1911872_15 Alpha beta hydrolase - - - 0.00000000000000000000000000000003844 129.0
DYD3_k127_1911872_17 - - - - 0.000000000002267 73.0
DYD3_k127_1911872_18 - - - - 0.00000000008337 75.0
DYD3_k127_1911872_2 PFAM Sulfatase K01130 - 3.1.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 562.0
DYD3_k127_1911872_3 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005101 516.0
DYD3_k127_1911872_4 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 488.0
DYD3_k127_1911872_5 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003816 472.0
DYD3_k127_1911872_6 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007648 423.0
DYD3_k127_1911872_7 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 296.0
DYD3_k127_1911872_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004677 275.0
DYD3_k127_1911872_9 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000002649 227.0
DYD3_k127_1942817_0 DNA helicase K03657 - 3.6.4.12 3.908e-296 925.0
DYD3_k127_1942817_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 9.121e-231 723.0
DYD3_k127_1942817_10 membrane - - - 0.00000000000000000000000000000000001031 142.0
DYD3_k127_1942817_2 Soluble lytic murein transglycosylase L domain K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004356 574.0
DYD3_k127_1942817_3 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 434.0
DYD3_k127_1942817_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 434.0
DYD3_k127_1942817_5 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 400.0
DYD3_k127_1942817_6 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 354.0
DYD3_k127_1942817_7 epimerase dehydratase K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 325.0
DYD3_k127_1942817_8 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.0000000000000000000000000000000000000000000000006152 183.0
DYD3_k127_1942817_9 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000003237 177.0
DYD3_k127_1976745_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0 1085.0
DYD3_k127_1976745_1 SMART alpha amylase catalytic sub domain K01236 - 3.2.1.141 2.671e-234 743.0
DYD3_k127_1976745_2 protein conserved in bacteria K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 498.0
DYD3_k127_1976745_3 surface antigen K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 393.0
DYD3_k127_1976745_4 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 GO:0000287,GO:0003674,GO:0003824,GO:0004805,GO:0005488,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0033554,GO:0034637,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0046872,GO:0050896,GO:0051716,GO:0070413,GO:0070415,GO:0070417,GO:0071704,GO:1901576 3.1.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000001051 270.0
DYD3_k127_1976745_5 SMART alpha amylase catalytic sub domain K00705,K06044 - 2.4.1.25,5.4.99.15 0.00000000001313 77.0
DYD3_k127_1984963_0 Periplasmic binding protein K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 542.0
DYD3_k127_1984963_1 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007483 396.0
DYD3_k127_1984963_2 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009882 384.0
DYD3_k127_1984963_3 COG0006 Xaa-Pro aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 302.0
DYD3_k127_1984963_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001165 290.0
DYD3_k127_1984963_5 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009003 257.0
DYD3_k127_1991695_0 TIGRFAM formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 3.305e-307 951.0
DYD3_k127_1991695_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00122 - 1.17.1.9 2.459e-260 812.0
DYD3_k127_1991695_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006372 357.0
DYD3_k127_1991695_3 PFAM AMP-dependent synthetase and ligase K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 342.0
DYD3_k127_1991695_4 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000000000000000003497 130.0
DYD3_k127_1991695_5 Bacterial antitoxin of type II TA system, VapB - - - 0.0000000002884 63.0
DYD3_k127_2020646_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006646 508.0
DYD3_k127_2020646_1 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007036 465.0
DYD3_k127_2020646_10 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.00000000000000000000000000000005338 135.0
DYD3_k127_2020646_11 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.00000000000000000000000000000009443 133.0
DYD3_k127_2020646_12 seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing K05808 - - 0.000000000000000000000000000003506 136.0
DYD3_k127_2020646_2 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003165 399.0
DYD3_k127_2020646_3 AsmA family K07289 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 414.0
DYD3_k127_2020646_4 A G-specific K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 390.0
DYD3_k127_2020646_5 Lipopolysaccharide export system ATP-binding protein K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 366.0
DYD3_k127_2020646_6 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003521 333.0
DYD3_k127_2020646_7 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 335.0
DYD3_k127_2020646_8 PTS IIA-like nitrogen-regulatory protein PtsN K02806 - - 0.000000000000000000000000000000000000000000000000000006483 214.0
DYD3_k127_2020646_9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000000414 176.0
DYD3_k127_2091994_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 2.831e-237 750.0
DYD3_k127_2091994_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 6.688e-229 731.0
DYD3_k127_2091994_10 Glutaredoxin - - - 0.00000000000000000000000000000000000000000000000004505 180.0
DYD3_k127_2091994_11 3'-5' exonuclease - - - 0.0000000000000000000000000000000000000000000000002813 185.0
DYD3_k127_2091994_12 NUDIX domain - - - 0.0000000000000000000000000000000000000000000001369 173.0
DYD3_k127_2091994_13 HNH nucleases - - - 0.0000000000000000000000000000000000004048 142.0
DYD3_k127_2091994_14 PIN domain - - - 0.000000000000000000000000000000000511 142.0
DYD3_k127_2091994_15 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000008348 124.0
DYD3_k127_2091994_16 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000001476 98.0
DYD3_k127_2091994_17 Phospholipase/Carboxylesterase K06999 - - 0.00000000007797 67.0
DYD3_k127_2091994_18 positive regulation of growth - GO:0006417,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0040007,GO:0045727,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:2000112 - 0.0000000001388 64.0
DYD3_k127_2091994_19 positive regulation of growth - - - 0.0000002568 61.0
DYD3_k127_2091994_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 9.06e-219 689.0
DYD3_k127_2091994_21 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.00004768 52.0
DYD3_k127_2091994_3 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005962 602.0
DYD3_k127_2091994_4 4Fe-4S ferredoxin, iron-sulfur binding K18929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006736 559.0
DYD3_k127_2091994_5 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 522.0
DYD3_k127_2091994_6 Dimerisation domain of Zinc Transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 336.0
DYD3_k127_2091994_7 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004719 257.0
DYD3_k127_2091994_8 SMART metal-dependent phosphohydrolase, HD region K01139 - 2.7.6.5,3.1.7.2 0.000000000000000000000000000000000000000000000000000000000000002338 222.0
DYD3_k127_2091994_9 Protein of unknown function (DUF2889) - - - 0.000000000000000000000000000000000000000000000000000000000002564 218.0
DYD3_k127_2126594_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.309e-284 887.0
DYD3_k127_2126594_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 2.682e-200 631.0
DYD3_k127_2126594_10 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 309.0
DYD3_k127_2126594_11 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007643 319.0
DYD3_k127_2126594_12 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 286.0
DYD3_k127_2126594_13 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000002661 248.0
DYD3_k127_2126594_14 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000001265 194.0
DYD3_k127_2126594_15 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000009231 166.0
DYD3_k127_2126594_16 Lipopolysaccharide assembly protein A domain K08992 - - 0.00000000000000000004719 93.0
DYD3_k127_2126594_17 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000001978 67.0
DYD3_k127_2126594_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009434 553.0
DYD3_k127_2126594_3 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 536.0
DYD3_k127_2126594_4 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 492.0
DYD3_k127_2126594_5 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 473.0
DYD3_k127_2126594_6 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 456.0
DYD3_k127_2126594_7 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 415.0
DYD3_k127_2126594_8 TIGRFAM rfaE bifunctional protein K03272,K21344 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004399 393.0
DYD3_k127_2126594_9 3-5 exonuclease K07501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 367.0
DYD3_k127_2173510_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01583 - 4.1.1.19 0.0 1075.0
DYD3_k127_2173510_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 3.421e-213 674.0
DYD3_k127_2173510_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 356.0
DYD3_k127_2173510_3 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009805 314.0
DYD3_k127_2173510_4 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000001174 263.0
DYD3_k127_2173510_5 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000001731 236.0
DYD3_k127_2173510_6 Protein of unknown function (DUF3579) - - - 0.00000000000000000000000001174 115.0
DYD3_k127_2173510_7 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000000000000000009254 103.0
DYD3_k127_2173510_8 PIN domain - - - 0.000000000000000000000825 101.0
DYD3_k127_2173510_9 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00004851 50.0
DYD3_k127_220820_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1469.0
DYD3_k127_220820_1 Oxidoreductase, FAD-binding family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 481.0
DYD3_k127_220820_2 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 333.0
DYD3_k127_220820_3 COG0477 Permeases of the major facilitator superfamily K07552 - - 0.0000000000000000000000000000000000000000000000000000000000002197 227.0
DYD3_k127_220820_4 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000002303 174.0
DYD3_k127_2214521_0 Dehydratase family K13875 - 4.2.1.25 1.13e-308 961.0
DYD3_k127_2214521_1 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 1.625e-227 731.0
DYD3_k127_2214521_2 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 606.0
DYD3_k127_2214521_3 Binding-protein-dependent transport system inner membrane component K02025,K10237 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 515.0
DYD3_k127_2214521_4 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000458 500.0
DYD3_k127_2214521_5 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 476.0
DYD3_k127_2214521_6 Enoyl-(Acyl carrier protein) reductase K21883 - 1.1.1.401 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 330.0
DYD3_k127_2214521_7 Tripartite ATP-independent periplasmic transporter - - - 0.000000000000000000000000000000000000000000000000000001717 200.0
DYD3_k127_2214521_8 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000236 83.0
DYD3_k127_2214521_9 Domain of unknown function (DUF4189) - - - 0.00004083 55.0
DYD3_k127_22239_0 3-hydroxyacyl-coa dehydrogenase K07516 - 1.1.1.35 4.21e-274 859.0
DYD3_k127_22239_1 Aldehyde dehydrogenase K00128,K00130 - 1.2.1.3,1.2.1.8 3.82e-207 656.0
DYD3_k127_22239_10 13-prostaglandin reductase activity K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 417.0
DYD3_k127_22239_11 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 397.0
DYD3_k127_22239_12 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 352.0
DYD3_k127_22239_13 Acyl-CoA dehydrogenase, middle domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 351.0
DYD3_k127_22239_14 alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 346.0
DYD3_k127_22239_15 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009664 321.0
DYD3_k127_22239_16 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005096 329.0
DYD3_k127_22239_17 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 300.0
DYD3_k127_22239_18 Class II Aldolase and Adducin N-terminal domain K22130 - 4.1.1.104 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 300.0
DYD3_k127_22239_19 Carboxyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005558 274.0
DYD3_k127_22239_2 CoA binding domain - - - 1.118e-206 665.0
DYD3_k127_22239_20 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008227 271.0
DYD3_k127_22239_21 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001285 230.0
DYD3_k127_22239_22 RDD family - - - 0.000000000000000000000000000000000000000007817 158.0
DYD3_k127_22239_23 ABC transporter substrate binding protein - - - 0.0000000000000000000000000000000000009565 150.0
DYD3_k127_22239_24 Thioesterase superfamily protein - - - 0.00000000000000000000001767 113.0
DYD3_k127_22239_3 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005638 600.0
DYD3_k127_22239_4 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006286 567.0
DYD3_k127_22239_5 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 512.0
DYD3_k127_22239_6 PFAM type III effector Hrp-dependent outers K21948 - 2.7.1.217 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004879 511.0
DYD3_k127_22239_7 Psort location Cytoplasmic, score 7.50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 504.0
DYD3_k127_22239_8 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00001,K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 496.0
DYD3_k127_22239_9 Dehydrogenase K08319 - 1.1.1.411 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005229 421.0
DYD3_k127_2237900_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 554.0
DYD3_k127_2237900_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 430.0
DYD3_k127_2237900_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K07678 - 2.7.13.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 421.0
DYD3_k127_2237900_3 Histidine kinase K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002722 297.0
DYD3_k127_2237900_4 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000174 203.0
DYD3_k127_2237900_5 PFAM response regulator receiver K11443 - - 0.000000000000000000000000000001422 128.0
DYD3_k127_2237900_6 - - - - 0.0000009226 53.0
DYD3_k127_2298658_0 PFAM amidohydrolase 2 K10220,K14333 - 4.1.1.46,4.2.1.83 9.268e-201 627.0
DYD3_k127_2298658_1 4-hydroxybenzoate 3-monooxygenase K00481 - 1.14.13.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 582.0
DYD3_k127_2298658_2 Pfam:Methyltransf_6 K10218 - 4.1.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009431 312.0
DYD3_k127_2298658_3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000004109 271.0
DYD3_k127_2345129_0 His Kinase A (phosphoacceptor) domain - - - 6.674e-219 689.0
DYD3_k127_2345129_1 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 601.0
DYD3_k127_2345129_2 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007932 366.0
DYD3_k127_2345129_3 benzoyl-CoA reductase K04113 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005472 306.0
DYD3_k127_2345129_4 ferredoxin - - - 0.00000000000000000000000000000000000000123 152.0
DYD3_k127_2438523_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 7.009e-220 688.0
DYD3_k127_2438523_1 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005483 451.0
DYD3_k127_2438523_3 Putative peptidoglycan binding domain - - - 0.000007657 57.0
DYD3_k127_2460261_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 587.0
DYD3_k127_2460261_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 444.0
DYD3_k127_2460261_10 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000000000002163 211.0
DYD3_k127_2460261_11 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000004727 201.0
DYD3_k127_2460261_12 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000000000002693 189.0
DYD3_k127_2460261_13 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000000000002488 178.0
DYD3_k127_2460261_14 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000000001786 177.0
DYD3_k127_2460261_15 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000000000002054 160.0
DYD3_k127_2460261_16 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000002962 146.0
DYD3_k127_2460261_17 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000006872 136.0
DYD3_k127_2460261_18 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000000000003211 126.0
DYD3_k127_2460261_19 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000003279 113.0
DYD3_k127_2460261_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 334.0
DYD3_k127_2460261_20 Ribosomal protein L30 K02907 - - 0.00000000000000000000653 94.0
DYD3_k127_2460261_21 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000002456 79.0
DYD3_k127_2460261_22 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000002668 78.0
DYD3_k127_2460261_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 302.0
DYD3_k127_2460261_4 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 301.0
DYD3_k127_2460261_5 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 294.0
DYD3_k127_2460261_6 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004468 287.0
DYD3_k127_2460261_7 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004066 254.0
DYD3_k127_2460261_8 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006521 246.0
DYD3_k127_2460261_9 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000001607 223.0
DYD3_k127_2474928_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 1.304e-252 787.0
DYD3_k127_2474928_1 Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family K03455 - - 2.988e-223 711.0
DYD3_k127_2474928_10 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 - 3.1.3.45 0.000000000000000000000000003245 114.0
DYD3_k127_2474928_11 STAS domain K07122 - - 0.000000000006365 77.0
DYD3_k127_2474928_2 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 415.0
DYD3_k127_2474928_3 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 408.0
DYD3_k127_2474928_4 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 404.0
DYD3_k127_2474928_5 ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002046 378.0
DYD3_k127_2474928_6 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005381 363.0
DYD3_k127_2474928_7 VacJ family lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007471 267.0
DYD3_k127_2474928_8 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000005386 220.0
DYD3_k127_2474928_9 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.0000000000000000000000000000000000000000000000000005534 195.0
DYD3_k127_2480388_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000001721 261.0
DYD3_k127_2480388_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000001242 253.0
DYD3_k127_2480388_2 Cytidylyltransferase-like K21345 - 2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000255 224.0
DYD3_k127_2480388_3 periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000000000000000000000000000002402 203.0
DYD3_k127_2480388_4 nucleic acid phosphodiester bond hydrolysis K07460 - - 0.00000000000000000000000000006884 119.0
DYD3_k127_2480388_5 HIRAN - - - 0.0000000000000000000000000002946 122.0
DYD3_k127_2480388_6 - - - - 0.00000000000000000000000004065 120.0
DYD3_k127_2480388_7 Domain of unknown function (DUF4870) - - - 0.00000000000000000000219 98.0
DYD3_k127_2511535_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 6.301e-302 951.0
DYD3_k127_2511535_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.036e-245 767.0
DYD3_k127_2511535_2 Zn_pept - - - 1.297e-232 733.0
DYD3_k127_2511535_3 asparaginyl-tRNA synthetase K01893 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.22 2.56e-221 698.0
DYD3_k127_2511535_4 Serine aminopeptidase, S33 K01253,K08253 - 2.7.10.2,3.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 573.0
DYD3_k127_2511535_5 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 503.0
DYD3_k127_2511535_6 Transferase hexapeptide repeat containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007013 256.0
DYD3_k127_2511535_7 membrane - - - 0.00000000000000000002164 96.0
DYD3_k127_2550327_0 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 0.0 1091.0
DYD3_k127_2550327_1 Glucose inhibited division protein A K03388,K16885 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.215e-208 657.0
DYD3_k127_2550327_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006888 469.0
DYD3_k127_2550327_3 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 374.0
DYD3_k127_2550327_4 4Fe-4S dicluster domain K16887 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 314.0
DYD3_k127_2550327_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000008357 211.0
DYD3_k127_2550327_6 amidohydrolase K03392,K07045 - 4.1.1.45 0.000000000000000000000003261 103.0
DYD3_k127_2561029_0 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 493.0
DYD3_k127_2561029_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 485.0
DYD3_k127_2561029_2 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001049 259.0
DYD3_k127_2561029_3 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000006766 166.0
DYD3_k127_2561029_4 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000000003275 166.0
DYD3_k127_2561029_5 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000001037 116.0
DYD3_k127_2561596_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 7.676e-207 656.0
DYD3_k127_2561596_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 541.0
DYD3_k127_2561596_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 514.0
DYD3_k127_2561596_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 512.0
DYD3_k127_2561596_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 366.0
DYD3_k127_2561596_5 Histidine kinase K08082 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 294.0
DYD3_k127_2561596_6 LytTr DNA-binding domain K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005087 289.0
DYD3_k127_2561596_7 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000000001353 266.0
DYD3_k127_2561596_8 uroporphyrinogen III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000004673 190.0
DYD3_k127_2561596_9 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000000000255 171.0
DYD3_k127_2562362_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 2.241e-259 816.0
DYD3_k127_2562362_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 9.891e-228 711.0
DYD3_k127_2562362_10 Protein of unknown function (DUF3460) - - - 0.000000006694 62.0
DYD3_k127_2562362_2 also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity K01659 - 2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 623.0
DYD3_k127_2562362_3 2-methylcitrate dehydratase K01720 - 4.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 552.0
DYD3_k127_2562362_4 L-malate dehydrogenase activity K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0030312,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009206 480.0
DYD3_k127_2562362_5 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K01841,K03417 - 4.1.3.30,5.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007064 446.0
DYD3_k127_2562362_6 succinate dehydrogenase fumarate reductase K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 414.0
DYD3_k127_2562362_7 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.00000000000000000000000000000002231 130.0
DYD3_k127_2562362_8 Succinate dehydrogenase, hydrophobic K00242 - - 0.0000000000000000000000000000146 136.0
DYD3_k127_2562362_9 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000006231 74.0
DYD3_k127_2571127_0 Cys/Met metabolism PLP-dependent enzyme K01739,K01758,K01760,K17217 - 2.5.1.48,4.4.1.1,4.4.1.2,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 539.0
DYD3_k127_2571127_1 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005118 519.0
DYD3_k127_2571127_10 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000009155 226.0
DYD3_k127_2571127_11 SMART cyclic nucleotide-binding K10914 - - 0.0000000000000000000000000000000000000000000000004391 189.0
DYD3_k127_2571127_12 PFAM Acetyltransferase (GNAT) family K00657 - 2.3.1.57 0.000000000000000000000000000000000003586 145.0
DYD3_k127_2571127_13 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.0000004441 62.0
DYD3_k127_2571127_14 - - - - 0.000008845 55.0
DYD3_k127_2571127_2 oxidoreductase FAD NAD(P)-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004673 471.0
DYD3_k127_2571127_3 AMP-binding enzyme C-terminal domain K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 414.0
DYD3_k127_2571127_4 Amidohydrolase K10220 - 4.2.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 403.0
DYD3_k127_2571127_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 342.0
DYD3_k127_2571127_6 Histidine kinase K07673 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009625 334.0
DYD3_k127_2571127_7 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002923 282.0
DYD3_k127_2571127_8 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002935 279.0
DYD3_k127_2571127_9 response regulator K07684 - - 0.0000000000000000000000000000000000000000000000000000000000000000003972 250.0
DYD3_k127_2595781_0 AMP-binding enzyme C-terminal domain K00666 - - 6.314e-267 830.0
DYD3_k127_2595781_1 PFAM Acyl-CoA dehydrogenase K00249 - 1.3.8.7 1.906e-201 632.0
DYD3_k127_2595781_10 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002173 258.0
DYD3_k127_2595781_11 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000001273 233.0
DYD3_k127_2595781_12 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000001744 161.0
DYD3_k127_2595781_2 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 590.0
DYD3_k127_2595781_3 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007229 551.0
DYD3_k127_2595781_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 486.0
DYD3_k127_2595781_5 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007282 444.0
DYD3_k127_2595781_6 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 379.0
DYD3_k127_2595781_7 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 372.0
DYD3_k127_2595781_8 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002471 278.0
DYD3_k127_2595781_9 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002865 276.0
DYD3_k127_2621939_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 1.627e-223 707.0
DYD3_k127_2621939_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 377.0
DYD3_k127_2621939_2 Thioesterase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 340.0
DYD3_k127_2621939_3 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 302.0
DYD3_k127_2621939_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006884 280.0
DYD3_k127_2621939_5 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004909 266.0
DYD3_k127_2621939_6 endonuclease III K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000399 248.0
DYD3_k127_2621939_7 Adenylate cyclase - - - 0.0000000000000000000000000000000000002818 143.0
DYD3_k127_2621939_8 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000005058 102.0
DYD3_k127_2709637_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006993 471.0
DYD3_k127_2709637_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 425.0
DYD3_k127_2709637_2 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 301.0
DYD3_k127_2709637_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000004496 167.0
DYD3_k127_2709637_4 cellulose binding - - - 0.00000000000000000000000000000001075 143.0
DYD3_k127_2709637_5 Periplasmic Protein - - - 0.0000000000000000000002893 102.0
DYD3_k127_2709637_6 ThiS family K03154 - - 0.0000000000000001467 84.0
DYD3_k127_2709637_7 periplasmic protein - - - 0.000000001082 70.0
DYD3_k127_2709637_9 Bacterial Ig-like domain - - - 0.00005576 55.0
DYD3_k127_2730900_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008683 582.0
DYD3_k127_2730900_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 481.0
DYD3_k127_2730900_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 325.0
DYD3_k127_2730900_3 Major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007351 257.0
DYD3_k127_2730900_4 Rubrerythrin - - - 0.00000000000000001667 90.0
DYD3_k127_2745586_0 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007917 404.0
DYD3_k127_2745586_1 Glycine zipper - - - 0.0000000000000000000000000000000000000000000000000000000000009584 217.0
DYD3_k127_2745586_2 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000002982 218.0
DYD3_k127_2745586_3 response regulator - - - 0.00000000000000000000002686 99.0
DYD3_k127_2745586_4 response regulator - - - 0.0000000000000000000004572 102.0
DYD3_k127_2745586_5 Hsp33 protein K04083 - - 0.00000000000000000002159 97.0
DYD3_k127_2799415_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 2.896e-206 652.0
DYD3_k127_2799415_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 7.38e-199 630.0
DYD3_k127_2799415_10 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 284.0
DYD3_k127_2799415_11 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005696 285.0
DYD3_k127_2799415_12 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000000000005936 266.0
DYD3_k127_2799415_13 peptidase, M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001806 266.0
DYD3_k127_2799415_14 Pyrimidine 5''-nucleotidase K07025 - - 0.0000000000000000000000000000000000000000000000000000000000000000003844 236.0
DYD3_k127_2799415_15 Catalyzes the synthesis of activated sulfate K00860,K00958 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000009446 224.0
DYD3_k127_2799415_16 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000001377 219.0
DYD3_k127_2799415_17 Protein of unknown function, DUF484 K09921 - - 0.00000000000000000000000000000000000000000000000000000000000159 216.0
DYD3_k127_2799415_18 Bacterial regulatory proteins, tetR family K05501 - - 0.00000000000000000000000000000000000000000000000000000000001 212.0
DYD3_k127_2799415_19 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000000000000000000000000000000000000000002016 217.0
DYD3_k127_2799415_2 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006731 469.0
DYD3_k127_2799415_20 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000000000004861 190.0
DYD3_k127_2799415_21 transcriptional - - - 0.00000000000000000000000000000000000000002117 154.0
DYD3_k127_2799415_22 Bacterial SH3 domain - - - 0.000000000000000000000000000000000000003018 152.0
DYD3_k127_2799415_23 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000004456 147.0
DYD3_k127_2799415_24 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000002701 113.0
DYD3_k127_2799415_25 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 0.0000000000000001585 80.0
DYD3_k127_2799415_3 Cobalamin synthesis protein cobW C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 458.0
DYD3_k127_2799415_4 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 429.0
DYD3_k127_2799415_5 Type II secretion system (T2SS), protein F K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 410.0
DYD3_k127_2799415_6 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 394.0
DYD3_k127_2799415_7 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 359.0
DYD3_k127_2799415_8 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 340.0
DYD3_k127_2799415_9 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009741 321.0
DYD3_k127_2808205_0 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 431.0
DYD3_k127_2808205_1 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004596 280.0
DYD3_k127_2808205_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000001693 254.0
DYD3_k127_2808205_3 Tetratricopeptide repeat K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000002466 248.0
DYD3_k127_2808205_4 Periplasmic protein thiol K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000001502 230.0
DYD3_k127_2808205_5 hydroperoxide reductase activity - - - 0.0000000000000000000000000000000000001701 154.0
DYD3_k127_2808205_6 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000007994 152.0
DYD3_k127_2829029_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1253.0
DYD3_k127_2829029_1 Glycine cleavage system T protein K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 434.0
DYD3_k127_2829029_2 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 329.0
DYD3_k127_2908517_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004175 514.0
DYD3_k127_2908517_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009337 503.0
DYD3_k127_2908517_2 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 458.0
DYD3_k127_2908517_3 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 377.0
DYD3_k127_2908517_4 GHMP kinases N terminal domain K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 309.0
DYD3_k127_2908517_5 Ribosomal L25p family K02897 - - 0.00000000000000000000000000000000000000000000000000000000000000000006603 238.0
DYD3_k127_2908517_6 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000000000000000005927 231.0
DYD3_k127_2908517_8 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.0000000000002194 72.0
DYD3_k127_2908517_9 PFAM AMP-dependent synthetase K01895 - 6.2.1.1 0.000000001039 59.0
DYD3_k127_2954416_0 Belongs to the peptidase S16 family - - - 2.026e-260 826.0
DYD3_k127_2954416_1 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000001014 159.0
DYD3_k127_3041312_0 COG0474 Cation transport ATPase - - - 0.0 1154.0
DYD3_k127_3041312_1 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 6.914e-315 980.0
DYD3_k127_3041312_2 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 565.0
DYD3_k127_3041312_3 UPF0365 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 492.0
DYD3_k127_3041312_4 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000002443 188.0
DYD3_k127_3059074_0 ammonium transporter K03320,K06580 - - 7.586e-198 627.0
DYD3_k127_3059074_1 AMP-binding enzyme K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 588.0
DYD3_k127_3059074_2 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002346 257.0
DYD3_k127_3059074_3 plastoquinol--plastocyanin reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006455 250.0
DYD3_k127_3059074_4 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000000000002356 223.0
DYD3_k127_3059074_5 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000002829 146.0
DYD3_k127_3064274_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.824e-289 902.0
DYD3_k127_3064274_1 NADH Ubiquinone plastoquinone (Complex I) K12141 - - 2.04e-250 782.0
DYD3_k127_3064274_2 NADH ubiquinone plastoquinone (Complex I) - - - 1.596e-233 741.0
DYD3_k127_3064274_3 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005565 496.0
DYD3_k127_3064274_4 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 453.0
DYD3_k127_3064274_5 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006459 451.0
DYD3_k127_3064274_6 hydrogenase 4 membrane K12140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 307.0
DYD3_k127_3064274_7 PFAM CopG domain protein DNA-binding domain protein - - - 0.0000000000000000002788 90.0
DYD3_k127_3169190_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 5.308e-276 854.0
DYD3_k127_3169190_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 8.894e-252 786.0
DYD3_k127_3169190_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000000000000002165 136.0
DYD3_k127_3169190_11 ATP synthase I chain K02116 - - 0.00000000000000003621 91.0
DYD3_k127_3169190_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 430.0
DYD3_k127_3169190_3 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 396.0
DYD3_k127_3169190_4 Cobyrinic acid ac-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 352.0
DYD3_k127_3169190_5 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009723 329.0
DYD3_k127_3169190_6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 304.0
DYD3_k127_3169190_7 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000000000000004596 211.0
DYD3_k127_3169190_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000000000000000000000000000000000000000002744 160.0
DYD3_k127_3169190_9 ATP synthase delta (OSCP) subunit K02113 - - 0.00000000000000000000000000000000000000003355 162.0
DYD3_k127_3227149_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 3.672e-248 797.0
DYD3_k127_3227149_1 Ammonium Transporter K03320 - - 3.201e-209 660.0
DYD3_k127_3227149_10 Belongs to the P(II) protein family K04752 - - 0.0000000000000000000000000000000000000000000000000000000158 198.0
DYD3_k127_3227149_11 Cyclic nucleotide-binding - - - 0.0000000000000000000000000000000000007048 161.0
DYD3_k127_3227149_12 permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000005879 121.0
DYD3_k127_3227149_13 diguanylate cyclase - - - 0.00000001079 65.0
DYD3_k127_3227149_2 GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 498.0
DYD3_k127_3227149_3 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 456.0
DYD3_k127_3227149_4 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 374.0
DYD3_k127_3227149_5 CHASE3 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007096 352.0
DYD3_k127_3227149_6 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 323.0
DYD3_k127_3227149_7 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 323.0
DYD3_k127_3227149_8 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 293.0
DYD3_k127_3227149_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006947 281.0
DYD3_k127_3292505_0 Tripartite tricarboxylate transporter TctA family K07793 - - 1.251e-213 673.0
DYD3_k127_3292505_1 GTP-binding protein K06207 - - 5.221e-203 638.0
DYD3_k127_3292505_2 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007075 363.0
DYD3_k127_3292505_3 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000898 349.0
DYD3_k127_3292505_4 PFAM conserved K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 347.0
DYD3_k127_3292505_5 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 298.0
DYD3_k127_3292505_6 Protein of unknown function (DUF2721) - - - 0.00000000000000000000000615 110.0
DYD3_k127_3292505_7 Tripartite tricarboxylate transporter TctB family K07794 - - 0.000000000000000004603 98.0
DYD3_k127_3292505_8 Domain of unknown function (DUF4340) - - - 0.0000000007585 72.0
DYD3_k127_3292505_9 hydrolase activity, acting on ester bonds - - - 0.00001001 55.0
DYD3_k127_329655_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1257.0
DYD3_k127_329655_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1216.0
DYD3_k127_329655_10 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 451.0
DYD3_k127_329655_11 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004623 447.0
DYD3_k127_329655_12 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 431.0
DYD3_k127_329655_13 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 403.0
DYD3_k127_329655_14 Dolichyl-phosphate-mannose-protein mannosyltransferase K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 402.0
DYD3_k127_329655_15 General function prediction only K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 377.0
DYD3_k127_329655_16 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 375.0
DYD3_k127_329655_17 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 350.0
DYD3_k127_329655_18 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 361.0
DYD3_k127_329655_19 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 348.0
DYD3_k127_329655_2 type II secretion system protein K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 607.0
DYD3_k127_329655_20 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 344.0
DYD3_k127_329655_21 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 340.0
DYD3_k127_329655_22 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000522 330.0
DYD3_k127_329655_23 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005159 329.0
DYD3_k127_329655_24 Peptidase family M23 K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 311.0
DYD3_k127_329655_25 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004836 283.0
DYD3_k127_329655_26 PFAM Cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007973 272.0
DYD3_k127_329655_27 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000000001202 225.0
DYD3_k127_329655_28 PFAM Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000006698 198.0
DYD3_k127_329655_29 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000002947 196.0
DYD3_k127_329655_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006502 611.0
DYD3_k127_329655_30 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.00000000000000000000000000000000000000000000000000000131 198.0
DYD3_k127_329655_31 PFAM NUDIX hydrolase K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000001189 190.0
DYD3_k127_329655_32 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000005035 182.0
DYD3_k127_329655_33 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000005164 193.0
DYD3_k127_329655_34 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000004708 151.0
DYD3_k127_329655_35 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000001111 144.0
DYD3_k127_329655_36 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000006872 136.0
DYD3_k127_329655_37 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000003053 115.0
DYD3_k127_329655_38 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000004081 122.0
DYD3_k127_329655_39 Modulates RecA activity K03565 - - 0.000000000000000000000000003891 115.0
DYD3_k127_329655_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000076 599.0
DYD3_k127_329655_40 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.00000000000000359 81.0
DYD3_k127_329655_41 - - - - 0.0000002631 55.0
DYD3_k127_329655_42 Protein of unknown function (DUF721) - - - 0.00005494 51.0
DYD3_k127_329655_43 - - - - 0.0004311 48.0
DYD3_k127_329655_5 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 591.0
DYD3_k127_329655_6 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 548.0
DYD3_k127_329655_7 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 539.0
DYD3_k127_329655_8 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 463.0
DYD3_k127_329655_9 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 490.0
DYD3_k127_3339381_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1211.0
DYD3_k127_3339381_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 571.0
DYD3_k127_3339381_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005485 579.0
DYD3_k127_3339381_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 445.0
DYD3_k127_3339381_4 Could be involved in insertion of integral membrane proteins into the membrane K08998 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031226,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.00000000000000000000000007695 109.0
DYD3_k127_3339381_5 DNA topoisomerase, type IA, central K03169 - 5.99.1.2 0.0000000000002127 72.0
DYD3_k127_3339381_6 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000002701 67.0
DYD3_k127_3339381_7 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000001221 61.0
DYD3_k127_3350419_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1058.0
DYD3_k127_3350419_1 phosphorelay signal transduction system K02437 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 366.0
DYD3_k127_3350419_2 Protein of unknown function (DUF4197) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001814 269.0
DYD3_k127_3350419_3 response regulator - - - 0.0000000000000000000000000000000000000000000000000000213 194.0
DYD3_k127_3350419_4 Pfam Response regulator receiver - - - 0.0000000000000000000000000000000000000000004511 162.0
DYD3_k127_3350419_5 response regulator - - - 0.000000000007042 70.0
DYD3_k127_3357255_0 Biotin carboxylase C-terminal domain K01965,K01968,K13777 - 6.4.1.3,6.4.1.4,6.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009041 553.0
DYD3_k127_3357255_1 HMGL-like K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 452.0
DYD3_k127_3357255_10 Protein of unknown function (DUF3592) - - - 0.0003741 53.0
DYD3_k127_3357255_2 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 397.0
DYD3_k127_3357255_3 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 366.0
DYD3_k127_3357255_4 2-hydroxychromene-2-carboxylate isomerase K14584 - 5.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000007116 240.0
DYD3_k127_3357255_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000005562 226.0
DYD3_k127_3357255_7 Invasion gene expression up-regulator SirB - - - 0.00000000000000000000000001745 114.0
DYD3_k127_3357255_8 - - - - 0.00000000000001639 78.0
DYD3_k127_3357255_9 Fe-S protein - - - 0.000000001932 63.0
DYD3_k127_3371802_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1466.0
DYD3_k127_3371802_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 4.908e-206 646.0
DYD3_k127_3371802_10 Histone H1-like nucleoprotein HC2 K11275 - - 0.00004955 49.0
DYD3_k127_3371802_2 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009974 529.0
DYD3_k127_3371802_3 PFAM aminotransferase, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 434.0
DYD3_k127_3371802_4 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 411.0
DYD3_k127_3371802_5 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 387.0
DYD3_k127_3371802_6 PFAM N-acetylmuramoyl-L-alanine amidase K03806 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000008727 220.0
DYD3_k127_3371802_7 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000002571 149.0
DYD3_k127_3371802_8 - K06950 - - 0.000000000007807 69.0
DYD3_k127_3371802_9 Protein of unknown function (DUF2442) - - - 0.000000000008716 68.0
DYD3_k127_3373047_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 8.5e-238 746.0
DYD3_k127_3373047_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 5.384e-211 662.0
DYD3_k127_3373047_2 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 400.0
DYD3_k127_3373047_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 328.0
DYD3_k127_3373047_4 Phenylacetic acid degradation protein PaaY K02617,K08279 GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001998 271.0
DYD3_k127_3373047_5 Metal binding domain of Ada K00567,K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000001835 247.0
DYD3_k127_3373047_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000002337 189.0
DYD3_k127_3373047_7 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000005304 176.0
DYD3_k127_3373047_8 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000002511 114.0
DYD3_k127_3402505_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.113e-198 627.0
DYD3_k127_3402505_1 phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 456.0
DYD3_k127_3402505_10 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000499 118.0
DYD3_k127_3402505_11 - - - - 0.0000000001384 66.0
DYD3_k127_3402505_2 Membrane-bound lytic murein transglycosylase K08304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 417.0
DYD3_k127_3402505_3 Mg2 and Co2 transporter CorC K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 369.0
DYD3_k127_3402505_4 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009564 353.0
DYD3_k127_3402505_5 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 343.0
DYD3_k127_3402505_6 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000567 221.0
DYD3_k127_3402505_7 ApaG domain - - - 0.0000000000000000000000000000000000000000000000000000007237 197.0
DYD3_k127_3402505_8 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000003482 199.0
DYD3_k127_3402505_9 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000275 141.0
DYD3_k127_3414040_0 Diguanylate cyclase - - - 9.357e-310 977.0
DYD3_k127_3414040_1 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 2.607e-253 792.0
DYD3_k127_3414040_10 cyclopropane-fatty-acyl-phospholipid synthase K16868 - 2.1.1.265 0.00000000000000000000000000000000000000000000000000308 188.0
DYD3_k127_3414040_11 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000002452 158.0
DYD3_k127_3414040_12 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000001277 157.0
DYD3_k127_3414040_13 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000001088 112.0
DYD3_k127_3414040_2 MacB-like periplasmic core domain K02004 - - 1.597e-217 706.0
DYD3_k127_3414040_3 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 391.0
DYD3_k127_3414040_4 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 338.0
DYD3_k127_3414040_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 342.0
DYD3_k127_3414040_6 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 317.0
DYD3_k127_3414040_7 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000032 278.0
DYD3_k127_3414040_8 PFAM AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001997 260.0
DYD3_k127_3414040_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001111 260.0
DYD3_k127_3422586_0 Insulinase (Peptidase family M16) K07263 - - 1.016e-271 864.0
DYD3_k127_3422586_1 Hsp90 protein K04079 - - 4.603e-201 650.0
DYD3_k127_3422586_2 sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 523.0
DYD3_k127_3422586_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000008642 223.0
DYD3_k127_3422586_4 branched-chain amino acid permease (azaleucine resistance) - - - 0.00000000000000000000000000000000000000000000000002024 188.0
DYD3_k127_3422586_5 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000006448 173.0
DYD3_k127_3422586_6 Branched-chain amino acid transport protein (AzlD) - - - 0.000000000000003 88.0
DYD3_k127_3493269_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 597.0
DYD3_k127_3493269_1 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 539.0
DYD3_k127_3493269_2 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 444.0
DYD3_k127_3493269_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000556 382.0
DYD3_k127_3493269_4 UbiH UbiF VisC COQ6 family K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006472 258.0
DYD3_k127_3493269_5 Nucleotidyl transferase K00992 - 2.7.7.99 0.00000000000000000000000000000000000000000000000000000000000000000000003077 248.0
DYD3_k127_3493269_6 Belongs to the transcriptional regulatory Fis family K03557 - - 0.000000000000000000000279 102.0
DYD3_k127_3493269_7 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000005012 80.0
DYD3_k127_3495573_0 TIGRFAM filamentous haemagglutinin family outer membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 483.0
DYD3_k127_3495573_1 luciferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 370.0
DYD3_k127_3495573_2 COG0501 Zn-dependent protease with chaperone function K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 379.0
DYD3_k127_3495573_3 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 367.0
DYD3_k127_3495573_4 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008027 325.0
DYD3_k127_3495573_5 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002924 269.0
DYD3_k127_3495573_6 Protein of unknown function (DUF1223) - - - 0.00000000000000000000000000000000000000000000000000000000000008254 226.0
DYD3_k127_3495573_7 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000004335 201.0
DYD3_k127_3495573_8 spectrin binding K15502 - - 0.000000000000000001168 95.0
DYD3_k127_3495573_9 DNA-sulfur modification-associated - - - 0.00001745 55.0
DYD3_k127_3533929_0 dna topoisomerase III K03169 - 5.99.1.2 0.0 1080.0
DYD3_k127_3533929_1 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 4.461e-205 666.0
DYD3_k127_3533929_10 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000000000000000000000004089 187.0
DYD3_k127_3533929_11 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.0000000000000000000000000000000000000000001592 162.0
DYD3_k127_3533929_2 Potassium transporter peripheral membrane component K03499 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 611.0
DYD3_k127_3533929_3 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 422.0
DYD3_k127_3533929_4 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 419.0
DYD3_k127_3533929_5 DNA recombination-mediator protein A K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 383.0
DYD3_k127_3533929_6 PFAM Peptidoglycan-binding LysM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 355.0
DYD3_k127_3533929_7 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006418,GO:0006431,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019752,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 324.0
DYD3_k127_3533929_8 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000005519 220.0
DYD3_k127_3533929_9 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000002936 207.0
DYD3_k127_3549347_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1049.0
DYD3_k127_3549347_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 3.308e-261 833.0
DYD3_k127_3549347_10 rieske 2fe-2s - - - 0.000000000000000000000000000000001691 141.0
DYD3_k127_3549347_11 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000000001856 106.0
DYD3_k127_3549347_12 succinate dehydrogenase fumarate reductase, flavoprotein subunit K00394 - 1.8.99.2 0.000000000000000000007073 91.0
DYD3_k127_3549347_13 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.00000000000000000001939 97.0
DYD3_k127_3549347_2 Aminotransferase class I and II K00832 - 2.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006764 574.0
DYD3_k127_3549347_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 432.0
DYD3_k127_3549347_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 415.0
DYD3_k127_3549347_5 peptidase, S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 393.0
DYD3_k127_3549347_6 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 355.0
DYD3_k127_3549347_7 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000008637 258.0
DYD3_k127_3549347_8 Uroporphyrin-III C tetrapyrrole K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000919 233.0
DYD3_k127_3549347_9 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000006749 197.0
DYD3_k127_3549903_0 Bacterial DNA polymerase III alpha subunit K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 523.0
DYD3_k127_3549903_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002362 271.0
DYD3_k127_3549903_2 cheY-homologous receiver domain - - - 0.000000000000000000000000000002072 124.0
DYD3_k127_3549903_3 PFAM Hpt domain protein - - - 0.00000000000000522 78.0
DYD3_k127_3553370_0 Isocitrate lyase K01637 - 4.1.3.1 1.122e-222 698.0
DYD3_k127_3553370_1 twitching motility protein K02670 - - 7.39e-202 632.0
DYD3_k127_3553370_10 ABC-2 type transporter K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007984 325.0
DYD3_k127_3553370_11 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001162 280.0
DYD3_k127_3553370_12 VanZ like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004663 278.0
DYD3_k127_3553370_13 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006231 253.0
DYD3_k127_3553370_14 Serine aminopeptidase, S33 K07018 - - 0.00000000000000000000000000000000000000000000000000000000001284 230.0
DYD3_k127_3553370_15 Ferredoxin - - - 0.000000000000000000000000000000000000000000000001327 175.0
DYD3_k127_3553370_16 YGGT family K02221 - - 0.0000000000000000000000000000000000000002837 165.0
DYD3_k127_3553370_17 DUF167 K09131 - - 0.000000000000003686 87.0
DYD3_k127_3553370_2 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 1.063e-198 636.0
DYD3_k127_3553370_3 twitching motility protein K02669 - - 6.978e-198 619.0
DYD3_k127_3553370_4 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 596.0
DYD3_k127_3553370_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 467.0
DYD3_k127_3553370_6 Belongs to the methyltransferase superfamily K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 441.0
DYD3_k127_3553370_7 PFAM ABC transporter related K01990,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006686 405.0
DYD3_k127_3553370_8 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 360.0
DYD3_k127_3553370_9 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 329.0
DYD3_k127_3558749_0 Type II/IV secretion system protein K02454 - - 1.321e-234 750.0
DYD3_k127_3558749_1 Type II secretion system (T2SS), protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 566.0
DYD3_k127_3558749_2 secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 478.0
DYD3_k127_3558749_3 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 458.0
DYD3_k127_3558749_4 cytochrome C family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 352.0
DYD3_k127_3558749_5 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 318.0
DYD3_k127_3629383_0 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 8.16e-207 662.0
DYD3_k127_3629383_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 526.0
DYD3_k127_3629383_2 Single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 386.0
DYD3_k127_3629383_3 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000001374 201.0
DYD3_k127_3629383_4 PFAM MaoC domain protein dehydratase - - - 0.0000000000000000000000000000000000000000000000000005527 196.0
DYD3_k127_3629383_5 Cyclophilin-like K09143 - - 0.00000000000000000000000000000009007 139.0
DYD3_k127_3629383_6 Glycine zipper 2TM domain - - - 0.000000000000000000000002271 109.0
DYD3_k127_3629383_7 KTSC domain - - - 0.000000002011 66.0
DYD3_k127_3640129_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 7.988e-303 946.0
DYD3_k127_3640129_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000839 585.0
DYD3_k127_3640129_2 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005359 399.0
DYD3_k127_3640129_3 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.0000000000000000000000000000000000000000000000000000000000000000005744 241.0
DYD3_k127_3640129_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000006949 186.0
DYD3_k127_367572_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2056.0
DYD3_k127_367572_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 7.017e-235 731.0
DYD3_k127_372758_0 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 8.181e-246 765.0
DYD3_k127_372758_1 Protein involved in ribonuclease activity and hydrolase activity K01147 - 3.1.13.1 2.366e-198 642.0
DYD3_k127_372758_10 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 316.0
DYD3_k127_372758_11 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 299.0
DYD3_k127_372758_12 TonB family K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001037 284.0
DYD3_k127_372758_13 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008955,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0042546,GO:0043164,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008073 281.0
DYD3_k127_372758_14 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003666 275.0
DYD3_k127_372758_15 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002094 273.0
DYD3_k127_372758_16 Uncharacterised protein family (UPF0227) K07000 - - 0.0000000000000000000000000000000000000000000000000000001337 202.0
DYD3_k127_372758_17 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000007959 196.0
DYD3_k127_372758_18 Catalyzes a trans-dehydration via an enolate intermediate K03786 GO:0003674,GO:0003824,GO:0003855,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 4.2.1.10 0.00000000000000000000000000000000000000000000000000005062 190.0
DYD3_k127_372758_19 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000000000000003362 188.0
DYD3_k127_372758_2 Aminotransferase K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 625.0
DYD3_k127_372758_20 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000000000001247 199.0
DYD3_k127_372758_21 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000000000000121 171.0
DYD3_k127_372758_22 - - - - 0.00000000000000000000000000000000000000000000883 173.0
DYD3_k127_372758_23 Thioredoxin-like - - - 0.0000000000000000000000000000000000000002069 155.0
DYD3_k127_372758_24 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000000005222 137.0
DYD3_k127_372758_25 zinc-ribbon domain - - - 0.00000000000000000000000000000004662 140.0
DYD3_k127_372758_26 Rubredoxin - - - 0.0000000000000000000000000000003682 123.0
DYD3_k127_372758_27 Membrane fusogenic activity K09806 - - 0.000000000000004324 80.0
DYD3_k127_372758_28 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000001291 61.0
DYD3_k127_372758_3 Mg chelatase subunit ChlI K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 593.0
DYD3_k127_372758_4 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 592.0
DYD3_k127_372758_5 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 584.0
DYD3_k127_372758_6 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 508.0
DYD3_k127_372758_7 dihydroorotase K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 504.0
DYD3_k127_372758_8 COG0524 Sugar kinases, ribokinase family K00856 - 2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005139 447.0
DYD3_k127_372758_9 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 333.0
DYD3_k127_3731222_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1057.0
DYD3_k127_3731222_1 glutamine synthetase K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 5.473e-247 770.0
DYD3_k127_3731222_10 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 336.0
DYD3_k127_3731222_11 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009146 318.0
DYD3_k127_3731222_12 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000001969 270.0
DYD3_k127_3731222_13 Serine aminopeptidase, S33 K06889 - - 0.0000000000000000000000000000000000000000000000000002637 195.0
DYD3_k127_3731222_14 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000003624 176.0
DYD3_k127_3731222_15 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000000000000007459 153.0
DYD3_k127_3731222_16 Domain of unknown function (DUF4124) - - - 0.0000000000000000000000000002239 130.0
DYD3_k127_3731222_17 Domain of unknown function (DUF4124) - - - 0.0000000000000000000000000907 112.0
DYD3_k127_3731222_2 Belongs to the malate synthase family K01638 - 2.3.3.9 1.411e-234 737.0
DYD3_k127_3731222_3 PFAM peptidase M3A and M3B, thimet oligopeptidase F K01414 - 3.4.24.70 8.172e-221 694.0
DYD3_k127_3731222_4 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 3.024e-210 662.0
DYD3_k127_3731222_5 COG1538 Outer membrane protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 418.0
DYD3_k127_3731222_6 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 397.0
DYD3_k127_3731222_7 3-Deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 389.0
DYD3_k127_3731222_8 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 362.0
DYD3_k127_3731222_9 Exodeoxyribonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 358.0
DYD3_k127_3776020_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 1.886e-309 966.0
DYD3_k127_3776020_1 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 7e-239 777.0
DYD3_k127_3776020_10 - - - - 0.000000001261 58.0
DYD3_k127_3776020_2 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 566.0
DYD3_k127_3776020_3 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 489.0
DYD3_k127_3776020_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 465.0
DYD3_k127_3776020_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008492 381.0
DYD3_k127_3776020_6 lytic murein K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 319.0
DYD3_k127_3776020_7 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000005737 224.0
DYD3_k127_3776020_8 lytic transglycosylase K08307 - - 0.0000000000000000000000000000003885 131.0
DYD3_k127_3776020_9 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000001287 119.0
DYD3_k127_3801155_0 Glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 2293.0
DYD3_k127_3801155_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 1.232e-315 980.0
DYD3_k127_3801155_10 pilus assembly protein PilP K02665 - - 0.000000000000000000000000000000000000000000001348 171.0
DYD3_k127_3801155_2 type II and III secretion system protein K02666 - - 1.013e-244 779.0
DYD3_k127_3801155_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 2.095e-240 750.0
DYD3_k127_3801155_4 Type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 465.0
DYD3_k127_3801155_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 422.0
DYD3_k127_3801155_6 Cache domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 371.0
DYD3_k127_3801155_7 Pilus assembly protein PilO K02664 - - 0.0000000000000000000000000000000000000000000000000000000000000000007772 233.0
DYD3_k127_3801155_8 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000004579 218.0
DYD3_k127_3801155_9 fimbrial biogenesis protein PilN K02663 - - 0.0000000000000000000000000000000000000000000000000000000009645 211.0
DYD3_k127_3819557_0 NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 0.0 1058.0
DYD3_k127_3819557_1 FAD binding domain K00480,K22270 - 1.14.13.1,1.14.13.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 471.0
DYD3_k127_3819557_2 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 408.0
DYD3_k127_3819557_3 Dehydrogenase K00101,K15054 - 1.1.2.3,1.1.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 334.0
DYD3_k127_3819557_4 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007822 292.0
DYD3_k127_3819557_5 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000007226 267.0
DYD3_k127_3819557_6 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000001915 168.0
DYD3_k127_3819557_7 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000007944 138.0
DYD3_k127_3819557_8 Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - 0.00000000000000000000000004401 112.0
DYD3_k127_3909546_0 Sulfate transporter antisigma-factor antagonist STAS K03321 - - 9.285e-227 725.0
DYD3_k127_3909546_1 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005203 436.0
DYD3_k127_3909546_2 CHAD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 309.0
DYD3_k127_3909546_3 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003111 278.0
DYD3_k127_3909546_4 Sulfurtransferase TusA - - - 0.0000000000000000000000000003569 115.0
DYD3_k127_3909546_5 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.0000000000000001076 84.0
DYD3_k127_3912589_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 1.799e-276 863.0
DYD3_k127_3912589_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000917 396.0
DYD3_k127_3912589_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002643 243.0
DYD3_k127_3912589_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000000000000000003091 216.0
DYD3_k127_3912589_4 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.0000005414 61.0
DYD3_k127_3921438_0 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004636 431.0
DYD3_k127_3921438_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003025 363.0
DYD3_k127_3921438_2 PFAM Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000646 359.0
DYD3_k127_3921438_3 Nitrogen regulatory protein P-II K04751,K04752 - - 0.0000000000000000000000000000000000000000000000000000000001894 204.0
DYD3_k127_3921438_4 Small MutS-related domain - - - 0.0000000000000000000000000000000000000000000000003224 182.0
DYD3_k127_3921438_5 Tetratricopeptide repeat - - - 0.00000000000000000000000023 113.0
DYD3_k127_3923108_0 Belongs to the TPP enzyme family K01576 - 4.1.1.7 4.664e-199 639.0
DYD3_k127_3923108_1 Na+-transporting oxaloacetate decarboxylase beta subunit K01572 - 4.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 566.0
DYD3_k127_3923108_2 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 313.0
DYD3_k127_3923108_3 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 319.0
DYD3_k127_3923108_4 Glutathione S-transferase - - - 0.0000000000000000000000000000000001106 134.0
DYD3_k127_3932024_0 Malic enzyme K00029 - 1.1.1.40 0.0 1058.0
DYD3_k127_3932024_1 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 458.0
DYD3_k127_3932024_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 415.0
DYD3_k127_3932024_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093 398.0
DYD3_k127_3932024_4 - - - - 0.0000000000000000000003298 100.0
DYD3_k127_3932024_5 - - - - 0.00000001929 56.0
DYD3_k127_3944370_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K00170 - 1.2.7.1 1.061e-314 980.0
DYD3_k127_3944370_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582 552.0
DYD3_k127_3944370_2 Glutathione S-transferase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003688 435.0
DYD3_k127_3944370_3 ferredoxin K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003624 284.0
DYD3_k127_3944370_4 domain protein K00528,K16951 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007403 275.0
DYD3_k127_3944370_5 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000009151 225.0
DYD3_k127_3944370_6 - - - - 0.00000000000000000001138 97.0
DYD3_k127_396626_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1164.0
DYD3_k127_396626_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.096e-208 651.0
DYD3_k127_396626_2 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004031 556.0
DYD3_k127_396626_3 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 334.0
DYD3_k127_396626_4 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000000000000000000008514 251.0
DYD3_k127_396626_5 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009997 251.0
DYD3_k127_396626_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000327 240.0
DYD3_k127_396626_7 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000006005 153.0
DYD3_k127_3972143_0 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 505.0
DYD3_k127_3972143_1 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 497.0
DYD3_k127_3972143_10 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000000001517 99.0
DYD3_k127_3972143_11 spectrin binding - - - 0.0000000000000002663 87.0
DYD3_k127_3972143_12 regulator - - - 0.0005502 47.0
DYD3_k127_3972143_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 393.0
DYD3_k127_3972143_3 Succinylglutamate desuccinylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005082 352.0
DYD3_k127_3972143_4 probably involved in intracellular septation K06190 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002594 253.0
DYD3_k127_3972143_5 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000006581 247.0
DYD3_k127_3972143_6 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000002911 240.0
DYD3_k127_3972143_7 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000007817 219.0
DYD3_k127_3972143_8 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000002196 209.0
DYD3_k127_3972143_9 Appr-1'-p processing enzyme - - - 0.000000000000000000000000000001708 135.0
DYD3_k127_3982497_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1167.0
DYD3_k127_3982497_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 568.0
DYD3_k127_3982497_10 NUDIX domain K08310 - 3.6.1.67 0.000000000000000000000000000000000000000000000001879 187.0
DYD3_k127_3982497_11 MaoC like domain - - - 0.00000000000000000000000000000000000000000000005121 173.0
DYD3_k127_3982497_12 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000003178 159.0
DYD3_k127_3982497_13 Protein of unknown function (DUF2946) - - - 0.000000000000000000000000000000000004231 145.0
DYD3_k127_3982497_14 Ribonuclease K01167 - 3.1.27.3 0.00000000000000000000000000008655 119.0
DYD3_k127_3982497_15 (barnase) inhibitor - - - 0.0000000000000000008254 96.0
DYD3_k127_3982497_2 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 433.0
DYD3_k127_3982497_3 Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005562 337.0
DYD3_k127_3982497_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 293.0
DYD3_k127_3982497_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001488 258.0
DYD3_k127_3982497_6 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000004633 223.0
DYD3_k127_3982497_7 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.000000000000000000000000000000000000000000000000000000008292 214.0
DYD3_k127_3982497_8 Haem-degrading - - - 0.00000000000000000000000000000000000000000000000000002043 194.0
DYD3_k127_3982497_9 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000000000000966 191.0
DYD3_k127_3986822_0 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004568 355.0
DYD3_k127_3986822_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K22229 - 1.1.1.215 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 310.0
DYD3_k127_3986822_2 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 297.0
DYD3_k127_3986822_3 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000000001302 226.0
DYD3_k127_3986822_4 Belongs to the LDH2 MDH2 oxidoreductase family K00073,K13574 - 1.1.1.350 0.000000000000002994 78.0
DYD3_k127_3986822_5 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000009947 58.0
DYD3_k127_4000708_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 6.281e-232 728.0
DYD3_k127_4000708_1 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 404.0
DYD3_k127_4000708_2 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003925 259.0
DYD3_k127_4000708_3 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.00000000000000000000000000000000000000000000000002531 181.0
DYD3_k127_4000708_4 COGs COG4446 conserved - - - 0.00000000000000000000000000000000000004177 149.0
DYD3_k127_4015114_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 7.509e-203 647.0
DYD3_k127_4015114_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 8.575e-195 619.0
DYD3_k127_4015114_2 Type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 500.0
DYD3_k127_4015114_3 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 303.0
DYD3_k127_4015114_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000007722 155.0
DYD3_k127_4048833_0 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007628 417.0
DYD3_k127_4048833_1 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004421 392.0
DYD3_k127_4048833_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002935 239.0
DYD3_k127_4048833_3 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000006632 191.0
DYD3_k127_4048833_4 acetyltransferase - - - 0.0000000000000000000000000000000000000000000004266 171.0
DYD3_k127_4064832_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 6.97e-300 929.0
DYD3_k127_4064832_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 2.314e-197 627.0
DYD3_k127_4064832_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000004278 135.0
DYD3_k127_4064832_11 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000008765 132.0
DYD3_k127_4064832_12 Anti sigma-E protein RseA, N-terminal domain K03597 - - 0.0000000000000000001213 100.0
DYD3_k127_4064832_13 Domain of unknown function (DUF4845) - - - 0.00000000015 68.0
DYD3_k127_4064832_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 606.0
DYD3_k127_4064832_3 Malonyl CoA-acyl carrier protein transacylase K00645,K15355 GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 381.0
DYD3_k127_4064832_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003448 383.0
DYD3_k127_4064832_5 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 334.0
DYD3_k127_4064832_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 325.0
DYD3_k127_4064832_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 308.0
DYD3_k127_4064832_8 negative regulator of sigma E activity K03598 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000576 256.0
DYD3_k127_4064832_9 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000000000000000000000011 250.0
DYD3_k127_4065812_0 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006035 471.0
DYD3_k127_4065812_1 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 295.0
DYD3_k127_4065812_2 Ribosomal RNA adenine dimethylases K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 291.0
DYD3_k127_4065812_3 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000001347 218.0
DYD3_k127_4065812_4 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000001385 203.0
DYD3_k127_4065812_5 Protein of unknown function DUF45 K07043 - - 0.000000000000000009192 96.0
DYD3_k127_4065812_6 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000001579 82.0
DYD3_k127_406768_0 Penicillin amidase K01434 - 3.5.1.11 3.943e-223 713.0
DYD3_k127_406768_1 PFAM acyl-CoA dehydrogenase domain protein K09456 - - 3.102e-198 638.0
DYD3_k127_406768_10 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000001201 148.0
DYD3_k127_406768_11 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000001244 55.0
DYD3_k127_406768_2 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 603.0
DYD3_k127_406768_3 PFAM Extracellular ligand-binding receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006928 342.0
DYD3_k127_406768_4 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001761 269.0
DYD3_k127_406768_5 PFAM ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001328 253.0
DYD3_k127_406768_6 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006418 248.0
DYD3_k127_406768_7 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000007102 228.0
DYD3_k127_406768_8 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000001681 173.0
DYD3_k127_406768_9 Disulfide bond formation protein DsbB - - - 0.000000000000000000000000000000000000000000001689 174.0
DYD3_k127_4097061_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.827e-273 857.0
DYD3_k127_4097061_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895,K01907 - 6.2.1.1,6.2.1.16 9.878e-245 765.0
DYD3_k127_4097061_10 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003655 249.0
DYD3_k127_4097061_11 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.000000000000000000000000000000000000000000000007316 176.0
DYD3_k127_4097061_12 CoA binding domain K09181 - - 0.000000000000000000000000000000000000166 147.0
DYD3_k127_4097061_13 Thioesterase superfamily K07107 - - 0.00000000000000000000000000000001617 146.0
DYD3_k127_4097061_2 Acyl-CoA dehydrogenase N terminal K20035 - - 1.762e-243 765.0
DYD3_k127_4097061_3 Electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 443.0
DYD3_k127_4097061_4 PFAM Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 428.0
DYD3_k127_4097061_5 Electron transfer flavoprotein, beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004923 395.0
DYD3_k127_4097061_6 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 352.0
DYD3_k127_4097061_7 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000579 290.0
DYD3_k127_4097061_8 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001051 297.0
DYD3_k127_4097061_9 enoyl-CoA hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002868 268.0
DYD3_k127_4098421_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.28e-287 891.0
DYD3_k127_4098421_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 508.0
DYD3_k127_4098421_10 protein SCO1 SenC PrrC, involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000000000000000001306 226.0
DYD3_k127_4098421_11 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000009506 226.0
DYD3_k127_4098421_12 SURF1 family - - - 0.00000000000000000000000000000000000000000000601 172.0
DYD3_k127_4098421_13 signal sequence binding - - - 0.0000000000000000000000000000000000000000008916 165.0
DYD3_k127_4098421_14 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000000000000000000005946 152.0
DYD3_k127_4098421_15 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.000000000000000000000001538 119.0
DYD3_k127_4098421_16 Protein of unknown function (DUF2909) - - - 0.0000002249 60.0
DYD3_k127_4098421_17 Pfam:DUF1602 - - - 0.0000002499 63.0
DYD3_k127_4098421_18 Protein of unknown function (DUF2970) - - - 0.00005352 53.0
DYD3_k127_4098421_2 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007312 389.0
DYD3_k127_4098421_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 389.0
DYD3_k127_4098421_4 RNA polymerase sigma K03089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 373.0
DYD3_k127_4098421_5 COG1845 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 372.0
DYD3_k127_4098421_6 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 316.0
DYD3_k127_4098421_7 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 298.0
DYD3_k127_4098421_8 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002157 256.0
DYD3_k127_4098421_9 oxidase assembly K02258 - - 0.000000000000000000000000000000000000000000000000000000000000000000001685 239.0
DYD3_k127_4100885_0 ABC-type multidrug transport system, ATPase and permease K06147 - - 2.149e-204 663.0
DYD3_k127_4100885_1 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 570.0
DYD3_k127_4100885_2 Including yeast histone deacetylase and acetoin utilization protein K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 336.0
DYD3_k127_4100885_3 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000001602 148.0
DYD3_k127_4100885_4 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000005094 122.0
DYD3_k127_4100885_5 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.00000000000000000000000004343 108.0
DYD3_k127_4160806_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 3.068e-288 900.0
DYD3_k127_4160806_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 487.0
DYD3_k127_4160806_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000001198 64.0
DYD3_k127_4169059_0 Tripartite tricarboxylate transporter TctA family K07793 - - 1.999e-224 705.0
DYD3_k127_4169059_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 439.0
DYD3_k127_4169059_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006322 412.0
DYD3_k127_4169059_3 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 411.0
DYD3_k127_4169059_4 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000599 378.0
DYD3_k127_4169059_5 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001878 243.0
DYD3_k127_4169059_6 tellurite resistance protein - - - 0.00000000000000000000000000000000000000000000000002891 183.0
DYD3_k127_4169059_7 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000004354 189.0
DYD3_k127_4169059_8 MaoC like domain - - - 0.000000000000000000000000000000000000000000001235 170.0
DYD3_k127_4186242_0 Acetyl propionyl-CoA carboxylase, alpha subunit K01959,K01965,K01968 - 6.4.1.1,6.4.1.3,6.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004623 494.0
DYD3_k127_4186242_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 423.0
DYD3_k127_4186242_2 acyl-CoA dehydrogenase K11731 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004215 284.0
DYD3_k127_4232032_0 amine dehydrogenase activity - - - 9.246e-292 925.0
DYD3_k127_4232032_1 Belongs to the thiolase family K00626 - 2.3.1.9 1.359e-203 639.0
DYD3_k127_4232032_10 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000006801 231.0
DYD3_k127_4232032_11 Protease prsW family - - - 0.0000000000000000000000000000000000000001616 163.0
DYD3_k127_4232032_12 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000000000000008961 130.0
DYD3_k127_4232032_13 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000133 73.0
DYD3_k127_4232032_2 Belongs to the GMC oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 595.0
DYD3_k127_4232032_3 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 544.0
DYD3_k127_4232032_4 Phosphate transporter family K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007036 505.0
DYD3_k127_4232032_5 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 390.0
DYD3_k127_4232032_6 Protein phosphatase 2C domain K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 358.0
DYD3_k127_4232032_7 KR domain K00076,K08081 - 1.1.1.159,1.1.1.206 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 316.0
DYD3_k127_4232032_8 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000452 308.0
DYD3_k127_4232032_9 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007136 285.0
DYD3_k127_4245779_0 PFAM AMP-dependent synthetase K01895 - 6.2.1.1 6.748e-276 876.0
DYD3_k127_4245779_1 Belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 4.6e-218 686.0
DYD3_k127_4245779_2 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 531.0
DYD3_k127_4245779_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 398.0
DYD3_k127_4245779_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000005006 186.0
DYD3_k127_4257729_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 456.0
DYD3_k127_4257729_1 Aminotransferase class IV K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 383.0
DYD3_k127_4257729_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000004881 239.0
DYD3_k127_4257729_3 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000002229 218.0
DYD3_k127_4257729_4 Belongs to the UPF0250 family K09158 - - 0.0000000000000000000000000009976 114.0
DYD3_k127_4257729_5 Histidine kinase K02482 - 2.7.13.3 0.000000000000000000006809 100.0
DYD3_k127_4262764_0 Bacterial protein of unknown function (DUF853) K06915 - - 4.178e-229 718.0
DYD3_k127_4262764_1 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 479.0
DYD3_k127_4262764_10 transcriptional regulatory protein - - - 0.00000000000000000004053 89.0
DYD3_k127_4262764_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 447.0
DYD3_k127_4262764_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009457 426.0
DYD3_k127_4262764_4 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 390.0
DYD3_k127_4262764_5 phosphate transport system permease K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 395.0
DYD3_k127_4262764_6 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005085 392.0
DYD3_k127_4262764_7 Transcriptional regulatory protein, C terminal K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 306.0
DYD3_k127_4262764_8 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 291.0
DYD3_k127_4262764_9 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002691 272.0
DYD3_k127_4271819_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1157.0
DYD3_k127_4271819_1 Phosphoesterase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001823 280.0
DYD3_k127_4271819_2 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.000000000000000000000000000000000000000000000000000003904 198.0
DYD3_k127_4272486_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.372e-217 691.0
DYD3_k127_4272486_1 PFAM ABC transporter K10004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009572 403.0
DYD3_k127_4272486_2 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K02029,K10003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 336.0
DYD3_k127_4272486_3 With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate K10002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 317.0
DYD3_k127_4272486_4 - - - - 0.000000000000000000000000000000000000000000000000000000000004865 216.0
DYD3_k127_4272486_5 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000169 205.0
DYD3_k127_4272486_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000004176 162.0
DYD3_k127_4272486_7 Carboxylesterase family K01066 - - 0.000000000000000000000000000000000000006119 148.0
DYD3_k127_4272486_8 - - - - 0.000000001156 70.0
DYD3_k127_4331999_0 Carboxyl transferase domain K13778 - 6.4.1.5 4.61e-235 748.0
DYD3_k127_4331999_1 PFAM Acyl-CoA dehydrogenase K11731 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007043 364.0
DYD3_k127_4331999_2 KR domain K13774 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 363.0
DYD3_k127_4331999_3 COG1960 Acyl-CoA dehydrogenases K00249,K00255 - 1.3.8.7,1.3.8.8 0.00000000177 59.0
DYD3_k127_4372917_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 6.268e-291 923.0
DYD3_k127_4372917_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 3.582e-230 718.0
DYD3_k127_4372917_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 603.0
DYD3_k127_4372917_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 536.0
DYD3_k127_4372917_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 293.0
DYD3_k127_4372917_5 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000002914 242.0
DYD3_k127_4372917_6 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000001038 158.0
DYD3_k127_4399387_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1451.0
DYD3_k127_4399387_1 Domain of unknown function (DUF5117) - - - 3.193e-275 872.0
DYD3_k127_4399387_10 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 330.0
DYD3_k127_4399387_11 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009723 286.0
DYD3_k127_4399387_12 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007951 270.0
DYD3_k127_4399387_13 PFAM Metal-dependent phosphohydrolase, HD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009274 281.0
DYD3_k127_4399387_14 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000000000000000009135 247.0
DYD3_k127_4399387_15 PFAM Peptidase M22, glycoprotease K14742 - - 0.000000000000000000000000000000000000000000000000000000000000004159 224.0
DYD3_k127_4399387_16 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000000000000000002895 212.0
DYD3_k127_4399387_17 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000006029 213.0
DYD3_k127_4399387_18 transcriptional regulator K07734 - - 0.000000000000000000000000000000000000000000000000111 183.0
DYD3_k127_4399387_19 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000001047 176.0
DYD3_k127_4399387_2 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 2.579e-243 757.0
DYD3_k127_4399387_20 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000764 171.0
DYD3_k127_4399387_21 Cupin domain - - - 0.000000000000000000000000000000000000000009191 168.0
DYD3_k127_4399387_22 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000000000000000000000000001839 161.0
DYD3_k127_4399387_23 Diguanylate cyclase - - - 0.000000000000000000000000000000000000004494 166.0
DYD3_k127_4399387_24 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000000006338 122.0
DYD3_k127_4399387_25 Predicted integral membrane protein (DUF2269) - - - 0.000000000000000001705 93.0
DYD3_k127_4399387_3 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 602.0
DYD3_k127_4399387_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 580.0
DYD3_k127_4399387_5 Tartrate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006033 542.0
DYD3_k127_4399387_6 Isocitrate/isopropylmalate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008437 487.0
DYD3_k127_4399387_7 Periplasmic domain of Sensor histidine kinase RisS K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 374.0
DYD3_k127_4399387_8 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 361.0
DYD3_k127_4399387_9 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000616 369.0
DYD3_k127_4414397_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 526.0
DYD3_k127_4414397_1 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 456.0
DYD3_k127_4414397_2 NADPH quinone oxidoreductase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 451.0
DYD3_k127_4414397_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 447.0
DYD3_k127_4414397_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 430.0
DYD3_k127_4414397_5 PFAM short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 416.0
DYD3_k127_4414397_6 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 404.0
DYD3_k127_4414397_7 Alpha beta hydrolase K22318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005607 386.0
DYD3_k127_4414397_8 Enoyl-CoA hydratase - - - 0.0000000000000000000000003394 107.0
DYD3_k127_4430395_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0 1235.0
DYD3_k127_4430395_1 AAA domain K03582 - 3.1.11.5 1.448e-213 691.0
DYD3_k127_4430395_2 methyltransferase - - - 0.0000000000000000000000000000000000000000001244 164.0
DYD3_k127_4448933_0 OPT oligopeptide transporter protein - - - 1.014e-197 631.0
DYD3_k127_4448933_1 Amidohydrolase K10221 - 3.1.1.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 541.0
DYD3_k127_4448933_10 PFAM BLUF domain protein - - - 0.000000000000000000000000000000000000000000000000000000000008546 211.0
DYD3_k127_4448933_11 GYD domain - - - 0.0000000000000000000000000001842 121.0
DYD3_k127_4448933_2 Oxidoreductase family, NAD-binding Rossmann fold K10219 - 1.1.1.312 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006343 535.0
DYD3_k127_4448933_3 FAD linked oxidases, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007231 533.0
DYD3_k127_4448933_4 Catalytic LigB subunit of aromatic ring-opening dioxygenase K04101 - 1.13.11.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 521.0
DYD3_k127_4448933_5 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 505.0
DYD3_k127_4448933_6 GTP cyclohydrolase K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 392.0
DYD3_k127_4448933_7 phosphate acetyltransferase K00625 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007689 325.0
DYD3_k127_4448933_8 Aromatic-ring-opening dioxygenase LigAB, LigA subunit K04100 - 1.13.11.8 0.000000000000000000000000000000000000000000000000000000000000000000007357 235.0
DYD3_k127_4448933_9 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000001655 224.0
DYD3_k127_444936_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 6.679e-217 685.0
DYD3_k127_444936_1 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 531.0
DYD3_k127_444936_10 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000000000000001944 111.0
DYD3_k127_444936_11 PBP superfamily domain - - - 0.0000000001449 66.0
DYD3_k127_444936_2 Bacterial extracellular solute-binding protein K05772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 387.0
DYD3_k127_444936_3 PFAM binding-protein-dependent transport systems inner membrane component K05773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 294.0
DYD3_k127_444936_4 ABC transporter K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001894 297.0
DYD3_k127_444936_5 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000000000000000000000000000000006023 230.0
DYD3_k127_444936_6 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000009461 223.0
DYD3_k127_444936_7 MoaE protein K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000006171 211.0
DYD3_k127_444936_8 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.00000000000000000000000000000000000002225 152.0
DYD3_k127_444936_9 Uncharacterized ACR, COG1993 - - - 0.000000000000000000000000000000000006351 139.0
DYD3_k127_4453025_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0 1101.0
DYD3_k127_4453025_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1050.0
DYD3_k127_4453025_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 299.0
DYD3_k127_4453025_11 ubiE/COQ5 methyltransferase family K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000003702 249.0
DYD3_k127_4453025_12 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000006314 219.0
DYD3_k127_4453025_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000001473 205.0
DYD3_k127_4453025_14 Fumarate reductase subunit C - - - 0.000000000000000000000000000000003575 135.0
DYD3_k127_4453025_15 Preprotein translocase subunit SecG K03075 - - 0.0000000000000000000000000000002529 128.0
DYD3_k127_4453025_16 Fumarate reductase subunit D - - - 0.000000000000006874 83.0
DYD3_k127_4453025_17 histidine kinase A domain protein - - - 0.0000000000001755 76.0
DYD3_k127_4453025_2 Fumarate reductase flavoprotein C-term - - - 8.687e-253 796.0
DYD3_k127_4453025_3 AMP-binding enzyme C-terminal domain K00666 - - 2.97e-241 758.0
DYD3_k127_4453025_4 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 618.0
DYD3_k127_4453025_5 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009986 342.0
DYD3_k127_4453025_6 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004354 319.0
DYD3_k127_4453025_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 312.0
DYD3_k127_4453025_8 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 329.0
DYD3_k127_4453025_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008439 308.0
DYD3_k127_4460348_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1238.0
DYD3_k127_4460348_1 Peptidase family M3 K01414 - 3.4.24.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 570.0
DYD3_k127_4460348_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002661 352.0
DYD3_k127_4494556_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 6.296e-198 642.0
DYD3_k127_4494556_1 Aldehyde dehydrogenase family K00141 - 1.2.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007294 566.0
DYD3_k127_4494556_2 Outer membrane protein beta-barrel family K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 384.0
DYD3_k127_4494556_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 335.0
DYD3_k127_4494556_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 310.0
DYD3_k127_4494556_5 AAA domain K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002467 269.0
DYD3_k127_4528702_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 3.664e-223 698.0
DYD3_k127_4528702_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 533.0
DYD3_k127_4528702_2 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.0000000000000000000000000000006667 124.0
DYD3_k127_4537148_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007573 600.0
DYD3_k127_4537148_1 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K10764 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 521.0
DYD3_k127_4537148_2 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0019897,GO:0019898,GO:0030145,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000008592 244.0
DYD3_k127_4537148_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000007189 216.0
DYD3_k127_4581898_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009632 421.0
DYD3_k127_4581898_1 MTH538 TIR-like domain (DUF1863) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 427.0
DYD3_k127_4581898_2 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 326.0
DYD3_k127_4581898_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 297.0
DYD3_k127_4581898_4 Glutathione S-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008251 302.0
DYD3_k127_4581898_5 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002612 279.0
DYD3_k127_4581898_6 COG1247 Sortase and related acyltransferases K03823 - 2.3.1.183 0.000000000000000000000000000000000000000000000000000007296 195.0
DYD3_k127_4581898_7 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781,K20023 - 4.2.1.156,4.2.1.42,5.1.2.2 0.00000000002359 68.0
DYD3_k127_4594691_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 1.63e-223 698.0
DYD3_k127_4594691_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 477.0
DYD3_k127_4594691_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 421.0
DYD3_k127_4594691_3 Phosphotransferase enzyme family K00899 - 2.7.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 378.0
DYD3_k127_4594691_4 beta-lactamase K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 334.0
DYD3_k127_4594691_5 COG1136 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006779 251.0
DYD3_k127_4594691_6 major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000009616 195.0
DYD3_k127_4594691_7 - - - - 0.000000000000000000000000000000000006332 146.0
DYD3_k127_4594691_8 SWI complex, BAF60b domains - - - 0.0000000000000000000000000000000001912 136.0
DYD3_k127_4672071_0 PFAM AMP-dependent synthetase and ligase K00666,K01911,K12508 - 6.2.1.26,6.2.1.34 8.422e-212 668.0
DYD3_k127_4672071_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 3.056e-209 654.0
DYD3_k127_4672071_10 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004564 329.0
DYD3_k127_4672071_11 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000742 331.0
DYD3_k127_4672071_12 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 329.0
DYD3_k127_4672071_13 e3 binding domain K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000007034 264.0
DYD3_k127_4672071_14 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000004535 261.0
DYD3_k127_4672071_2 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009195 464.0
DYD3_k127_4672071_3 Transketolase, pyrimidine binding domain K21417 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009186 450.0
DYD3_k127_4672071_4 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004616 408.0
DYD3_k127_4672071_5 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 374.0
DYD3_k127_4672071_6 PFAM cyclase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 359.0
DYD3_k127_4672071_7 Dehydrogenase E1 component K21416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000929 366.0
DYD3_k127_4672071_8 Branched-chain amino acid ATP-binding cassette transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 348.0
DYD3_k127_4672071_9 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008072 349.0
DYD3_k127_4741557_0 chain 5 L K00341 - 1.6.5.3 1.184e-279 872.0
DYD3_k127_4741557_1 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 1.495e-247 771.0
DYD3_k127_4741557_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 1.711e-247 771.0
DYD3_k127_4741557_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 565.0
DYD3_k127_4741557_4 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000002275 230.0
DYD3_k127_4741557_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000003753 209.0
DYD3_k127_4741557_6 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000513 201.0
DYD3_k127_4741557_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000000000000006705 167.0
DYD3_k127_4741557_8 periplasmic protein - - - 0.000000000000000000000000000000000000305 161.0
DYD3_k127_4770062_0 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases - - - 6.237e-205 646.0
DYD3_k127_4770062_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008782 325.0
DYD3_k127_4770062_10 AntiSigma factor - - - 0.0000000000000000000000003702 118.0
DYD3_k127_4770062_11 Glycine-zipper domain - - - 0.00000000001764 72.0
DYD3_k127_4770062_12 - - - - 0.0000001441 60.0
DYD3_k127_4770062_13 - - - - 0.000009591 56.0
DYD3_k127_4770062_2 response regulator K02483,K07661,K18073 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 323.0
DYD3_k127_4770062_3 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000000000000000000000000000000000000000000000006213 235.0
DYD3_k127_4770062_4 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000001396 159.0
DYD3_k127_4770062_5 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000002812 142.0
DYD3_k127_4770062_7 Heavy-metal resistance - - - 0.0000000000000000000000000003268 121.0
DYD3_k127_4770062_8 DsrE/DsrF-like family - - - 0.00000000000000000000000003766 115.0
DYD3_k127_4770062_9 Sh3 type 3 domain protein - - - 0.0000000000000000000000003699 113.0
DYD3_k127_4772722_0 4Fe-4S dicluster domain - - - 0.0 1206.0
DYD3_k127_4772722_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 606.0
DYD3_k127_4772722_2 acyl-CoA transferases carnitine dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003543 516.0
DYD3_k127_4772722_3 PFAM Malonyl-CoA decarboxylase K01578 - 4.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 415.0
DYD3_k127_4772722_4 FCD - - - 0.00000000000000000000000000000000000000000000000000000000000000000003997 238.0
DYD3_k127_4772722_5 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000007462 117.0
DYD3_k127_4825910_0 abc transporter K06020 - 3.6.3.25 4.538e-274 851.0
DYD3_k127_4825910_1 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 507.0
DYD3_k127_4825910_10 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000002867 183.0
DYD3_k127_4825910_11 chain release factor K15034 - - 0.000000000000000000000000000000000000000293 153.0
DYD3_k127_4825910_12 AMP-binding enzyme C-terminal domain - - - 0.0000000000000000000000000000001604 125.0
DYD3_k127_4825910_13 - - - - 0.0000006709 55.0
DYD3_k127_4825910_14 MgtC family K07507 - - 0.0001742 47.0
DYD3_k127_4825910_2 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 479.0
DYD3_k127_4825910_3 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 373.0
DYD3_k127_4825910_4 KR domain K00065 - 1.1.1.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005775 351.0
DYD3_k127_4825910_5 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007282 340.0
DYD3_k127_4825910_6 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002991 341.0
DYD3_k127_4825910_7 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 323.0
DYD3_k127_4825910_8 Protein of unknown function (DUF3300) - - - 0.00000000000000000000000000000000000000000000000000000000000000001825 241.0
DYD3_k127_4825910_9 Acyl-transferase - - - 0.0000000000000000000000000000000000000000000000000006773 190.0
DYD3_k127_4830036_0 HD domain - - - 4.423e-276 862.0
DYD3_k127_4830036_1 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 3.348e-237 749.0
DYD3_k127_4830036_10 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000001098 216.0
DYD3_k127_4830036_11 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000000005266 191.0
DYD3_k127_4830036_13 MarC family integral membrane protein K05595 - - 0.0000000000000000000000000000000000000000001981 167.0
DYD3_k127_4830036_14 Protein of unknown function (DUF2442) - - - 0.00000000000000000000000000000000001064 137.0
DYD3_k127_4830036_15 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.000000000000000000000000000000002829 130.0
DYD3_k127_4830036_16 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000006453 134.0
DYD3_k127_4830036_17 Thioesterase superfamily protein K10806 - - 0.00000000000000000001184 101.0
DYD3_k127_4830036_18 Thioesterase superfamily K10806 - - 0.00000000000000000002109 91.0
DYD3_k127_4830036_2 PFAM Acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006016 612.0
DYD3_k127_4830036_20 small protein containing a coiled-coil domain - - - 0.0000000000000004877 81.0
DYD3_k127_4830036_3 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 601.0
DYD3_k127_4830036_4 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009056 522.0
DYD3_k127_4830036_5 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 366.0
DYD3_k127_4830036_6 aminotransferase class V K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009806 371.0
DYD3_k127_4830036_7 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006118 328.0
DYD3_k127_4830036_8 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002346 274.0
DYD3_k127_4830036_9 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000003579 230.0
DYD3_k127_4840655_0 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002851 370.0
DYD3_k127_4840655_1 Transglutaminase/protease-like homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004975 329.0
DYD3_k127_4840655_2 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000224 292.0
DYD3_k127_4840655_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000006455 60.0
DYD3_k127_4851929_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.991e-318 981.0
DYD3_k127_4851929_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 5.605e-240 765.0
DYD3_k127_4851929_2 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 4.044e-221 703.0
DYD3_k127_4851929_3 2 iron, 2 sulfur cluster binding K00266,K00528,K02823 - 1.18.1.2,1.19.1.1,1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 475.0
DYD3_k127_4851929_4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 388.0
DYD3_k127_4851929_5 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000002366 170.0
DYD3_k127_4851929_6 membrane - - - 0.00000000002748 72.0
DYD3_k127_4872394_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 1.885e-219 687.0
DYD3_k127_4872394_1 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 452.0
DYD3_k127_4872394_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006025 448.0
DYD3_k127_4872394_3 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005378 377.0
DYD3_k127_4872394_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 362.0
DYD3_k127_4872394_5 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 338.0
DYD3_k127_4872394_6 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000643 240.0
DYD3_k127_4872394_7 pilus assembly protein FimV K08086 - - 0.0000000000000000000000000000000000000000000007252 177.0
DYD3_k127_4872394_8 PFAM Colicin V production protein K03558 - - 0.000000000000000000000000000000004978 135.0
DYD3_k127_4872394_9 Sporulation related domain - - - 0.00000000000000000000000946 109.0
DYD3_k127_4907376_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1426.0
DYD3_k127_4907376_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 346.0
DYD3_k127_4907376_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 317.0
DYD3_k127_4907376_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005069 247.0
DYD3_k127_4907376_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000000000000000000000000000000000000000002078 230.0
DYD3_k127_4907376_5 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000000000000000000000000000000000000000000003327 179.0
DYD3_k127_4907376_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000004706 169.0
DYD3_k127_4938924_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004482 499.0
DYD3_k127_4938924_1 CoA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005092 471.0
DYD3_k127_4938924_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000646 454.0
DYD3_k127_4938924_3 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000003117 221.0
DYD3_k127_495637_0 PFAM FAD linked oxidase domain protein K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 1.158e-231 725.0
DYD3_k127_495637_1 Sulfate transporter antisigma-factor antagonist STAS - - - 1.892e-230 739.0
DYD3_k127_495637_2 STAS domain K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 560.0
DYD3_k127_495637_3 glycolate oxidase iron-sulfur subunit K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 548.0
DYD3_k127_495637_4 FAD binding K11472 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004194 441.0
DYD3_k127_495637_5 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.00004633 46.0
DYD3_k127_4977945_0 Enoyl-CoA hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 374.0
DYD3_k127_4977945_1 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951 313.0
DYD3_k127_4977945_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000003061 196.0
DYD3_k127_4977945_3 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000006117 137.0
DYD3_k127_4977945_4 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000001162 128.0
DYD3_k127_4977945_5 EamA-like transporter family - - - 0.000000000000000000000000000004033 121.0
DYD3_k127_4977945_6 PFAM thioesterase superfamily protein K01075 - 3.1.2.23 0.000000000000000000000000002916 129.0
DYD3_k127_4977945_7 thioesterase K01075 - 3.1.2.23 0.00000000000000000000009413 114.0
DYD3_k127_5039441_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 541.0
DYD3_k127_5039441_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008155 482.0
DYD3_k127_5039441_10 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 335.0
DYD3_k127_5039441_11 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007416 319.0
DYD3_k127_5039441_12 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 311.0
DYD3_k127_5039441_13 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 308.0
DYD3_k127_5039441_14 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000001895 199.0
DYD3_k127_5039441_15 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000000000001074 167.0
DYD3_k127_5039441_16 PFAM phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.000000000000000000000000000000002644 139.0
DYD3_k127_5039441_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000000004946 120.0
DYD3_k127_5039441_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000004361 103.0
DYD3_k127_5039441_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 415.0
DYD3_k127_5039441_3 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 398.0
DYD3_k127_5039441_4 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 399.0
DYD3_k127_5039441_5 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004469 412.0
DYD3_k127_5039441_6 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007948 399.0
DYD3_k127_5039441_7 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 380.0
DYD3_k127_5039441_8 abc transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 364.0
DYD3_k127_5039441_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009975 346.0
DYD3_k127_509754_0 4-Hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 559.0
DYD3_k127_509754_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000434 544.0
DYD3_k127_509754_2 protein involved in response to NO K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003084 321.0
DYD3_k127_509754_3 abc transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 313.0
DYD3_k127_509754_4 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 300.0
DYD3_k127_509754_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000007899 197.0
DYD3_k127_512155_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 373.0
DYD3_k127_512155_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 378.0
DYD3_k127_512155_2 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000001938 185.0
DYD3_k127_512155_3 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000000000000004444 180.0
DYD3_k127_512155_4 Glycosyl transferase, family 2 - - - 0.0000000000002507 76.0
DYD3_k127_5179699_0 benzoyl-CoA oxygenase K15512 - 1.14.13.208 8.19e-198 621.0
DYD3_k127_5179699_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000002602 223.0
DYD3_k127_5179699_2 Phenylacetate-CoA oxygenase K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000001255 220.0
DYD3_k127_5179699_3 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000001646 203.0
DYD3_k127_5179699_4 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000001395 118.0
DYD3_k127_5179699_5 spectrin binding - - - 0.000000000000001863 85.0
DYD3_k127_5192528_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 1.542e-320 986.0
DYD3_k127_5192528_1 Urea ABC transporter ATP-binding protein urtd K11962 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 417.0
DYD3_k127_5192528_2 ABC transporter, ATP-binding protein K11963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 378.0
DYD3_k127_5192528_3 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 355.0
DYD3_k127_5192528_4 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 298.0
DYD3_k127_5192528_5 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000000000000000000000000000000000000000000000001639 215.0
DYD3_k127_5192528_6 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000000000000001187 180.0
DYD3_k127_5192528_7 Urease beta subunit K01429 - 3.5.1.5 0.0000000000000000000000000000000000000000000003749 168.0
DYD3_k127_5192528_8 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.00000000000000000000000000000000000000000000412 175.0
DYD3_k127_519253_0 dehydrogenase, E1 component K00164 - 1.2.4.2 0.0 1290.0
DYD3_k127_519253_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000003281 187.0
DYD3_k127_5193216_0 Hydantoinase/oxoprolinase K01473 - 3.5.2.14 1.047e-260 819.0
DYD3_k127_5193216_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000002442 227.0
DYD3_k127_5193216_2 COG0006 Xaa-Pro aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000002504 203.0
DYD3_k127_5193216_3 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000002179 210.0
DYD3_k127_5193216_4 alcohol dehydrogenase K00001,K00344 - 1.1.1.1,1.6.5.5 0.00000000000000000000000000000000000000000000008441 183.0
DYD3_k127_5214339_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 2.072e-244 776.0
DYD3_k127_5214339_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 613.0
DYD3_k127_5214339_2 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 433.0
DYD3_k127_5214339_3 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000003383 270.0
DYD3_k127_5214339_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000005731 151.0
DYD3_k127_5219259_0 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 2.027e-200 638.0
DYD3_k127_5219259_1 poly(R)-hydroxyalkanoic acid synthase K03821 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008107 530.0
DYD3_k127_5219259_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008931 359.0
DYD3_k127_5219259_3 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000000000000008441 201.0
DYD3_k127_5219259_4 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000004825 191.0
DYD3_k127_5219259_5 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000004554 147.0
DYD3_k127_5259705_0 FMN-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 572.0
DYD3_k127_5259705_1 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006948 406.0
DYD3_k127_5259705_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 302.0
DYD3_k127_5259705_3 of the double-stranded beta helix - - - 0.000000000000000000000000000000000000000000000000000000002408 205.0
DYD3_k127_5259705_4 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000006874 183.0
DYD3_k127_5259705_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000002401 178.0
DYD3_k127_5259705_6 Pfam Hemerythrin HHE - - - 0.00000000000000000001571 99.0
DYD3_k127_5259705_7 Uncharacterized conserved protein (DUF2249) - - - 0.00000000002566 72.0
DYD3_k127_5348534_0 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.0 1074.0
DYD3_k127_5348534_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 1.563e-280 867.0
DYD3_k127_5348534_2 Fis family transcriptional regulator - - - 1.636e-277 863.0
DYD3_k127_5348534_3 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005666 560.0
DYD3_k127_5348534_4 Pyridoxamine 5'-phosphate oxidase K09979 - - 0.000000000000000000000000000000000000000000000000001069 199.0
DYD3_k127_5348534_5 Uncharacterised protein family (UPF0261) - - - 0.0003759 47.0
DYD3_k127_5419278_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 2.253e-219 687.0
DYD3_k127_5419278_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 556.0
DYD3_k127_5419278_10 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000001822 136.0
DYD3_k127_5419278_11 - - - - 0.00000000000000000001152 96.0
DYD3_k127_5419278_12 protein conserved in bacteria K09937 - - 0.00000000000000000004628 90.0
DYD3_k127_5419278_2 Amidohydrolase K01686 - 4.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 501.0
DYD3_k127_5419278_3 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 494.0
DYD3_k127_5419278_4 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 418.0
DYD3_k127_5419278_5 PFAM sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 411.0
DYD3_k127_5419278_6 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 395.0
DYD3_k127_5419278_7 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007858 351.0
DYD3_k127_5419278_8 Haloacid dehalogenase-like hydrolase K20866 - 3.1.3.10 0.0000000000000000000000000000000000000000000000003094 182.0
DYD3_k127_5419278_9 CBS domain - - - 0.0000000000000000000000000000000000000000000003137 171.0
DYD3_k127_5440664_0 Belongs to the thiolase family K00626 - 2.3.1.9 4.615e-204 640.0
DYD3_k127_5440664_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009344 438.0
DYD3_k127_5440664_2 PFAM acyl-CoA dehydrogenase domain protein K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000253 228.0
DYD3_k127_5462579_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.886e-285 884.0
DYD3_k127_5462579_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 5.695e-217 679.0
DYD3_k127_5462579_2 homoserine dehydrogenase - - - 3.793e-204 643.0
DYD3_k127_5462579_3 Phytanoyl-CoA dioxygenase (PhyH) K10674 - 1.14.11.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 458.0
DYD3_k127_5462579_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 428.0
DYD3_k127_5462579_5 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 424.0
DYD3_k127_5462579_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004282 329.0
DYD3_k127_5462579_7 Cytidylate kinase-like family - - - 0.00000000000000000000000000000000000000000000000000000000004331 214.0
DYD3_k127_5462579_8 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.00000000000000000000000006437 123.0
DYD3_k127_5482072_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 1.203e-294 919.0
DYD3_k127_5482072_1 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 394.0
DYD3_k127_5482072_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 353.0
DYD3_k127_5482072_3 Trypsin K04771,K04772 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009118 356.0
DYD3_k127_5482072_4 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004989 275.0
DYD3_k127_5482072_5 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000002098 248.0
DYD3_k127_5482072_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000001098 156.0
DYD3_k127_5482072_7 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000000000000000575 111.0
DYD3_k127_5482072_8 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000001283 83.0
DYD3_k127_5494114_0 Hydantoinase/oxoprolinase - - - 1.481e-285 891.0
DYD3_k127_5494114_1 Hydantoinase B/oxoprolinase - - - 2.515e-282 884.0
DYD3_k127_5494114_2 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 513.0
DYD3_k127_5494114_3 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 327.0
DYD3_k127_5494114_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007085 344.0
DYD3_k127_5494114_5 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase K19200 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 313.0
DYD3_k127_5494114_6 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004981 265.0
DYD3_k127_5494114_7 Bile acid K03453 - - 0.0000000000000000000000000000002565 140.0
DYD3_k127_5494114_8 - - - - 0.00000000000000003823 86.0
DYD3_k127_5494114_9 - - - - 0.00000000001237 72.0
DYD3_k127_5504027_0 Belongs to the ABC transporter superfamily K02010,K10112 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005339 473.0
DYD3_k127_5504027_1 PFAM fumarylacetoacetate (FAA) hydrolase K18336 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 393.0
DYD3_k127_5504027_2 3-hydroxybutyrate dehydrogenase, type 2 K00019 GO:0000166,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003858,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006518,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006778,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009062,GO:0009237,GO:0009888,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016627,GO:0016628,GO:0017144,GO:0019184,GO:0019290,GO:0019395,GO:0019538,GO:0019748,GO:0019752,GO:0020027,GO:0021700,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030258,GO:0030855,GO:0032501,GO:0032502,GO:0032787,GO:0033013,GO:0034101,GO:0034440,GO:0034641,GO:0034645,GO:0036094,GO:0042168,GO:0042440,GO:0042541,GO:0042592,GO:0043043,GO:0043170,GO:0043249,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046395,GO:0046483,GO:0046950,GO:0046951,GO:0048037,GO:0048468,GO:0048469,GO:0048513,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050662,GO:0050801,GO:0051186,GO:0051188,GO:0051287,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055114,GO:0060429,GO:0061515,GO:0065007,GO:0065008,GO:0071695,GO:0071704,GO:0072329,GO:0097159,GO:0098771,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1902224 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008264 306.0
DYD3_k127_5504027_3 ABC-type sugar transport system, periplasmic component K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001191 272.0
DYD3_k127_5504027_4 TIGRFAM amidase, hydantoinase carbamoylase family K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000001885 261.0
DYD3_k127_5531630_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.0 1015.0
DYD3_k127_5531630_1 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 4.163e-240 756.0
DYD3_k127_5531630_10 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000002884 279.0
DYD3_k127_5531630_11 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001315 261.0
DYD3_k127_5531630_12 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000000000000512 195.0
DYD3_k127_5531630_13 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000000000003864 178.0
DYD3_k127_5531630_14 EamA-like transporter family - - - 0.00000000000000000000000000000000002594 146.0
DYD3_k127_5531630_15 - - - - 0.00000000000000000000000005149 114.0
DYD3_k127_5531630_16 - - - - 0.00000000000000000169 88.0
DYD3_k127_5531630_17 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000004342 53.0
DYD3_k127_5531630_2 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006165 603.0
DYD3_k127_5531630_3 AMP-binding enzyme C-terminal domain K00666,K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 570.0
DYD3_k127_5531630_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 497.0
DYD3_k127_5531630_5 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004583 400.0
DYD3_k127_5531630_6 Histidine kinase K02484,K07645 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002736 358.0
DYD3_k127_5531630_7 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 346.0
DYD3_k127_5531630_8 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 303.0
DYD3_k127_5531630_9 PFAM response regulator receiver K02483,K07666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002729 284.0
DYD3_k127_5551963_0 Aminotransferase class I and II K14261 - - 2.975e-221 690.0
DYD3_k127_5551963_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 627.0
DYD3_k127_5551963_10 Small Multidrug Resistance protein - - - 0.00000000000000000000000000000000000000000000009146 179.0
DYD3_k127_5551963_11 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 0.0000000000000000000000000000000000000002726 154.0
DYD3_k127_5551963_12 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000008968 139.0
DYD3_k127_5551963_2 GDP-mannose 4,6 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 546.0
DYD3_k127_5551963_3 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 519.0
DYD3_k127_5551963_4 PFAM glycosyl transferase family 39 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 488.0
DYD3_k127_5551963_5 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008961 406.0
DYD3_k127_5551963_6 Glycosyl transferase family 2 K10012 - 2.4.2.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 392.0
DYD3_k127_5551963_7 PFAM formyl transferase domain protein K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 357.0
DYD3_k127_5551963_8 Threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000003011 243.0
DYD3_k127_5551963_9 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000007231 219.0
DYD3_k127_5579079_0 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 315.0
DYD3_k127_5579079_1 Allophanate hydrolase subunit 2 K06350 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003649 280.0
DYD3_k127_5579079_2 Nitrile hydratase K01721,K20807 - 4.2.1.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000001154 262.0
DYD3_k127_5579079_3 allophanate hydrolase subunit 1 K06351 - - 0.000000000000000000000000000000000000000000000000000002169 198.0
DYD3_k127_5579079_4 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.000000000000000000000000000000000000003985 153.0
DYD3_k127_5579079_5 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000000000000000000000000000004435 124.0
DYD3_k127_5579079_6 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family - - - 0.0000000000000000000000000005876 126.0
DYD3_k127_5582428_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1386.0
DYD3_k127_5582428_1 2-methylcitrate dehydratase K01720 - 4.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 327.0
DYD3_k127_5582428_2 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001411 256.0
DYD3_k127_5584697_0 Atp-dependent helicase K03578 - 3.6.4.13 0.0 1167.0
DYD3_k127_5584697_1 2-nitropropane dioxygenase - - - 2.622e-216 678.0
DYD3_k127_5584697_2 Probable molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006599 299.0
DYD3_k127_5584697_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002197 270.0
DYD3_k127_5584697_4 DNA polymerase K02337 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000002743 226.0
DYD3_k127_5584697_5 Etoposide-induced protein 2.4 (EI24) - - - 0.000000000000000000000000000000000000000001644 166.0
DYD3_k127_5590879_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 439.0
DYD3_k127_5590879_1 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 372.0
DYD3_k127_5590879_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 299.0
DYD3_k127_5590879_3 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000001796 235.0
DYD3_k127_5590879_4 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.000000000000000000000000000000000000000000000000000000000000001067 228.0
DYD3_k127_5590879_5 PFAM Methylated-DNA- protein -cysteine S-methyltransferase DNA binding K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000097 166.0
DYD3_k127_5590879_6 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000000000000002513 126.0
DYD3_k127_5590879_7 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000000000007774 123.0
DYD3_k127_5590879_8 Yqey-like protein K09117 - - 0.0000000000000004613 81.0
DYD3_k127_5626879_0 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005918 573.0
DYD3_k127_5626879_1 Putative modulator of DNA gyrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 471.0
DYD3_k127_5626879_2 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000000000000000004982 164.0
DYD3_k127_5626879_3 Transglycosylase associated protein - - - 0.00000000001156 69.0
DYD3_k127_5641135_0 Methionine synthase K00549 - 2.1.1.14 1.382e-195 616.0
DYD3_k127_5641135_1 Belongs to the DapA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 509.0
DYD3_k127_5641135_10 Carbon monoxide dehydrogenase subunit G (CoxG) - - - 0.000000209 64.0
DYD3_k127_5641135_2 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 389.0
DYD3_k127_5641135_3 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 373.0
DYD3_k127_5641135_4 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 378.0
DYD3_k127_5641135_5 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 358.0
DYD3_k127_5641135_6 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 315.0
DYD3_k127_5641135_7 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006997 259.0
DYD3_k127_5641135_8 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000004501 239.0
DYD3_k127_5641135_9 Xylose isomerase-like TIM barrel - - - 0.0000000000000001301 80.0
DYD3_k127_5658840_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 530.0
DYD3_k127_5658840_1 MOFRL family K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003387 503.0
DYD3_k127_5658840_10 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000005174 129.0
DYD3_k127_5658840_11 Indolepyruvate ferredoxin oxidoreductase K00179 - 1.2.7.8 0.000000000000000000000009365 100.0
DYD3_k127_5658840_12 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000002927 70.0
DYD3_k127_5658840_2 Gentisate 1,2-dioxygenase K00450 - 1.13.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 465.0
DYD3_k127_5658840_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 451.0
DYD3_k127_5658840_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 329.0
DYD3_k127_5658840_5 esterase K01432 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006542 286.0
DYD3_k127_5658840_6 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008506 248.0
DYD3_k127_5658840_7 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000009039 224.0
DYD3_k127_5658840_8 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000001745 200.0
DYD3_k127_5658840_9 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000003063 190.0
DYD3_k127_5678678_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 2.443e-195 622.0
DYD3_k127_5678678_1 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 426.0
DYD3_k127_5678678_2 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 404.0
DYD3_k127_5678678_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 391.0
DYD3_k127_5678678_4 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 318.0
DYD3_k127_5722302_0 Histidine kinase K05962 - 2.7.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 438.0
DYD3_k127_5722302_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 344.0
DYD3_k127_5722302_2 periplasmic protein - - - 0.00000000003401 74.0
DYD3_k127_5722302_3 LTXXQ motif family protein - - - 0.0000000004647 70.0
DYD3_k127_5741115_0 AcyL-CoA dehydrogenase K06445 - - 1.43e-322 1006.0
DYD3_k127_5741115_1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components K06147 - - 4.57e-234 739.0
DYD3_k127_5741115_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 328.0
DYD3_k127_5741115_3 Methyltransferase K18911 - 2.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 319.0
DYD3_k127_5741115_4 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 304.0
DYD3_k127_5741115_5 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000000005513 232.0
DYD3_k127_5741115_6 Cysteine-rich domain K18928 - - 0.00000000000000000000008635 98.0
DYD3_k127_576959_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006085 338.0
DYD3_k127_576959_1 MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 328.0
DYD3_k127_576959_2 TonB C terminal K03646 - - 0.0000000000000000000000000000000000000000000000738 184.0
DYD3_k127_576959_3 Putative stress-induced transcription regulator - - - 0.0000000000000000000000000000000003305 139.0
DYD3_k127_576959_4 Biopolymer transport protein ExbD TolR K03560 - - 0.000000000000000000000000000000249 138.0
DYD3_k127_576959_5 Acyl-CoA thioesterase K07107 - - 0.00000000000000000000000000002038 131.0
DYD3_k127_5780319_0 B12 binding domain K00548 - 2.1.1.13 0.0 1669.0
DYD3_k127_5780319_1 PFAM major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 482.0
DYD3_k127_5780319_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008588 292.0
DYD3_k127_5780319_3 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K16165 - 3.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005686 278.0
DYD3_k127_5780319_4 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001126 277.0
DYD3_k127_5780319_5 AMP-binding enzyme C-terminal domain K04110,K20458 - 6.2.1.25,6.2.1.27,6.2.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000002269 251.0
DYD3_k127_5780319_6 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000003862 214.0
DYD3_k127_5780319_7 -Thioesterase K01075 - 3.1.2.23 0.00000000000000000000844 98.0
DYD3_k127_5799311_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01835 - 5.4.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004337 425.0
DYD3_k127_5799311_1 PFAM secretion protein HlyD family protein K01993,K16922 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008429 394.0
DYD3_k127_5799311_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 383.0
DYD3_k127_5799311_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006289 329.0
DYD3_k127_5799311_4 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000305 267.0
DYD3_k127_5799311_5 galactose-1-phosphate K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000001416 256.0
DYD3_k127_5799311_6 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000003037 205.0
DYD3_k127_5799311_7 part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes K14987 - - 0.000000000000000000000000000000000000000001372 173.0
DYD3_k127_5799311_8 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.000000000000000000000000000000002524 141.0
DYD3_k127_5799311_9 Response regulator of the LytR AlgR family - - - 0.0000000005747 64.0
DYD3_k127_5813974_0 Domain of unknown function (DUF3394) - - - 5.767e-304 944.0
DYD3_k127_5813974_1 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 454.0
DYD3_k127_5813974_2 Fumarate hydratase (Fumerase) K01677,K03779 - 4.2.1.2,4.2.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 461.0
DYD3_k127_5813974_3 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 370.0
DYD3_k127_5813974_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 351.0
DYD3_k127_5813974_5 Fumarate K01678,K03780 - 4.2.1.2,4.2.1.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 318.0
DYD3_k127_5813974_6 Chalcone isomerase-like - - - 0.00000000000000000000000000000000000000000002449 168.0
DYD3_k127_5813974_7 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.00000000000000000000000000000000703 136.0
DYD3_k127_5813974_8 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00245 - 1.3.5.4 0.00000000000000000000000000000004888 126.0
DYD3_k127_5813974_9 succinate dehydrogenase K00246 - - 0.0000000000000000000000000000002325 132.0
DYD3_k127_5832777_0 SMART alpha amylase catalytic sub domain K05343 - 3.2.1.1,5.4.99.16 0.0 1482.0
DYD3_k127_5832777_1 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 1.816e-291 908.0
DYD3_k127_5832777_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000954 530.0
DYD3_k127_5832777_3 Bacterial extracellular solute-binding protein K02027,K10236 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 334.0
DYD3_k127_5832777_4 Belongs to the ABC transporter superfamily K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 327.0
DYD3_k127_5832777_5 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 297.0
DYD3_k127_5832777_6 Binding-protein-dependent transport system inner membrane component K02026,K10238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 300.0
DYD3_k127_5832777_7 Binding-protein-dependent transport system inner membrane component K02025,K10237 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001135 296.0
DYD3_k127_5832777_8 PFAM Conserved TM helix repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006826 275.0
DYD3_k127_5832777_9 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000007274 242.0
DYD3_k127_5871880_0 Long-chain fatty acid--CoA ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 600.0
DYD3_k127_5871880_1 Aldehyde dehydrogenase family K15515 - 1.2.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 421.0
DYD3_k127_5871880_2 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 317.0
DYD3_k127_5871880_3 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000000000000000000000000003836 153.0
DYD3_k127_5876153_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 571.0
DYD3_k127_5876153_1 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 477.0
DYD3_k127_5876153_11 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000015 120.0
DYD3_k127_5876153_13 - - - - 0.000001522 51.0
DYD3_k127_5876153_14 Belongs to the UPF0758 family K03630 - - 0.0000161 53.0
DYD3_k127_5876153_2 Trypsin K04771,K04772 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 406.0
DYD3_k127_5876153_3 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 326.0
DYD3_k127_5876153_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000009564 224.0
DYD3_k127_5876153_5 Nucleotidyltransferase domain - - - 0.00000000000000000000000000000000000000000000000002335 186.0
DYD3_k127_5876153_6 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000001727 195.0
DYD3_k127_5876153_7 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000001011 162.0
DYD3_k127_5876153_8 TonB C terminal K03646 - - 0.00000000000000000000000000000000000000001206 160.0
DYD3_k127_5876153_9 - - - - 0.0000000000000000000000000000000001471 134.0
DYD3_k127_5898385_0 transporter, DctM subunit K11690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 482.0
DYD3_k127_5898385_1 extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005339 351.0
DYD3_k127_5898385_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005527 271.0
DYD3_k127_5898385_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000202 118.0
DYD3_k127_5898385_4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.0000000000000000000000003166 109.0
DYD3_k127_5904078_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 9.112e-233 730.0
DYD3_k127_5904078_1 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.734e-210 660.0
DYD3_k127_5904078_10 Aminotransferase K14155 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 373.0
DYD3_k127_5904078_11 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 327.0
DYD3_k127_5904078_12 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 291.0
DYD3_k127_5904078_13 Putative aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000539 287.0
DYD3_k127_5904078_14 Vitamin k epoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000034 268.0
DYD3_k127_5904078_15 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005612 259.0
DYD3_k127_5904078_16 Glutathione S-Transferase K00799 GO:0003674,GO:0003824,GO:0004364,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016740,GO:0016765,GO:0030611,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0055114 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000004925 260.0
DYD3_k127_5904078_17 CoA-binding protein K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000003215 223.0
DYD3_k127_5904078_18 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000004622 231.0
DYD3_k127_5904078_19 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000000000002816 212.0
DYD3_k127_5904078_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 602.0
DYD3_k127_5904078_20 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K06034 - 4.1.1.79 0.000000000000000000000000000000000000000000000000000000000004676 214.0
DYD3_k127_5904078_21 Carboxylesterase family K01066 - - 0.0000000000000000000000000000000000000000000000000000000001043 210.0
DYD3_k127_5904078_22 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000000000000000000000000009305 195.0
DYD3_k127_5904078_23 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.000000000000000000000000000000000000000000000007557 182.0
DYD3_k127_5904078_24 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.00000000000000000000000000000000000000002529 163.0
DYD3_k127_5904078_25 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000001517 159.0
DYD3_k127_5904078_26 Pfam:DUF59 - - - 0.00000000000000000000000002385 115.0
DYD3_k127_5904078_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000299 567.0
DYD3_k127_5904078_4 glycolate oxidase subunit GlcD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 522.0
DYD3_k127_5904078_5 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 500.0
DYD3_k127_5904078_6 Zinc-binding dehydrogenase K12957,K13953,K19961 - 1.1.1.1,1.1.1.258 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 437.0
DYD3_k127_5904078_7 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 392.0
DYD3_k127_5904078_8 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004508 383.0
DYD3_k127_5904078_9 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 361.0
DYD3_k127_5932193_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 437.0
DYD3_k127_5932193_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 415.0
DYD3_k127_5932193_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532 324.0
DYD3_k127_5932193_3 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 299.0
DYD3_k127_5932193_4 Glutathione S-transferase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001473 297.0
DYD3_k127_5932193_5 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000007071 246.0
DYD3_k127_5932193_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001243 244.0
DYD3_k127_6015232_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 4.72e-216 686.0
DYD3_k127_6015232_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 405.0
DYD3_k127_6015232_2 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 372.0
DYD3_k127_6015232_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 307.0
DYD3_k127_6015232_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000001568 252.0
DYD3_k127_6015232_5 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000005069 201.0
DYD3_k127_6015232_6 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000002728 130.0
DYD3_k127_6015232_7 - - - - 0.0000000000000397 75.0
DYD3_k127_605374_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 1.06e-236 744.0
DYD3_k127_605374_1 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000002703 217.0
DYD3_k127_605374_2 KR domain K00059 - 1.1.1.100 0.000000000000000000000003503 102.0
DYD3_k127_605374_3 Cupin - - - 0.0000000000000267 77.0
DYD3_k127_605374_4 Protein of unknown function (DUF2798) - - - 0.0000000000002415 73.0
DYD3_k127_6079842_0 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 5.845e-239 745.0
DYD3_k127_6079842_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 497.0
DYD3_k127_6079842_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 425.0
DYD3_k127_6079842_3 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467 441.0
DYD3_k127_6079842_4 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 407.0
DYD3_k127_6079842_5 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 342.0
DYD3_k127_6079842_6 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 294.0
DYD3_k127_6079842_7 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000481 219.0
DYD3_k127_6079842_8 DsrC like protein K11179 - - 0.00000000000000000000000000000000000001532 153.0
DYD3_k127_608387_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 1.288e-238 761.0
DYD3_k127_608387_1 helicase K03722 - 3.6.4.12 1.131e-224 725.0
DYD3_k127_608387_10 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002269 274.0
DYD3_k127_608387_11 transcriptional Regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001811 246.0
DYD3_k127_608387_12 Bacterial type II and III secretion system protein - - - 0.0000000000000000000000000000000000000000001607 168.0
DYD3_k127_608387_13 PFAM NLP P60 protein - - - 0.00000000000000000000000000000000000000000218 160.0
DYD3_k127_608387_14 energy transducer activity K03832 - - 0.00001786 56.0
DYD3_k127_608387_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K15509 - 1.1.1.308 6.67e-206 648.0
DYD3_k127_608387_3 COG1178 ABC-type Fe3 transport system, permease component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008416 558.0
DYD3_k127_608387_4 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008868 543.0
DYD3_k127_608387_5 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 518.0
DYD3_k127_608387_6 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 466.0
DYD3_k127_608387_7 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 454.0
DYD3_k127_608387_8 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008547 402.0
DYD3_k127_608387_9 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 307.0
DYD3_k127_6107104_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 5.591e-220 687.0
DYD3_k127_6107104_1 PFAM sigma-54 factor interaction domain-containing protein - - - 4.766e-197 645.0
DYD3_k127_6107104_2 Extracellular liganD-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 512.0
DYD3_k127_6107104_3 Belongs to the peptidase S1C family K04691,K04772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 473.0
DYD3_k127_6107104_4 Posttranslational modification, protein turnover, chaperones K03599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 326.0
DYD3_k127_6107104_5 Cytochrome C1 K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001444 290.0
DYD3_k127_6107104_6 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000764 259.0
DYD3_k127_6107104_7 stringent starvation protein B K03600 - - 0.00000000000000000000000000000000000000002704 156.0
DYD3_k127_6107104_8 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000000000000000000000000001665 123.0
DYD3_k127_6107104_9 ABC transporter K01995 - - 0.0000000000000000000000000007735 117.0
DYD3_k127_611653_0 Cytochrome D1 heme domain K15864 - 1.7.2.1,1.7.99.1 4.331e-292 904.0
DYD3_k127_611653_1 Glucose inhibited division protein A - - - 7.439e-231 724.0
DYD3_k127_611653_2 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009698 413.0
DYD3_k127_611653_3 cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 408.0
DYD3_k127_611653_4 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 362.0
DYD3_k127_611653_5 HAD-hyrolase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003501 274.0
DYD3_k127_611653_6 Adenylate guanylate cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000008692 195.0
DYD3_k127_611653_7 MAPEG family - - - 0.0000000000000000000000000000000000000003899 152.0
DYD3_k127_611653_8 Glycine-zipper domain - - - 0.0000000000000000000000000000000000000004438 160.0
DYD3_k127_611653_9 Cytochrome c K08738 - - 0.0000000000000000000000000006686 118.0
DYD3_k127_6118789_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1251.0
DYD3_k127_6118789_1 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 7.643e-313 965.0
DYD3_k127_6118789_10 PFAM NnrS family protein K07234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 328.0
DYD3_k127_6118789_11 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 291.0
DYD3_k127_6118789_12 Acetolactate synthase small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000004092 256.0
DYD3_k127_6118789_13 RNA polymerase K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005009 258.0
DYD3_k127_6118789_14 Sigma-70 region 2 - - - 0.00000000000000000000000000000000000000000000000000002034 192.0
DYD3_k127_6118789_15 AntiSigma factor - - - 0.0000000000000000000000000000000000000000000000003021 186.0
DYD3_k127_6118789_16 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.0000000000000000000000000000035 138.0
DYD3_k127_6118789_17 RDD family - - - 0.000000000000000000000000313 113.0
DYD3_k127_6118789_18 Protein of unknown function (DUF3106) - - - 0.00000000000000000000313 104.0
DYD3_k127_6118789_19 Protein of unknown function (DUF3619) - - - 0.0000000000001948 77.0
DYD3_k127_6118789_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.931e-211 674.0
DYD3_k127_6118789_20 TIGRFAM oligoendopeptidase, M3 family K08602 - - 0.00000002012 59.0
DYD3_k127_6118789_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003945 582.0
DYD3_k127_6118789_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 560.0
DYD3_k127_6118789_5 transport system periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 539.0
DYD3_k127_6118789_6 Permease, YjgP YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009673 396.0
DYD3_k127_6118789_7 Permease, YjgP YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 370.0
DYD3_k127_6118789_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 359.0
DYD3_k127_6118789_9 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004454 342.0
DYD3_k127_6155586_0 ABC 3 transport family K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009832 326.0
DYD3_k127_6155586_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007116 289.0
DYD3_k127_6155586_2 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000001308 270.0
DYD3_k127_6155586_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000002016 236.0
DYD3_k127_6155586_4 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000001036 235.0
DYD3_k127_6155586_5 Domain of unknown function (DUF4126) - - - 0.00000000000000000000000000000000000000000000000000000000008574 209.0
DYD3_k127_6155586_6 Protein of unknown function (DUF423) - - - 0.0000000000000000000000000000000000000000000000001276 179.0
DYD3_k127_6155586_7 AraC-like ligand binding domain - - - 0.00000000000000000000000000000002694 137.0
DYD3_k127_6166622_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 9.509e-235 741.0
DYD3_k127_6166622_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 614.0
DYD3_k127_6166622_10 Peptidase M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 308.0
DYD3_k127_6166622_11 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 302.0
DYD3_k127_6166622_12 COG0477 Permeases of the major facilitator superfamily K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008525 300.0
DYD3_k127_6166622_13 LysM domain K08086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000656 278.0
DYD3_k127_6166622_14 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000003106 231.0
DYD3_k127_6166622_15 type 4 pilus biogenesis protein K02656 - - 0.000000000000000000000000000000000000000000000000000000000003864 224.0
DYD3_k127_6166622_16 Enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000004806 207.0
DYD3_k127_6166622_17 Tetratricopeptide repeat-like domain - - - 0.000000000000000000000000000000000000000000000000000002599 202.0
DYD3_k127_6166622_18 Transcriptional regulator K15539 - - 0.0000000000000000000000000000001964 135.0
DYD3_k127_6166622_19 PFAM regulatory protein TetR - - - 0.000000000000000000000000000003726 127.0
DYD3_k127_6166622_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 557.0
DYD3_k127_6166622_20 Predicted membrane protein (DUF2306) - - - 0.0002496 43.0
DYD3_k127_6166622_3 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005076 552.0
DYD3_k127_6166622_4 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006524 534.0
DYD3_k127_6166622_5 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 503.0
DYD3_k127_6166622_6 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006967 482.0
DYD3_k127_6166622_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009923 373.0
DYD3_k127_6166622_8 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002941 333.0
DYD3_k127_6166622_9 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 334.0
DYD3_k127_616963_0 ABC transporter transmembrane region K02021 - - 4.033e-269 856.0
DYD3_k127_616963_1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031,K02032 - - 2.495e-250 787.0
DYD3_k127_616963_10 Glycosyltransferase family 28 C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007567 323.0
DYD3_k127_616963_11 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 305.0
DYD3_k127_616963_12 Belongs to the TrpC family K01609 - 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000003461 262.0
DYD3_k127_616963_13 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006778 247.0
DYD3_k127_616963_14 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000000000009924 229.0
DYD3_k127_616963_15 Glycosyl Transferase - - - 0.000000000000000000000000000000000000000000000000000000000005224 221.0
DYD3_k127_616963_16 regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000000000000000000005392 205.0
DYD3_k127_616963_17 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000005939 209.0
DYD3_k127_616963_18 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000000002 167.0
DYD3_k127_616963_19 - - - - 0.0000000000000000000000000000000000000000009497 175.0
DYD3_k127_616963_2 ABC-type dipeptide transport system periplasmic component K02035 - - 7.374e-232 752.0
DYD3_k127_616963_20 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000003476 140.0
DYD3_k127_616963_21 Gram-negative porin - - - 0.00000000000000000000000000000569 133.0
DYD3_k127_616963_22 - - - - 0.000000000000000000000216 111.0
DYD3_k127_616963_23 Required for insertion of 4Fe-4S clusters K15724 - - 0.00000000000005641 71.0
DYD3_k127_616963_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 2.473e-194 625.0
DYD3_k127_616963_4 Glycosyltransferase family 28 C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003626 571.0
DYD3_k127_616963_5 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 514.0
DYD3_k127_616963_6 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007552 513.0
DYD3_k127_616963_7 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007017 464.0
DYD3_k127_616963_8 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 411.0
DYD3_k127_616963_9 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000355 348.0
DYD3_k127_6173346_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 3.907e-280 875.0
DYD3_k127_6173346_1 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 3.872e-242 763.0
DYD3_k127_6173346_2 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.663e-219 690.0
DYD3_k127_6173346_3 Belongs to the GARS family K01945 - 6.3.4.13 2.239e-194 616.0
DYD3_k127_6173346_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 500.0
DYD3_k127_6173346_5 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 484.0
DYD3_k127_6173346_6 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009076 480.0
DYD3_k127_6175497_0 Oxidoreductase - - - 4.856e-206 661.0
DYD3_k127_6175497_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 307.0
DYD3_k127_6175497_2 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007181 295.0
DYD3_k127_6175497_3 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000003043 162.0
DYD3_k127_6175497_4 transcriptional regulator - - - 0.00000000000000000000000000000000002117 146.0
DYD3_k127_6205347_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 9.229e-273 847.0
DYD3_k127_6205347_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.528e-233 729.0
DYD3_k127_6205347_10 general secretion pathway protein K K02460 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003333 259.0
DYD3_k127_6205347_11 SmpB protein K03664 - - 0.000000000000000000000000000000000000000000000000000000000001841 212.0
DYD3_k127_6205347_13 Type II transport protein GspH K02457 - - 0.00000000000000000000000000000000000000000000000000000001846 204.0
DYD3_k127_6205347_14 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.00000000000000000000000000000000000000000000000000000002341 211.0
DYD3_k127_6205347_15 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000003249 199.0
DYD3_k127_6205347_16 Polyketide cyclase dehydrase and lipid transport - - - 0.0000000000000000000000000000000000001131 147.0
DYD3_k127_6205347_17 Type II secretion system protein C K02452 - - 0.0000000000000000000000000000000001836 137.0
DYD3_k127_6205347_18 Type II secretion system (T2SS), protein I - - - 0.00000000000000000000000000000003338 135.0
DYD3_k127_6205347_19 Type II secretion system (T2SS), protein M K02462 - - 0.000000000000000000000000000001943 131.0
DYD3_k127_6205347_2 Glycoside hydrolase 15-related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 641.0
DYD3_k127_6205347_20 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000000000008629 85.0
DYD3_k127_6205347_21 - - - - 0.0000000000000009834 86.0
DYD3_k127_6205347_22 COG0438 Glycosyltransferase - - - 0.000000101 54.0
DYD3_k127_6205347_23 Domain of unknown function (DUF4124) - - - 0.00002729 53.0
DYD3_k127_6205347_3 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006361 483.0
DYD3_k127_6205347_4 DinB superfamily K18912 - 1.14.99.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 443.0
DYD3_k127_6205347_5 GspL periplasmic domain K02461 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 435.0
DYD3_k127_6205347_6 ROK family K00886 - 2.7.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003883 333.0
DYD3_k127_6205347_7 Bacterial type II/III secretion system short domain K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005546 331.0
DYD3_k127_6205347_8 Type II secretion system (T2SS), protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005285 253.0
DYD3_k127_6205347_9 Type II secretion system (T2SS), protein J K02459 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000115 253.0
DYD3_k127_6218696_0 NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1204.0
DYD3_k127_6218696_1 TRAP transporter, solute receptor (TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 313.0
DYD3_k127_6233207_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1558.0
DYD3_k127_6233207_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1203.0
DYD3_k127_6233207_10 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 314.0
DYD3_k127_6233207_11 Belongs to the SUA5 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 284.0
DYD3_k127_6233207_12 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002832 282.0
DYD3_k127_6233207_13 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000003538 264.0
DYD3_k127_6233207_14 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002797 271.0
DYD3_k127_6233207_15 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000578 250.0
DYD3_k127_6233207_16 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000002206 163.0
DYD3_k127_6233207_17 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000004459 133.0
DYD3_k127_6233207_2 COG1180 Pyruvate-formate lyase-activating enzyme - - - 2.609e-233 731.0
DYD3_k127_6233207_3 Participates in both transcription termination and antitermination K02600 - - 3.395e-227 713.0
DYD3_k127_6233207_4 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 3.866e-211 664.0
DYD3_k127_6233207_5 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 573.0
DYD3_k127_6233207_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 355.0
DYD3_k127_6233207_7 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 347.0
DYD3_k127_6233207_8 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004346 343.0
DYD3_k127_6233207_9 CO dehydrogenase flavoprotein C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 314.0
DYD3_k127_624314_0 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 327.0
DYD3_k127_624314_1 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008314 322.0
DYD3_k127_624314_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 317.0
DYD3_k127_624314_3 import inner membrane translocase subunit Tim44 - - - 0.000000000000000000000000000000000000000000000000001014 198.0
DYD3_k127_624314_4 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000001224 171.0
DYD3_k127_624314_5 - - - - 0.0000000000000000000000000000000000000000000001477 181.0
DYD3_k127_624314_6 protein conserved in bacteria K03690 - - 0.00000000000000000000000000003789 126.0
DYD3_k127_6244451_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.254e-238 743.0
DYD3_k127_6244451_1 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006286 609.0
DYD3_k127_6244451_10 PFAM Ankyrin K10799 - 2.4.2.30 0.0000000000000000000000000000000000000000000000000000000001076 222.0
DYD3_k127_6244451_11 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000000007464 190.0
DYD3_k127_6244451_12 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000009089 187.0
DYD3_k127_6244451_13 diol metabolic process K01724 - 4.2.1.96 0.00000000000000000000000000000000000000003365 156.0
DYD3_k127_6244451_14 PFAM ribosomal protein L31 K02909 - - 0.000000000000000000000000001369 114.0
DYD3_k127_6244451_15 Putative prokaryotic signal transducing protein - - - 0.00000000000000000005929 98.0
DYD3_k127_6244451_16 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000001113 85.0
DYD3_k127_6244451_17 - - - - 0.0000000000001346 79.0
DYD3_k127_6244451_18 Family of unknown function (DUF1028) - - - 0.0000000000001938 73.0
DYD3_k127_6244451_19 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.0000003116 53.0
DYD3_k127_6244451_2 PFAM Peptidase M48 K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 492.0
DYD3_k127_6244451_3 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 441.0
DYD3_k127_6244451_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 349.0
DYD3_k127_6244451_5 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 321.0
DYD3_k127_6244451_6 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 305.0
DYD3_k127_6244451_7 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001781 245.0
DYD3_k127_6244451_8 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001442 227.0
DYD3_k127_6244451_9 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000001071 224.0
DYD3_k127_6258185_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 522.0
DYD3_k127_6258185_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006351,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0018130,GO:0019438,GO:0032774,GO:0034335,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042493,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 510.0
DYD3_k127_6258185_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006972 298.0
DYD3_k127_6258185_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.00005384 48.0
DYD3_k127_6343020_0 AMP-dependent synthetase - - - 2.378e-206 659.0
DYD3_k127_6343020_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 5.942e-202 640.0
DYD3_k127_6343020_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 585.0
DYD3_k127_6343020_3 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 596.0
DYD3_k127_6343020_4 modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 514.0
DYD3_k127_6343020_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 504.0
DYD3_k127_6343020_6 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 340.0
DYD3_k127_6343020_7 COG2057 Acyl CoA acetate 3-ketoacid CoA transferase, beta subunit K01040 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001287 298.0
DYD3_k127_6343020_8 Protein of unknown function (DUF2889) - - - 0.0000000000000000000000000000000000000000000000000000000000008046 215.0
DYD3_k127_6365251_0 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 367.0
DYD3_k127_6365251_1 Predicted metal-dependent hydrolase K07044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 312.0
DYD3_k127_6365251_2 4,5-dihydroxyphthalate decarboxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001805 272.0
DYD3_k127_6365251_3 2-hydroxychromene-2-carboxylate isomerase K14584 - 5.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000028 250.0
DYD3_k127_6365251_4 Belongs to the N-Me-Phe pilin family K02650,K02655 - - 0.000000000000000000000000000000000000006229 151.0
DYD3_k127_6365251_5 - - - - 0.00000000000000000001616 97.0
DYD3_k127_6379062_0 transport system fused permease components - - - 7.988e-222 703.0
DYD3_k127_6379062_1 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008342 509.0
DYD3_k127_6379062_2 C-terminal region of band_7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 402.0
DYD3_k127_6379062_3 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000506 272.0
DYD3_k127_6379062_4 2-Keto-4-pentenoate hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000006194 226.0
DYD3_k127_6379062_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000003511 147.0
DYD3_k127_6379062_6 NfeD-like C-terminal, partner-binding - - - 0.0000000000000004545 90.0
DYD3_k127_6379062_7 - - - - 0.000002143 57.0
DYD3_k127_6403964_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.0 1056.0
DYD3_k127_6403964_1 Acyl-CoA dehydrogenase, C-terminal domain K16047 - 1.14.14.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 329.0
DYD3_k127_6403964_2 CO dehydrogenase flavoprotein domain protein K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000972 286.0
DYD3_k127_6403964_3 MmgE/PrpD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001138 248.0
DYD3_k127_6403964_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006388 254.0
DYD3_k127_6403964_5 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000003928 235.0
DYD3_k127_6403964_6 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000001124 191.0
DYD3_k127_6403964_7 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000003175 184.0
DYD3_k127_6403964_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000007154 113.0
DYD3_k127_6420139_0 Male sterility protein K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 559.0
DYD3_k127_6420139_1 Belongs to the DegT DnrJ EryC1 family K13017 - 2.6.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 495.0
DYD3_k127_6420139_10 Methyltransferase domain - - - 0.00000000000000000001229 107.0
DYD3_k127_6420139_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 469.0
DYD3_k127_6420139_3 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 335.0
DYD3_k127_6420139_4 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003868 259.0
DYD3_k127_6420139_5 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000002691 216.0
DYD3_k127_6420139_6 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000002293 209.0
DYD3_k127_6420139_7 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000004521 182.0
DYD3_k127_6420139_8 TIGRFAM methyltransferase FkbM family - - - 0.000000000000000000000000000000000000000008448 166.0
DYD3_k127_6420139_9 Methyltransferase FkbM domain - - - 0.000000000000000000001132 106.0
DYD3_k127_6443172_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 7.327e-284 884.0
DYD3_k127_6443172_1 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 559.0
DYD3_k127_6443172_10 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000004412 168.0
DYD3_k127_6443172_11 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000008462 168.0
DYD3_k127_6443172_12 nitric oxide dioxygenase activity - - - 0.0000000000000000000000000000000000000000006698 161.0
DYD3_k127_6443172_13 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000002633 156.0
DYD3_k127_6443172_14 Receptor family ligand binding region K01999 - - 0.00000000000000000005681 103.0
DYD3_k127_6443172_15 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.000000000000001539 81.0
DYD3_k127_6443172_16 Glutamine amidotransferase class-I - - - 0.00004989 52.0
DYD3_k127_6443172_2 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007059 479.0
DYD3_k127_6443172_3 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 400.0
DYD3_k127_6443172_4 Polyprenyl synthetase K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 366.0
DYD3_k127_6443172_5 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 359.0
DYD3_k127_6443172_6 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000001328 253.0
DYD3_k127_6443172_7 Cache domain - - - 0.00000000000000000000000000000000000000000000000000000534 219.0
DYD3_k127_6443172_8 gag-polyprotein putative aspartyl protease - - - 0.0000000000000000000000000000000000000000000000000008749 190.0
DYD3_k127_6443172_9 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000003296 170.0
DYD3_k127_6456858_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 2.794e-267 832.0
DYD3_k127_6456858_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00179 - 1.2.7.8 6.294e-242 764.0
DYD3_k127_6456858_2 AMP-binding enzyme K12508 - 6.2.1.34 2.102e-229 726.0
DYD3_k127_6456858_3 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 2.83e-213 673.0
DYD3_k127_6456858_4 ribosomal rna small subunit methyltransferase - - - 2.041e-198 629.0
DYD3_k127_6456858_5 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004652 565.0
DYD3_k127_6456858_6 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 332.0
DYD3_k127_6456858_7 PFAM regulatory protein, MarR - - - 0.0000000000000000000000000000000000000000000000001235 182.0
DYD3_k127_6456858_8 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000001169 177.0
DYD3_k127_6468200_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 1.916e-197 632.0
DYD3_k127_6468200_1 Delta-aminolevulinic acid dehydratase K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 501.0
DYD3_k127_6468200_2 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000001665 227.0
DYD3_k127_6468200_3 protein involved in tolerance to divalent cations K03926 - - 0.0000000000000000000000000000000000000001263 153.0
DYD3_k127_6480757_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 9.763e-296 918.0
DYD3_k127_6480757_1 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 604.0
DYD3_k127_6480757_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 444.0
DYD3_k127_6480757_3 PFAM AFG1-family ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008867 420.0
DYD3_k127_6480757_4 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 413.0
DYD3_k127_6480757_5 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 324.0
DYD3_k127_6480757_6 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002606 277.0
DYD3_k127_6480757_7 Pentapeptide repeats (9 copies) - - - 0.0000000000000000000000000000000000000000768 166.0
DYD3_k127_6480757_8 Haem-degrading K11477 - - 0.000000000000000000000000000000004845 143.0
DYD3_k127_6480757_9 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000000000000000000003506 120.0
DYD3_k127_6504695_0 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004187 524.0
DYD3_k127_6504695_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 386.0
DYD3_k127_6504695_2 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001054 275.0
DYD3_k127_6504695_3 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002572 247.0
DYD3_k127_6504695_4 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000258 228.0
DYD3_k127_6504695_5 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000002799 194.0
DYD3_k127_6504695_6 Protein of unknown function (DUF3237) - - - 0.000000000000000000000000000000000000000000000000001831 187.0
DYD3_k127_6504695_7 Belongs to the UPF0307 family K09889 - - 0.0000000000000000000000000000000000002838 146.0
DYD3_k127_6532367_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 4.594e-204 650.0
DYD3_k127_6532367_1 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006227 523.0
DYD3_k127_6532367_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 481.0
DYD3_k127_6532367_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 478.0
DYD3_k127_6532367_4 Cell wall formation K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 383.0
DYD3_k127_6532367_5 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008866 357.0
DYD3_k127_6532367_6 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008877 323.0
DYD3_k127_6532367_7 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.0000000000000000000000000000000000000000000000000000007297 195.0
DYD3_k127_6532367_8 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000341 55.0
DYD3_k127_659616_0 D-galactarate dehydratase K16846,K16850 - 4.2.1.7,4.4.1.24 3.725e-217 682.0
DYD3_k127_659616_1 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 524.0
DYD3_k127_659616_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 327.0
DYD3_k127_659616_3 SAF K16845 - 4.4.1.24 0.00000000000000000000000000000000000000003562 153.0
DYD3_k127_659616_4 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.000000000000000000000003718 104.0
DYD3_k127_6661903_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 1.759e-292 920.0
DYD3_k127_6661903_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 2.607e-288 903.0
DYD3_k127_6661903_10 PFAM cytochrome c biogenesis protein, transmembrane region - - - 0.00000000000000000000000000000000000007583 152.0
DYD3_k127_6661903_11 - - - - 0.0000000000000000000000000000236 123.0
DYD3_k127_6661903_12 Copper binding periplasmic protein CusF - - - 0.00000000000000000000000002671 109.0
DYD3_k127_6661903_13 Heavy-metal-associated domain K07213 - - 0.00000000000000001037 85.0
DYD3_k127_6661903_14 Short C-terminal domain K08982 - - 0.00000000000000001191 85.0
DYD3_k127_6661903_15 Protein of unknown function (DUF2933) - - - 0.00000000000003151 74.0
DYD3_k127_6661903_16 LTXXQ motif family protein - - - 0.0000000000003817 79.0
DYD3_k127_6661903_17 Protein of unknown function (DUF1573) - - - 0.000003172 57.0
DYD3_k127_6661903_2 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 316.0
DYD3_k127_6661903_3 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008563 268.0
DYD3_k127_6661903_4 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000003865 262.0
DYD3_k127_6661903_5 periplasmic protein thiol disulfide K02199 - - 0.000000000000000000000000000000000000000000000000000000000000000001618 235.0
DYD3_k127_6661903_6 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000006074 232.0
DYD3_k127_6661903_7 helix_turn_helix, mercury resistance K19591,K19592 - - 0.00000000000000000000000000000000000000000000000003823 192.0
DYD3_k127_6661903_8 Protein of unknown function, DUF - - - 0.0000000000000000000000000000000000000000000000672 173.0
DYD3_k127_6661903_9 - - - - 0.0000000000000000000000000000000000000000000735 167.0
DYD3_k127_6700999_0 CoA-binding domain protein K09181 - - 0.0 1116.0
DYD3_k127_6700999_1 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 385.0
DYD3_k127_6700999_2 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K04090 - 1.2.7.8 0.0000000000000000000005847 97.0
DYD3_k127_6726304_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 1.796e-209 666.0
DYD3_k127_6726304_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008294 570.0
DYD3_k127_6726304_2 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 517.0
DYD3_k127_6726304_3 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002713 408.0
DYD3_k127_6726304_4 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 378.0
DYD3_k127_6726304_5 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000155 261.0
DYD3_k127_6726304_6 COG3245 Cytochrome c5 - - - 0.000000000000000000000000000000000003301 146.0
DYD3_k127_6726304_7 PFAM PTS system fructose subfamily IIA component K02821 - 2.7.1.194 0.000000000000000000000000000001145 139.0
DYD3_k127_6726304_8 Phosphotransferase System K11189 - - 0.0000000000000000000000000002332 116.0
DYD3_k127_6733452_0 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002825 403.0
DYD3_k127_6733452_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 396.0
DYD3_k127_6733452_2 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000292 269.0
DYD3_k127_6733452_3 - - - - 0.00000000000000000000000000000000000000000000000000000000004331 221.0
DYD3_k127_6747965_0 ribonuclease, Rne Rng family K08301 - - 1.785e-229 719.0
DYD3_k127_6747965_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 532.0
DYD3_k127_6747965_2 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000001191 216.0
DYD3_k127_6747965_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000006803 186.0
DYD3_k127_6747965_4 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000005464 141.0
DYD3_k127_6747965_5 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000009691 130.0
DYD3_k127_6747965_6 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000003488 121.0
DYD3_k127_6747965_7 Belongs to the amidase family K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.000000261 53.0
DYD3_k127_677294_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 2.924e-304 963.0
DYD3_k127_677294_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 1.706e-260 813.0
DYD3_k127_677294_10 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009822 289.0
DYD3_k127_677294_11 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001894 259.0
DYD3_k127_677294_12 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000007462 273.0
DYD3_k127_677294_13 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003743 256.0
DYD3_k127_677294_14 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001039 256.0
DYD3_k127_677294_15 PFAM Lytic transglycosylase catalytic - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009059 245.0
DYD3_k127_677294_16 Lysin motif K06194 - - 0.00000000000000000000000000000000000000000000000000000000000000006429 243.0
DYD3_k127_677294_17 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000000000000002916 182.0
DYD3_k127_677294_18 PFAM regulatory protein MerR - - - 0.000000000000000000000000000000000000000000000003782 175.0
DYD3_k127_677294_19 PFAM diacylglycerol kinase catalytic region - - - 0.00000000000000000000000000000000000000000000004701 182.0
DYD3_k127_677294_2 Bifunctional enoyl-CoA hydratase phosphate acetyltransferase K00625 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 597.0
DYD3_k127_677294_20 PFAM MOSC domain - - - 0.0000000000000000000000000000000000000000001566 169.0
DYD3_k127_677294_21 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000000000002756 148.0
DYD3_k127_677294_22 CNP1-like family - - - 0.0000000000000000000000000000000425 133.0
DYD3_k127_677294_23 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000001503 131.0
DYD3_k127_677294_24 - - - - 0.00000000000001436 77.0
DYD3_k127_677294_3 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 576.0
DYD3_k127_677294_4 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 530.0
DYD3_k127_677294_5 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 458.0
DYD3_k127_677294_6 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 439.0
DYD3_k127_677294_7 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 367.0
DYD3_k127_677294_8 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009171 318.0
DYD3_k127_677294_9 Transglycosylase SLT domain K08305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000971 309.0
DYD3_k127_6824851_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.537e-222 707.0
DYD3_k127_6824851_1 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008127 340.0
DYD3_k127_6824851_2 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 300.0
DYD3_k127_6824851_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009473 301.0
DYD3_k127_6824851_4 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009275 289.0
DYD3_k127_6824851_5 of the drug metabolite transporter (DMT) superfamily - - - 0.0001525 47.0
DYD3_k127_6852917_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 5.34e-225 732.0
DYD3_k127_6852917_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 363.0
DYD3_k127_6852917_2 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 332.0
DYD3_k127_6852917_3 PFAM ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001371 289.0
DYD3_k127_6852917_4 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000765 257.0
DYD3_k127_6852917_5 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000003216 157.0
DYD3_k127_6852917_6 Belongs to the binding-protein-dependent transport system permease family - - - 0.0001659 47.0
DYD3_k127_6862819_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 3.074e-248 787.0
DYD3_k127_6862819_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 1.246e-236 747.0
DYD3_k127_6862819_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000664 353.0
DYD3_k127_6862819_3 membrane - - - 0.0000000000000000000000000000000000002506 145.0
DYD3_k127_6862819_4 Bacterial protein of unknown function (DUF883) - - - 0.000000000000000000000000001961 116.0
DYD3_k127_6863567_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 7.324e-241 755.0
DYD3_k127_6863567_1 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 1.635e-226 720.0
DYD3_k127_6863567_10 PFAM Sporulation domain protein - - - 0.000000000000000000000000000000000000000000001237 173.0
DYD3_k127_6863567_11 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000000000002966 154.0
DYD3_k127_6863567_12 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000003414 120.0
DYD3_k127_6863567_13 - - - - 0.0000000000005972 70.0
DYD3_k127_6863567_14 Rhodanese Homology Domain - - - 0.0003525 44.0
DYD3_k127_6863567_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 5.71e-219 698.0
DYD3_k127_6863567_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 521.0
DYD3_k127_6863567_4 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008034 449.0
DYD3_k127_6863567_5 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 386.0
DYD3_k127_6863567_6 Glycosyltransferase Family 4 K02844 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 364.0
DYD3_k127_6863567_7 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006597 331.0
DYD3_k127_6863567_8 EVE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000007971 225.0
DYD3_k127_6863567_9 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000313 183.0
DYD3_k127_6891940_0 Class II Aldolase and Adducin N-terminal domain - - - 9.264e-265 829.0
DYD3_k127_6891940_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 395.0
DYD3_k127_6891940_10 positive regulation of growth - - - 0.00008782 48.0
DYD3_k127_6891940_2 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001596 232.0
DYD3_k127_6891940_3 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000000000000000000000000000000001028 217.0
DYD3_k127_6891940_4 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000001959 185.0
DYD3_k127_6891940_5 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000000004513 177.0
DYD3_k127_6891940_6 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000006798 176.0
DYD3_k127_6891940_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000002202 172.0
DYD3_k127_6891940_8 PIN domain - - - 0.0000000000000000000000004883 115.0
DYD3_k127_6891940_9 Domain of unknown function (DUF4936) - - - 0.0000000005948 70.0
DYD3_k127_695767_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1058.0
DYD3_k127_695767_1 Required for chromosome condensation and partitioning K03529 - - 4.842e-319 1015.0
DYD3_k127_695767_10 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 431.0
DYD3_k127_695767_11 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 415.0
DYD3_k127_695767_12 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005074 389.0
DYD3_k127_695767_13 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 396.0
DYD3_k127_695767_14 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008682 370.0
DYD3_k127_695767_15 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007422 349.0
DYD3_k127_695767_16 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 343.0
DYD3_k127_695767_17 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006086 344.0
DYD3_k127_695767_18 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003977 297.0
DYD3_k127_695767_19 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000654 264.0
DYD3_k127_695767_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 3.338e-311 975.0
DYD3_k127_695767_20 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000002422 267.0
DYD3_k127_695767_21 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009007,GO:0009008,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0032775,GO:0034641,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044728,GO:0046483,GO:0071704,GO:0090304,GO:0140096,GO:0140097,GO:1901360,GO:1901564 2.1.1.298 0.000000000000000000000000000000000000000000000000000000000000000000000000002143 276.0
DYD3_k127_695767_22 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002352 259.0
DYD3_k127_695767_23 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000642 237.0
DYD3_k127_695767_24 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.0000000000000000000000000000000000000000000000000000000000000000401 230.0
DYD3_k127_695767_25 Psort location Cytoplasmic, score 9.97 K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000001103 211.0
DYD3_k127_695767_26 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000003736 202.0
DYD3_k127_695767_27 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000959 184.0
DYD3_k127_695767_28 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000000001433 136.0
DYD3_k127_695767_29 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.00000000000000000000000000000001868 140.0
DYD3_k127_695767_3 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 3.977e-301 938.0
DYD3_k127_695767_30 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000001525 128.0
DYD3_k127_695767_31 - - - - 0.0000000000002489 71.0
DYD3_k127_695767_4 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 2.673e-244 771.0
DYD3_k127_695767_5 PFAM aminotransferase, class I K14267 - 2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 540.0
DYD3_k127_695767_6 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004826 516.0
DYD3_k127_695767_7 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 504.0
DYD3_k127_695767_8 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 472.0
DYD3_k127_695767_9 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 462.0
DYD3_k127_7040_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1515.0
DYD3_k127_7040_1 4Fe-4S dicluster domain - - - 4.27e-232 741.0
DYD3_k127_7040_10 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000000000000000000000000000000001107 258.0
DYD3_k127_7040_11 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004525 262.0
DYD3_k127_7040_12 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000000000000000000000000000000381 209.0
DYD3_k127_7040_13 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000007819 211.0
DYD3_k127_7040_14 enzyme involved in biosynthesis of extracellular polysaccharides - - - 0.000000000000000000000000000000000000000000000009283 172.0
DYD3_k127_7040_15 Nitrate reductase delta subunit - - - 0.000000000000000000000000000000003729 138.0
DYD3_k127_7040_16 Protein of unknown function (DUF3305) - - - 0.00000000000000000000000000000008641 139.0
DYD3_k127_7040_17 regulatory protein LysR - - - 0.0000000000000000000000000000001159 131.0
DYD3_k127_7040_18 - - - - 0.000000000000000000000000000009062 120.0
DYD3_k127_7040_19 Protein of unknown function (DUF3306) - - - 0.00000000000000000000001677 112.0
DYD3_k127_7040_2 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 2.667e-203 647.0
DYD3_k127_7040_20 Bacterial antitoxin of type II TA system, VapB - - - 0.00000000000000000003315 96.0
DYD3_k127_7040_21 - - - - 0.0000002214 57.0
DYD3_k127_7040_22 - - - - 0.00008191 48.0
DYD3_k127_7040_3 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 482.0
DYD3_k127_7040_4 4Fe-4S dicluster domain K00124,K07307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 392.0
DYD3_k127_7040_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 384.0
DYD3_k127_7040_6 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 381.0
DYD3_k127_7040_7 Prokaryotic cytochrome b561 K00127 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 348.0
DYD3_k127_7040_8 thiamine-containing compound biosynthetic process K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001116 287.0
DYD3_k127_7040_9 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003067 273.0
DYD3_k127_707608_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 9.669e-296 921.0
DYD3_k127_707608_1 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 9.684e-279 870.0
DYD3_k127_707608_10 Ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.00000000000000000000000000000000000000000000003392 171.0
DYD3_k127_707608_11 Transcriptional regulator, LysR K21703 - - 0.00000000000000000000000000000000000000000000005285 174.0
DYD3_k127_707608_2 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.182e-208 658.0
DYD3_k127_707608_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005404 531.0
DYD3_k127_707608_4 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 531.0
DYD3_k127_707608_5 Fructose-1-6-bisphosphatase, N-terminal domain K01086 - 3.1.3.11,3.1.3.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 490.0
DYD3_k127_707608_6 Phosphoribulokinase / Uridine kinase family K00855 - 2.7.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004693 480.0
DYD3_k127_707608_7 subfamily IA, variant 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000002271 243.0
DYD3_k127_707608_8 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000006605 214.0
DYD3_k127_707608_9 Protein of unknown function (DUF971) - - - 0.000000000000000000000000000000000000000000000000000000001824 203.0
DYD3_k127_7137888_0 Dehydrogenase K00382 - 1.8.1.4 3.636e-258 830.0
DYD3_k127_7137888_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 532.0
DYD3_k127_7137888_2 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001013 247.0
DYD3_k127_7137888_3 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.000000000000000000000000000000000000000000000000000000002603 202.0
DYD3_k127_7163292_0 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 402.0
DYD3_k127_7163292_1 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004756 364.0
DYD3_k127_7163292_2 Flavodoxin domain K00230 - 1.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000158 240.0
DYD3_k127_7163292_3 phytoene K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000002411 211.0
DYD3_k127_7202157_0 e1 component (alpha subunit) K00166 - 1.2.4.4 1.028e-202 637.0
DYD3_k127_7202157_1 Transketolase, C-terminal domain K00167 - 1.2.4.4 4.869e-200 625.0
DYD3_k127_7202157_2 protein, hemolysin III K11068 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009415 296.0
DYD3_k127_7202157_3 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002517 243.0
DYD3_k127_7202157_4 e3 binding domain K09699 - 2.3.1.168 0.000000000000000000000000000000000000000000004948 168.0
DYD3_k127_7202157_5 Aminoacyl-tRNA editing domain K19055 - - 0.00000000000000000000000000000000000008605 147.0
DYD3_k127_743954_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 5.246e-229 723.0
DYD3_k127_743954_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 407.0
DYD3_k127_743954_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 365.0
DYD3_k127_743954_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007202 342.0
DYD3_k127_743954_4 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 293.0
DYD3_k127_743954_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000007445 226.0
DYD3_k127_743954_6 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000001672 206.0
DYD3_k127_743954_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000003533 190.0
DYD3_k127_743954_8 Belongs to the skp family K06142 - - 0.00000000000000000000000000000000000000000000001362 184.0
DYD3_k127_76324_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 2.908e-197 625.0
DYD3_k127_76324_1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006129 309.0
DYD3_k127_76324_2 PFAM ATP-binding region, ATPase domain protein K02486 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 309.0
DYD3_k127_76324_3 regulator - - - 0.000000000000000000000000000000000000000000000000000000000003565 228.0
DYD3_k127_76324_4 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.0000000000000000000000000000000000000000000000000004014 193.0
DYD3_k127_76324_5 RNA-metabolising metallo-beta-lactamase K07576 - - 0.00000000000000000000000005064 111.0
DYD3_k127_76324_6 helix_turn_helix, Lux Regulon K02479,K07684 - - 0.000000000007463 77.0
DYD3_k127_791112_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1288.0
DYD3_k127_791112_1 CoA-transferase family III K07749 - 2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 607.0
DYD3_k127_791112_2 NAD NADP octopine nopaline dehydrogenase K04940 - 1.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 498.0
DYD3_k127_791112_3 Methylmalonyl-CoA mutase K01847,K01848,K14447,K20906 - 5.4.99.2,5.4.99.63,5.4.99.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 397.0
DYD3_k127_791112_4 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 338.0
DYD3_k127_791112_5 2Fe-2S -binding K03518,K13483 - 1.2.5.3 0.0000000000000000000000000000000000000000000008827 169.0
DYD3_k127_791112_6 V4R - - - 0.0000000000000000000000000000000008864 135.0
DYD3_k127_791112_7 Catalyzes the NAD( )-dependent oxidation of L-carnitine to 3-dehydrocarnitine K00074 - 1.1.1.157 0.0000001734 63.0
DYD3_k127_807784_0 CoA binding domain - - - 2.575e-299 933.0
DYD3_k127_807784_1 ABC transporter - - - 1.994e-237 747.0
DYD3_k127_807784_10 Disulphide bond corrector protein DsbC K04084,K08344 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000002753 202.0
DYD3_k127_807784_11 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.000000000000000000000000000000000000000006886 156.0
DYD3_k127_807784_12 HIT domain K19710 - 2.7.7.53 0.0000000000000000000000000000000000004285 146.0
DYD3_k127_807784_13 PIN domain K07065 - - 0.000000000000000000006591 100.0
DYD3_k127_807784_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005903 598.0
DYD3_k127_807784_3 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 526.0
DYD3_k127_807784_4 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 414.0
DYD3_k127_807784_5 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 330.0
DYD3_k127_807784_6 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007329 276.0
DYD3_k127_807784_7 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003154 243.0
DYD3_k127_807784_8 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002305 232.0
DYD3_k127_807784_9 Thioesterase - - - 0.00000000000000000000000000000000000000000000000000000001258 210.0
DYD3_k127_81314_0 Amino acid permease - - - 4.445e-280 875.0
DYD3_k127_81314_1 endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000000000937 183.0
DYD3_k127_81314_2 protein conserved in bacteria K09966 - - 0.000000000000000000000000000000000000000004155 156.0
DYD3_k127_81314_3 TPR repeat - - - 0.00000000000000000000000000000197 123.0
DYD3_k127_81314_4 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000001255 98.0
DYD3_k127_859909_0 Competence protein ComEC Rec2 K02238 - - 2.798e-217 698.0
DYD3_k127_859909_1 Protein of unknown function (DUF1538) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 609.0
DYD3_k127_859909_10 (twin-arginine translocation) pathway signal - - - 0.0000000000000000000000000000000000000000000000000000000000000004601 224.0
DYD3_k127_859909_11 - - - - 0.000000000000000000000000000000000000000000000000000006631 204.0
DYD3_k127_859909_12 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.0000000000000000000000000000000000000000000000000001656 190.0
DYD3_k127_859909_13 Nitrogen regulatory protein P-II - - - 0.0000000000000000000000000000000000000002009 171.0
DYD3_k127_859909_14 homoserine transmembrane transporter activity K03329 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1903825,GO:1905039 - 0.000000000000000000000000000000000000001231 157.0
DYD3_k127_859909_15 ThiS family K03636 - - 0.0000000000000000000000000721 108.0
DYD3_k127_859909_16 - - - - 0.00000000000000000000001593 104.0
DYD3_k127_859909_17 Dodecin K09165 - - 0.00000000000000000000005592 102.0
DYD3_k127_859909_18 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.0000000000000000000007461 102.0
DYD3_k127_859909_19 Thioredoxin-like K07152 - - 0.000000000000000000002309 99.0
DYD3_k127_859909_2 arginine decarboxylase K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 601.0
DYD3_k127_859909_3 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 578.0
DYD3_k127_859909_4 Lipoprotein-releasing system permease protein K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007652 559.0
DYD3_k127_859909_5 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 485.0
DYD3_k127_859909_6 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003603 368.0
DYD3_k127_859909_7 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005169 366.0
DYD3_k127_859909_8 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 295.0
DYD3_k127_859909_9 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005404 261.0
DYD3_k127_90248_0 Domain of unknown function (DUF4070) - - - 3.14e-225 707.0
DYD3_k127_90248_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K01897 - 6.2.1.3 8.601e-207 670.0
DYD3_k127_90248_2 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 387.0
DYD3_k127_90248_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 385.0
DYD3_k127_90248_4 cation diffusion facilitator family transporter K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 345.0
DYD3_k127_90248_5 Aldolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005175 293.0
DYD3_k127_90248_6 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001333 263.0
DYD3_k127_90248_7 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000663 203.0
DYD3_k127_90248_9 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000007025 64.0
DYD3_k127_923541_0 Belongs to the Orn Lys Arg decarboxylase class-II family. NspC subfamily K13747 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0019842,GO:0030170,GO:0034641,GO:0036094,GO:0042401,GO:0042710,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0044010,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044764,GO:0045312,GO:0046204,GO:0046983,GO:0048037,GO:0050662,GO:0051704,GO:0070279,GO:0071704,GO:0097159,GO:0097164,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.1.1.96 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 567.0
DYD3_k127_923541_1 Saccharopine dehydrogenase C-terminal domain K00290,K13746 - 1.5.1.43,1.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 401.0
DYD3_k127_923541_2 Arginase family K01476,K01479,K01480,K12255,K18459 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008783,GO:0009058,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0030145,GO:0034641,GO:0042401,GO:0043167,GO:0043169,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.1,3.5.3.11,3.5.3.17,3.5.3.7,3.5.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 388.0
DYD3_k127_92619_0 Hydantoinase/oxoprolinase N-terminal region - - - 6.393e-231 738.0
DYD3_k127_92619_1 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 3.625e-212 665.0
DYD3_k127_92619_10 Alpha/beta hydrolase family K01055 - 3.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002688 284.0
DYD3_k127_92619_11 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186,K16875 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000002731 257.0
DYD3_k127_92619_12 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001063 265.0
DYD3_k127_92619_13 - - - - 0.0000000000000000000000000000000000000000004575 164.0
DYD3_k127_92619_14 Thioesterase superfamily - - - 0.000000000000000000000000000000000004245 157.0
DYD3_k127_92619_15 - - - - 0.0000000000000000000000000000000009918 145.0
DYD3_k127_92619_16 DsrE/DsrF/DrsH-like family - - - 0.00000000000000000000000000000001277 131.0
DYD3_k127_92619_17 Cupin 2, conserved barrel K21700 - - 0.0000000000000000000000000000002815 125.0
DYD3_k127_92619_18 - - - - 0.00000000000000000000000000002995 122.0
DYD3_k127_92619_19 Radical SAM - - - 0.000000000000000000000000000184 116.0
DYD3_k127_92619_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008125 575.0
DYD3_k127_92619_20 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000003684 113.0
DYD3_k127_92619_21 sulfur carrier activity K04085 - - 0.000000000000000000000004361 103.0
DYD3_k127_92619_22 Protein of unknown function (DUF3567) - - - 0.000000000000002815 79.0
DYD3_k127_92619_3 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 552.0
DYD3_k127_92619_4 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 522.0
DYD3_k127_92619_5 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 503.0
DYD3_k127_92619_6 PFAM multi antimicrobial extrusion protein MatE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 398.0
DYD3_k127_92619_7 Uncharacterized protein conserved in bacteria (DUF2219) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 340.0
DYD3_k127_92619_8 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006594 320.0
DYD3_k127_92619_9 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 302.0
DYD3_k127_979149_0 Heat shock 70 kDa protein K04043 - - 0.0 1010.0
DYD3_k127_979149_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003463 575.0
DYD3_k127_979149_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003188 438.0
DYD3_k127_979149_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003562 354.0
DYD3_k127_979149_4 Response regulator of the LytR AlgR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007013 256.0
DYD3_k127_979149_5 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000000000000000002577 165.0
DYD3_k127_979149_6 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000008798 151.0
DYD3_k127_979149_7 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000004437 133.0