Overview

ID MAG00967
Name DYD3_bin.4
Sample SMP0027
Taxonomy
Kingdom Archaea
Phylum Thermoplasmatota
Class E2
Order JACPAO01
Family JAHFTW01
Genus JAHFTW01
Species
Assembly information
Completeness (%) 68.52
Contamination (%) 0.89
GC content (%) 67.0
N50 (bp) 9,092
Genome size (bp) 1,626,794

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1227

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1004933_0 ATP-dependent helicase activity K10844 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000001268 237.0
DYD3_k127_1004933_1 - - - - 0.000000000000000000000000000000002584 147.0
DYD3_k127_1004933_2 Ribosomal protein S8e K02995 GO:0000462,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904 - 0.0000000000000000000000002383 108.0
DYD3_k127_1004933_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP K03105 - - 0.0000000005228 66.0
DYD3_k127_1004933_4 protein conserved in archaea - - - 0.00005449 52.0
DYD3_k127_1029403_0 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000001952 117.0
DYD3_k127_1029403_1 Threonyl alanyl tRNA synthetase SAD K01872 - 6.1.1.7 0.00001119 52.0
DYD3_k127_1035575_0 PFAM elongation factor Tu domain 2 - - - 0.0000000000000000000000000000000000000000000000000000000005797 214.0
DYD3_k127_1035575_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00009621 51.0
DYD3_k127_105696_0 Transcriptional regulator, ArsR family - - - 0.00000000000000000000000000001706 124.0
DYD3_k127_1064579_0 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000606 160.0
DYD3_k127_1064579_1 Putative adhesin - - - 0.00001352 56.0
DYD3_k127_1064579_2 PKD domain - - - 0.0009532 50.0
DYD3_k127_1138493_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006976 551.0
DYD3_k127_1138493_1 ATP-NAD kinase - - - 0.0000000000000000000000000000000000000000000000000000000000003391 227.0
DYD3_k127_1138493_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00000000000000000000000000000000000002515 149.0
DYD3_k127_1138493_3 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000006022 145.0
DYD3_k127_1138493_4 Defective in exine formation - - - 0.000000005425 66.0
DYD3_k127_1138493_5 Domain of unknown function (DUF1929) - - - 0.000002257 61.0
DYD3_k127_1242835_0 belongs to the aldehyde dehydrogenase family K00130,K00151,K10217 - 1.2.1.32,1.2.1.60,1.2.1.8,1.2.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000831 280.0
DYD3_k127_1242835_1 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000000000000000001061 190.0
DYD3_k127_1259340_0 DegT/DnrJ/EryC1/StrS aminotransferase family K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 452.0
DYD3_k127_1259340_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 329.0
DYD3_k127_1259340_10 Transcriptional regulator K22206 - - 0.0000000000000006018 87.0
DYD3_k127_1259340_11 PFAM regulatory protein, ArsR - - - 0.00000000000005999 83.0
DYD3_k127_1259340_12 PFAM Peptidase C1A, papain C-terminal - - - 0.00000003699 65.0
DYD3_k127_1259340_13 - - - - 0.00002451 55.0
DYD3_k127_1259340_14 Serine aminopeptidase, S33 K13704 - 3.1.1.23 0.000246 53.0
DYD3_k127_1259340_2 TIGRFAM geranylgeranyl reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000009235 241.0
DYD3_k127_1259340_3 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000000000000000000000000000000000000000000000000000000009427 222.0
DYD3_k127_1259340_4 TIGRFAM ABC transporter, periplasmic binding protein, thiB subfamily K02064 - - 0.00000000000000000000000000000000000000000000000000009276 201.0
DYD3_k127_1259340_5 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000000000000000000000000000002268 195.0
DYD3_k127_1259340_6 pre-rRNA processing protein involved in ribosome biogenesis K09140 - - 0.0000000000000000000000000000000000000000008037 164.0
DYD3_k127_1259340_7 Protein of unknown function (DUF531) K09725 - - 0.0000000000000000000000000000000002555 141.0
DYD3_k127_1259340_8 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K04794 - 3.1.1.29 0.00000000000000000000000000000000919 133.0
DYD3_k127_1259340_9 PFAM Binding-protein-dependent transport system inner membrane component K02063 - - 0.00000000000000000004909 100.0
DYD3_k127_1261897_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009361 473.0
DYD3_k127_1261897_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 347.0
DYD3_k127_1261897_2 HELICc2 K03722,K10844 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 340.0
DYD3_k127_1261897_3 metal cluster binding K06940 - - 0.000000000000005584 83.0
DYD3_k127_1261897_4 Rieske-like [2Fe-2S] domain K00363 - 1.7.1.15 0.0000000000003414 80.0
DYD3_k127_1261897_5 - - - - 0.000008618 52.0
DYD3_k127_1261897_6 Threonyl and Alanyl tRNA synthetase second additional domain K01872,K07050 - 6.1.1.7 0.00002022 54.0
DYD3_k127_1264463_0 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 3.791e-225 709.0
DYD3_k127_1264463_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 561.0
DYD3_k127_1264463_10 transcriptional regulators - - - 0.00027 48.0
DYD3_k127_1264463_2 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 406.0
DYD3_k127_1264463_3 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 317.0
DYD3_k127_1264463_4 COG1404 Subtilisin-like serine proteases K14645 GO:0005575,GO:0005576 - 0.00000000000000000000000000000000000000000000000000000000000000000001019 258.0
DYD3_k127_1264463_5 Activator of Hsp90 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000003291 208.0
DYD3_k127_1264463_6 glyoxalase K04750 - - 0.00000000000000000000000000000000001238 146.0
DYD3_k127_1264463_7 transcriptional - - - 0.000000000000000000000000000000001666 134.0
DYD3_k127_1264463_8 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000003004 132.0
DYD3_k127_1264463_9 GDP-mannose mannosyl hydrolase activity K01515,K03574 - 3.6.1.13,3.6.1.55 0.000000000000000000003419 99.0
DYD3_k127_1266100_0 cellulose binding - - - 0.00000000000000000000001122 111.0
DYD3_k127_1266100_1 NYN domain - - - 0.0000000009432 70.0
DYD3_k127_1266100_2 Copper binding proteins, plastocyanin/azurin family - - - 0.0000001776 59.0
DYD3_k127_1266100_3 - - - - 0.0000003872 55.0
DYD3_k127_1266100_4 Winged helix-turn-helix DNA-binding - - - 0.00007287 49.0
DYD3_k127_1278252_0 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 316.0
DYD3_k127_1278252_1 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03432 GO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0019773,GO:0032991,GO:0044424,GO:0044464,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007523 299.0
DYD3_k127_1278252_2 Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'- 5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails K11600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009566 280.0
DYD3_k127_1278252_3 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site K12589 GO:0000177,GO:0000178,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0017091,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354 - 0.0000000000000000000000000000000000000000000000000000000000000008707 229.0
DYD3_k127_1278252_4 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome K03679 GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016180,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0032991,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043144,GO:0043170,GO:0043628,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071034,GO:0071043,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354 - 0.00000000000000000000000000000000000000000000000000000003274 216.0
DYD3_k127_1278252_5 Shwachman-Bodian-Diamond syndrome (SBDS) protein K14574 - - 0.00000000000000000000000000000000000000000000000000000239 211.0
DYD3_k127_1278252_6 Nucleotidyl transferase K00966 - 2.7.7.13 0.0000000000000000000000000000000000000000000000001129 190.0
DYD3_k127_1278252_7 PRC-barrel domain - - - 0.00000000000000034 81.0
DYD3_k127_1278252_8 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.0000000000004719 83.0
DYD3_k127_1319546_0 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002424 346.0
DYD3_k127_1319546_1 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K17830 - 1.3.1.101,1.3.7.11 0.000000000000000000000000000000000000000000000000000000000000000000000000002838 274.0
DYD3_k127_1319546_2 UbiA prenyltransferase family K17105 - 2.5.1.42 0.00000000000000000000000000000002178 136.0
DYD3_k127_1328692_0 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 393.0
DYD3_k127_1328692_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000002068 139.0
DYD3_k127_1330216_0 glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000001866 256.0
DYD3_k127_1352031_0 COG0531 Amino acid transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003459 381.0
DYD3_k127_1352031_1 Belongs to the universal ribosomal protein uS2 family K02967 GO:0000028,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0031123,GO:0031125,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005522 269.0
DYD3_k127_1352031_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03055 - 2.7.7.6 0.000000000000001057 79.0
DYD3_k127_1355125_0 glutamine synthetase K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008826 494.0
DYD3_k127_1355125_1 PFAM regulatory protein AsnC Lrp family K05800 - - 0.00000001257 60.0
DYD3_k127_1355125_2 Carboxypeptidase regulatory-like domain - - - 0.0001327 53.0
DYD3_k127_1378810_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001832 283.0
DYD3_k127_1378810_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000002895 153.0
DYD3_k127_1378810_2 transcription regulator activity - - - 0.0000000000000001889 81.0
DYD3_k127_1378810_3 PrcB C-terminal - - - 0.00001773 54.0
DYD3_k127_1378810_4 Uncharacterized protein containing a Zn-ribbon (DUF2116) - - - 0.0001269 48.0
DYD3_k127_1393169_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 333.0
DYD3_k127_1393169_1 SnoaL-like polyketide cyclase - - - 0.00000000000000000006313 98.0
DYD3_k127_1393169_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000009656 67.0
DYD3_k127_1444117_0 Acetyl-CoA acetyltransferase K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 434.0
DYD3_k127_1444117_1 PFAM Aminotransferase class I and II K05825 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 411.0
DYD3_k127_1444117_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000001172 187.0
DYD3_k127_1513490_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007375 436.0
DYD3_k127_1513490_1 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000007931 233.0
DYD3_k127_1513490_2 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000002576 194.0
DYD3_k127_1513490_3 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000002939 192.0
DYD3_k127_1513490_4 Acetyltransferase (GNAT) domain - - - 0.000005014 58.0
DYD3_k127_1532032_0 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 293.0
DYD3_k127_1532032_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960,K20810 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050270 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000000000000000000000000000000000000000000000001493 196.0
DYD3_k127_1532032_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000009443 121.0
DYD3_k127_1540571_0 Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 424.0
DYD3_k127_1540571_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K17884 - 2.7.8.39,2.7.8.5 0.000000000000000000000000000000000000000000002924 176.0
DYD3_k127_1540571_2 Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates K18532 - 2.7.4.3 0.00000000000000000000001871 113.0
DYD3_k127_1551527_0 PFAM Phosphoribosyl transferase domain K07100 - - 0.00000000000000000000000000000000000000000000000000002688 196.0
DYD3_k127_1551527_1 Dodecin K09165 - - 0.0000000003732 64.0
DYD3_k127_1564247_0 Belongs to the UPF0219 family K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004794 421.0
DYD3_k127_1564247_1 PFAM Thiolase K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 414.0
DYD3_k127_1564344_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000001383 247.0
DYD3_k127_1564344_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000002786 154.0
DYD3_k127_1564344_2 PFAM glycosyl transferase family 39 K00728 - 2.4.1.109 0.0000000000000002082 89.0
DYD3_k127_1575915_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005052 302.0
DYD3_k127_1575915_1 kinase, sugar kinase superfamily K06982 - 2.7.1.169 0.000000000000004752 85.0
DYD3_k127_1647911_0 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000007211 243.0
DYD3_k127_1647911_1 Helix-hairpin-helix motif K07572 - - 0.000000000000000000000000000000000000000000000000002001 194.0
DYD3_k127_1647911_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000028,GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070475,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140102,GO:1901360,GO:1901363 2.1.1.182 0.000000000000000000000000000000000000002912 158.0
DYD3_k127_1647911_3 EVE domain - - - 0.000000000000000000000000000000009968 129.0
DYD3_k127_1647911_4 PFAM methyltransferase small K02493 - 2.1.1.297 0.00000000000000000000000000001321 125.0
DYD3_k127_1647911_5 - - - - 0.00000000000000000001532 98.0
DYD3_k127_1647911_6 Belongs to the eukaryotic ribosomal protein eL21 family K02889 - - 0.00000000000000000005986 92.0
DYD3_k127_1647911_7 RNA polymerase K03051 - 2.7.7.6 0.000000003732 62.0
DYD3_k127_1647911_8 DNA-binding transcription factor activity K03892 - - 0.0001022 51.0
DYD3_k127_1647911_9 SMART Parallel beta-helix repeat - - - 0.0009561 52.0
DYD3_k127_1688899_0 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008776,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016741,GO:0016742,GO:0016772,GO:0016774,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 441.0
DYD3_k127_1688899_1 PFAM Pyruvate phosphate dikinase, PEP pyruvate-binding K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000149 289.0
DYD3_k127_169454_0 transport, permease protein K01992,K18233 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 394.0
DYD3_k127_169454_1 ABC transporter K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 391.0
DYD3_k127_169454_10 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.0000000000000001332 91.0
DYD3_k127_169454_11 SNARE associated Golgi protein K19302 - 3.6.1.27 0.000000000000004006 90.0
DYD3_k127_169454_12 Domain of unknown function (DUF4870) K09940 - - 0.0000000000001297 78.0
DYD3_k127_169454_13 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000003083 69.0
DYD3_k127_169454_14 COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000002592 64.0
DYD3_k127_169454_15 SNARE associated Golgi protein K03975,K19302 - 3.6.1.27 0.00008855 55.0
DYD3_k127_169454_2 Thiolase, C-terminal domain K00626,K00632 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000007999 271.0
DYD3_k127_169454_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000469 233.0
DYD3_k127_169454_4 DNA-binding transcription factor activity K07728 - - 0.0000000000000000000000000000000000000000000000000000000000000000108 236.0
DYD3_k127_169454_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000002345 214.0
DYD3_k127_169454_6 PFAM CMP dCMP deaminase zinc-binding K01493 - 3.5.4.12 0.000000000000000000000000000000000000000000000169 190.0
DYD3_k127_169454_7 adenyl ribonucleotide binding - - - 0.000000000000000000000000000000000000000289 156.0
DYD3_k127_169454_8 HxlR-like helix-turn-helix - - - 0.00000000000000000005984 95.0
DYD3_k127_169454_9 Putative zinc- or iron-chelating domain - - - 0.00000000000000008959 91.0
DYD3_k127_1819091_0 TrkA-C domain K03455 - - 0.000000000000000000000000000000000007919 157.0
DYD3_k127_1819091_1 HxlR-like helix-turn-helix - - - 0.0000000000000000000000116 108.0
DYD3_k127_1819091_2 HTH DNA binding domain - - - 0.0000156 51.0
DYD3_k127_1826616_0 Isocitrate lyase K01637 - 4.1.3.1 1.649e-206 652.0
DYD3_k127_1826616_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001548 274.0
DYD3_k127_1826616_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000238 256.0
DYD3_k127_1826616_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000009353 253.0
DYD3_k127_1826616_4 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000001415 209.0
DYD3_k127_1826616_5 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000002667 182.0
DYD3_k127_1826616_6 Domain of unknown function (DUF2935) - - - 0.000000000000000000000005341 113.0
DYD3_k127_1826616_7 transcriptional regulators - - - 0.0004444 48.0
DYD3_k127_1844060_0 FMN-dependent dehydrogenase K01823 GO:0003674,GO:0003824,GO:0004452,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016853,GO:0016860,GO:0016863,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0071704,GO:1901576 5.3.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001215 281.0
DYD3_k127_1844060_1 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000002765 201.0
DYD3_k127_1844060_2 Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication K04802 - - 0.00000000000004776 72.0
DYD3_k127_1848866_0 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008036 419.0
DYD3_k127_1848866_1 Tryptophan 2,3-dioxygenase K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.00000000000000000000000000000000000000000000000006564 186.0
DYD3_k127_1848866_2 L-asparaginase II K01424 - 3.5.1.1 0.0000000000000000000000002146 121.0
DYD3_k127_1870534_0 COG1077 Actin-like ATPase involved in cell morphogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 411.0
DYD3_k127_1870534_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 383.0
DYD3_k127_1870534_2 Domain of unknown function (DUF1508) - - - 0.000000000000005734 86.0
DYD3_k127_1870534_3 DNA-binding transcriptional activator of the SARP family - - - 0.0004125 51.0
DYD3_k127_1875755_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000001161 146.0
DYD3_k127_1875755_1 - - - - 0.00001486 51.0
DYD3_k127_1926626_0 Threonine dehydratase K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000005073 268.0
DYD3_k127_1926626_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000356 162.0
DYD3_k127_1926626_2 Membrane protein of unknown function DUF63 - - - 0.000000000000000000008571 107.0
DYD3_k127_1926626_3 Protein of unknown function (DUF3309) - - - 0.000000000000001662 78.0
DYD3_k127_1926626_4 protein conserved in archaea - - - 0.00002308 56.0
DYD3_k127_1946851_0 Segregation and condensation complex subunit ScpB K06024 - - 0.00000000000000000000000000000003184 135.0
DYD3_k127_1946851_1 nucleic acid-binding protein contains PIN domain - - - 0.000000004215 63.0
DYD3_k127_1946851_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 0.0000004895 55.0
DYD3_k127_1947953_0 TIGRFAM 2-oxoacid acceptor oxidoreductase, alpha subunit K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 392.0
DYD3_k127_1947953_1 TIGRFAM pyruvate ferredoxin flavodoxin oxidoreductase, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 316.0
DYD3_k127_1947953_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 303.0
DYD3_k127_1947953_3 - - - - 0.0000000000000000000000000000000000000000000000000000000002027 219.0
DYD3_k127_2074467_0 Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency K06928 - 3.6.1.15 0.000000000000000000000000000000000000000000000000000006733 196.0
DYD3_k127_2074467_1 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0009451,GO:0009987,GO:0016070,GO:0016740,GO:0016741,GO:0032259,GO:0034641,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:1901360 2.1.1.166 0.000000000000000000000000000000000000000000000000000302 192.0
DYD3_k127_2074467_2 Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups K00555 - 2.1.1.215,2.1.1.216 0.000000000000000000000000000000000000000000002408 182.0
DYD3_k127_2108799_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261,K00262 - 1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 554.0
DYD3_k127_2108799_1 AsnC family K03718 - - 0.0000000000000000000000000000007981 124.0
DYD3_k127_2108799_2 Ferritin-like domain K04047 - - 0.0000000000000000000000007191 111.0
DYD3_k127_2113141_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005991 430.0
DYD3_k127_2113141_1 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.0000000000000000000000000000000000000000000000006907 183.0
DYD3_k127_2143060_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K22503 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 393.0
DYD3_k127_2143060_1 Acyl-CoA dehydrogenase, N-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 329.0
DYD3_k127_2143060_2 pfam abc1 K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 310.0
DYD3_k127_2143060_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000001495 232.0
DYD3_k127_2153567_0 PFAM Phenylalanine and histidine ammonia-lyase K01745,K10775 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009072,GO:0009698,GO:0009699,GO:0009800,GO:0009803,GO:0009987,GO:0016043,GO:0016053,GO:0016829,GO:0016840,GO:0016841,GO:0019438,GO:0019748,GO:0019752,GO:0022607,GO:0032787,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044550,GO:0045548,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 4.3.1.24,4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003219 501.0
DYD3_k127_2162007_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 446.0
DYD3_k127_2162007_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 373.0
DYD3_k127_2209785_0 OPT oligopeptide transporter protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 505.0
DYD3_k127_2209785_1 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 324.0
DYD3_k127_2209785_10 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000003896 101.0
DYD3_k127_2209785_11 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000004385 100.0
DYD3_k127_2209785_12 LVIVD repeat - - - 0.00000000000007096 85.0
DYD3_k127_2209785_13 NurA - - - 0.0000000001969 69.0
DYD3_k127_2209785_2 aminopeptidase K01262 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 330.0
DYD3_k127_2209785_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000003288 224.0
DYD3_k127_2209785_4 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000002595 226.0
DYD3_k127_2209785_5 ABC-2 family transporter protein K09694 - - 0.00000000000000000000000000000000000000000000000000000003647 206.0
DYD3_k127_2209785_6 Carbon-nitrogen hydrolase K18540 - 3.5.1.100 0.0000000000000000000000000000000000000000003725 177.0
DYD3_k127_2209785_7 Diphthamide synthase K06927 - 6.3.1.14 0.00000000000000000000000000000000000000006153 159.0
DYD3_k127_2209785_8 Major facilitator superfamily - - - 0.000000000000000000000000000004645 135.0
DYD3_k127_2209785_9 Fic/DOC family - - - 0.000000000000000000000000007008 124.0
DYD3_k127_2216159_0 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K07342 - - 0.000000000262 65.0
DYD3_k127_2226651_0 PFAM aspartate ornithine carbamoyltransferase carbamoyl-P binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001548 284.0
DYD3_k127_2226651_1 beta-lactamase domain protein - - - 0.0000000000000000000000000004423 122.0
DYD3_k127_2249687_0 ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA K06932 GO:0002097,GO:0002101,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016879,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 6.3.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000267 285.0
DYD3_k127_2249687_1 Methyltransferase domain - - - 0.0000000000000000000000000001298 124.0
DYD3_k127_2249687_2 Pyruvate phosphate dikinase - - - 0.00000000000111 76.0
DYD3_k127_2253024_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0002161,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 3.098e-213 691.0
DYD3_k127_2253024_1 DHHA1 domain K07463 - - 0.000000000002171 74.0
DYD3_k127_2253024_2 Galactose oxidase, central domain - - - 0.0005813 51.0
DYD3_k127_2339638_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 442.0
DYD3_k127_2339638_1 Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids K00869 GO:0003674,GO:0003824,GO:0004496,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0016125,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019287,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046490,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1901615 2.7.1.36 0.00000000000000000000000000005145 123.0
DYD3_k127_2339638_2 Promotes the exchange of GDP for GTP in EF-1-alpha GDP, thus allowing the regeneration of EF-1-alpha GTP that could then be used to form the ternary complex EF-1-alpha GTP AAtRNA K03232 - - 0.000000000002988 70.0
DYD3_k127_2365391_0 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006289 300.0
DYD3_k127_2365391_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00001037 59.0
DYD3_k127_239349_0 Pyruvate ferredoxin oxidoreductase and related K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 451.0
DYD3_k127_239349_1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000008532 248.0
DYD3_k127_239349_2 dioxygenase K00457,K16421 - 1.13.11.27,1.13.11.46 0.000000000000000000000000000000000000000000000000000000000000001212 229.0
DYD3_k127_2421517_0 Major facilitator Superfamily K08223 - - 0.0000000000000000000000000000000000000000000000000003565 199.0
DYD3_k127_2438464_0 Belongs to the peptidase S16 family K06870 - - 0.000000000000000000000000000000000000001825 169.0
DYD3_k127_2438464_1 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.0000000000000000000000000000002649 135.0
DYD3_k127_2438464_2 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.000000000000000000000005377 119.0
DYD3_k127_2438464_3 PFAM Thiamin pyrophosphokinase K00949 - 2.7.6.2 0.000000000000000000001027 103.0
DYD3_k127_2438464_4 Major Facilitator Superfamily - - - 0.00000000001821 76.0
DYD3_k127_2438464_5 LVIVD repeat - - - 0.0000001542 65.0
DYD3_k127_2438470_0 PFAM RNA-metabolising metallo-beta-lactamase K12574 - - 0.000000000000000000000000000000000000000000000002933 189.0
DYD3_k127_2444054_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000116 61.0
DYD3_k127_2444054_1 synthase - - - 0.00000005232 64.0
DYD3_k127_2444054_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179,K19668 GO:0005575,GO:0005576 3.2.1.4,3.2.1.91 0.0000004885 62.0
DYD3_k127_2448923_0 SMART Elongator protein 3 MiaB NifB K06936 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001961 268.0
DYD3_k127_2448923_1 Patch-forming domain C2 of tRNA-guanine transglycosylase K07557 GO:0002927,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.6.1.97 0.0000000000000000000000000000000000000000000000000000000000000000005675 248.0
DYD3_k127_2448923_2 NUDIX domain - - - 0.0000000000004052 74.0
DYD3_k127_2450357_0 Heat shock 70 kDa protein K04043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 508.0
DYD3_k127_2450357_1 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104,K03325,K03741,K03892,K18701 - 1.20.4.1,2.8.4.2,3.1.3.48 0.000000000000000000000000000001396 126.0
DYD3_k127_2450357_2 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.00000000000000000000001836 105.0
DYD3_k127_2463648_0 PFAM PilT protein domain protein K06865 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 539.0
DYD3_k127_2466229_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000003451 257.0
DYD3_k127_2466229_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000000000000006493 202.0
DYD3_k127_2466229_10 membrane - - - 0.0009013 48.0
DYD3_k127_2466229_2 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000001469 162.0
DYD3_k127_2466229_3 PA26 p53-induced protein (sestrin) - - - 0.000000000000000000000000000000000000001031 161.0
DYD3_k127_2466229_4 Protein of unknown function (DUF475) - - - 0.0000000000000000000000000000001679 133.0
DYD3_k127_2466229_5 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000002551 121.0
DYD3_k127_2466229_6 threonine efflux protein - - - 0.00000000000000000000000007537 115.0
DYD3_k127_2466229_7 PFAM Integral membrane protein TerC family - - - 0.0000000000000003318 89.0
DYD3_k127_2466229_8 Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin K17488 - 3.5.4.39 0.00000000021 63.0
DYD3_k127_2466229_9 Aldolase/RraA - - - 0.000001903 55.0
DYD3_k127_2491711_0 stage II sporulation protein E K07315 - 3.1.3.3 0.00000000000000000002022 97.0
DYD3_k127_2491711_1 COG0608 Single-stranded DNA-specific exonuclease K07463 - - 0.0000000000000000003553 98.0
DYD3_k127_2491711_2 Acyltransferase K00655 - 2.3.1.51 0.00000000002221 67.0
DYD3_k127_2506750_0 ABC transporter, transmembrane region K06147,K11085 - - 1.235e-228 725.0
DYD3_k127_2506750_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 361.0
DYD3_k127_2506750_2 COG3316 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000004048 205.0
DYD3_k127_2506750_3 ribosomal protein S15 K02956 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000005824 161.0
DYD3_k127_2506750_4 Transcription elongation factor Spt5 K02601 - - 0.00000000000000000000000000000000000002036 153.0
DYD3_k127_2506750_5 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000001062 116.0
DYD3_k127_2506750_6 Thiol-disulfide oxidoreductase DCC - - - 0.000000000000001506 82.0
DYD3_k127_2506750_7 protein conserved in archaea - - - 0.000000000000002092 89.0
DYD3_k127_2506750_8 archaeal coiled-coil protein - - - 0.000000000002358 78.0
DYD3_k127_2506750_9 - - - - 0.00000009415 61.0
DYD3_k127_2522844_0 Catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 418.0
DYD3_k127_2522844_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006421 400.0
DYD3_k127_2522844_2 COG1599 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins K07466 - - 0.000000000000000000000000000000000000000000000000000000000000000000009105 251.0
DYD3_k127_2522844_3 protein conserved in archaea K09746 - - 0.0000000000000000000000000000000000000000002722 171.0
DYD3_k127_2522844_4 Zinc finger domain K06874 - - 0.000000000000000000000000000000000004944 151.0
DYD3_k127_2539353_0 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 402.0
DYD3_k127_2539353_1 PFAM DNA polymerase beta domain protein region K07075 - - 0.0000000000000000000000000002444 116.0
DYD3_k127_2539353_2 Protein of unknown function DUF86 - - - 0.000000000000000000000000008377 113.0
DYD3_k127_2539353_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000007411 49.0
DYD3_k127_2549844_0 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 0.000000000000000000000000000000000000000000000000000000000000002933 243.0
DYD3_k127_2549844_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02119 - - 0.0000000000000000000000000000000000000000000000003227 189.0
DYD3_k127_2549844_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.0000000000000000000007789 98.0
DYD3_k127_2549844_3 PFAM H transporting two-sector ATPase C subunit K02124 - - 0.00000000000001761 87.0
DYD3_k127_2549844_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.0000000000009915 75.0
DYD3_k127_2570854_0 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000005833 190.0
DYD3_k127_2576227_0 TIGRFAM potassium uptake protein, TrkH family K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000049 238.0
DYD3_k127_2576227_1 PFAM TrkA-N domain K03499 - - 0.0000000000000000000000000000000000000000000000000000000000001914 229.0
DYD3_k127_2576227_2 Radical_SAM C-terminal domain K07739 - 2.3.1.48 0.00000000000000000000000000000000000000000001638 170.0
DYD3_k127_2581851_0 ig-like, plexins, transcription factors - - - 0.00000000000000000000000000000000000000005079 175.0
DYD3_k127_2581851_1 cell adhesion K03117,K12684,K19231 - - 0.0000001368 63.0
DYD3_k127_2657111_0 CBS domain containing protein K03699 - - 0.00000000000000000000000000000000000000001307 171.0
DYD3_k127_2719011_0 COG0471 Di- and tricarboxylate transporters - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002134 411.0
DYD3_k127_2719011_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 323.0
DYD3_k127_2719011_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009606 282.0
DYD3_k127_2719011_3 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002918 261.0
DYD3_k127_2719011_4 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000002595 184.0
DYD3_k127_2719011_5 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000008373 171.0
DYD3_k127_2719011_6 ABC-2 type transporter K01992 - - 0.000000000000000001678 97.0
DYD3_k127_2719011_7 COG3425 3-hydroxy-3-methylglutaryl CoA synthase K01641,K07068 - 2.3.3.10 0.000003599 53.0
DYD3_k127_2719011_8 ig-like, plexins, transcription factors - - - 0.0001194 56.0
DYD3_k127_2719293_0 ThiF family K21029,K21147 - 2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 447.0
DYD3_k127_2719293_1 Pyridoxal-phosphate dependent enzyme K12339,K21148 - 2.5.1.113,2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 324.0
DYD3_k127_2719293_10 von Willebrand factor, type A - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000007699 69.0
DYD3_k127_2719293_11 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03404 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0010007,GO:0031976,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:1902494 6.6.1.1 0.00000009533 64.0
DYD3_k127_2719293_12 PIN domain - - - 0.0000186 52.0
DYD3_k127_2719293_13 SpoVT / AbrB like domain - - - 0.0006973 45.0
DYD3_k127_2719293_2 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids K17104 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 2.5.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000235 263.0
DYD3_k127_2719293_3 COG3407 Mevalonate pyrophosphate decarboxylase K17942 - 4.1.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000004937 252.0
DYD3_k127_2719293_4 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000005403 132.0
DYD3_k127_2719293_5 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000004303 92.0
DYD3_k127_2719293_6 Domain of unknown function (DUF4395) - - - 0.0000000000005641 76.0
DYD3_k127_2719293_7 - K00176,K07138 - 1.2.7.3 0.00000000003225 67.0
DYD3_k127_2719293_8 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.0000000002403 67.0
DYD3_k127_2719293_9 Prokaryotic homologs of the JAB domain - - - 0.0000000006143 66.0
DYD3_k127_2728614_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit K02118 - - 5.078e-229 716.0
DYD3_k127_2733398_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 457.0
DYD3_k127_2733398_1 Proton-conducting membrane transporter K22168 - 1.5.98.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 374.0
DYD3_k127_2733398_2 Proton-conducting membrane transporter K22169 - 1.5.98.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 358.0
DYD3_k127_2733398_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000003256 192.0
DYD3_k127_2733398_4 NADH ubiquinone oxidoreductase subunit 11 or 4L (Chain K) K00340 - 1.6.5.3 0.0000000000000000000000005274 112.0
DYD3_k127_2733398_5 PFAM PKD domain containing protein - - - 0.00000000000000001072 98.0
DYD3_k127_2733398_6 phosphorelay signal transduction system K07714 - - 0.00000000000001447 85.0
DYD3_k127_2733398_7 Belongs to the complex I subunit 6 family K00339,K05578 - 1.6.5.3 0.0001335 49.0
DYD3_k127_2742546_0 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant K07025 - - 0.000000000000000000000001283 115.0
DYD3_k127_2742546_1 Golgi phosphoprotein 3 (GPP34) - - - 0.0000004737 62.0
DYD3_k127_2743479_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.889e-238 764.0
DYD3_k127_2743479_1 Reverse transcriptase-like K03469 - 3.1.26.4 0.0000000000000000000000000000148 123.0
DYD3_k127_2743479_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000003162 74.0
DYD3_k127_2756795_0 Putative FMN-binding domain K07734 - - 0.00000000000000000000000000000000000000000000000000000000000478 214.0
DYD3_k127_2756795_2 Belongs to the eukaryotic ribosomal protein eS31 family K02977 - - 0.00000000000006329 73.0
DYD3_k127_2756795_3 Belongs to the eukaryotic ribosomal protein eS24 family K02974 - - 0.000000000002118 71.0
DYD3_k127_2756795_4 Papain family cysteine protease - - - 0.0008364 52.0
DYD3_k127_2791466_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 490.0
DYD3_k127_2791466_1 EamA-like transporter family - - - 0.00000000000000000000004374 102.0
DYD3_k127_2791466_2 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.000000000608 61.0
DYD3_k127_280173_0 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000003358 197.0
DYD3_k127_280173_1 Belongs to the malate synthase family K01638 - 2.3.3.9 0.000000000000000000000000000000131 127.0
DYD3_k127_280173_2 metallopeptidase activity - - - 0.0000000000000000000000003083 115.0
DYD3_k127_2860544_0 Belongs to the arginase family K01479,K01480 - 3.5.3.11,3.5.3.8 0.000000000000000000000000000000000000000000000000342 188.0
DYD3_k127_2860544_1 KR domain - - - 0.0000000000000000000000000000000000000000000009334 181.0
DYD3_k127_2860544_2 Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate K06989 - 1.4.1.21 0.00000000000001747 74.0
DYD3_k127_2860544_3 Major facilitator Superfamily - - - 0.0000000004263 67.0
DYD3_k127_2910620_0 PFAM aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 405.0
DYD3_k127_2910620_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 390.0
DYD3_k127_2910620_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009752 279.0
DYD3_k127_2910620_3 uroporphyrinogen-III synthase activity K01719,K01749,K02496,K13542,K13543 GO:0003674,GO:0003824,GO:0004852,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.107,2.5.1.61,4.2.1.75 0.0000000000001963 76.0
DYD3_k127_3019168_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000004285 276.0
DYD3_k127_3019168_1 Contacts the emerging nascent chain on the ribosome K03626 - - 0.00000000000000001048 93.0
DYD3_k127_3019168_2 - - - - 0.000000000000001189 81.0
DYD3_k127_3019168_3 archaeal coiled-coil protein - - - 0.000003845 55.0
DYD3_k127_3019168_4 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.00000401 56.0
DYD3_k127_303357_0 PFAM tRNA synthetase, class II (G, H, P and S) K01880 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 442.0
DYD3_k127_303357_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008212 413.0
DYD3_k127_303357_10 Two component, sigma54 specific, transcriptional regulator, Fis family K07715 - - 0.0000000000000006375 86.0
DYD3_k127_303357_11 exosome subunit K07581 - - 0.00000000000000162 82.0
DYD3_k127_303357_12 membrane - - - 0.000000000001195 77.0
DYD3_k127_303357_13 - - - - 0.000000000001345 75.0
DYD3_k127_303357_2 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000002007 250.0
DYD3_k127_303357_3 ABC-type multidrug transport system, ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000003152 238.0
DYD3_k127_303357_4 Involved in regulation of DNA replication K10725 - - 0.0000000000000000000000000000000000000000000000000000000000000005478 234.0
DYD3_k127_303357_5 COG1668 ABC-type Na efflux pump, permease component - - - 0.00000000000000000000000000000000000000000000000000006137 207.0
DYD3_k127_303357_6 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000001193 194.0
DYD3_k127_303357_7 PFAM amidohydrolase - - - 0.00000000000000000000000000000000000000000000005572 184.0
DYD3_k127_303357_8 COG1668 ABC-type Na efflux pump, permease component - - - 0.00000000000000000000000000000000000000001621 173.0
DYD3_k127_303357_9 - - - - 0.000000000000000000000000003475 116.0
DYD3_k127_3041607_0 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 325.0
DYD3_k127_3041607_1 SNF2 family N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001244 265.0
DYD3_k127_3041607_2 HNH nucleases - - - 0.00000000000000000000000000000000000000000000002527 179.0
DYD3_k127_3043405_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 375.0
DYD3_k127_3043405_1 tRNA intron endonuclease, catalytic C-terminal domain K01170 GO:0000213,GO:0000379,GO:0000394,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:0140101,GO:1901360 4.6.1.16 0.00000000000000000000000000000005674 142.0
DYD3_k127_3043405_2 FMN binding - - - 0.000000000000000000000000008575 115.0
DYD3_k127_3043405_3 Integral membrane protein DUF92 - - - 0.000000000000000000000003484 111.0
DYD3_k127_3043405_4 phosphohydrolase (DHH superfamily) K07097 - - 0.000000000000000000000008295 113.0
DYD3_k127_3043405_5 - - - - 0.0001778 53.0
DYD3_k127_3044623_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1011.0
DYD3_k127_3044623_1 Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA K04800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 335.0
DYD3_k127_3044623_2 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000004738 91.0
DYD3_k127_3111414_0 Diguanylate cyclase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002419 304.0
DYD3_k127_3111414_1 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000001622 191.0
DYD3_k127_3111414_2 Bacterio-opsin activator HTH K06930,K06988 - 1.5.1.40 0.0000747 47.0
DYD3_k127_3128356_0 tRNA synthetases class I (W and Y) K01867 GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 370.0
DYD3_k127_3128356_1 Bulb-type mannose-specific lectin - - - 0.0000000000000000003019 97.0
DYD3_k127_3128356_2 PFAM nuclease (SNase domain protein) K01174 - 3.1.31.1 0.0000001787 63.0
DYD3_k127_3166479_0 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.0000000000000000000000000000000000000008077 164.0
DYD3_k127_3166479_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000001106 142.0
DYD3_k127_3166479_2 LVIVD repeat - - - 0.0000000006282 72.0
DYD3_k127_3166479_3 protein conserved in archaea - - - 0.00000002244 64.0
DYD3_k127_3166479_4 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.000007015 53.0
DYD3_k127_3224914_0 tRNA-splicing ligase that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs K14415 GO:0000166,GO:0000394,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016886,GO:0017076,GO:0019001,GO:0019002,GO:0030145,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006051 492.0
DYD3_k127_3224914_1 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA K04799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 307.0
DYD3_k127_3224914_2 Peptidase family M28 - - - 0.00000000000000000000000000000001828 139.0
DYD3_k127_3327987_0 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 392.0
DYD3_k127_3327987_1 Fungalysin metallopeptidase (M36) - - - 0.00000000000000000002571 106.0
DYD3_k127_3327987_2 - - - - 0.00000000000002649 81.0
DYD3_k127_3327987_3 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.00000009795 59.0
DYD3_k127_3327987_4 4Fe-4S binding domain - - - 0.00001435 52.0
DYD3_k127_3328635_0 DEAD DEAH box helicase domain protein K10896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 543.0
DYD3_k127_3328635_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000164 280.0
DYD3_k127_3328635_3 Uncharacterised protein family (UPF0147) K09721 - - 0.00000000000000000000002744 102.0
DYD3_k127_3332410_0 PFAM Glucose Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 314.0
DYD3_k127_3332410_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006355 256.0
DYD3_k127_3332410_2 Cytochrome C oxidase subunit II, transmembrane domain - - - 0.0000000000000000008922 100.0
DYD3_k127_3332410_3 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.000000000000000009656 95.0
DYD3_k127_3332410_4 Histidine Phosphotransfer domain - - - 0.00001179 52.0
DYD3_k127_3361964_0 vacuolar iron transporter - GO:0000041,GO:0003674,GO:0005215,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006828,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0015075,GO:0015318,GO:0016020,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030026,GO:0031090,GO:0034220,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0051716,GO:0055065,GO:0055071,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071421,GO:0097577,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805 - 0.0000000000000000000000005622 119.0
DYD3_k127_3361964_1 OST-HTH/LOTUS domain - - - 0.000000000000001026 85.0
DYD3_k127_3376009_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family - GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000004884 232.0
DYD3_k127_3376009_1 ZIP Zinc transporter K07238,K16267 - - 0.0000000000000000000000000000000000000000006245 168.0
DYD3_k127_3376009_2 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000001266 98.0
DYD3_k127_3376009_3 Copper resistance protein CopC K14166 - - 0.000000000000000001851 100.0
DYD3_k127_3376009_4 Protein involved in ribosomal biogenesis, contains PUA domain K07565 - - 0.00000000000000229 83.0
DYD3_k127_3376009_5 PFAM Archease protein family (DUF101 UPF0211) - - - 0.0000000006096 66.0
DYD3_k127_3376009_6 NUDIX domain K03574 - 3.6.1.55 0.0000000006978 70.0
DYD3_k127_3376009_7 Regulatory protein ArsR - - - 0.000000003272 62.0
DYD3_k127_3376009_8 OsmC-like protein - - - 0.0009785 50.0
DYD3_k127_3421030_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 297.0
DYD3_k127_3421030_1 argininosuccinate lyase K01755 - 4.3.2.1 0.000000000000000000000000000000000000000000000000000000003634 216.0
DYD3_k127_3421030_2 His Kinase A (phosphoacceptor) domain - - - 0.000000008745 57.0
DYD3_k127_347185_0 Multi-copper - - - 0.0000000000000000000000000000000000000000000000000000000000005601 231.0
DYD3_k127_347185_1 Transcriptional regulator, ArsR family - - - 0.00000000000000001423 91.0
DYD3_k127_349822_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007612 633.0
DYD3_k127_349822_1 PFAM Archaeal protein of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 297.0
DYD3_k127_349822_2 chromosome segregation and condensation protein ScpA K05896 - - 0.000000000000000000000000001643 126.0
DYD3_k127_349822_3 COG0665 Glycine D-amino acid oxidases (deaminating) K00303 - 1.5.3.1 0.000000000000000000000000002865 128.0
DYD3_k127_3501364_0 ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C- terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome association which triggers gate opening, and supports translocation of unfolded substrates K03420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 423.0
DYD3_k127_3501364_1 Protein kinase domain K08851,K15904 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234,2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 348.0
DYD3_k127_3501364_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000001675 166.0
DYD3_k127_3501364_3 TP53 regulating kinase K08851 GO:0000408,GO:0001558,GO:0002039,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023051,GO:0023056,GO:0030307,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032991,GO:0034641,GO:0036211,GO:0040008,GO:0040014,GO:0040018,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045927,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048638,GO:0048639,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051239,GO:0051240,GO:0065007,GO:0070013,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901796,GO:1902531,GO:1902533 2.7.11.1 0.000000000000000000000000000000000000000007313 164.0
DYD3_k127_3501364_4 Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) K01265 - 3.4.11.18 0.000000000000000008964 86.0
DYD3_k127_3501364_5 PFAM helix-turn-helix domain protein K03627 - - 0.00000000000000008574 95.0
DYD3_k127_3501364_6 Domain of unknown function (DUF4332) - - - 0.000000000004431 78.0
DYD3_k127_3512720_0 acetylornithine aminotransferase K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0008150,GO:0019842,GO:0030170,GO:0036094,GO:0040007,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000006862 171.0
DYD3_k127_3512720_1 membrane K08971 - - 0.0000000000000000000000000002211 128.0
DYD3_k127_3512720_2 Aldo/keto reductase family - - - 0.0000000000000000000000000007269 129.0
DYD3_k127_3600002_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 417.0
DYD3_k127_3600002_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000002493 231.0
DYD3_k127_3600002_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000001372 168.0
DYD3_k127_3600002_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.00000000000000000000000000000000000004677 147.0
DYD3_k127_3600002_4 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000006754 141.0
DYD3_k127_3608331_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000000001536 217.0
DYD3_k127_3641688_0 ABC-type transport system involved in Fe-S cluster assembly, permease component K09014 - - 4.519e-237 737.0
DYD3_k127_3641688_1 ABC transporter K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.000000000000000000000000000000000001369 142.0
DYD3_k127_3653252_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006009 601.0
DYD3_k127_3653252_1 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 442.0
DYD3_k127_3653252_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 413.0
DYD3_k127_3653252_3 Voltage gated chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009737 325.0
DYD3_k127_3653252_4 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000009579 96.0
DYD3_k127_3653252_5 Urate oxidase N-terminal - - - 0.00000000000000001591 89.0
DYD3_k127_3653252_6 Protein of unknown function (DUF962) - - - 0.0000000000001066 79.0
DYD3_k127_3653252_7 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.00000000001182 76.0
DYD3_k127_3653252_8 - - - - 0.00000005275 62.0
DYD3_k127_3653252_9 LVIVD repeat - - - 0.0004837 53.0
DYD3_k127_3656739_0 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000002353 209.0
DYD3_k127_3656739_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000006425 178.0
DYD3_k127_3656739_2 UbiA prenyltransferase family K02548 - 2.5.1.74 0.00000000000000000000000000000000000006323 158.0
DYD3_k127_3656739_3 Belongs to the UPF0179 family K09730 - - 0.0000000005747 64.0
DYD3_k127_3656739_4 Histidine kinase - - - 0.000000001148 70.0
DYD3_k127_3667854_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1172.0
DYD3_k127_3667854_1 Histidine kinase-like ATPases - - - 0.00002251 52.0
DYD3_k127_3667854_2 - - - - 0.00006905 55.0
DYD3_k127_3741624_0 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006136 325.0
DYD3_k127_3741624_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K02858 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.12 0.000000000000000000000000000000000000000000000000000000000001575 220.0
DYD3_k127_3741624_2 Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme K14656 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0003919,GO:0005488,GO:0005515,GO:0005524,GO:0006139,GO:0006725,GO:0006732,GO:0006747,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009161,GO:0009165,GO:0009259,GO:0009987,GO:0010181,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032553,GO:0032555,GO:0032557,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042726,GO:0042727,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046443,GO:0046444,GO:0046483,GO:0046983,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072387,GO:0072388,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.7.2 0.0000000000000000000000000000000000000000000000007068 179.0
DYD3_k127_3741624_3 6,7-dimethyl-8-ribityllumazine synthase K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000002607 177.0
DYD3_k127_3741624_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000008553 125.0
DYD3_k127_3741624_5 Belongs to the eukaryotic ribosomal protein eS17 family K02962 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000309 81.0
DYD3_k127_3745410_0 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 2.95e-232 737.0
DYD3_k127_3745410_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 368.0
DYD3_k127_3745410_2 PAS fold - - - 0.00000000000000000000000000000000000000000003671 181.0
DYD3_k127_3745410_3 Belongs to the Fur family K09825 GO:0003674,GO:0003700,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000374,GO:2001141 - 0.0000000000000000000000000000000002191 140.0
DYD3_k127_3745410_4 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.0000000000000000000000000009213 131.0
DYD3_k127_3745410_5 Belongs to the archaeal rpoM eukaryotic RPA12 RPB9 RPC11 RNA polymerase family K03057 GO:0000428,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006355,GO:0008150,GO:0008270,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0030880,GO:0031323,GO:0031326,GO:0032991,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061695,GO:0065007,GO:0080090,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141 - 0.00000000000000000000002284 102.0
DYD3_k127_3751630_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 513.0
DYD3_k127_3751630_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000009331 270.0
DYD3_k127_3751630_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000006098 202.0
DYD3_k127_3751630_3 Amino acid kinase family K00926 - 2.7.2.2 0.000000000000000000000000000000000000000000000000000001763 204.0
DYD3_k127_3751630_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000009642 124.0
DYD3_k127_3751630_5 NAD+ binding - - - 0.0000000000000000001964 105.0
DYD3_k127_3751630_6 Inositol monophosphatase family - - - 0.000000000000005812 85.0
DYD3_k127_3751630_7 PFAM Bifunctional DNA primase polymerase - - - 0.0000000000006405 74.0
DYD3_k127_3751630_8 PFAM plasmid stabilization system K06218 - - 0.0000000001107 67.0
DYD3_k127_379001_0 KH, type 1, domain K07041 - - 9.175e-229 726.0
DYD3_k127_379001_1 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03433 GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004298,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0019538,GO:0019774,GO:0030163,GO:0032991,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0070003,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.0000000000000000000000000000000000000000000000000000000000003254 220.0
DYD3_k127_379001_2 kinase, sugar kinase superfamily K06982 - 2.7.1.169 0.0000004418 59.0
DYD3_k127_3852663_0 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 484.0
DYD3_k127_3852663_1 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000131 198.0
DYD3_k127_3924215_0 DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity K05592 GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009266,GO:0009295,GO:0009409,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 360.0
DYD3_k127_3924215_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 290.0
DYD3_k127_3924215_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000004393 151.0
DYD3_k127_3924215_3 Protein of unknown function (DUF531) K09725 - - 0.00000000000000000000000005035 124.0
DYD3_k127_3925109_0 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.00000000000000000000000000000000002539 141.0
DYD3_k127_3925109_1 OsmC-like protein - - - 0.0009318 47.0
DYD3_k127_394404_0 COG1012 NAD-dependent aldehyde dehydrogenases K00128 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 474.0
DYD3_k127_394404_1 NAD(P)H-binding - - - 0.00000000000000000000000000000000000000000000000000005209 200.0
DYD3_k127_394404_2 EamA-like transporter family - - - 0.000000000001049 78.0
DYD3_k127_394404_3 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.00002196 47.0
DYD3_k127_394404_4 response to nickel cation K07722 - - 0.0001185 49.0
DYD3_k127_3947464_0 Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'- monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1- beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates K06863 - 6.3.4.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 437.0
DYD3_k127_3947464_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000001271 245.0
DYD3_k127_3947464_10 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000001091 120.0
DYD3_k127_3947464_11 PFAM Rhomboid family protein - - - 0.000000000000000000002749 109.0
DYD3_k127_3947464_12 Sigma-54 interaction domain K19641 - - 0.0000000000000001263 86.0
DYD3_k127_3947464_13 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.000000000000001121 84.0
DYD3_k127_3947464_14 NurA - - - 0.0000000003296 72.0
DYD3_k127_3947464_15 Peptidase family M28 - - - 0.000000001001 70.0
DYD3_k127_3947464_16 TIGRFAM TraB family protein - - - 0.000000002216 70.0
DYD3_k127_3947464_17 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region K21573 - - 0.0003558 53.0
DYD3_k127_3947464_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.000000000000000000000000000000000000000000000000000000000000001507 226.0
DYD3_k127_3947464_3 DnaB-like helicase C terminal domain K08482 - - 0.000000000000000000000000000000000000000000000000018 194.0
DYD3_k127_3947464_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000001881 154.0
DYD3_k127_3947464_5 RibD C-terminal domain K14654 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009451,GO:0009987,GO:0016070,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0034641,GO:0036094,GO:0042364,GO:0042726,GO:0042727,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.1.1.302 0.00000000000000000000000000000000000004669 152.0
DYD3_k127_3947464_6 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes - - - 0.0000000000000000000000000000000000001524 160.0
DYD3_k127_3947464_7 Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA K14568 GO:0000154,GO:0000462,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019843,GO:0022613,GO:0030490,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070037,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140102,GO:1901360,GO:1901363 2.1.1.260 0.0000000000000000000000000000000000005997 148.0
DYD3_k127_3947464_8 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000229 138.0
DYD3_k127_3947464_9 - - - - 0.0000000000000000000000000002235 127.0
DYD3_k127_3948313_0 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 512.0
DYD3_k127_3948313_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 390.0
DYD3_k127_3948313_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 313.0
DYD3_k127_3948313_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009539 286.0
DYD3_k127_3948313_4 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000005006 186.0
DYD3_k127_3948313_5 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000001128 168.0
DYD3_k127_3948313_6 binds to the 23S rRNA K02929 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000009448 146.0
DYD3_k127_3948313_7 ribosomal protein K02978 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000004737 76.0
DYD3_k127_3992_0 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 3.271e-264 841.0
DYD3_k127_3992_1 Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 372.0
DYD3_k127_3992_2 Peptidase family S51 - - - 0.0000000000000000000000000000000000000000000000000000000000000002075 231.0
DYD3_k127_3992_3 Asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000003506 226.0
DYD3_k127_3992_4 Mannose-6-phosphate isomerase K01809 - 5.3.1.8 0.0000000000000000000004974 100.0
DYD3_k127_3992_5 lysyltransferase activity K07027 - - 0.00000000000000000005924 104.0
DYD3_k127_3992_6 Uncharacterized conserved protein (DUF2203) - - - 0.000000004847 57.0
DYD3_k127_3998496_0 PFAM phospholipid glycerol acyltransferase - - - 0.00000000000000000000000000000000000000006877 162.0
DYD3_k127_3998496_1 with the alpha beta hydrolase fold - - - 0.0000000000000000000000002592 118.0
DYD3_k127_3998496_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000001774 59.0
DYD3_k127_4000149_0 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000006811 170.0
DYD3_k127_4000149_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000005184 169.0
DYD3_k127_4000149_2 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.00000000000000000000000001311 112.0
DYD3_k127_4013333_0 PFAM metal-dependent phosphohydrolase, HD sub domain K06885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004044 291.0
DYD3_k127_4013333_1 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000111 229.0
DYD3_k127_4013333_2 Phosphatidylserine decarboxylase K01613 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 4.1.1.65 0.00000000000000000000000000000000000000005096 159.0
DYD3_k127_4013333_3 PFAM Haloacid dehalogenase domain protein hydrolase K07025,K20862 - 3.1.3.102,3.1.3.104 0.000000000000000000001934 104.0
DYD3_k127_4013333_4 Beta-lactamase superfamily domain - - - 0.0000000000000005346 81.0
DYD3_k127_4013333_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000002649 89.0
DYD3_k127_4013333_6 PFAM Transmembrane exosortase (Exosortase_EpsH) - - - 0.000000000003924 78.0
DYD3_k127_4013333_7 - - - - 0.000003405 61.0
DYD3_k127_4013333_8 - - - - 0.0004015 52.0
DYD3_k127_4014842_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001616 265.0
DYD3_k127_4014842_1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.00000000000000000000000000002076 126.0
DYD3_k127_4014842_2 Copper binding proteins, plastocyanin/azurin family - - - 0.0001958 47.0
DYD3_k127_4017302_0 PFAM type II secretion system protein E K07332 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 525.0
DYD3_k127_4017302_1 Type II secretion system K07333 - - 0.000000000000000000000000000000000000000001377 176.0
DYD3_k127_4017302_2 Type II secretion system K07333 - - 0.000000000000000000000000000000002671 148.0
DYD3_k127_4017302_3 KaiC - - - 0.0000000000000000001428 97.0
DYD3_k127_4017302_4 COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases K07991 - 3.4.23.52 0.00000000000003738 85.0
DYD3_k127_4017302_5 FAD linked oxidases, C-terminal domain - - - 0.0001423 53.0
DYD3_k127_4027919_0 ATPase involved in replication control, Cdc46 Mcm family K10726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 627.0
DYD3_k127_4027919_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 363.0
DYD3_k127_4027919_2 Protein of unknown function (DUF424) K09148 - - 0.000000000000000001403 89.0
DYD3_k127_4027919_3 LVIVD repeat - - - 0.0009663 51.0
DYD3_k127_4080864_0 eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA K03242 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004277 514.0
DYD3_k127_4080864_1 Domain of unknown function DUF87 K06915,K19172 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 443.0
DYD3_k127_4080864_2 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000000000000000000000000000000005167 206.0
DYD3_k127_4080864_3 Fumarylacetoacetate (FAA) hydrolase family K16165 - 3.7.1.20 0.0000000000000000000000000000000000000000000000000000001389 201.0
DYD3_k127_4080864_4 permease - - - 0.0000000000000000000000000000000000000000000007553 181.0
DYD3_k127_4080864_5 Belongs to the eukaryotic ribosomal protein eS6 family K02991 - - 0.00000000000000000000000000000000009524 138.0
DYD3_k127_4080864_6 Winged helix-turn-helix DNA-binding - - - 0.0000000001532 75.0
DYD3_k127_4080864_7 Large family of predicted nucleotide-binding domains K07158 - - 0.0000000006149 70.0
DYD3_k127_4083495_0 Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 310.0
DYD3_k127_4083495_1 General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation K03120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002825 251.0
DYD3_k127_4083495_10 - - - - 0.00001306 56.0
DYD3_k127_4083495_11 Protein of unknown function (DUF2797) - - - 0.00004913 55.0
DYD3_k127_4083495_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008319 248.0
DYD3_k127_4083495_3 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate K07558 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000001731 227.0
DYD3_k127_4083495_4 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000001456 198.0
DYD3_k127_4083495_5 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000003202 168.0
DYD3_k127_4083495_6 Histidine biosynthesis bifunctional protein HisIE K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.6.1.31 0.000000000000000000000000000002984 135.0
DYD3_k127_4083495_7 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs K07573 - - 0.000000000000000000002655 101.0
DYD3_k127_4083495_8 PAP2 superfamily - - - 0.00000000000000000001478 103.0
DYD3_k127_4083495_9 imidazoleglycerol-phosphate dehydratase K01089,K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 0.000000000000005804 87.0
DYD3_k127_40917_0 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000001178 231.0
DYD3_k127_40917_1 Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase K07559 - - 0.00000000000000000000000000000000000000000000000000000000001432 217.0
DYD3_k127_40917_11 protein conserved in archaea - - - 0.0000000001447 73.0
DYD3_k127_40917_2 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000005087 183.0
DYD3_k127_40917_3 electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000602 180.0
DYD3_k127_40917_4 response regulator, receiver - - - 0.00000000000000000000000000000000000000000006691 165.0
DYD3_k127_40917_5 Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.00000000000000000000000000000000000000179 163.0
DYD3_k127_40917_6 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.000000000000000000000000000000000001012 146.0
DYD3_k127_40917_7 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000008754 125.0
DYD3_k127_40917_8 FeoA K03709 - - 0.000000000000000000000009752 108.0
DYD3_k127_40917_9 - - - - 0.0000000000000000008096 100.0
DYD3_k127_4104222_0 PFAM Chalcone and stilbene synthases, N-terminal domain K16167 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000028 274.0
DYD3_k127_4104222_1 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000009878 156.0
DYD3_k127_4104222_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000002512 136.0
DYD3_k127_4104222_3 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.0000000000000000000000000000006389 128.0
DYD3_k127_4113976_0 Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 K03243 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 566.0
DYD3_k127_4113976_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000009209 179.0
DYD3_k127_4113976_2 Flavodoxin-like fold - - - 0.000000000000000000000000000001739 134.0
DYD3_k127_4113976_3 Transcriptional regulator - - - 0.00002182 49.0
DYD3_k127_4149761_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 594.0
DYD3_k127_4149761_1 Carbamoyl-phosphate synthetase large chain domain protein K01959 - 6.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 493.0
DYD3_k127_4149761_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 427.0
DYD3_k127_4149761_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - - 0.000000000000000000000000000000000000000000000000000000000000000002332 252.0
DYD3_k127_4149761_4 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000005713 120.0
DYD3_k127_4149761_5 BioY family K02014,K03523 - - 0.000000000000000259 89.0
DYD3_k127_4149761_6 PFAM biotin lipoyl attachment domain-containing protein K01615,K02160 - 4.1.1.70 0.0000000000000006512 84.0
DYD3_k127_4149761_7 Protein of unknown function DUF86 K07075 - - 0.00000004037 61.0
DYD3_k127_4149761_8 PFAM DNA polymerase, beta domain protein region K07075 - - 0.00003049 54.0
DYD3_k127_419978_0 Belongs to the arginase family K01476 GO:0003674,GO:0003824,GO:0004053,GO:0006082,GO:0006520,GO:0006525,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009781 346.0
DYD3_k127_419978_1 NAD(P)H-binding K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 337.0
DYD3_k127_419978_10 Aminotransferase class I and II K00812 - 2.6.1.1 0.000000002441 58.0
DYD3_k127_419978_2 Carboxypeptidase regulatory-like domain K07151 - 2.4.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 340.0
DYD3_k127_419978_3 Catalyzes the conversion of dihydroorotate to orotate K00254,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000478 287.0
DYD3_k127_419978_4 SMART Peptidase A22, presenilin signal peptide - - - 0.00000000000000000000000000000000000000000000000000000000000000000009567 242.0
DYD3_k127_419978_5 PFAM Pre-mRNA processing ribonucleoprotein, binding K14564 - - 0.000000000000000000000000000000000000000000000000004433 197.0
DYD3_k127_419978_6 Multicopper oxidase K22348 - 1.16.3.3 0.0000000000000000000000000000000000000000000004715 185.0
DYD3_k127_419978_7 Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA K04795 - - 0.000000000000000000000000000000000000000000001789 183.0
DYD3_k127_419978_8 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.0000000000004556 71.0
DYD3_k127_419978_9 PRC-barrel - - - 0.0000000001987 65.0
DYD3_k127_4239978_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007103 613.0
DYD3_k127_4255488_0 DEAD DEAH box helicase domain protein K03724 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 617.0
DYD3_k127_4255488_1 S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF- 2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis K20215 GO:0003674,GO:0003824,GO:0004164,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016741,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765 2.1.1.98 0.000000000000000000000000000000000000000000000000000000000000000000006672 242.0
DYD3_k127_4255488_2 Met-10+ like-protein K15429 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000001388 214.0
DYD3_k127_4255488_3 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.000000000000000000000000000000000000000002238 178.0
DYD3_k127_4255488_4 Uncharacterised protein family UPF0058 - - - 0.00000000000000001624 87.0
DYD3_k127_4255488_5 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.00000000002629 70.0
DYD3_k127_4255488_6 protein conserved in archaea - - - 0.00000158 58.0
DYD3_k127_4255488_7 transcriptional regulators - - - 0.0001335 55.0
DYD3_k127_4255488_8 CheY-like receiver AAA-type ATPase and DNA-binding domains K10126 - - 0.0002626 45.0
DYD3_k127_4266725_0 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000001043 192.0
DYD3_k127_4266725_1 FR47-like protein - - - 0.000000003839 64.0
DYD3_k127_4266725_2 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.0004003 48.0
DYD3_k127_4266725_3 RimK-like ATPgrasp N-terminal domain - - - 0.0006192 51.0
DYD3_k127_4289088_0 Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA K03265 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 391.0
DYD3_k127_4289088_1 Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009801 385.0
DYD3_k127_4289088_10 Ribosomal L29 protein K02904 - - 0.00000000000000262 78.0
DYD3_k127_4289088_11 Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000005584 83.0
DYD3_k127_4289088_12 Transglutaminase/protease-like homologues K22452 - 2.3.2.13 0.0004279 53.0
DYD3_k127_4289088_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006469 377.0
DYD3_k127_4289088_3 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001057 257.0
DYD3_k127_4289088_4 conserved protein related to pyruvate formate-lyase activating enzyme K07129 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003886 261.0
DYD3_k127_4289088_5 ribosomal protein S3 K02982 GO:0000702,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003735,GO:0003824,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006281,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008534,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000007213 241.0
DYD3_k127_4289088_6 Forms part of the polypeptide exit tunnel K02930 - - 0.0000000000000000000000000000000000000000000000000000000001492 218.0
DYD3_k127_4289088_7 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000009626 143.0
DYD3_k127_4289088_8 Translation initiation factor SUI1 K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000472 135.0
DYD3_k127_4289088_9 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000366 131.0
DYD3_k127_4311849_0 Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate K06989 - 1.4.1.21 0.0000000000000000000000000000000000000000000000000001163 197.0
DYD3_k127_4311849_1 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000001034 182.0
DYD3_k127_4312653_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K09482 - 6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004057 401.0
DYD3_k127_4312653_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000004926 196.0
DYD3_k127_4312653_10 protein conserved in archaea - - - 0.0002986 51.0
DYD3_k127_4312653_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K03330 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.7 0.0000000000000000000000000000000000000474 151.0
DYD3_k127_4312653_3 esterase of the alpha-beta hydrolase superfamily - - - 0.00000000000000000000000000001132 129.0
DYD3_k127_4312653_4 Transcriptional regulator, TrmB - - - 0.0000000000000001172 93.0
DYD3_k127_4312653_5 two-component system K02485 - - 0.000000000000002531 81.0
DYD3_k127_4312653_6 Histidine kinase-, DNA gyrase B-, and HSP90-like - - - 0.000000000002023 79.0
DYD3_k127_4312653_7 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 GO:0003674,GO:0003824,GO:0003942,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.38 0.000000002106 63.0
DYD3_k127_4312653_8 Bacterial regulatory protein, Fis family - - - 0.0000001105 63.0
DYD3_k127_4312653_9 Winged helix-turn-helix DNA-binding - - - 0.00003408 53.0
DYD3_k127_4330433_0 LAO AO transport system ATPase K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009473 301.0
DYD3_k127_4330433_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001203 288.0
DYD3_k127_4330433_10 COG3668 Plasmid stabilization system protein - - - 0.00000000000005816 78.0
DYD3_k127_4330433_11 - - - - 0.000000009875 63.0
DYD3_k127_4330433_12 Prenyltransferase and squalene oxidase repeat K18115 - 4.2.1.137 0.0000001423 65.0
DYD3_k127_4330433_13 DNA binding protein - - - 0.0002875 51.0
DYD3_k127_4330433_2 B12 binding domain K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000008365 195.0
DYD3_k127_4330433_3 eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA K03238 - - 0.00000000000000000000000000000000000000000000000005384 186.0
DYD3_k127_4330433_4 Phosphoesterase PA-phosphatase - - - 0.000000000000000000000000000003975 132.0
DYD3_k127_4330433_5 Aldo/keto reductase family - - - 0.0000000000000000000000000001875 118.0
DYD3_k127_4330433_6 pfam mofrl K11529 - 2.7.1.165 0.000000000000000000005809 107.0
DYD3_k127_4330433_7 COG1122 ABC-type cobalt transport system, ATPase component K16786,K16787 - - 0.00000000000000000003917 103.0
DYD3_k127_4330433_8 SMART regulatory protein, Crp K07730 - - 0.00000000000000002734 92.0
DYD3_k127_4330433_9 - - - - 0.000000000000004092 81.0
DYD3_k127_4330896_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000002383 173.0
DYD3_k127_4330896_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000009616 181.0
DYD3_k127_4330896_2 Nucleotidyltransferase domain K07075 - - 0.000000000000000000000000000000002915 132.0
DYD3_k127_4330896_3 COGs COG2361 conserved - - - 0.0000000000000000001005 93.0
DYD3_k127_4330896_4 Fic/DOC family - - - 0.0000003124 58.0
DYD3_k127_4345207_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 2.351e-211 697.0
DYD3_k127_4345207_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 - 1.4.1.2,1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 519.0
DYD3_k127_4469179_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.000000000000000002798 96.0
DYD3_k127_4469179_1 PFAM chaperonin Cpn60 TCP-1 K22447 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0044183,GO:0051082,GO:0061077 - 0.0007889 49.0
DYD3_k127_44750_0 helix_turn_helix ASNC type - - - 0.00006316 52.0
DYD3_k127_4483892_0 Aldolase/RraA K13831 - 4.1.2.43,5.3.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 455.0
DYD3_k127_4483892_1 Vacuolar iron transporter - - - 0.00000000006224 73.0
DYD3_k127_4575568_0 Peptidase family M20/M25/M40 K01438,K05831 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000145 251.0
DYD3_k127_4575568_1 protease with the C-terminal PDZ domain - - - 0.00000000000000000000000000000000003958 144.0
DYD3_k127_4575568_2 Catalyzes the transfer of the amino group of L-glutamate to LysW -aminoadipate 6-semialdehyde, generating LysW -gamma-L- lysine K05830 - - 0.00000000000000000000000000000007639 127.0
DYD3_k127_4575930_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009338 450.0
DYD3_k127_4575930_1 Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids K15888 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000001121 274.0
DYD3_k127_4575930_2 TraB family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004713 258.0
DYD3_k127_4575930_3 COG1994 Zn-dependent proteases - - - 0.000000000000000000000000000000000234 147.0
DYD3_k127_4575930_4 AMP-binding enzyme - - - 0.000000000000003533 85.0
DYD3_k127_4575930_5 Lytic polysaccharide mono-oxygenase, cellulose-degrading K03933 - - 0.0009913 49.0
DYD3_k127_4578204_0 Nucleolar GTP-binding protein 1 (NOG1) K06943 - - 0.00000000000000000000000000000000000000000000000000000000000000000005151 245.0
DYD3_k127_4578204_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000003538 214.0
DYD3_k127_4578204_10 - - - - 0.00007532 55.0
DYD3_k127_4578204_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000008104 224.0
DYD3_k127_4578204_3 TIGRFAM DNA-directed RNA polymerase K03049 - 2.7.7.6 0.000000000000000000000000000000000000000000001163 170.0
DYD3_k127_4578204_4 Glycosyltransferase Family 4 K00743 - 2.4.1.87 0.000000000000000000000000000001492 135.0
DYD3_k127_4578204_5 mannose-ethanolamine phosphotransferase activity - - - 0.000000000000000000002385 108.0
DYD3_k127_4578204_6 polysaccharide biosynthetic process - - - 0.000000002251 70.0
DYD3_k127_4578204_7 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179,K19668 GO:0005575,GO:0005576 3.2.1.4,3.2.1.91 0.000001127 58.0
DYD3_k127_4578204_8 Protein of unknown function (DUF998) - - - 0.00002309 55.0
DYD3_k127_4578204_9 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000471 53.0
DYD3_k127_4606917_0 Has ATPase and non-specific DNA-binding activities K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007838 298.0
DYD3_k127_4606917_1 Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) K07732 - 2.7.1.161 0.0000000000000000000000000000000000000000000000002457 187.0
DYD3_k127_4606917_2 Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs K07254 GO:0001510,GO:0002128,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.206 0.0000000000000000000000000000000000000000001467 171.0
DYD3_k127_4619042_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.23e-198 657.0
DYD3_k127_4619042_1 Exchanges the guanine residue with 7-cyano-7- deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- loop) of archaeal tRNAs K18779 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 472.0
DYD3_k127_4619042_2 PFAM Sodium hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000005182 250.0
DYD3_k127_4619042_3 Cytidylyltransferase-like K00952 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.7.1 0.0000000000000001644 84.0
DYD3_k127_4754182_0 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 486.0
DYD3_k127_4754182_1 Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis K18933 - 4.1.1.11,4.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002774 323.0
DYD3_k127_4754182_2 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000000001736 169.0
DYD3_k127_4754182_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000004775 157.0
DYD3_k127_4754182_4 Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions K02201 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.00000000000000000000000000000000000005352 149.0
DYD3_k127_4754182_5 Catalyzes a salvage reaction resulting in the formation of IMP that is energically less costly than de novo synthesis K00759 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.2.7 0.0000000000000000000000000000008661 135.0
DYD3_k127_4837193_0 Cell division protein 48 (CDC48), domain 2 K13525 - - 1.435e-279 876.0
DYD3_k127_4855018_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.57e-268 856.0
DYD3_k127_4855018_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 1.583e-253 801.0
DYD3_k127_4855018_10 shikimate kinase activity K00891 - 2.7.1.71 0.0000000001544 74.0
DYD3_k127_4855018_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003875 322.0
DYD3_k127_4855018_3 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000002324 249.0
DYD3_k127_4855018_4 Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2- amino-3,7-dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids K16306 - 2.2.1.10,4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000002984 223.0
DYD3_k127_4855018_5 Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3- dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis K11646 - 1.4.1.24 0.0000000000000000000000000000000000000000001281 180.0
DYD3_k127_4855018_6 SMART Cystathionine beta-synthase, core - - - 0.0000000000000000000000000000000000000001437 160.0
DYD3_k127_4855018_7 Hexapeptide repeat of succinyl-transferase - - - 0.000000000000000000000000000000000002179 143.0
DYD3_k127_4855018_8 regulator of amino acid metabolism, contains ACT domain K07103 - - 0.000000000000000000000000000000000752 140.0
DYD3_k127_4855018_9 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000008147 122.0
DYD3_k127_4870409_0 binds to the 23S rRNA K02921 - - 0.0000000000000000000003889 99.0
DYD3_k127_4870409_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03059 - 2.7.7.6 0.00000903 59.0
DYD3_k127_4870409_2 DNA binding protein - - - 0.0001256 53.0
DYD3_k127_4876161_0 Isocitrate isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 340.0
DYD3_k127_4876161_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0018130,GO:0019178,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042578,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000002749 269.0
DYD3_k127_4876161_2 amino acid K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003696 270.0
DYD3_k127_4876161_3 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 GO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000002777 237.0
DYD3_k127_4876161_4 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.0000000000000000000000004885 112.0
DYD3_k127_4876161_5 COG0681 Signal peptidase I K13280 - 3.4.21.89 0.000000000000000001124 99.0
DYD3_k127_4876161_6 protein conserved in archaea - - - 0.000001824 57.0
DYD3_k127_4901317_0 Cytochrome C biogenesis protein transmembrane region - - - 0.00000001336 67.0
DYD3_k127_4907061_0 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000001156 147.0
DYD3_k127_4907061_1 ATP-dependent DNA helicase (RecQ) K03654 - 3.6.4.12 0.00000000003347 72.0
DYD3_k127_4908322_0 ATP-grasp domain K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 336.0
DYD3_k127_4908322_1 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 340.0
DYD3_k127_4931039_0 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02323 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 391.0
DYD3_k127_4931039_1 Methyltransferase type 11 - - - 0.0000000000000000007346 94.0
DYD3_k127_4953757_0 protein conserved in archaea - - - 0.000002842 56.0
DYD3_k127_4958004_0 Sigma-70 like region 4 HTH domain-containing protein - - - 0.0009007 49.0
DYD3_k127_49621_0 DNA-binding transcription factor activity - - - 0.000000000000000000000000000002619 125.0
DYD3_k127_49621_1 DNA polymerase III K02342 - 2.7.7.7 0.00000000000000000000000001671 119.0
DYD3_k127_49621_2 Transcriptional regulator - - - 0.00000000000000000005305 100.0
DYD3_k127_49621_3 archaeal Zn-finger protein - - - 0.00000000002953 73.0
DYD3_k127_49621_4 - - - - 0.0000003022 54.0
DYD3_k127_49621_5 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000001301 51.0
DYD3_k127_4971601_0 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000169 218.0
DYD3_k127_4971601_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000001697 207.0
DYD3_k127_4971601_2 D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo K09716 - 3.1.1.96 0.0000000000000000000000000000000001129 147.0
DYD3_k127_4971601_3 Domain of unknown function (DUF4332) - - - 0.00000000000013 84.0
DYD3_k127_4985499_0 PFAM short-chain dehydrogenase reductase SDR K15314 - - 0.0 1566.0
DYD3_k127_4985499_1 PFAM carboxyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 372.0
DYD3_k127_4985499_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07062 - - 0.00002564 52.0
DYD3_k127_5024021_0 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity K03547,K05970 - 3.1.1.53 0.000000000000000000000000000000000000000000000000000003247 205.0
DYD3_k127_5024021_1 P-loop containing region of AAA domain K03546 - - 0.0000000006554 65.0
DYD3_k127_5032725_0 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003093 340.0
DYD3_k127_5032725_1 PFAM fumarate reductase succinate dehydrogenase flavoprotein K00239,K00278 GO:0000104,GO:0000166,GO:0001539,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0006113,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016491,GO:0016627,GO:0022607,GO:0022900,GO:0030030,GO:0030031,GO:0032991,GO:0033554,GO:0036094,GO:0040011,GO:0043167,GO:0043168,GO:0044085,GO:0044237,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044780,GO:0044781,GO:0045273,GO:0045274,GO:0045283,GO:0045284,GO:0045333,GO:0048037,GO:0048870,GO:0050660,GO:0050662,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0055114,GO:0070469,GO:0070470,GO:0070925,GO:0071840,GO:0071944,GO:0071949,GO:0071973,GO:0097159,GO:0097588,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363 1.3.5.1,1.3.5.4,1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 305.0
DYD3_k127_5032725_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.00000000000000000000000000000000000000000000000000000000000000000000000000002105 268.0
DYD3_k127_5032725_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000007629 244.0
DYD3_k127_5032725_4 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA K04799 - - 0.000000000000000000000000000000000003608 149.0
DYD3_k127_5032725_5 - - - - 0.00000002143 67.0
DYD3_k127_5083304_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 350.0
DYD3_k127_5083304_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000007529 211.0
DYD3_k127_5083304_2 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000004871 199.0
DYD3_k127_5083304_3 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.0000000000000000000000000000000000000000000002004 181.0
DYD3_k127_5083304_4 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00826 - 2.6.1.42 0.000000000000000000000000000000000000000003431 168.0
DYD3_k127_5083304_5 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000007885 147.0
DYD3_k127_5083304_6 negative regulation of tumor necrosis factor (ligand) superfamily member 11 production K06569 GO:0007610,GO:0007635,GO:0008150,GO:0009605,GO:0009607,GO:0009620,GO:0042048,GO:0042221,GO:0043207,GO:0050896,GO:0051704,GO:0051707 - 0.0000000000000000000000007025 116.0
DYD3_k127_5083304_7 - - - - 0.000000000005083 77.0
DYD3_k127_5083304_8 Domain of unknown function (DUF4430) - - - 0.0005024 51.0
DYD3_k127_5087726_0 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 412.0
DYD3_k127_5087726_1 COG3387 Glucoamylase and related glycosyl hydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004848 392.0
DYD3_k127_5087726_10 Belongs to the carbohydrate kinase PfkB family K00852 - 2.7.1.15 0.00000000000000000000000001051 123.0
DYD3_k127_5087726_11 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000006366 108.0
DYD3_k127_5087726_12 ACT domain protein - - - 0.000003923 56.0
DYD3_k127_5087726_13 Protein of unknown function (DUF2934) - - - 0.0003284 46.0
DYD3_k127_5087726_14 Belongs to the UPF0201 family K09736 - - 0.0003575 48.0
DYD3_k127_5087726_2 DNA polymerase LigD, polymerase domain K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 356.0
DYD3_k127_5087726_3 PFAM Cys Met metabolism K01758,K01760 - 4.4.1.1,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 337.0
DYD3_k127_5087726_4 Cystathionine beta-synthase K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 340.0
DYD3_k127_5087726_5 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001692 293.0
DYD3_k127_5087726_6 Starch synthase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001796 285.0
DYD3_k127_5087726_7 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000002352 243.0
DYD3_k127_5087726_8 DNA polymerase X K02347 - - 0.00000000000000000000000000000000000000000000000000000000000007885 224.0
DYD3_k127_5087726_9 PFAM peptidase M50 - - - 0.000000000000000000000000000000000000000000000000000002833 209.0
DYD3_k127_511865_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000009276 240.0
DYD3_k127_511865_1 LysM domain K03046,K03641,K08642 - 2.7.7.6 0.000000000000000000000007006 103.0
DYD3_k127_511865_2 CARDB - - - 0.0000000000000000000004514 113.0
DYD3_k127_5132037_0 With S4 and S12 plays an important role in translational accuracy K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000007733 254.0
DYD3_k127_5132037_1 Belongs to the eukaryotic ribosomal protein eS4 family K02987 - - 0.00000000000000000000000000000000000000000000000000000000005922 212.0
DYD3_k127_5132037_10 binds to the 23S rRNA K02885 - - 0.0000000000000000000000000000000000007423 150.0
DYD3_k127_5132037_11 Involved in regulation of DNA replication K10725 - - 0.0000000000000000000000000002946 116.0
DYD3_k127_5132037_12 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 - - 0.000000000000000000000000000632 121.0
DYD3_k127_5132037_13 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000006814 113.0
DYD3_k127_5132037_14 protein conserved in archaea - - - 0.000000000004636 74.0
DYD3_k127_5132037_15 Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends K03538 - 3.1.26.5 0.000000003279 61.0
DYD3_k127_5132037_16 Binds 16S rRNA, required for the assembly of 30S particles K02954 - - 0.000000007517 66.0
DYD3_k127_5132037_17 binds to the 23S rRNA K02876 - - 0.0000001865 59.0
DYD3_k127_5132037_2 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000001686 205.0
DYD3_k127_5132037_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000002486 203.0
DYD3_k127_5132037_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000002952 184.0
DYD3_k127_5132037_5 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000006864 181.0
DYD3_k127_5132037_6 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000001457 173.0
DYD3_k127_5132037_7 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000000003739 163.0
DYD3_k127_5132037_8 ribosomal protein K02907 - - 0.00000000000000000000000000000000000000002974 159.0
DYD3_k127_5132037_9 structural constituent of ribosome K02912 - - 0.00000000000000000000000000000000000001307 153.0
DYD3_k127_5141280_0 Possible Fer4-like domain in RNase L inhibitor, RLI K06174 - - 2.392e-217 691.0
DYD3_k127_5141280_1 TIGRFAM Small GTP-binding protein K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 367.0
DYD3_k127_5141280_2 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000001292 268.0
DYD3_k127_5141280_3 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000001334 270.0
DYD3_k127_5141280_4 Multicopper oxidase - - - 0.00000000000000000000000000000000000000003136 173.0
DYD3_k127_5141280_5 RNA methylase K07446 - 2.1.1.213 0.000000000000000000000000000000000001096 153.0
DYD3_k127_5141280_6 Glucose sorbosone - - - 0.0005348 52.0
DYD3_k127_5156099_0 COG0608 Single-stranded DNA-specific exonuclease K07463 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001853 282.0
DYD3_k127_5156099_1 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03433 GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0019538,GO:0019774,GO:0030163,GO:0032991,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.00000000000000000000000000000001047 136.0
DYD3_k127_5156099_2 threonine-type endopeptidase activity K02725,K13141 GO:0000003,GO:0000502,GO:0001530,GO:0001673,GO:0001703,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005839,GO:0005844,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0006997,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0007369,GO:0007370,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009987,GO:0010004,GO:0010498,GO:0015630,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030163,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0036211,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0051603,GO:0051704,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080134,GO:0097159,GO:0097367,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369,GO:1990904 3.4.25.1 0.0000001648 63.0
DYD3_k127_5163190_0 DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks K03726 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 560.0
DYD3_k127_5163190_1 Acyl-CoA dehydrogenase, C-terminal domain K00248,K18244 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 406.0
DYD3_k127_5163190_2 ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 322.0
DYD3_k127_5163190_4 nuclease activity - - - 0.000000000008341 68.0
DYD3_k127_5163190_5 Protein of unknown function (DUF2683) - - - 0.000000003703 63.0
DYD3_k127_5163190_6 PFAM blue (type 1) copper domain protein - - - 0.00000126 54.0
DYD3_k127_5163190_7 KEOPS complex Cgi121-like subunit K09119 - - 0.00003284 54.0
DYD3_k127_5167960_0 PFAM Radical SAM - - - 0.000000000000000000000000000000000000001305 164.0
DYD3_k127_5288825_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005254 438.0
DYD3_k127_5288825_1 Histidine kinase - - - 0.00001095 58.0
DYD3_k127_5302657_0 dioxygenase K00457,K16421 - 1.13.11.27,1.13.11.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007792 334.0
DYD3_k127_5302657_1 Fatty acid desaturase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002802 278.0
DYD3_k127_5302657_2 Phenylacetate-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000004475 207.0
DYD3_k127_5302657_3 Domain of unknown function (DUF1905) - - - 0.0000000000000001335 81.0
DYD3_k127_5302657_4 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000002297 59.0
DYD3_k127_5302657_5 PFAM Blue (type 1) copper domain - - - 0.0006758 48.0
DYD3_k127_5306691_0 Protein of unknown function (DUF1246) K06863 - 6.3.4.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 518.0
DYD3_k127_5306691_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 378.0
DYD3_k127_5306691_2 Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair K02683 - - 0.0000000000000000000000000000000000000000000000000000000001897 222.0
DYD3_k127_5306691_3 Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair K18882 - - 0.00000000000000000000000000000000000000000000000008532 198.0
DYD3_k127_5306691_5 Psort location Cytoplasmic, score 8.96 - - - 0.0000001387 57.0
DYD3_k127_5318696_0 Beta-Casp domain K07577 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 410.0
DYD3_k127_5318696_1 homogentisate 12-dioxygenase K00451 - 1.13.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 365.0
DYD3_k127_5318696_10 Polyketide cyclase / dehydrase and lipid transport - - - 0.0002091 50.0
DYD3_k127_5318696_11 Haloacid dehalogenase domain protein hydrolase, type 3 - - - 0.0005701 51.0
DYD3_k127_5318696_2 Glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001387 300.0
DYD3_k127_5318696_3 Mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001303 260.0
DYD3_k127_5318696_4 Domain of unknown function (DUF373) K08975 - - 0.000000000000000000000000000000000000000000000000000000004716 213.0
DYD3_k127_5318696_5 COG1335 Amidases related to nicotinamidase - - - 0.000000000000000000000000000000000000000000007735 171.0
DYD3_k127_5318696_6 Fatty acid desaturase - - - 0.00000000000000000000000000000000000003892 146.0
DYD3_k127_5318696_7 Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6- hydroxymethyl-7,8-dihydropterin diphosphate (6-HMDP) K07142 - 2.7.6.3 0.0000000000000000000000000000000000004934 149.0
DYD3_k127_5318696_8 dioxygenase K00457,K16421 - 1.13.11.27,1.13.11.46 0.000000000000000000000000000000000001418 142.0
DYD3_k127_5318696_9 Ferredoxin - - - 0.0000000000000000000003728 113.0
DYD3_k127_5320903_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 475.0
DYD3_k127_5320903_1 TIGRFAM phage SPO1 DNA polymerase-related protein K21929 GO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 0.000000000000000000000000000000000000000002155 165.0
DYD3_k127_5433812_0 TIGRFAM isocitrate dehydrogenase, NADP-dependent, prokaryotic type K00031 - 1.1.1.42 1.153e-200 631.0
DYD3_k127_5433812_1 - - - - 0.00000000000000000000000000000000000000000006128 166.0
DYD3_k127_5433812_10 Cytochrome C biogenesis protein transmembrane region - - - 0.0000001234 63.0
DYD3_k127_5433812_11 PFAM peptidase M6, immune inhibitor A K09607 - - 0.00000878 56.0
DYD3_k127_5433812_12 - - - - 0.0001643 51.0
DYD3_k127_5433812_2 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000158 155.0
DYD3_k127_5433812_3 Protein of unknown function DUF72 - - - 0.0000000000000000000000003497 115.0
DYD3_k127_5433812_4 Domain of unknown function (DUF378) K09779 - - 0.00000000000000116 79.0
DYD3_k127_5433812_5 PFAM peptidase U32 K08303 - - 0.0000000000001843 78.0
DYD3_k127_5433812_6 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000002773 76.0
DYD3_k127_5433812_7 Periplasmic protein thiol disulfide oxidoreductase, DsbE subfamily - - - 0.000000001065 66.0
DYD3_k127_5433812_8 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000002709 64.0
DYD3_k127_5433812_9 TIGRFAM phosphate binding protein K02040 - - 0.0000001113 63.0
DYD3_k127_5434719_0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity K01955 - 6.3.5.5 0.0 1217.0
DYD3_k127_5434719_1 transporter antisigma-factor antagonist STAS K01673,K03321 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 456.0
DYD3_k127_5434719_2 Belongs to the CarA family K01956 GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002811 376.0
DYD3_k127_5434719_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 338.0
DYD3_k127_5434719_4 glycosyl transferase family - - - 0.0000000000000000000000000000000000000000004885 176.0
DYD3_k127_5434719_5 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000006752 156.0
DYD3_k127_5434719_6 Belongs to the UPF0434 family - - - 0.000000000001232 78.0
DYD3_k127_5434719_7 phosphorelay signal transduction system - - - 0.00001442 55.0
DYD3_k127_5437492_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K03234 - - 1.981e-290 916.0
DYD3_k127_5437492_1 - - - - 0.000000000000000000000000000000000000008866 158.0
DYD3_k127_5437492_2 phosphoesterase RecJ domain protein K07463 - - 0.00000000001682 74.0
DYD3_k127_5447559_0 FAD dependent oxidoreductase K00313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000693 342.0
DYD3_k127_5447559_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001488 254.0
DYD3_k127_5447559_10 Protein of unknown function (DUF1272) K09984 - - 0.0000001146 59.0
DYD3_k127_5447559_11 SdrD B-like domain - - - 0.00000188 61.0
DYD3_k127_5447559_12 Sulfur transfer protein involved in thiamine biosynthesis K03154,K21947 GO:0003674,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031386,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070647,GO:0071704,GO:1901564 2.8.1.15 0.00003261 50.0
DYD3_k127_5447559_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000000001648 214.0
DYD3_k127_5447559_3 PFAM peptidylprolyl isomerase FKBP-type K01802,K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000002607 169.0
DYD3_k127_5447559_4 abc-type fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.0000000000000000000000000000000000000000000526 169.0
DYD3_k127_5447559_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000003545 147.0
DYD3_k127_5447559_6 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000001256 148.0
DYD3_k127_5447559_7 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.00000000000000000000000000003078 131.0
DYD3_k127_5447559_8 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S - - - 0.000000000000000000000000597 110.0
DYD3_k127_5447559_9 Protein of unknown function (DUF2723) - - - 0.0000000000000000000001752 113.0
DYD3_k127_5488239_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007459 393.0
DYD3_k127_5488239_1 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001071 287.0
DYD3_k127_5488239_2 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002809 272.0
DYD3_k127_5488239_3 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0019439,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000008286 272.0
DYD3_k127_5488239_4 Lysyl oxidase - - - 0.0000000000005777 82.0
DYD3_k127_5488239_5 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0009451,GO:0009987,GO:0016070,GO:0016740,GO:0016741,GO:0032259,GO:0034641,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:1901360 2.1.1.166 0.0002065 44.0
DYD3_k127_5496238_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000003136 218.0
DYD3_k127_5496238_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000003935 198.0
DYD3_k127_5496238_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00332 - 1.6.5.3 0.0000000000000000000000003861 112.0
DYD3_k127_5496238_3 membrane protein domain - - - 0.0000000000000000000000113 109.0
DYD3_k127_5496238_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000001184 102.0
DYD3_k127_5496238_5 Transcriptional regulator PadR-like family K10947 - - 0.00000000000000000000002448 113.0
DYD3_k127_5496238_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000004475 94.0
DYD3_k127_5512956_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 452.0
DYD3_k127_5512956_1 acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009764 349.0
DYD3_k127_5553166_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000314 248.0
DYD3_k127_5553166_1 Belongs to the DNA glycosylase MPG family K03652 GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 0.00000000000000000000000000000000000000000000000000001107 196.0
DYD3_k127_5553166_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000001555 164.0
DYD3_k127_5553166_3 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K07575 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000103 147.0
DYD3_k127_5553166_4 Pfam:DUF552 K09152 - - 0.000000000000000000000006149 109.0
DYD3_k127_5553166_6 PFAM nucleic acid binding, OB-fold, tRNA helicase-type K07466 - - 0.00002077 55.0
DYD3_k127_5673510_0 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000001378 136.0
DYD3_k127_5673510_1 Membrane K20276 - - 0.000000000000000000000000377 119.0
DYD3_k127_5673510_2 - - - - 0.0009819 49.0
DYD3_k127_5781079_0 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 322.0
DYD3_k127_5781079_1 SNF2 family N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003992 271.0
DYD3_k127_5781079_2 Ribosomal RNA adenine dimethylases K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.0000000000000000000000004829 116.0
DYD3_k127_5781079_3 PFAM nitrogen-fixing NifU domain protein - - - 0.000000000000000000001191 98.0
DYD3_k127_5796428_0 malic enzyme K00027 - 1.1.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007517 559.0
DYD3_k127_5796428_1 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 389.0
DYD3_k127_5796428_10 - - - - 0.00000000000000000000000000000000000000000000000000000001839 210.0
DYD3_k127_5796428_11 TIGRFAM daunorubicin resistance ABC transporter ATPase subunit K01990 - - 0.000000000000000000000000000000000000000000005257 173.0
DYD3_k127_5796428_12 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000002397 119.0
DYD3_k127_5796428_13 Transcriptional regulator, ArsR family - - - 0.000000000000000000000001513 111.0
DYD3_k127_5796428_14 histidyl-tRNA synthetase - - - 0.000000000000001096 87.0
DYD3_k127_5796428_15 but it may be involved in stabilization of the trimeric complex - - - 0.000002408 53.0
DYD3_k127_5796428_16 - - - - 0.0001781 50.0
DYD3_k127_5796428_17 PFAM helix-turn-helix HxlR type - - - 0.0004352 49.0
DYD3_k127_5796428_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 382.0
DYD3_k127_5796428_3 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 368.0
DYD3_k127_5796428_4 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 335.0
DYD3_k127_5796428_5 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 331.0
DYD3_k127_5796428_6 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 294.0
DYD3_k127_5796428_7 Transketolase, pyridine binding domain protein K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004601 296.0
DYD3_k127_5796428_8 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003291 279.0
DYD3_k127_5796428_9 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005688 276.0
DYD3_k127_5889702_0 Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs K16317 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.257 0.00000000000000000000000000000000008922 142.0
DYD3_k127_5889702_1 - - - - 0.0000000000000000000000000001466 122.0
DYD3_k127_5889702_2 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000001564 117.0
DYD3_k127_5898556_0 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000004216 152.0
DYD3_k127_5898556_1 PA domain - - - 0.000000000001544 79.0
DYD3_k127_6001171_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005481 307.0
DYD3_k127_6001171_1 FeS assembly SUF system protein SufT - - - 0.00000000000000000000000000000000000000001968 161.0
DYD3_k127_6001171_2 nUDIX hydrolase K01515,K08310 - 3.6.1.13,3.6.1.67 0.0000000000000000000000000003754 123.0
DYD3_k127_6001171_3 SUF system FeS assembly protein K04488 - - 0.000000000000000001165 86.0
DYD3_k127_6001171_4 PFAM DNA polymerase, beta domain protein region K07075 - - 0.0000002494 57.0
DYD3_k127_6001171_5 Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA K04800 - - 0.0000004763 53.0
DYD3_k127_6001171_6 Protein of unknown function DUF86 - - - 0.000005398 56.0
DYD3_k127_6074736_0 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 342.0
DYD3_k127_6074736_1 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000004641 72.0
DYD3_k127_6074736_2 Copper binding proteins, plastocyanin/azurin family - - - 0.00000002837 57.0
DYD3_k127_6091512_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 381.0
DYD3_k127_6091512_1 ACT domain - - - 0.00000000000000000000002409 108.0
DYD3_k127_6121291_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0061505,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 508.0
DYD3_k127_6121291_1 domain, Protein - - - 0.0000000000000000000000000000000000000000001783 178.0
DYD3_k127_6125049_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 507.0
DYD3_k127_6125049_1 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 372.0
DYD3_k127_6125049_2 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000001607 154.0
DYD3_k127_6125049_3 PFAM 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.000000000000000000000000000001773 126.0
DYD3_k127_6125049_4 Ferredoxin - - - 0.00000000000000000000007034 108.0
DYD3_k127_6125049_5 Thioesterase superfamily K07107 - - 0.000000000000000000003856 103.0
DYD3_k127_6125049_6 AMP binding - - - 0.000000000000605 78.0
DYD3_k127_6125049_7 - - - - 0.0000009244 56.0
DYD3_k127_6125049_8 TM2 domain - - - 0.00008238 49.0
DYD3_k127_6157712_0 S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF- 2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis K20215 - 2.1.1.98 0.0000007138 53.0
DYD3_k127_617003_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006586 272.0
DYD3_k127_617003_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000001082 148.0
DYD3_k127_617003_2 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 GO:0000049,GO:0002161,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097159,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000001065 78.0
DYD3_k127_6215647_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006434 364.0
DYD3_k127_6215647_1 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000002684 130.0
DYD3_k127_6215647_2 Has ATPase and non-specific DNA-binding activities K07456 - - 0.000000000000000000000000002682 123.0
DYD3_k127_6215647_3 Belongs to the UPF0218 family K09735 - - 0.0000000000000000000000003857 115.0
DYD3_k127_6215647_4 Winged helix-turn-helix DNA-binding - - - 0.00000000005357 74.0
DYD3_k127_6215647_5 LVIVD repeat - - - 0.0003104 54.0
DYD3_k127_6218336_0 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 384.0
DYD3_k127_6218336_1 Putative exonuclease SbcCD, C subunit K03546 - - 0.00000000000000000000000000000000004553 154.0
DYD3_k127_6228824_0 ABC transporter K01990 - - 0.0000000000000000000000000000001076 132.0
DYD3_k127_6228824_1 Cytochrome c assembly protein K02195 - - 0.00000000000000000000002195 108.0
DYD3_k127_6228824_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000718 81.0
DYD3_k127_6228824_3 DNA binding protein - - - 0.0000003197 60.0
DYD3_k127_6232344_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1045.0
DYD3_k127_6232344_1 Helix-hairpin-helix DNA-binding motif class 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 410.0
DYD3_k127_6232344_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000237 229.0
DYD3_k127_6232344_3 dehydrogenase complex catalyzes the overall conversion of - - - 0.000000000000000000000000000000000000000459 170.0
DYD3_k127_6232344_4 Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange K04484 - - 0.000000000000000000000000000000006163 141.0
DYD3_k127_6232344_5 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000177 130.0
DYD3_k127_6232344_6 phosphoglycerate mutase K02226,K22316 - 3.1.26.4,3.1.3.73 0.00000000000000000000000000002289 126.0
DYD3_k127_6232344_7 EamA-like transporter family - - - 0.00000000000000000002431 101.0
DYD3_k127_6232344_8 - - - - 0.000008814 58.0
DYD3_k127_6232565_0 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000000000000000000000001599 191.0
DYD3_k127_6232565_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03047 - 2.7.7.6 0.000000000000000000000000000000000000000000000001478 189.0
DYD3_k127_6232565_2 Located on the platform of the 30S subunit K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000004754 175.0
DYD3_k127_6232565_3 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000002268 155.0
DYD3_k127_6237656_0 Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex K03264 - - 0.0000000000000000000000000000000000000000000000000000000007144 208.0
DYD3_k127_6237656_1 May be involved in maturation of the 30S ribosomal subunit K02966 - - 0.00000000000000000000000000000000000000000000002974 174.0
DYD3_k127_6237656_2 Belongs to the PDCD5 family K06875 - - 0.0000000000000007044 86.0
DYD3_k127_6237656_3 Belongs to the ribosomal protein L31e family K02910 - - 0.000000000000002082 85.0
DYD3_k127_6237656_4 Belongs to the eukaryotic ribosomal protein eL39 family K02924 - - 0.000000000002038 68.0
DYD3_k127_6237656_5 - - - - 0.00000007043 56.0
DYD3_k127_6237656_6 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000002056 54.0
DYD3_k127_6237656_7 PFAM Ribosomal LX protein K02944 - - 0.0007259 45.0
DYD3_k127_6364370_0 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02322 - 2.7.7.7 0.0 1187.0
DYD3_k127_6364370_1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01585 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004808 518.0
DYD3_k127_6364370_2 Sarcosine oxidase K00303 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 362.0
DYD3_k127_6364370_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000001603 234.0
DYD3_k127_6364370_4 2Fe-2S iron-sulfur cluster binding domain K00302 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000005144 209.0
DYD3_k127_6364370_5 Transglutaminase-like domain - - - 0.000000000000000000000002248 121.0
DYD3_k127_6364370_6 cellulase activity - - - 0.00000000000000001944 98.0
DYD3_k127_6364370_7 PFAM BFD-like 2Fe-2S -binding - - - 0.00000000000000005529 86.0
DYD3_k127_6364370_8 PAC2 family K06869 - - 0.0000000000002403 80.0
DYD3_k127_6364370_9 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000001127 74.0
DYD3_k127_6364883_0 Polyprenyl synthetase K00805 - 2.5.1.30 0.000000000000000000000000000000000000009216 160.0
DYD3_k127_6364883_1 Belongs to the HpcH HpaI aldolase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.0000000000000000004713 88.0
DYD3_k127_6364883_2 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.0000004399 62.0
DYD3_k127_6364883_3 IclR helix-turn-helix domain - - - 0.000008543 58.0
DYD3_k127_6378004_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005608 502.0
DYD3_k127_6378004_1 Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA K04801 GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 418.0
DYD3_k127_6378004_2 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.000000000000000000000004696 108.0
DYD3_k127_6378004_3 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.000000000003825 76.0
DYD3_k127_638731_0 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 367.0
DYD3_k127_638731_1 Tonb-dependent siderophore receptor K02014 - - 0.000003382 59.0
DYD3_k127_6394521_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007872 247.0
DYD3_k127_6394521_1 PKD domain K01179,K19668 - 3.2.1.4,3.2.1.91 0.0000000003382 73.0
DYD3_k127_6394521_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179,K19668 GO:0005575,GO:0005576 3.2.1.4,3.2.1.91 0.00000006579 66.0
DYD3_k127_6394521_3 - - - - 0.0000003472 63.0
DYD3_k127_6416455_0 Urocanase C-terminal domain K01712 - 4.2.1.49 2.635e-205 659.0
DYD3_k127_6416455_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - - 5.428e-200 634.0
DYD3_k127_6416455_2 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity K00134,K00150,K03340 - 1.2.1.12,1.2.1.59,1.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009653 380.0
DYD3_k127_6416455_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004917 281.0
DYD3_k127_6416455_4 A G-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007132 261.0
DYD3_k127_6416455_5 Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000002291 209.0
DYD3_k127_6416455_6 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000006669 203.0
DYD3_k127_6416455_7 Alpha/beta hydrolase family K22318 - - 0.0000000000000000000000000000000000000000000000000009427 198.0
DYD3_k127_6416455_8 Cytochrome C assembly protein K02198 - - 0.000000000000000000000000000000000000000002257 179.0
DYD3_k127_6416455_9 CAAX protease self-immunity K07052 - - 0.0000001259 62.0
DYD3_k127_6449667_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 292.0
DYD3_k127_6449667_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000001226 206.0
DYD3_k127_6449667_2 amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000001433 190.0
DYD3_k127_6449667_3 Prolyl oligopeptidase family - - - 0.00000000000000000000001926 112.0
DYD3_k127_6463227_0 Pfam:DUF137 K09722 - 6.3.2.36 0.0000000000000000000000000000000000000000000000000000000000000001227 235.0
DYD3_k127_6463227_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000003945 137.0
DYD3_k127_6473145_0 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004083 430.0
DYD3_k127_6473145_1 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 339.0
DYD3_k127_647846_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001157 259.0
DYD3_k127_647846_1 Fic/DOC family - - - 0.0000000000000000000000000000000155 137.0
DYD3_k127_647846_2 Catalyzes the formation of CDP-2,3-bis-(O- geranylgeranyl)-sn-glycerol (CDP-archaeol) from 2,3-bis-(O- geranylgeranyl)-sn-glycerol 1-phosphate (DGGGP) and CTP. This reaction is the third ether-bond-formation step in the biosynthesis of archaeal membrane lipids K19664 - 2.7.7.67 0.0000000000000000000000005203 117.0
DYD3_k127_6488979_0 Belongs to the peptidase S16 family K04076 - 3.4.21.53 0.0000000000000000000000000000000000000000005191 165.0
DYD3_k127_6488979_1 - - - - 0.00000000001282 76.0
DYD3_k127_654046_0 Belongs to the LDH MDH superfamily K00024 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000003108 258.0
DYD3_k127_6574908_0 Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs K07583 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000001216 267.0
DYD3_k127_6574908_1 TOBE domain K02062,K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000702 201.0
DYD3_k127_6574908_2 Deoxyhypusine synthase K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000004133 208.0
DYD3_k127_6574908_3 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000008421 193.0
DYD3_k127_6574908_4 Binding-protein-dependent transport system inner membrane component K02063 - - 0.0000000000000000000000002449 114.0
DYD3_k127_6574908_5 PFAM Uncharacterised protein family UPF0150 - - - 0.0000000000001176 73.0
DYD3_k127_6574908_6 HicA toxin of bacterial toxin-antitoxin, - - - 0.0002964 44.0
DYD3_k127_6580435_0 phosphatidylinositol metabolic process - - - 0.000000000000000000000000000000000000000002021 171.0
DYD3_k127_6580435_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000005593 88.0
DYD3_k127_6580435_2 CDP-alcohol phosphatidyltransferase K00995,K00999 GO:0003674,GO:0003824,GO:0003881,GO:0003882,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.11,2.7.8.5 0.0002269 53.0
DYD3_k127_6653439_0 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.000000000000000000000000000000000000000000000000000000004408 212.0
DYD3_k127_6653439_1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits K10742 - 3.6.4.12 0.00000000000000000000000000000000000000006969 170.0
DYD3_k127_6654168_0 COG0624, acetylornithine deacetylase succinyl-diaminopimelate desuccinylase and related deacylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 297.0
DYD3_k127_6654168_1 Domain of unknown function DUF83 K07464 - 3.1.12.1 0.000000000000000000000000008395 122.0
DYD3_k127_6662593_0 Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs K03177,K11131 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 347.0
DYD3_k127_6662593_1 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 337.0
DYD3_k127_6662593_2 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000002325 222.0
DYD3_k127_6662593_3 adenylate kinase activity K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000003895 189.0
DYD3_k127_6662593_4 Integral membrane protein DUF106 - - - 0.000000000000000000000000000002337 130.0
DYD3_k127_6662593_5 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.00000000000000000000000001171 124.0
DYD3_k127_6662593_6 Electron transfer flavoprotein domain - - - 0.00000000000004696 83.0
DYD3_k127_6662593_7 Psort location Cytoplasmic, score K03521,K22431 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016627,GO:0016628,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363 1.3.1.108 0.0000009457 60.0
DYD3_k127_6662593_8 CAAX protease self-immunity - - - 0.000002589 59.0
DYD3_k127_6672733_0 TCP-1/cpn60 chaperonin family K22447 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0044183,GO:0051082,GO:0061077 - 3.213e-205 652.0
DYD3_k127_6672733_1 COG0553 Superfamily II DNA RNA helicases, SNF2 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 426.0
DYD3_k127_6672733_2 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000424 286.0
DYD3_k127_6672733_3 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000001329 117.0
DYD3_k127_6672733_4 domain, Protein - - - 0.000000000000000000001187 112.0
DYD3_k127_6672733_5 Transcriptional regulator, ArsR family - - - 0.00000000000000002953 96.0
DYD3_k127_6672733_6 of the RND superfamily - - - 0.0000000000001877 85.0
DYD3_k127_6672733_7 PFAM S-layer - - - 0.000009496 60.0
DYD3_k127_6685606_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009418 532.0
DYD3_k127_6685606_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 463.0
DYD3_k127_6685606_2 metal-dependent hydrolase (Urease superfamily) K07049 - - 0.0000000000000000000000000000000000000000000000001485 191.0
DYD3_k127_6685606_3 this gene contains a nucleotide ambiguity which may be the result of a sequencing error - - - 0.0000000000000000001013 102.0
DYD3_k127_6685606_4 amino acid K03294 - - 0.00000006208 62.0
DYD3_k127_6685606_5 - - - - 0.0006895 50.0
DYD3_k127_6686749_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K03231 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007713 606.0
DYD3_k127_6686749_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 510.0
DYD3_k127_6686749_10 HxlR-like helix-turn-helix - - - 0.0000000000000000000445 93.0
DYD3_k127_6686749_11 Belongs to the SUI1 family K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000008449 81.0
DYD3_k127_6686749_12 Lysyl oxidase - - - 0.00000000002303 76.0
DYD3_k127_6686749_13 - - - - 0.0000000004305 68.0
DYD3_k127_6686749_14 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000003103 65.0
DYD3_k127_6686749_15 - - - - 0.000005742 55.0
DYD3_k127_6686749_2 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 420.0
DYD3_k127_6686749_3 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007068 400.0
DYD3_k127_6686749_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000009247 257.0
DYD3_k127_6686749_5 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000002871 172.0
DYD3_k127_6686749_6 methylamine metabolic process K03885,K15977 - 1.6.99.3 0.00000000000000000000000000000000000007268 146.0
DYD3_k127_6686749_7 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000001399 135.0
DYD3_k127_6686749_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000006063 127.0
DYD3_k127_6686749_9 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor K06072 - 1.14.99.29 0.0000000000000000000002259 98.0
DYD3_k127_6699797_0 Protein of unknown function, DUF255 K06888 - - 9.984e-199 640.0
DYD3_k127_6699797_1 ThiF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001076 247.0
DYD3_k127_6699797_2 catechol 2,3-dioxygenase activity K07104 - 1.13.11.2 0.000000000000000000000000000000000000000000000000000000000000001306 224.0
DYD3_k127_6699797_3 - - - - 0.0009146 51.0
DYD3_k127_6704060_0 FAD linked oxidases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000003679 228.0
DYD3_k127_6704060_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000003136 193.0
DYD3_k127_6721875_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 366.0
DYD3_k127_6721875_1 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000000001586 151.0
DYD3_k127_6721875_2 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000004652 147.0
DYD3_k127_6721875_3 Transglutaminase-like superfamily - - - 0.000000000003506 81.0
DYD3_k127_672285_0 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 443.0
DYD3_k127_6741030_0 Xylose isomerase-like TIM barrel K01151 - 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000004253 237.0
DYD3_k127_6741030_1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B K02823 - - 0.00000000000000000000000000000000000000000002743 174.0
DYD3_k127_6741030_2 PFAM sugar isomerase (SIS) K08094 - 5.3.1.27 0.0000000000000000000000000000000002479 138.0
DYD3_k127_6741030_3 Lrp/AsnC ligand binding domain - - - 0.00000000000000000000000000000007049 125.0
DYD3_k127_6741030_4 nucleotide metabolic process - - - 0.0000000000000000000000000544 117.0
DYD3_k127_6741030_5 Cleaves both 3' and 5' ssDNA extremities of branched DNA structures K07503 - - 0.00000003189 61.0
DYD3_k127_675547_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K03330 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 472.0
DYD3_k127_675547_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K09482 - 6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005961 299.0
DYD3_k127_675547_2 Maf-like protein K06287 - - 0.00000000000000000000000000002032 126.0
DYD3_k127_675547_3 Cytotoxic translational repressor of toxin-antitoxin stability system K06218 - - 0.000001381 54.0
DYD3_k127_6785351_0 RIO1 family K07178 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000003487 207.0
DYD3_k127_6785351_1 K homology RNA-binding domain K06961 - - 0.00000000000000000000000000000000000000000000002377 184.0
DYD3_k127_6785351_2 dehydratase - - - 0.000000000000000000000000000000000000001759 162.0
DYD3_k127_6785351_3 Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits K03236 - - 0.00000000000000000000000000000000003952 138.0
DYD3_k127_6785351_4 PFAM thymidylate kinase K00943 - 2.7.4.9 0.0000000000000000000000000000000605 139.0
DYD3_k127_6785351_5 COG2301 Citrate lyase beta subunit K01644 - 4.1.3.34 0.0000000000000000001618 95.0
DYD3_k127_6869932_0 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004881 411.0
DYD3_k127_6869932_1 Conserved hypothetical ATP binding protein K06883 - - 0.0000000000000000000000000000000000000000000000000000000000001586 226.0
DYD3_k127_6869932_2 molybdopterin binding domain - - - 0.000000000000000000000000005187 121.0
DYD3_k127_6976545_0 Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) K03124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 522.0
DYD3_k127_6976756_0 Domain of unknown function (DUF4382) - - - 0.0000000000007673 76.0
DYD3_k127_6976756_1 this gene contains a nucleotide ambiguity which may be the result of a sequencing error - - - 0.0000000002598 65.0
DYD3_k127_6976756_2 IclR helix-turn-helix domain - - - 0.0000002418 56.0
DYD3_k127_6976756_3 metallopeptidase activity - - - 0.0000376 57.0
DYD3_k127_7000059_0 Peptidase M1 membrane alanine aminopeptidase K01256,K08776 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009375 477.0
DYD3_k127_7021154_0 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.0000000000006528 79.0
DYD3_k127_7024511_0 Radical_SAM C-terminal domain K07739 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006098 289.0
DYD3_k127_7024511_1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000004215 148.0
DYD3_k127_7024511_2 Thioesterase-like superfamily K07107 - - 0.00000000000000000000007567 108.0
DYD3_k127_717760_0 Belongs to the HMG-CoA reductase family K00054 - 1.1.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000008875 244.0
DYD3_k127_717760_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000003736 224.0
DYD3_k127_717760_2 Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs K07254 - 2.1.1.206 0.000000000000000000000000000000002613 136.0
DYD3_k127_717760_3 Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to translocate with the RNA polymerase following initiation and acts by binding to the non template strand of the transcription bubble in elongation complexes K03136 - - 0.00000000000000005932 87.0
DYD3_k127_7217204_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 330.0
DYD3_k127_7217204_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004081 271.0
DYD3_k127_7217204_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.15 0.0000000000000000000000000000000000000003132 156.0
DYD3_k127_7217204_3 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.000000007065 63.0
DYD3_k127_7217204_4 Involved in resistance toward heavy metals K03926 GO:0003674,GO:0005488,GO:0005507,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0022607,GO:0042221,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0046688,GO:0046872,GO:0046914,GO:0050896,GO:0051259,GO:0051260,GO:0065003,GO:0071840 - 0.000000008078 66.0
DYD3_k127_7217204_5 PFAM YcfA-like protein - - - 0.000001627 52.0
DYD3_k127_7231787_0 C-5 cytosine-specific DNA methylase K00558 - 2.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005278 440.0
DYD3_k127_7231787_1 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 338.0
DYD3_k127_7231787_10 - - - - 0.0000000003971 74.0
DYD3_k127_7231787_11 ParB-like nuclease domain - - - 0.000000001727 67.0
DYD3_k127_7231787_12 cell adhesion - - - 0.000000005495 66.0
DYD3_k127_7231787_13 - - - - 0.0000004097 61.0
DYD3_k127_7231787_15 nUDIX hydrolase - - - 0.00001842 56.0
DYD3_k127_7231787_17 Pfam Right handed beta helix region - - - 0.0002795 52.0
DYD3_k127_7231787_18 Phage gp6-like head-tail connector protein - - - 0.0009007 49.0
DYD3_k127_7231787_2 TIGRFAM phage major capsid protein, HK97 family - - - 0.0000000000000000000000000000000000000000000000000000000000000002193 236.0
DYD3_k127_7231787_3 Phage portal protein - - - 0.000000000000000000000000000000000000000000000000000000006668 215.0
DYD3_k127_7231787_4 TIGRFAM Phage - - - 0.0000000000000000000000000000000000000000000000000000009184 211.0
DYD3_k127_7231787_5 Caudovirus prohead serine protease - - - 0.0000000000000000000000000000000002119 138.0
DYD3_k127_7231787_6 HNH endonuclease - - - 0.00000000000000000000000000449 120.0
DYD3_k127_7231787_7 DnaJ molecular chaperone homology domain - - - 0.00000000000000001195 91.0
DYD3_k127_7231787_9 Recombination endonuclease VII - - - 0.000000000000429 77.0
DYD3_k127_736416_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008515 340.0
DYD3_k127_736416_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 320.0
DYD3_k127_736416_2 TAP-like protein - - - 0.000000000000000004791 88.0
DYD3_k127_736416_3 RNA methylase K07579 - - 0.00000000000003491 77.0
DYD3_k127_803151_0 PFAM type II secretion system protein E K07332 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 445.0
DYD3_k127_803151_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009583 333.0
DYD3_k127_803151_10 PBP superfamily domain K02040 - - 0.000000387 56.0
DYD3_k127_803151_11 Circadian clock protein KaiC - - - 0.0006243 51.0
DYD3_k127_803151_2 Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004675 269.0
DYD3_k127_803151_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005734 281.0
DYD3_k127_803151_4 phosphate binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003142 256.0
DYD3_k127_803151_5 Phosphate uptake regulator, PhoU - - - 0.000000000000000000000000000000000000000000000000001143 196.0
DYD3_k127_803151_6 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000006571 151.0
DYD3_k127_803151_7 Type II secretion system (T2SS), protein F K07333 - - 0.00000000000000000000000000000003073 144.0
DYD3_k127_803151_8 Type II secretion system (T2SS), protein F K07333 - - 0.0000000000000000000001611 111.0
DYD3_k127_803151_9 PFAM regulatory protein, ArsR - - - 0.00000000001319 76.0
DYD3_k127_839003_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 393.0
DYD3_k127_839003_1 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000568 216.0
DYD3_k127_839003_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000271 121.0
DYD3_k127_839003_3 Belongs to the NadC ModD family K00767 GO:0003674,GO:0003824,GO:0004514,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016054,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034213,GO:0034641,GO:0034654,GO:0042737,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0072526,GO:0090407,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 2.4.2.19 0.000000000000000000000000005266 117.0
DYD3_k127_839003_4 HxlR-like helix-turn-helix - - - 0.000000000000008197 82.0
DYD3_k127_905658_0 DNA topoisomerase K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001535 285.0
DYD3_k127_905730_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005427 460.0
DYD3_k127_905730_1 Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000839 293.0
DYD3_k127_905730_2 Quinolinate synthetase A protein K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009293 280.0
DYD3_k127_905730_3 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases - - - 0.0000000000000000000000000000000000000000000000000000004915 205.0
DYD3_k127_905730_4 methyltransferase - - - 0.00000000000000000000000000003637 134.0
DYD3_k127_905730_5 Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids K06981 - 2.7.4.26 0.0000000000000000000008101 109.0
DYD3_k127_905730_6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03056 - 2.7.7.6 0.00000000000002704 76.0
DYD3_k127_905730_7 Glycosyltransferase family 87 - - - 0.000000000006189 80.0
DYD3_k127_905730_8 Glycosyltransferase WbsX - - - 0.00000000001864 78.0
DYD3_k127_905730_9 - - - - 0.000000001678 63.0
DYD3_k127_909560_0 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000003598 172.0
DYD3_k127_912820_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 516.0
DYD3_k127_912820_1 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor K06072 GO:0000226,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006417,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009268,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0030447,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036176,GO:0036177,GO:0036178,GO:0036211,GO:0040007,GO:0042710,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044764,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051604,GO:0051703,GO:0051704,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090605,GO:0090609,GO:1901564,GO:2000112,GO:2000765 1.14.99.29 0.000000000000000000000000004632 117.0
DYD3_k127_912820_2 helix_turn_helix ASNC type - - - 0.00000000000001792 78.0
DYD3_k127_914537_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 383.0
DYD3_k127_914537_1 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001204 244.0
DYD3_k127_914537_2 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.0000000000000000000000000000000000000004042 160.0
DYD3_k127_914537_3 endonuclease III K01247 - 3.2.2.21 0.0000000000000000000000000000002038 143.0
DYD3_k127_952529_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 302.0
DYD3_k127_952529_1 Urate oxidase N-terminal - - - 0.00000000003209 68.0
DYD3_k127_961073_0 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003011 331.0
DYD3_k127_961073_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000001327 179.0
DYD3_k127_961073_2 PFAM multicopper oxidase K22348 - 1.16.3.3 0.00000000000000000000000000001766 130.0
DYD3_k127_961073_3 Helix-turn-helix domain - - - 0.00000001601 61.0
DYD3_k127_961073_4 Copper binding proteins, plastocyanin/azurin family - - - 0.000001894 53.0
DYD3_k127_961073_5 - - - - 0.000002346 54.0
DYD3_k127_979388_0 Cysteine desulfurase K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008379 542.0
DYD3_k127_979388_1 FeS assembly ATPase SufC K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 297.0
DYD3_k127_979388_2 ABC-type transport system involved in Fe-S cluster assembly, permease component K07033,K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001799 281.0
DYD3_k127_979388_3 TIGRFAM SUF system FeS K04488 - - 0.00000000000000000000000000000002257 129.0
DYD3_k127_989251_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000003765 212.0
DYD3_k127_989251_1 Domain of unknown function (DUF2935) - - - 0.0000000000000000000000000000000000000000000000000254 192.0
DYD3_k127_989251_2 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000002839 158.0
DYD3_k127_989251_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000002692 120.0
DYD3_k127_989251_4 Belongs to the eukaryotic ribosomal protein eL18 family K02883 - - 0.00000000000000000000000008059 115.0
DYD3_k127_989251_5 RNA polymerases N / 8 kDa subunit K03007 GO:0000428,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006360,GO:0006366,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 - 0.00000000000000004614 84.0
DYD3_k127_989251_6 4 iron, 4 sulfur cluster binding - - - 0.0000000000003202 76.0
DYD3_k127_989251_7 Electron transfer flavoprotein domain - - - 0.000001013 52.0
DYD3_k127_999488_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 369.0
DYD3_k127_999488_1 bacterial-type flagellum-dependent cell motility - - - 0.000002004 59.0