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Overview

ID MAG00970
Name DYD3_bin.45
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Nitrospirota
Class JACRHJ01
Order JACRHJ01
Family
Genus
Species
Assembly information
Completeness (%) 60.25
Contamination (%) 0.01
GC content (%) 62.0
N50 (bp) 3,706
Genome size (bp) 1,364,714

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1507

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1043223_0 phosphorelay signal transduction system K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003859 520.0
DYD3_k127_1043223_1 Member of the two-component regulatory system ZraS ZraR. May function as a membrane-associated protein kinase that phosphorylates ZraR in response to high concentrations of zinc or lead in the medium K07709 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010288,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0031224,GO:0031226,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071241,GO:0071248,GO:0071284,GO:0071294,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.0000000000000000000000000000004748 127.0
DYD3_k127_1043223_2 Type IV pilin PilA K02650 GO:0005575,GO:0005623,GO:0009289,GO:0042995,GO:0044464 - 0.00000000000000000000000000372 120.0
DYD3_k127_1043223_3 Type IV pilin PilA K02650 GO:0005575,GO:0005623,GO:0009289,GO:0042995,GO:0044464 - 0.0000000000000000005458 93.0
DYD3_k127_1048993_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 408.0
DYD3_k127_1048993_1 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000008448 160.0
DYD3_k127_1048993_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000002139 134.0
DYD3_k127_1051584_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 599.0
DYD3_k127_1051584_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 409.0
DYD3_k127_1051584_2 Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000007757 194.0
DYD3_k127_1058021_0 ATP-binding protein K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008683 274.0
DYD3_k127_1058021_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000001974 213.0
DYD3_k127_1058021_2 Winged helix-turn-helix DNA-binding - - - 0.000000000000000000000000000000000000000000000000002085 190.0
DYD3_k127_1058021_3 Transport permease protein K09690 - - 0.0000000000000000000000000000000000000000000000003981 187.0
DYD3_k127_1066388_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000003407 149.0
DYD3_k127_1066388_1 transporter antisigma-factor antagonist STAS K04749 - - 0.0000000243 59.0
DYD3_k127_1066388_2 sigma factor antagonist activity K04757 - 2.7.11.1 0.00000006748 65.0
DYD3_k127_1082755_0 PFAM Glycosyl transferase, family 20 K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 612.0
DYD3_k127_1082755_1 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 399.0
DYD3_k127_1082755_2 mechanosensitive ion channel K16052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004923 377.0
DYD3_k127_1082755_3 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000001887 262.0
DYD3_k127_1082755_4 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00007463 45.0
DYD3_k127_1125726_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 7.08e-258 815.0
DYD3_k127_1125726_1 amino acid K03294,K13868 - - 0.00000005025 55.0
DYD3_k127_1129671_0 Efflux ABC transporter, permease protein K02004 - - 0.00000000000000000000000000000000000000000000005969 181.0
DYD3_k127_1129671_1 NosL K19342 - - 0.0000000000001384 77.0
DYD3_k127_1129671_2 Domain of unknown function (DUF4418) - - - 0.00000000004635 68.0
DYD3_k127_1155918_0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 1.173e-201 643.0
DYD3_k127_1155918_1 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000048 276.0
DYD3_k127_1155918_2 plastoquinone (Complex I) K12141 - - 0.000000000000000000000000004814 114.0
DYD3_k127_1161959_0 HAD superfamily K07025 - - 0.00000000000000000000000000000000000000000003336 169.0
DYD3_k127_1161959_1 VanZ like family - - - 0.0000000000000005321 84.0
DYD3_k127_1161959_2 PFAM response regulator receiver - - - 0.000000009917 64.0
DYD3_k127_1161959_3 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.00000007723 56.0
DYD3_k127_1179550_0 HypF finger K04656 - - 0.000000000000000000000000000000000000001259 153.0
DYD3_k127_1179550_1 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000184 76.0
DYD3_k127_1179550_2 PilZ domain - - - 0.0000004804 57.0
DYD3_k127_1185446_0 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008356 328.0
DYD3_k127_1185446_1 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001951 265.0
DYD3_k127_1185446_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000003009 96.0
DYD3_k127_1199677_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 473.0
DYD3_k127_1199677_1 arylsulfatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000146 280.0
DYD3_k127_1199677_2 queuosine biosynthetic process K03470,K09765 - 1.17.99.6,3.1.26.4 0.000000000000000000000000000000000000000000000000000000009797 211.0
DYD3_k127_1199677_3 PFAM Nitroreductase family - - - 0.0000000000000000000000000000000000000000001611 166.0
DYD3_k127_1200581_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 502.0
DYD3_k127_1200581_1 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 285.0
DYD3_k127_1202119_0 TIGRFAM sulfite reductase, dissimilatory-type alpha subunit K11180 - 1.8.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 574.0
DYD3_k127_1202119_1 TIGRFAM sulfite reductase, dissimilatory-type beta subunit K11181 - 1.8.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 514.0
DYD3_k127_1202119_2 lyase activity - - - 0.00000000000000000000000001677 117.0
DYD3_k127_1202119_3 DsrH like protein K07237 - - 0.00000000000000000000004721 101.0
DYD3_k127_1202119_4 PFAM DsrE family protein K07236 - - 0.0000000000000002777 80.0
DYD3_k127_1244242_0 Lysine-2,3-aminomutase K01843 - 5.4.3.2 8.389e-221 695.0
DYD3_k127_1244242_1 Putative RNA methylase family UPF0020 K15460 - 2.1.1.223 0.000000000000000000000000000000000000004016 153.0
DYD3_k127_1244242_2 PFAM GCN5-related N-acetyltransferase K21935 - 2.3.1.264 0.0000000000000887 73.0
DYD3_k127_1251697_0 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003458 580.0
DYD3_k127_1251697_1 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008811 398.0
DYD3_k127_1251697_2 glycosyl transferase family 2 K21349 - 2.4.1.268 0.000000000002801 68.0
DYD3_k127_125630_0 sensor histidine kinase response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002028 297.0
DYD3_k127_1256326_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 441.0
DYD3_k127_1256326_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004847 430.0
DYD3_k127_1256326_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 287.0
DYD3_k127_1256326_3 Pterin binding enzyme K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000051 278.0
DYD3_k127_1256326_4 YbbR-like protein - - - 0.00000000000000000000000000000004403 133.0
DYD3_k127_1261242_0 - - - - 8.637e-228 712.0
DYD3_k127_1261242_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000005407 207.0
DYD3_k127_1266249_0 alcohol dehydrogenase K00008 - 1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005329 379.0
DYD3_k127_1266249_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000002433 202.0
DYD3_k127_1266249_2 - - - - 0.00000000000000000000002607 104.0
DYD3_k127_127533_0 Domains REC, HisKA, HATPase_c - - - 0.00000000000000000000000000000000000000000000000000000008973 222.0
DYD3_k127_127533_1 PFAM ATP-binding region, ATPase domain protein K07636 - 2.7.13.3 0.0000000000000000000000000000000000000001272 166.0
DYD3_k127_127533_2 Histidine kinase - - - 0.000000000000000000000000024 127.0
DYD3_k127_1277192_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008669 270.0
DYD3_k127_1277192_1 hopanoid biosynthesis associated protein HpnK - - - 0.000000000000000000000000000000000000000000000000000004519 199.0
DYD3_k127_1277192_2 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000004947 187.0
DYD3_k127_1277192_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.0000000000000000000000000000000000000000000000002913 184.0
DYD3_k127_127998_0 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001146 284.0
DYD3_k127_127998_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000005546 229.0
DYD3_k127_127998_2 protein conserved in bacteria (DUF2168) - - - 0.0000000000000000000000000000000000000000000000000000000003486 207.0
DYD3_k127_127998_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000001847 157.0
DYD3_k127_127998_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000007609 63.0
DYD3_k127_128900_0 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000005332 224.0
DYD3_k127_128900_1 Linear amide C-N hydrolases, choloylglycine hydrolase family K01442 - 3.5.1.24 0.0000000000000000000000000000000000000000000000000000000008073 214.0
DYD3_k127_128900_2 radical SAM domain protein - - - 0.00000000000000000000000000003538 120.0
DYD3_k127_1309709_0 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008351 522.0
DYD3_k127_1309709_1 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 418.0
DYD3_k127_1309709_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 414.0
DYD3_k127_1309709_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000002205 239.0
DYD3_k127_1309709_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000005863 206.0
DYD3_k127_1309709_5 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00171,K00172 - 1.2.7.1 0.000000000000000000000000000000001814 134.0
DYD3_k127_1309709_6 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000166,GO:0000287,GO:0000820,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006541,GO:0006542,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008882,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0010565,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019222,GO:0019752,GO:0030554,GO:0031323,GO:0032553,GO:0032555,GO:0032559,GO:0033238,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.42,2.7.7.89 0.0001291 46.0
DYD3_k127_1323454_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 460.0
DYD3_k127_1323454_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000724 281.0
DYD3_k127_1323454_2 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000002712 149.0
DYD3_k127_1323454_3 PFAM PEGA domain - - - 0.0000000000004083 83.0
DYD3_k127_1323454_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000008153 65.0
DYD3_k127_1324630_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002129 290.0
DYD3_k127_1324630_1 PFAM MltA K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003419 279.0
DYD3_k127_1365920_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K01142,K10773 - 3.1.11.2,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 297.0
DYD3_k127_1365920_1 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004638 273.0
DYD3_k127_1365920_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000004328 225.0
DYD3_k127_1365920_3 PFAM Late competence development protein ComFB K02241 - - 0.00000002214 60.0
DYD3_k127_1407808_0 Family of unknown function (DUF438) K09155 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 442.0
DYD3_k127_1407808_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 - 2.3.1.29,2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 362.0
DYD3_k127_1407808_2 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000001982 228.0
DYD3_k127_1407808_3 Catalyzes the transformation of pimelate into pimeloyl- CoA with concomitant hydrolysis of ATP to AMP K01906 - 6.2.1.14 0.000000000000000000000000000000000000000000000001133 183.0
DYD3_k127_1412083_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 3.885e-216 681.0
DYD3_k127_1412083_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 472.0
DYD3_k127_1412083_2 Tetrapyrrole (Corrin/Porphyrin) Methylases K05934,K21479 - 2.1.1.131,2.1.1.272 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004042 277.0
DYD3_k127_1412083_3 Cobalamin biosynthesis protein CbiG K02189 - 3.7.1.12 0.000000000000000000000000000000000000006029 153.0
DYD3_k127_1413115_0 Capsule assembly protein Wzi - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 530.0
DYD3_k127_1413115_1 Bacterial sugar transferase K00996 - 2.7.8.6 0.0000000000000000000000000000000000000000006535 158.0
DYD3_k127_1413115_2 IMG reference gene - - - 0.00000001867 65.0
DYD3_k127_1433293_0 PFAM Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000006595 259.0
DYD3_k127_1433293_1 PFAM Hemerythrin HHE cation binding domain K07216 - - 0.0000000000000000000000000000000000000000837 154.0
DYD3_k127_1433293_2 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000004231 145.0
DYD3_k127_1433293_3 - - - - 0.000000000000001783 81.0
DYD3_k127_1456569_0 Part of a membrane complex involved in electron transport K03614 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 357.0
DYD3_k127_1456569_1 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003401 254.0
DYD3_k127_1456569_2 Part of a membrane complex involved in electron transport K03613 - - 0.0000000000000000000000000000000000000000000000000000000000000001106 228.0
DYD3_k127_1456569_3 electron transport complex, RnfABCDGE type, B subunit K03616 - - 0.000000000000000000000000000000000000000000000000000000000006334 213.0
DYD3_k127_1456569_4 Part of a membrane complex involved in electron transport K03612 - - 0.000000000000000000000000000000007066 135.0
DYD3_k127_1456569_5 PFAM Respiratory-chain NADH dehydrogenase 51 Kd subunit K03615 - - 0.00000000000000000000000000000001312 129.0
DYD3_k127_1492431_0 GAF domain K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 523.0
DYD3_k127_1492431_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000003291 134.0
DYD3_k127_149281_0 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 325.0
DYD3_k127_149281_1 PFAM Glycosyl hydrolase family 3 N terminal domain K01207,K05349 - 3.2.1.21,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000001966 241.0
DYD3_k127_1493601_0 thymidylate synthase (FAD) activity K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 323.0
DYD3_k127_1493601_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009064 316.0
DYD3_k127_1494077_0 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.0000000000000000000000000000000000000000004993 162.0
DYD3_k127_1494077_1 DoxX K15977 - - 0.000000000000000000000000000000000000000002344 160.0
DYD3_k127_1494077_2 Protein of unknown function (DUF3047) - - - 0.000000000004554 67.0
DYD3_k127_1500323_0 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004667 288.0
DYD3_k127_1500323_1 ABC transporter K02003 - - 0.0000000000000000000000000000001678 131.0
DYD3_k127_1500323_2 Outer membrane efflux protein K12340 - - 0.000000000000002107 81.0
DYD3_k127_1502681_0 COG1233 Phytoene dehydrogenase and related - - - 0.000000000000000000000000000000000000000000000000003224 196.0
DYD3_k127_1502681_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000004336 103.0
DYD3_k127_1502681_2 Belongs to the SUA5 family K07566 - 2.7.7.87 0.0000001027 58.0
DYD3_k127_1508520_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004702 438.0
DYD3_k127_1508520_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0005401 43.0
DYD3_k127_152363_0 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 4.573e-200 634.0
DYD3_k127_152363_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 339.0
DYD3_k127_152363_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000003805 169.0
DYD3_k127_152363_3 Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites) K03653 - 4.2.99.18 0.0000000000000000000000000000000001259 141.0
DYD3_k127_152363_4 holo-[acyl-carrier-protein] synthase activity K00997 - 2.7.8.7 0.00000000000000000000000002652 113.0
DYD3_k127_1526987_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008644 450.0
DYD3_k127_1526987_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 477.0
DYD3_k127_1526987_2 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000006109 211.0
DYD3_k127_1526987_3 Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000002676 138.0
DYD3_k127_1543711_0 ATP synthase subunit J K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 382.0
DYD3_k127_1543711_1 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000001843 263.0
DYD3_k127_1543711_2 PFAM TrkA-N domain K03499 - - 0.0000000000000000000000000000000000000000000000000000003756 214.0
DYD3_k127_1543711_3 Thiol disulfide interchange protein K04084 - 1.8.1.8 0.00000000000000000000000000000000000000001147 161.0
DYD3_k127_1543711_4 NmrA-like family - - - 0.0000264 51.0
DYD3_k127_1545804_0 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 1.743e-202 646.0
DYD3_k127_1545804_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000003511 147.0
DYD3_k127_1545804_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000005471 52.0
DYD3_k127_1554969_0 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 3.18e-208 669.0
DYD3_k127_1554969_1 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000114 249.0
DYD3_k127_1554969_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000000000000000000000000001685 213.0
DYD3_k127_1554969_3 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000002676 196.0
DYD3_k127_1554969_4 - - - - 0.0000000000000000000000000000000000006795 147.0
DYD3_k127_1558195_0 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000004069 154.0
DYD3_k127_1558195_1 protein histidine kinase activity - - - 0.0000000000000000000129 106.0
DYD3_k127_1558195_2 Bacteriophage CI repressor helix-turn-helix domain - - - 0.0000004479 58.0
DYD3_k127_1559840_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 343.0
DYD3_k127_1559840_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 334.0
DYD3_k127_1559840_2 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006324 295.0
DYD3_k127_1559840_3 Protein of unknown function DUF116 K09729 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 290.0
DYD3_k127_1559840_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.000000000000000000000000000000000000000000000001257 179.0
DYD3_k127_1559840_5 PASTA K12132 - 2.7.11.1 0.00000000000000000000009813 107.0
DYD3_k127_1600069_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 1.807e-212 670.0
DYD3_k127_1600069_1 PFAM Positive regulator of sigma(E) RseC MucC K03803 - - 0.0009203 49.0
DYD3_k127_1620359_0 PFAM Aminotransferase class I and II K04720 - 4.1.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 293.0
DYD3_k127_1620359_1 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003745 278.0
DYD3_k127_1620359_2 Histidine kinase K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000165 280.0
DYD3_k127_1620359_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000004554 147.0
DYD3_k127_1620359_4 COG2199 FOG GGDEF domain - - - 0.0000000000000000001637 104.0
DYD3_k127_162479_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 7.705e-204 645.0
DYD3_k127_162479_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 398.0
DYD3_k127_162479_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000001184 222.0
DYD3_k127_162479_3 N-6 DNA Methylase - - - 0.000000000000000000001296 98.0
DYD3_k127_1657168_0 Sensor histidine kinase, HAMP domain-containing K07644 - 2.7.13.3 0.0000000000000000000000000000000000000000000000001105 188.0
DYD3_k127_1657168_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000003826 78.0
DYD3_k127_1657168_2 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. - - - 0.0004395 45.0
DYD3_k127_1671359_0 HEAT repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005147 299.0
DYD3_k127_1671359_1 PAS fold - - - 0.000000000000000000000000000388 121.0
DYD3_k127_1697040_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 2.804e-198 635.0
DYD3_k127_1697040_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002346 267.0
DYD3_k127_1697040_2 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000005665 183.0
DYD3_k127_1697040_3 DNA-binding transcription factor activity K03655,K03892,K21903 - 3.6.4.12 0.000000000000001286 81.0
DYD3_k127_1697040_4 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.00000000003787 63.0
DYD3_k127_1697040_5 Chromate resistance exported protein - - - 0.000000002025 60.0
DYD3_k127_1697040_6 PFAM DsrE DsrF-like family - - - 0.00000007177 59.0
DYD3_k127_1708872_0 Pyridoxal-phosphate dependent enzyme K06001 - 4.2.1.20 7.252e-211 663.0
DYD3_k127_1708872_1 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000008379 74.0
DYD3_k127_1754046_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 509.0
DYD3_k127_1754046_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 434.0
DYD3_k127_1754046_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 372.0
DYD3_k127_1754046_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000000000266 136.0
DYD3_k127_1754046_4 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000005569 136.0
DYD3_k127_17559_0 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 311.0
DYD3_k127_17559_1 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 301.0
DYD3_k127_17559_2 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.00000000000000000000000000000000000000000000004061 178.0
DYD3_k127_17559_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000008786 151.0
DYD3_k127_17559_4 Formyl transferase K11175 - 2.1.2.2 0.0000000000000000000000000000449 117.0
DYD3_k127_17559_5 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 0.0000004471 51.0
DYD3_k127_1789457_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004002 255.0
DYD3_k127_1789457_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006758 258.0
DYD3_k127_1789457_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000004938 152.0
DYD3_k127_1798237_0 B12 binding domain K04034 - 1.21.98.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 368.0
DYD3_k127_1798237_1 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000801 212.0
DYD3_k127_1798237_2 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000009091 61.0
DYD3_k127_1825068_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 437.0
DYD3_k127_1825068_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009493 248.0
DYD3_k127_1825068_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000005959 190.0
DYD3_k127_1825068_3 Peptidase M50 - - - 0.00000000000000000000000000000000000004177 149.0
DYD3_k127_1838034_0 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006229 286.0
DYD3_k127_1838034_1 Lipid A biosynthesis K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000001035 250.0
DYD3_k127_1838034_2 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000001151 160.0
DYD3_k127_1838034_3 TIGRFAM lipopolysaccharide heptosyltransferase II K02843 - - 0.0000000000000000000000000000000000000003408 152.0
DYD3_k127_1838371_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336,K05299 - 1.17.1.10,1.6.5.3 2.126e-204 666.0
DYD3_k127_1838371_1 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 512.0
DYD3_k127_1838371_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 499.0
DYD3_k127_1838371_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005776 326.0
DYD3_k127_1838371_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000001332 236.0
DYD3_k127_1838371_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000274 176.0
DYD3_k127_1838371_6 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000008842 143.0
DYD3_k127_18482_0 Type II/IV secretion system protein K02454,K02652 - - 2.611e-219 701.0
DYD3_k127_18482_1 Type II secretion system (T2SS), protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 354.0
DYD3_k127_18482_2 Pilus assembly protein K02662 - - 0.000000003148 62.0
DYD3_k127_185275_0 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000006276 178.0
DYD3_k127_185275_1 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000001686 152.0
DYD3_k127_185275_2 Protein of unknown function (DUF2621) - - - 0.0001484 47.0
DYD3_k127_186213_0 Evidence 2b Function of strongly homologous gene - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009569 473.0
DYD3_k127_186213_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005295 409.0
DYD3_k127_1868529_0 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 351.0
DYD3_k127_1868529_1 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 301.0
DYD3_k127_1868529_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001133 269.0
DYD3_k127_1868529_3 - - - - 0.000000000000000000000000000000000000000000004704 164.0
DYD3_k127_1870620_0 PFAM ABC transporter K02006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006619 277.0
DYD3_k127_1870620_1 PFAM cobalamin (vitamin B12) biosynthesis CbiM protein K02007 - - 0.000000000000000000000000000000000000000000000000000000000000000000109 235.0
DYD3_k127_1870620_2 TIGRFAM cobalt ABC transporter, permease protein CbiQ K02008 - - 0.0000000000000000000000000000000000000000000000000000000000000000001543 238.0
DYD3_k127_1870620_3 Protein serine threonine phosphatase K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000004918 230.0
DYD3_k127_1870620_4 Large extracellular alpha-helical protein K16915 - - 0.000000000000000000000000000008284 126.0
DYD3_k127_1871661_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 517.0
DYD3_k127_1871661_1 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000004819 267.0
DYD3_k127_1871661_2 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.0000000000000000000000000000000000000000002013 165.0
DYD3_k127_1871661_3 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000000001944 115.0
DYD3_k127_1871661_4 PFAM type II secretion system protein E K02669 - - 0.0000017 50.0
DYD3_k127_1902118_0 Belongs to the glycosyl hydrolase 57 family K03406,K16149 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18 9.115e-199 634.0
DYD3_k127_1902118_1 Domain of unknown function (DUF1844) - - - 0.0000000000000001327 85.0
DYD3_k127_1902118_2 Putative regulatory protein - - - 0.00000000002128 65.0
DYD3_k127_1950422_0 AAA ATPase, central domain protein K07478 - - 0.0000000000000000000000000000001218 130.0
DYD3_k127_1950422_1 Cytochrome C oxidase, cbb3-type, subunit III K08906 - - 0.000000000000000000000002836 106.0
DYD3_k127_1950422_2 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000001835 74.0
DYD3_k127_1950422_3 - - - - 0.0006452 48.0
DYD3_k127_1960914_0 NAD synthase K01916 - 6.3.1.5 1.053e-198 632.0
DYD3_k127_1960914_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000008162 261.0
DYD3_k127_1964274_0 Na H antiporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000343 488.0
DYD3_k127_1964274_1 Universal stress protein - - - 0.000000000000000000000000000000000000000706 158.0
DYD3_k127_196888_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 503.0
DYD3_k127_196970_0 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002205 243.0
DYD3_k127_196970_1 Glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000005297 224.0
DYD3_k127_1991886_0 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.000000000000000000000000000000000000000000000000000000009476 204.0
DYD3_k127_1991886_1 Stationary phase survival protein, YicC family, YicC_N and DUF1732 domain-containing - - - 0.000000000000000000000000000000000000000000000009697 177.0
DYD3_k127_1991886_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000006096 158.0
DYD3_k127_1991886_3 Domain of unknown function (DUF370) K09777 - - 0.0000000000000000000000000000102 125.0
DYD3_k127_1991886_4 L-allo-threonine aldolase activity K01620 - 4.1.2.48 0.0000000000000000000006102 95.0
DYD3_k127_1991886_5 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000005579 69.0
DYD3_k127_2003019_0 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009721 304.0
DYD3_k127_2003019_1 all-trans-retinol 13,14-reductase activity - - - 0.000000000000000000376 101.0
DYD3_k127_2003019_2 Domain of unknown function (DUF4410) - - - 0.000000000000001252 85.0
DYD3_k127_2012973_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 426.0
DYD3_k127_2012973_1 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000001162 193.0
DYD3_k127_2012973_2 Histidine kinase - - - 0.000000000000000000000000000000000002899 157.0
DYD3_k127_2012973_3 Binds directly to 16S ribosomal RNA K02968 - - 0.00002741 48.0
DYD3_k127_2022814_0 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000001446 127.0
DYD3_k127_2022814_1 amidohydrolase - - - 0.000000000000000000000000001178 128.0
DYD3_k127_2022814_2 NAD FAD-binding protein K06954 - - 0.000000001794 64.0
DYD3_k127_2033125_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 1.323e-203 654.0
DYD3_k127_2033557_0 COG4608 ABC-type oligopeptide transport system, ATPase component - - - 0.000000000000000000000000000000000000000000000000000000001014 204.0
DYD3_k127_2033557_1 PFAM Lytic K08309 - - 0.0000000000000000000000000000000000000001252 160.0
DYD3_k127_2050076_0 Squalene-hopene cyclase C-terminal domain K01852,K06045 - 4.2.1.129,5.4.99.17,5.4.99.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 308.0
DYD3_k127_2050076_1 Phosphorylase superfamily K01243 - 3.2.2.9 0.000000000002862 76.0
DYD3_k127_2066589_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005327 285.0
DYD3_k127_2066589_1 Glycosyl transferases group 1 K02844 - - 0.0000000000000000000000000000000000000000000000001357 190.0
DYD3_k127_2066589_2 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000004127 186.0
DYD3_k127_2066589_3 Bacterial transferase hexapeptide (six repeats) K00633 - 2.3.1.18 0.000000000000000000000004391 109.0
DYD3_k127_2066589_4 Glycosyl transferase 4-like domain - - - 0.0001211 45.0
DYD3_k127_2066589_5 PFAM Sulfotransferase domain - - - 0.000134 47.0
DYD3_k127_210800_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 GO:0008150,GO:0040007 6.3.5.6,6.3.5.7 1.887e-202 640.0
DYD3_k127_210800_1 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000000000000009511 190.0
DYD3_k127_2108085_0 Voltage gated chloride channel K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 319.0
DYD3_k127_2108085_1 Transglutaminase-like superfamily K22452 - 2.3.2.13 0.000000000000000000000000000000000000000749 158.0
DYD3_k127_212329_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000005666 190.0
DYD3_k127_212329_1 belongs to the carbohydrate kinase PfkB family K16370 - 2.7.1.11 0.0000000000000000000000000000002158 126.0
DYD3_k127_2129978_0 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004889 249.0
DYD3_k127_2129978_1 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000000000000000000000001707 140.0
DYD3_k127_2129978_2 Redox protein regulator of disulfide bond formation K07397 - - 0.00006681 45.0
DYD3_k127_2138406_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 7.017e-195 626.0
DYD3_k127_2138406_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000003854 258.0
DYD3_k127_2138406_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000001047 148.0
DYD3_k127_2138406_3 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000001158 93.0
DYD3_k127_2142010_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 488.0
DYD3_k127_2142010_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 346.0
DYD3_k127_2142010_2 PFAM cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 299.0
DYD3_k127_2151460_0 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 574.0
DYD3_k127_2153227_0 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 308.0
DYD3_k127_2153227_1 Auxiliary transport protein, membrane fusion protein (MFP) family protein K01993 - - 0.0000000000000000000000000586 120.0
DYD3_k127_2153227_2 ABC-2 family transporter protein K01992 - - 0.000000000002918 70.0
DYD3_k127_2176607_0 Glycosyltransferase like family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000003374 234.0
DYD3_k127_2176607_1 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000007845 210.0
DYD3_k127_2176607_2 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000001776 179.0
DYD3_k127_2183250_0 isochorismatase K06901 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 376.0
DYD3_k127_2183250_1 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001724 275.0
DYD3_k127_2183250_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002416 252.0
DYD3_k127_2232145_0 PFAM Nickel-dependent hydrogenase, large subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 467.0
DYD3_k127_2232145_1 Oxidoreductase NAD-binding domain K15765 - 1.18.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009032 329.0
DYD3_k127_2232145_2 PFAM tRNA synthetase, class II (G, H, P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 304.0
DYD3_k127_2232145_3 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003669 278.0
DYD3_k127_2232145_4 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006189 255.0
DYD3_k127_2232145_5 - - - - 0.00000000000000002031 83.0
DYD3_k127_2232145_6 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.00000000000000004045 84.0
DYD3_k127_2232145_7 - Catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - 0.000000000000004764 81.0
DYD3_k127_2232145_8 Tetratricopeptide repeat - - - 0.000000000000005352 84.0
DYD3_k127_2237002_0 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000001353 216.0
DYD3_k127_2237002_1 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000008123 169.0
DYD3_k127_2237002_2 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000003424 103.0
DYD3_k127_2237002_3 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000003019 96.0
DYD3_k127_2237002_4 Ribosomal protein L30p/L7e K02907 - - 0.0000000000000001787 80.0
DYD3_k127_2269987_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 2.603e-270 845.0
DYD3_k127_2269987_1 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000006691 165.0
DYD3_k127_2269987_2 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000004027 133.0
DYD3_k127_2269987_3 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000000000000000000003961 107.0
DYD3_k127_2269987_4 YtxH-like protein - - - 0.0000000000000000000009207 98.0
DYD3_k127_2301604_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.412e-285 897.0
DYD3_k127_2301604_1 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.0000000000000000000000000000000000000000000000000000002166 197.0
DYD3_k127_2306710_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 401.0
DYD3_k127_2306710_1 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000002688 196.0
DYD3_k127_2311730_0 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000001454 261.0
DYD3_k127_2311730_1 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.00000000000000000000000000000000000000000000000000000000002087 219.0
DYD3_k127_2311730_2 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000001329 104.0
DYD3_k127_2313353_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000003404 199.0
DYD3_k127_2313353_1 TRANSCRIPTIONal - - - 0.00004129 50.0
DYD3_k127_2313353_2 peptidoglycan binding K03642,K03749 - - 0.0001036 52.0
DYD3_k127_2315095_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 387.0
DYD3_k127_2315095_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000002065 228.0
DYD3_k127_2315095_2 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000001946 104.0
DYD3_k127_2315095_3 diguanylate cyclase - - - 0.000000000000000007759 98.0
DYD3_k127_2315095_4 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.00000000006606 64.0
DYD3_k127_2315095_5 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0031123,GO:0031404,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 0.000000002443 63.0
DYD3_k127_2315095_6 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000007736 54.0
DYD3_k127_2332027_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701 435.0
DYD3_k127_2332027_1 Radical SAM superfamily K02585 - - 0.0000000000001077 73.0
DYD3_k127_2371667_0 PFAM PfkB domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 456.0
DYD3_k127_2371667_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 391.0
DYD3_k127_2371667_2 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000002661 271.0
DYD3_k127_2371667_3 NUDIX domain K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000006447 171.0
DYD3_k127_2371667_4 thioesterase K07107 - - 0.00000000000000000000000000000000002015 139.0
DYD3_k127_2371667_5 Helix-turn-helix domain - - - 0.000000000000000000000000005948 123.0
DYD3_k127_2371667_6 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000009176 102.0
DYD3_k127_2371667_7 PFAM Tetratricopeptide repeat - - - 0.0000000001779 70.0
DYD3_k127_2401192_0 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 314.0
DYD3_k127_2401192_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006766 285.0
DYD3_k127_2401192_2 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000002033 253.0
DYD3_k127_2401192_3 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000007157 178.0
DYD3_k127_2401192_4 response regulator K07776 - - 0.0001907 45.0
DYD3_k127_2417701_0 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 480.0
DYD3_k127_2417701_1 lysine 2,3-aminomutase activity K01843,K19810 - 5.4.3.2 0.000000000000000000000000000002587 123.0
DYD3_k127_2417701_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000007631 80.0
DYD3_k127_2427356_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002776 287.0
DYD3_k127_2427356_1 Fe-S-cluster-containing hydrogenase K08358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009918 256.0
DYD3_k127_2427356_2 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000001785 130.0
DYD3_k127_2427356_3 heme-binding sites - - - 0.0000000000000000001073 100.0
DYD3_k127_2441958_0 nucleic acid binding OB-fold tRNA helicase-type K03698 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 314.0
DYD3_k127_2441958_1 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000001522 202.0
DYD3_k127_2441958_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 0.0000000000000000000000000000000000000000000000002417 179.0
DYD3_k127_2441958_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576 2.7.8.41 0.0000000000000000000000007485 116.0
DYD3_k127_2468968_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 551.0
DYD3_k127_2468968_1 Glycine zipper - - - 0.0002214 49.0
DYD3_k127_251095_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 579.0
DYD3_k127_251095_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 319.0
DYD3_k127_251095_2 Electron transfer flavoprotein K03521 - - 0.000000000000002088 76.0
DYD3_k127_251808_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1260.0
DYD3_k127_251808_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000000001869 189.0
DYD3_k127_2547202_0 Pyridoxal-phosphate dependent enzyme K01738,K12339 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 409.0
DYD3_k127_2547202_1 histone deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006269 403.0
DYD3_k127_2547202_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000001089 193.0
DYD3_k127_2547202_3 Flavodoxin-like fold - - - 0.00000000000000000000000000000000000000000000000000431 187.0
DYD3_k127_2547202_4 Domain of Unknown Function (DUF1540) - - - 0.00000000000000000000000000000006825 126.0
DYD3_k127_2551227_0 TIGRFAM molybdenum cofactor synthesis K03750,K07219 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 603.0
DYD3_k127_2551227_1 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.000000000000000000007266 93.0
DYD3_k127_2554265_0 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000006154 214.0
DYD3_k127_2554265_1 radical SAM domain protein - - - 0.000000000000000000002687 105.0
DYD3_k127_2554265_2 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000001856 73.0
DYD3_k127_2554265_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000003275 80.0
DYD3_k127_2554265_4 Protein of unknown function (DUF3024) - - - 0.00004984 51.0
DYD3_k127_2562108_0 Heterodisulfide reductase subunit A and related polyferredoxins K16886 - - 7.948e-274 861.0
DYD3_k127_2562108_1 FAD dependent oxidoreductase K16885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 535.0
DYD3_k127_2562108_2 4Fe-4S dicluster domain K16887 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007035 312.0
DYD3_k127_2562108_3 Ankyrin repeat - - - 0.00000000000008637 76.0
DYD3_k127_2567130_0 HD domain - - - 0.000000000000000000000000000000000000000000000000002684 198.0
DYD3_k127_2567130_1 SMART RNA-processing protein HAT helix repeating-containing protein - - - 0.00000003141 64.0
DYD3_k127_2581198_0 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 310.0
DYD3_k127_2581198_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003642 309.0
DYD3_k127_2581198_2 cheY-homologous receiver domain - - - 0.00000000000000000000000000000009488 128.0
DYD3_k127_2581198_3 Haloacid dehalogenase-like hydrolase K07025,K20866 - 3.1.3.10 0.0000000000000000000000009195 111.0
DYD3_k127_258562_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008114 363.0
DYD3_k127_258562_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000002451 123.0
DYD3_k127_258562_2 ATP synthesis coupled proton transport K02109,K18682 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000002625 104.0
DYD3_k127_2586944_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 3.754e-258 814.0
DYD3_k127_2586944_1 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 376.0
DYD3_k127_2586944_2 Endoribonuclease L-PSP K09022 GO:0003674,GO:0003824,GO:0016787,GO:0019239 3.5.99.10 0.000000000000000000000000000000000000000000001751 168.0
DYD3_k127_2586944_3 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000006656 78.0
DYD3_k127_2586944_4 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000001232 73.0
DYD3_k127_261388_0 PFAM Polysaccharide export protein - - - 4.118e-241 769.0
DYD3_k127_261388_1 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 465.0
DYD3_k127_261388_2 PFAM lipopolysaccharide biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000633 245.0
DYD3_k127_2618419_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003605 364.0
DYD3_k127_2618419_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000001299 226.0
DYD3_k127_2618419_2 ribose 5-phosphate isomerase B K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000003372 190.0
DYD3_k127_2618419_3 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000006481 128.0
DYD3_k127_2627726_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000002959 219.0
DYD3_k127_2627726_1 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000003433 218.0
DYD3_k127_2627726_2 Glycosyltransferase Family 4 - - - 0.0000003626 54.0
DYD3_k127_2670139_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 8.457e-218 690.0
DYD3_k127_2670139_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 465.0
DYD3_k127_2670139_2 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 412.0
DYD3_k127_2670139_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 344.0
DYD3_k127_2670139_4 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002097 280.0
DYD3_k127_2670139_5 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000004424 259.0
DYD3_k127_2670139_6 cytidylate kinase activity K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000003323 226.0
DYD3_k127_2670139_7 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000003023 163.0
DYD3_k127_2670139_8 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.000000000000000000000000000000001874 136.0
DYD3_k127_2670139_9 bacterial (prokaryotic) histone like domain K05788 - - 0.0000000000000000000000000000001063 125.0
DYD3_k127_2674992_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 446.0
DYD3_k127_2674992_1 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 319.0
DYD3_k127_2674992_2 Signal transduction histidine kinase, nitrogen specific, NtrB K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000001698 253.0
DYD3_k127_2674992_3 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000006005 143.0
DYD3_k127_2699276_0 Elongator protein 3, MiaB family, Radical SAM K02585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007625 245.0
DYD3_k127_2699276_1 ABC transporter K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000001046 246.0
DYD3_k127_2699276_2 ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.000267 45.0
DYD3_k127_2720559_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 477.0
DYD3_k127_2720559_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006554 357.0
DYD3_k127_2720559_2 PFAM peptidase S11, D-alanyl-D-alanine carboxypeptidase K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000009059 209.0
DYD3_k127_2735440_0 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 337.0
DYD3_k127_2735440_1 PFAM inositol monophosphatase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 306.0
DYD3_k127_2735440_2 Catalyzes the synthesis of activated sulfate K00860 - 2.7.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000007336 273.0
DYD3_k127_2735440_3 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000007183 158.0
DYD3_k127_280013_0 protein methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 542.0
DYD3_k127_280013_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000001803 208.0
DYD3_k127_280013_2 CytoplasmicMembrane, score 9.99 - - - 0.0000000000000000000000000000000363 145.0
DYD3_k127_280013_3 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000000000000007593 119.0
DYD3_k127_2822661_0 Homocysteine biosynthesis enzyme, sulfur-incorporation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 523.0
DYD3_k127_2822661_1 COG2853 Surface lipoprotein K04754 - - 0.0000132 49.0
DYD3_k127_2836280_0 Histone deacetylase domain K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 351.0
DYD3_k127_2836280_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.000000000000000000000005506 111.0
DYD3_k127_2836280_2 ABC transporter C-terminal domain K06158 - - 0.00000000000000000001704 96.0
DYD3_k127_2836280_3 phosphorelay signal transduction system K03413,K07315,K13924 - 2.1.1.80,3.1.1.61,3.1.3.3 0.000000000000000003112 91.0
DYD3_k127_2836280_4 Cupin 2, conserved barrel domain protein - - - 0.0000000000000001057 83.0
DYD3_k127_2836280_5 sulfur carrier activity - GO:0008150,GO:0009987,GO:0019725,GO:0042592,GO:0048878,GO:0055082,GO:0065007,GO:0065008 - 0.0000000000000005472 81.0
DYD3_k127_2836280_6 PFAM Acetoacetate decarboxylase - - - 0.0000000000001106 80.0
DYD3_k127_2836280_7 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.000000000001182 70.0
DYD3_k127_2836280_8 DsrE/DsrF-like family - - - 0.0000000002519 65.0
DYD3_k127_2836280_9 DsrE/DsrF-like family K07236 - - 0.0007338 47.0
DYD3_k127_2867760_0 PFAM Phosphomethylpyrimidine kinase type-1 K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000003363 237.0
DYD3_k127_2867760_1 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.33 0.000000000000000000000000000000000000000000000000001297 186.0
DYD3_k127_2867760_2 FtsZ-dependent cytokinesis - - - 0.0000000000000000000000000000000000005357 147.0
DYD3_k127_2867760_3 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000001286 95.0
DYD3_k127_2867760_4 Mor transcription activator - - - 0.00000000003381 66.0
DYD3_k127_2883812_0 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 322.0
DYD3_k127_2883812_1 Sulphur transport K07112 - - 0.000000000000000000000000000000000000000001428 169.0
DYD3_k127_2910485_0 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 363.0
DYD3_k127_2915115_0 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000002632 202.0
DYD3_k127_2915115_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000001092 103.0
DYD3_k127_2915115_2 Putative zinc- or iron-chelating domain - - - 0.00000000000000003609 85.0
DYD3_k127_2915115_3 COG1977 Molybdopterin converting factor, small subunit K03636 - - 0.000009652 51.0
DYD3_k127_2929405_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 433.0
DYD3_k127_2929405_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005605 317.0
DYD3_k127_294122_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 421.0
DYD3_k127_2976828_0 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 340.0
DYD3_k127_2976828_1 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000004512 234.0
DYD3_k127_2976828_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000002574 125.0
DYD3_k127_2986065_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378,K13380 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 6.21e-316 989.0
DYD3_k127_2986065_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000000000000000002512 136.0
DYD3_k127_2986329_0 cytochrome C peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 432.0
DYD3_k127_2986329_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 387.0
DYD3_k127_2986329_2 TIGRFAM thioredoxin K03672 - 1.8.1.8 0.00000000000000000000000000000000003057 140.0
DYD3_k127_2986329_3 COG COG0589 Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms - - - 0.0000000000000000000003342 108.0
DYD3_k127_2987500_0 ATPase associated with various cellular K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007654 418.0
DYD3_k127_2991052_0 TIGRFAM Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 569.0
DYD3_k127_3009698_0 Lysin motif K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005534 255.0
DYD3_k127_3009698_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000002294 196.0
DYD3_k127_3009698_2 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000002093 168.0
DYD3_k127_3009698_3 OstA-like protein K09774 - - 0.000000002731 64.0
DYD3_k127_3066478_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 2.428e-227 717.0
DYD3_k127_3066478_1 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008627 332.0
DYD3_k127_3066478_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000006426 261.0
DYD3_k127_3066478_3 twitching motility protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000003461 215.0
DYD3_k127_3066478_4 Protein of unknown function (DUF512) - - - 0.000009081 50.0
DYD3_k127_3105401_0 PFAM type II secretion system protein E K02283,K03609 - - 1.674e-203 641.0
DYD3_k127_3105401_1 Flp pilus polar localization response receiver ATPase TadZ, FlhG domain-containing K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 298.0
DYD3_k127_3105401_2 Type II secretion system (T2SS), protein F K12510 - - 0.00000000005759 69.0
DYD3_k127_3125732_0 TIGRFAM NADH-quinone oxidoreductase, chain G K00336 - 1.6.5.3 2.787e-204 661.0
DYD3_k127_3125732_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 436.0
DYD3_k127_3125732_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000383 218.0
DYD3_k127_3127755_0 Two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 552.0
DYD3_k127_3127755_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000006674 217.0
DYD3_k127_3127755_2 Collagen triple helix repeat (20 copies) - - - 0.00000000000000001447 91.0
DYD3_k127_3135915_0 Flavin containing amine oxidoreductase K00231,K01854 - 1.3.3.15,1.3.3.4,5.4.99.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 395.0
DYD3_k127_3135915_1 phospho-N-acetylmuramoyl-pentapeptide-transferase activity K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000008465 153.0
DYD3_k127_3185619_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 8.976e-219 682.0
DYD3_k127_3185619_1 Ribosomal protein L3 K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002383 261.0
DYD3_k127_3185619_2 Peptidase MA superfamily - - - 0.0000000000000000000000000000000000000000000000000000000002265 217.0
DYD3_k127_3185619_3 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000001523 177.0
DYD3_k127_3185619_4 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000611 119.0
DYD3_k127_3205590_0 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003499 335.0
DYD3_k127_3205590_1 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001426 285.0
DYD3_k127_3205590_2 Substrate binding domain of ABC-type glycine betaine transport system - - - 0.0000000000000000000000000000000002436 141.0
DYD3_k127_3205590_3 - - - - 0.00000000000000000009013 91.0
DYD3_k127_3247158_0 tRNA nucleotidyltransferase poly(A) polymerase K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 363.0
DYD3_k127_3247158_1 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007358 259.0
DYD3_k127_3247317_0 Chemotaxis sensory transducer K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 399.0
DYD3_k127_3247317_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000003374 234.0
DYD3_k127_3247317_2 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000005024 218.0
DYD3_k127_3247317_3 PBS lyase HEAT-like repeat - - - 0.000000000000000000000000000000000007636 156.0
DYD3_k127_3247317_4 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000004243 106.0
DYD3_k127_3259198_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006118 267.0
DYD3_k127_3259198_1 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008801 257.0
DYD3_k127_3259198_2 PFAM glycosyl transferase, family 9 K02849 - - 0.0000000000000000000000000000000000000000000000000000000001371 214.0
DYD3_k127_3259198_3 Belongs to the UPF0434 family K09791 - - 0.000000000000000002917 86.0
DYD3_k127_3265219_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002151 276.0
DYD3_k127_3265219_1 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000001587 222.0
DYD3_k127_3265219_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000003767 198.0
DYD3_k127_3265219_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000118 185.0
DYD3_k127_3265219_4 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000001247 135.0
DYD3_k127_3265219_5 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000006571 117.0
DYD3_k127_3265219_6 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000007291 110.0
DYD3_k127_3265219_7 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.000000000000000009795 89.0
DYD3_k127_3265219_8 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000003942 60.0
DYD3_k127_3265219_9 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00001336 48.0
DYD3_k127_3275014_0 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000001355 271.0
DYD3_k127_3275014_1 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000006244 232.0
DYD3_k127_3284000_0 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 425.0
DYD3_k127_3284000_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 345.0
DYD3_k127_3284000_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000001161 143.0
DYD3_k127_3285526_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703,K16792 - 4.2.1.114,4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006283 451.0
DYD3_k127_3285526_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000001086 221.0
DYD3_k127_3285526_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000001096 196.0
DYD3_k127_3296960_0 Cache domain - - - 4.262e-251 788.0
DYD3_k127_3296960_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000001471 212.0
DYD3_k127_3296960_2 succinate dehydrogenase K00241 - - 0.0000000000000000000000000000000000000000000116 169.0
DYD3_k127_3296960_3 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000008239 132.0
DYD3_k127_3315619_0 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000142 248.0
DYD3_k127_3315619_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.0000000000000008793 80.0
DYD3_k127_3315619_2 Tetratricopeptide repeat K07114 - - 0.0000000000008981 78.0
DYD3_k127_3315619_3 Von Willebrand factor type A domain K07114 - - 0.000000002589 62.0
DYD3_k127_3316039_0 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001847 288.0
DYD3_k127_3316039_1 ADP-ribosylation factor family K06883 - - 0.000000000000000000000001739 106.0
DYD3_k127_3316039_2 Protein of unknown function (DUF1722) - - - 0.000008203 51.0
DYD3_k127_3337072_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 GO:0003674,GO:0003824,GO:0004749,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016772,GO:0016778,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009189 424.0
DYD3_k127_3337072_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.00000000000000000000000000000000000001236 150.0
DYD3_k127_3337072_2 Could be involved in septation K06412 - - 0.000000000000000000000000001783 117.0
DYD3_k127_3337072_3 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000004549 95.0
DYD3_k127_3353807_0 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000004543 241.0
DYD3_k127_3353807_1 Chromate K07240 - - 0.000000000000000000000000000006561 126.0
DYD3_k127_3353807_2 Chromate K07240 - - 0.000000000000000000000000001176 125.0
DYD3_k127_3382043_0 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 320.0
DYD3_k127_3382043_1 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000006183 152.0
DYD3_k127_3382043_2 TIGRFAM TonB family K03832 - - 0.00000001214 63.0
DYD3_k127_3384632_0 pyridine nucleotide-disulphide oxidoreductase dimerisation K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 440.0
DYD3_k127_341406_0 TIGRFAM Flp pilus assembly protein CpaB K02279 - - 0.00000000000000000000000000000000000000000000000000008 194.0
DYD3_k127_341406_1 TadE-like protein - - - 0.0003359 49.0
DYD3_k127_3436371_0 FtsZ-dependent cytokinesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001898 278.0
DYD3_k127_3436371_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000003212 261.0
DYD3_k127_3436371_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00005736 46.0
DYD3_k127_3436371_3 Formate nitrite transporter - - - 0.0005401 43.0
DYD3_k127_3440425_0 COG0501 Zn-dependent protease with chaperone function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 341.0
DYD3_k127_3440425_1 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009427 247.0
DYD3_k127_3440425_2 - - - - 0.0000000000000000000000000000000000000000000000000000000003453 210.0
DYD3_k127_3474504_0 Phosphomethylpyrimidine kinase K16370 - 2.7.1.11 0.00000000000000000000000000000000000000000000000000007498 191.0
DYD3_k127_3474504_1 TrkA-C domain - - - 0.00000000000000000000000000000000000000001511 161.0
DYD3_k127_3474504_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000006654 66.0
DYD3_k127_3474504_3 Toxic anion resistance protein (TelA) - - - 0.00003241 48.0
DYD3_k127_3474504_4 Lipopolysaccharide assembly protein A domain K08992 - - 0.0003497 47.0
DYD3_k127_3497645_0 Domain of unknown function (DUF3463) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 316.0
DYD3_k127_3497645_1 intermembrane phospholipid transfer K07323 - - 0.00000000000000000000000000000000000000000000000000006624 194.0
DYD3_k127_3506646_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 606.0
DYD3_k127_3506646_1 Pfam:Arch_ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 296.0
DYD3_k127_3506646_2 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000003222 198.0
DYD3_k127_3506646_3 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000009597 147.0
DYD3_k127_3506646_4 diguanylate cyclase - - - 0.00002246 53.0
DYD3_k127_3506646_5 regulator, PATAN and FRGAF domain-containing - - - 0.000134 44.0
DYD3_k127_3524182_0 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 510.0
DYD3_k127_3524182_1 SMART phosphoesterase PHP domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000884 292.0
DYD3_k127_3524182_2 Vacuole effluxer Atg22 like K06902 - - 0.000000000002232 69.0
DYD3_k127_3570490_0 Domain in cystathionine beta-synthase and other proteins. K07182 - - 1.143e-204 656.0
DYD3_k127_3570490_1 glycolate transport K14393 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004505 396.0
DYD3_k127_3570490_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000001558 135.0
DYD3_k127_3570490_3 Protein of unknown function, DUF485 - - - 0.000000000000000000000000000007299 121.0
DYD3_k127_3570490_4 Sigma-54 interaction domain K07714 - - 0.000000000000000000000001322 105.0
DYD3_k127_3584692_0 PFAM ABC transporter related K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005597 311.0
DYD3_k127_3584692_1 ABC-2 type transporter K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000001215 241.0
DYD3_k127_3588731_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 4.611e-199 626.0
DYD3_k127_3588731_1 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000000005392 188.0
DYD3_k127_3588731_2 PFAM Rh family protein ammonium transporter K03320 - - 0.0000000009374 59.0
DYD3_k127_3600490_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K02481,K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 488.0
DYD3_k127_3600490_1 histidine kinase, HAMP K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 436.0
DYD3_k127_3638416_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001041 287.0
DYD3_k127_3638416_1 ResB-like family - - - 0.000000000000000000000000000000000000000493 165.0
DYD3_k127_3638416_2 PFAM response regulator receiver - - - 0.00000000000005592 73.0
DYD3_k127_3638416_3 His Kinase A (phosphoacceptor) domain - - - 0.0001172 44.0
DYD3_k127_3646860_0 FAD binding domain K00394 - 1.8.99.2 2.061e-302 938.0
DYD3_k127_3646860_1 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008003 460.0
DYD3_k127_3646860_2 reductase, beta subunit K00395 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000000000000001918 217.0
DYD3_k127_3646860_3 sulfate assimilation K00958 - 2.7.7.4 0.00000000000000000000000000000000000000000000001739 173.0
DYD3_k127_3668488_0 type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 456.0
DYD3_k127_3668488_1 Thrombospondin type 3 repeat - - - 0.0001112 53.0
DYD3_k127_36764_0 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 513.0
DYD3_k127_36764_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 308.0
DYD3_k127_36764_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000004671 254.0
DYD3_k127_36764_3 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000007638 210.0
DYD3_k127_36764_4 Regulatory protein, FmdB family - - - 0.0000000000000167 75.0
DYD3_k127_368894_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 391.0
DYD3_k127_368894_1 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004159 361.0
DYD3_k127_368894_2 Transcriptional regulator K11921,K19338 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000191 261.0
DYD3_k127_368894_3 Transcriptional regulator K13643 - - 0.0000000000000000000000000000000000000002022 154.0
DYD3_k127_368894_4 Transcriptional regulator K11921,K19338 - - 0.0000000000009803 67.0
DYD3_k127_3733879_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002957 355.0
DYD3_k127_3733879_1 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003649 258.0
DYD3_k127_3733879_2 PFAM CheW domain protein K03408 - - 0.00000000000000000000000000000000000000005534 156.0
DYD3_k127_3733879_3 TIGRFAM phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 - - 0.0000000000000000000000000000000007568 152.0
DYD3_k127_3743086_0 BadF BadG BcrA BcrD - - - 2.177e-283 895.0
DYD3_k127_3743086_1 Hydrogenase expression formation protein (HypE) K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 323.0
DYD3_k127_3743381_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1093.0
DYD3_k127_3743381_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000018 260.0
DYD3_k127_3743381_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000002087 238.0
DYD3_k127_3743381_3 With S4 and S5 plays an important role in translational accuracy K02950 - - 0.000000000000000000000000000000000001971 138.0
DYD3_k127_3753285_0 Methylenetetrahydrofolate reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008747 371.0
DYD3_k127_3753285_1 gtp cyclohydrolase i K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001971 251.0
DYD3_k127_3753285_2 electron transfer activity K03615 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002327 247.0
DYD3_k127_3753285_3 PFAM 5-formyltetrahydrofolate cyclo-ligase K01934 - 6.3.3.2 0.0000000000000000000000000004053 118.0
DYD3_k127_3753285_4 helix_turn_helix, arabinose operon control protein K07506 - - 0.00007601 50.0
DYD3_k127_3753285_5 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0002223 43.0
DYD3_k127_3759517_0 Aconitase family (aconitate hydratase) K01681 - 4.2.1.3 3.255e-287 894.0
DYD3_k127_3759517_1 Sodium hydrogen exchanger K11105 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 398.0
DYD3_k127_3759517_2 Sodium hydrogen exchanger K11105 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 335.0
DYD3_k127_3769900_0 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 519.0
DYD3_k127_3769900_1 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000527 288.0
DYD3_k127_3769900_2 inositol monophosphate 1-phosphatase activity K01082,K01092 - 3.1.3.25,3.1.3.7 0.00000000000000000000000000000000000000000000001101 181.0
DYD3_k127_3769900_3 peptidyl-tyrosine sulfation - - - 0.0000001599 55.0
DYD3_k127_3769900_4 His Kinase A (phosphoacceptor) domain - - - 0.0000003603 59.0
DYD3_k127_3789057_0 Phosphohydrolase-associated domain K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 430.0
DYD3_k127_3789057_1 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000005428 262.0
DYD3_k127_3789057_2 Domain of unknown function (DUF4388) - - - 0.000002593 55.0
DYD3_k127_3834484_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 558.0
DYD3_k127_3834484_1 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 297.0
DYD3_k127_3834484_2 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.00000000000000000000000000000000000004324 154.0
DYD3_k127_3873576_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000996 306.0
DYD3_k127_3873576_1 Belongs to the D-alanine--D-alanine ligase family K01921 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008716,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000001165 259.0
DYD3_k127_3873576_2 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000004296 225.0
DYD3_k127_3873576_3 Cell division protein FtsQ K03589 - - 0.00000000004822 71.0
DYD3_k127_3877434_0 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 465.0
DYD3_k127_3877434_1 cheY-homologous receiver domain K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 301.0
DYD3_k127_3877434_2 Putative porin - - - 0.000000000000000000000000000000000000000000000000000000002305 218.0
DYD3_k127_3877434_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07636 - 2.7.13.3 0.000000000000000000000000000006323 126.0
DYD3_k127_3899340_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 420.0
DYD3_k127_3899340_1 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000006199 207.0
DYD3_k127_3899340_2 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000000000000000000000000000911 168.0
DYD3_k127_3899340_3 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000004829 151.0
DYD3_k127_3899340_4 Fibronectin-binding protein - - - 0.00000000000000000000000000000000003269 152.0
DYD3_k127_3899340_5 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000009749 123.0
DYD3_k127_3934857_0 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 478.0
DYD3_k127_3934857_1 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 369.0
DYD3_k127_3934857_2 Histidine kinase - - - 0.000000000000000000000000000000002928 141.0
DYD3_k127_3940847_0 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007963 410.0
DYD3_k127_3940847_1 alginic acid biosynthetic process - - - 0.000000000000000000000000000000000000000005288 165.0
DYD3_k127_3940847_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000001318 151.0
DYD3_k127_3940847_3 alginic acid biosynthetic process - - - 0.000000000000000000000000000000001119 143.0
DYD3_k127_3940847_4 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.00000000000000000000004695 102.0
DYD3_k127_3947849_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.0 1176.0
DYD3_k127_3947849_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000728 361.0
DYD3_k127_3947849_2 monooxygenase activity - - - 0.00000000000000000000000000000000001071 142.0
DYD3_k127_3947849_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000001423 131.0
DYD3_k127_3947849_4 Transcriptional regulator, MerR family K13640 GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000001298 124.0
DYD3_k127_3947849_5 Bacterial regulatory proteins, tetR family K16137 - - 0.00000000000000000000000001099 112.0
DYD3_k127_3952656_0 Actin K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 492.0
DYD3_k127_3952656_1 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 475.0
DYD3_k127_3952656_2 rod shape-determining protein MreC K03570 - - 0.00000000000000000000000000000000000000000001048 172.0
DYD3_k127_3952656_3 RDD family - - - 0.0000000000000000000000005853 111.0
DYD3_k127_3952656_4 Rod shape-determining protein (MreD) K03571 - - 0.0001659 51.0
DYD3_k127_3961375_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 2.92e-314 986.0
DYD3_k127_3961375_1 ABC1 family K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007497 408.0
DYD3_k127_3961375_2 ABC transporter transmembrane region K06147 - - 0.0000000000000000000000000000000000000000001896 162.0
DYD3_k127_3961375_3 Psort location CytoplasmicMembrane, score - - - 0.000000000000002984 83.0
DYD3_k127_3961375_4 granule-associated protein - - - 0.0000000007021 64.0
DYD3_k127_3973383_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003542 466.0
DYD3_k127_3973383_1 Polyprenyl synthetase K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 355.0
DYD3_k127_3973383_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000006095 139.0
DYD3_k127_3973383_3 exodeoxyribonuclease VII activity K03602 - 3.1.11.6 0.00000000000005958 74.0
DYD3_k127_4001015_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 4.835e-209 655.0
DYD3_k127_4001015_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005066 536.0
DYD3_k127_4001015_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000678 266.0
DYD3_k127_4001015_3 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000008964 227.0
DYD3_k127_4001015_4 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000002282 203.0
DYD3_k127_401956_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01582,K01585 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008923,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564 4.1.1.18,4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 436.0
DYD3_k127_401956_1 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.00000000000000000000000117 104.0
DYD3_k127_401956_2 Signal peptidase I K03100 - 3.4.21.89 0.00000000009947 63.0
DYD3_k127_4025463_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 8.976e-203 637.0
DYD3_k127_4025463_1 PFAM fumarate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 454.0
DYD3_k127_4031838_0 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 511.0
DYD3_k127_4031838_1 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 407.0
DYD3_k127_4031838_2 ACT domain K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000003887 234.0
DYD3_k127_4031838_3 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000567 62.0
DYD3_k127_4034008_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972,K10754 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 389.0
DYD3_k127_4034008_1 histidine kinase - - - 0.000000000000000000000000007401 117.0
DYD3_k127_4072130_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1115.0
DYD3_k127_4072130_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000005797 226.0
DYD3_k127_4110497_0 Sulphur transport K07112 - - 0.0000000000000000000001362 101.0
DYD3_k127_4110497_1 amine dehydrogenase activity - - - 0.000002071 59.0
DYD3_k127_4118986_0 Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000691 240.0
DYD3_k127_4118986_1 Belongs to the HesB IscA family K15724 - - 0.0000002974 61.0
DYD3_k127_4127080_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000006494 188.0
DYD3_k127_4127080_1 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000001008 122.0
DYD3_k127_4187684_0 - - - - 0.000000000000000000000001077 117.0
DYD3_k127_4187684_1 D-alanyl-D-alanine carboxypeptidase K17733 - - 0.000000000000002375 81.0
DYD3_k127_4193116_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 391.0
DYD3_k127_4193116_1 TIGRFAM riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002708 271.0
DYD3_k127_4201799_0 PFAM cytochrome c biogenesis protein, transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000000000000000000002751 228.0
DYD3_k127_4201799_1 COG2143 Thioredoxin-related protein - - - 0.0000000000000307 76.0
DYD3_k127_4201799_2 - - - - 0.000000000000578 75.0
DYD3_k127_4201799_3 Heavy-metal-associated domain K07213 - - 0.0000000000271 66.0
DYD3_k127_4208804_0 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008743,GO:0009066,GO:0009987,GO:0016043,GO:0016491,GO:0016597,GO:0016614,GO:0016616,GO:0019752,GO:0022607,GO:0031406,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051260,GO:0051262,GO:0051287,GO:0051289,GO:0055114,GO:0065003,GO:0070401,GO:0070403,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901605 1.1.1.103 0.00000000000000000000000000000000000000000000000000000000001423 213.0
DYD3_k127_4208804_1 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000001163 170.0
DYD3_k127_4208804_2 ferroxidase activity K03594 GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0097577,GO:0098771 1.16.3.1 0.000000000000000000000000000000000000000001016 163.0
DYD3_k127_422150_0 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001013 275.0
DYD3_k127_422150_1 Flavodoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001305 253.0
DYD3_k127_422150_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000567 169.0
DYD3_k127_422150_3 Chemotaxis phosphatase CheX - - - 0.000000002987 63.0
DYD3_k127_4237129_0 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 435.0
DYD3_k127_4237129_1 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004429 392.0
DYD3_k127_4237129_2 DNA polymerase alpha chain like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000211 273.0
DYD3_k127_4237129_3 PilZ domain - - - 0.0000000000000000000000005813 108.0
DYD3_k127_4237129_4 HupF/HypC family K04653 - - 0.000000000000000009096 85.0
DYD3_k127_4237129_5 PFAM UvrB UvrC protein K08999,K19405,K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 2.7.14.1 0.00000002656 66.0
DYD3_k127_4260573_0 Amino acid permease - - - 4.853e-243 769.0
DYD3_k127_4260573_1 SMART Nucleotide binding protein, PINc K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 557.0
DYD3_k127_4260573_2 Mu-like prophage protein Gp16 - - - 0.0000008961 56.0
DYD3_k127_4271756_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 360.0
DYD3_k127_4271756_1 Alternative locus ID - - - 0.000000000002135 76.0
DYD3_k127_4298737_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 3.368e-275 857.0
DYD3_k127_4298737_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008263 274.0
DYD3_k127_4298737_2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000005715 244.0
DYD3_k127_4298737_3 Belongs to the purine pyrimidine phosphoribosyltransferase family. PyrR subfamily K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000001368 232.0
DYD3_k127_4311574_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000006033 173.0
DYD3_k127_431702_0 response to heat K03696 - - 3.132e-302 947.0
DYD3_k127_431702_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012,K16180 - 2.8.1.6,5.4.99.58 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 321.0
DYD3_k127_431702_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009763 299.0
DYD3_k127_431702_3 NUDIX domain K03574 - 3.6.1.55 0.0000000000000000000002259 98.0
DYD3_k127_431702_4 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000441 94.0
DYD3_k127_4327396_0 ATPases associated with a variety of cellular activities K02006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 301.0
DYD3_k127_4327396_1 Cobalt uptake substrate-specific transmembrane region K02007 - - 0.000000000000000000000000000000007424 137.0
DYD3_k127_4327396_2 PFAM Membrane protein of K08972 - - 0.000000000006282 67.0
DYD3_k127_4327396_3 Cobalt ABC transporter K02008 - - 0.0000000004075 70.0
DYD3_k127_4327396_4 Predicted RNA-binding protein - - - 0.00000005359 57.0
DYD3_k127_4342888_0 Cytochrome b/b6/petB K00412,K03888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 433.0
DYD3_k127_4342888_1 Pyruvate ferredoxin oxidoreductase and related K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 409.0
DYD3_k127_4342888_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 360.0
DYD3_k127_4342888_3 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.0000000000000000000000000000000000000000003506 167.0
DYD3_k127_4342888_4 4Fe-4S binding domain - - - 0.000000001086 63.0
DYD3_k127_4342888_5 Belongs to the GbsR family - - - 0.0008503 49.0
DYD3_k127_4349783_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006075 505.0
DYD3_k127_4349783_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000414 261.0
DYD3_k127_4349783_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000005452 210.0
DYD3_k127_4349783_3 RNA 2'-O ribose methyltransferase substrate binding K03437 - - 0.000000000000000000000000002864 115.0
DYD3_k127_4349783_4 Rhodanese Homology Domain - - - 0.00000000000000000002054 96.0
DYD3_k127_4401522_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 359.0
DYD3_k127_4401522_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000003346 248.0
DYD3_k127_4401522_2 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002166 244.0
DYD3_k127_4415882_0 Belongs to the RtcB family K14415 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 6.5.1.3 1.808e-205 649.0
DYD3_k127_4415882_1 GNAT family acetyltransferase - - - 0.00000000004101 66.0
DYD3_k127_4457931_0 Heavy-metal-associated domain K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 424.0
DYD3_k127_4457931_1 COG1233 Phytoene dehydrogenase and related - - - 0.00000000000000000000000000000000000000000000000000000000001111 225.0
DYD3_k127_4457931_2 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000006112 167.0
DYD3_k127_4457931_3 histidine kinase - - - 0.0000000000000000000002725 100.0
DYD3_k127_4457931_4 Cytochrome oxidase maturation protein - - - 0.00000000001147 67.0
DYD3_k127_4457931_5 YtkA-like - - - 0.000000002054 65.0
DYD3_k127_4460886_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 396.0
DYD3_k127_4460886_1 CBS domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 316.0
DYD3_k127_4460886_2 Cation efflux family - - - 0.000000000002365 68.0
DYD3_k127_448697_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000001806 230.0
DYD3_k127_448697_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000002502 213.0
DYD3_k127_448697_2 FAD binding domain K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000004971 202.0
DYD3_k127_448697_3 Putative TM nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000005092 200.0
DYD3_k127_448697_4 lyase activity - - - 0.00000000000000000001 99.0
DYD3_k127_448697_5 HEAT repeats - - - 0.000000000000000005548 97.0
DYD3_k127_4502812_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 291.0
DYD3_k127_4502812_1 PFAM flavin reductase domain protein FMN-binding - - - 0.00000000000000000000000000000000000000000000001479 177.0
DYD3_k127_4502812_2 FMN binding K03809 - 1.6.5.2 0.0000000000000000000000000000449 117.0
DYD3_k127_4508464_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 534.0
DYD3_k127_4508464_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005976 330.0
DYD3_k127_4508464_2 DNA methylase K00590 - 2.1.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000273 295.0
DYD3_k127_4508464_3 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.00000000000000000000000000000001095 139.0
DYD3_k127_4537571_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 413.0
DYD3_k127_4537571_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 381.0
DYD3_k127_4537571_2 HrcA protein C terminal domain K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 327.0
DYD3_k127_4537571_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000271 60.0
DYD3_k127_4537571_4 Pfam Binding-protein-dependent transport systems inner membrane component K02054,K11071 - - 0.0006972 44.0
DYD3_k127_4547392_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 366.0
DYD3_k127_4547392_1 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000001554 185.0
DYD3_k127_4547392_2 PFAM glycosyl transferase family 2 - - - 0.000000000000000005395 88.0
DYD3_k127_455675_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 317.0
DYD3_k127_455675_1 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000002599 155.0
DYD3_k127_455675_2 belongs to the thioredoxin family K14949,K20543 - 2.7.11.1 0.000000000000000009271 97.0
DYD3_k127_455675_3 Roadblock/LC7 domain - - - 0.00000000000000009178 84.0
DYD3_k127_455675_4 Tetratricopeptide repeat - - - 0.00008369 49.0
DYD3_k127_4562449_0 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000001292 207.0
DYD3_k127_4562449_1 Protein of unknown function (DUF3047) - - - 0.00000000000000000000000000000000000000009616 158.0
DYD3_k127_4562449_2 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.00000000000000000000000000008382 118.0
DYD3_k127_4562449_3 Protein of unknown function (DUF3047) - - - 0.00000000002421 65.0
DYD3_k127_4572563_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008764,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 439.0
DYD3_k127_4572563_1 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003723 336.0
DYD3_k127_4572563_2 UDP-N-acetylmuramate-L-alanine ligase activity K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003583 280.0
DYD3_k127_4572563_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000288 287.0
DYD3_k127_4589089_0 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 330.0
DYD3_k127_4589089_1 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008855 258.0
DYD3_k127_4589089_2 Histidine kinase A domain protein - - - 0.0000000000000000000000000000002018 134.0
DYD3_k127_4589419_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 579.0
DYD3_k127_4589419_1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.00000000000000000000001098 105.0
DYD3_k127_4606762_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009348 504.0
DYD3_k127_4606762_1 PFAM permease YjgP YjgQ family protein K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001186 257.0
DYD3_k127_4633143_0 Molybdopterin oxidoreductase Fe4S4 domain K00123,K22341 - 1.17.1.11,1.17.1.9 2.697e-230 730.0
DYD3_k127_4640539_0 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 541.0
DYD3_k127_4640539_1 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 403.0
DYD3_k127_4640539_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07305,K12267 - 1.8.4.11,1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000002859 260.0
DYD3_k127_4648919_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 2.417e-214 676.0
DYD3_k127_4648919_1 glycolate transport K14393 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 407.0
DYD3_k127_4648919_2 phosphate-selective porin O and P - - - 0.0000000009595 71.0
DYD3_k127_469423_0 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001161 261.0
DYD3_k127_469423_1 response to stress - - - 0.0000005297 56.0
DYD3_k127_4729647_0 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 515.0
DYD3_k127_4729647_1 Ribosomal protein L11 methyltransferase (PrmA) K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000002075 261.0
DYD3_k127_4729647_2 PFAM Thioredoxin K03671 - - 0.00000000000000002528 89.0
DYD3_k127_4729647_3 low molecular weight K03741 - 1.20.4.1 0.00000000000394 66.0
DYD3_k127_4772459_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050497,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 329.0
DYD3_k127_4772459_1 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005548 295.0
DYD3_k127_4772459_2 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000000000000000000000000004593 243.0
DYD3_k127_4772459_3 PFAM response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000000000000000000000000123 152.0
DYD3_k127_4772459_4 5'-nucleotidase - - - 0.000000000000000000000000000000000000003076 164.0
DYD3_k127_4821039_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K01256,K02563,K02652,K08776,K12132 - 2.4.1.227,2.7.11.1,3.4.11.2 0.0000000000000000000000000000000000000000000000000000000001967 219.0
DYD3_k127_4821039_1 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000002156 126.0
DYD3_k127_4824255_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 343.0
DYD3_k127_4824255_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000001358 229.0
DYD3_k127_4824255_2 diguanylate cyclase - - - 0.000000000000000000000000000000000000000001143 181.0
DYD3_k127_4859862_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000007575 188.0
DYD3_k127_4859862_1 PFAM O-Antigen - - - 0.00000000000003852 86.0
DYD3_k127_4869168_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 455.0
DYD3_k127_4869168_1 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 321.0
DYD3_k127_4869168_2 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000107 274.0
DYD3_k127_4869168_3 - - - - 0.0000000000000000000000000001396 124.0
DYD3_k127_4869168_4 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding K11686,K13640,K18997 - - 0.000000000000000004928 85.0
DYD3_k127_4869168_5 Fimbrial assembly protein (PilN) K02663 - - 0.00002632 53.0
DYD3_k127_4872366_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 526.0
DYD3_k127_4872366_1 response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005619 292.0
DYD3_k127_4881589_0 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.00000000000000000000000001174 121.0
DYD3_k127_4881589_1 transcriptional regulator K09017 - - 0.0000000000000007239 86.0
DYD3_k127_4881589_2 PFAM UvrB UvrC protein K08999,K19405,K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 2.7.14.1 0.0000955 55.0
DYD3_k127_4889835_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 342.0
DYD3_k127_4889835_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006322 331.0
DYD3_k127_4889835_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 304.0
DYD3_k127_4889835_3 Response regulator receiver domain K03413 - - 0.00000000000000000000000000000000000000000000000002082 181.0
DYD3_k127_4889835_4 Domain of unknown function (DUF3786) - - - 0.000000009545 59.0
DYD3_k127_4892115_0 Heavy metal transport detoxification protein K17686 - 3.6.3.54 3.779e-235 752.0
DYD3_k127_4892115_1 Peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008164 367.0
DYD3_k127_4892115_2 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000002987 169.0
DYD3_k127_4892115_3 Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000000003157 173.0
DYD3_k127_4892115_4 ResB-like family - - - 0.00000000000000000000003311 113.0
DYD3_k127_4892115_5 Phosphate-starvation-inducible E - - - 0.000000000447 66.0
DYD3_k127_4906687_0 Predicted permease - - - 0.00000000000000000000000000001099 125.0
DYD3_k127_4906687_1 Protein of unknown function (DUF1573) - - - 0.0000000000000004976 89.0
DYD3_k127_4906687_2 PBS lyase HEAT-like repeat - - - 0.000000000009782 77.0
DYD3_k127_4906687_3 TPR Domain containing protein - - - 0.00000009843 64.0
DYD3_k127_4906687_4 Tetratricopeptide repeat - - - 0.000001603 61.0
DYD3_k127_4929130_0 Phosphoenolpyruvate carboxykinase K01610 - 4.1.1.49 2.551e-262 817.0
DYD3_k127_4929130_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007743 571.0
DYD3_k127_4929130_2 CorA-like Mg2+ transporter protein K16074 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0022883,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046583,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000082 361.0
DYD3_k127_4929429_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007805 282.0
DYD3_k127_4929429_1 peroxiredoxin activity K01607 - 4.1.1.44 0.00000462 48.0
DYD3_k127_4931027_0 Conserved carboxylase domain K01958 - 6.4.1.1 0.0 1084.0
DYD3_k127_4931027_1 acetyl-CoA carboxylase, biotin carboxylase K01961,K01965 - 6.3.4.14,6.4.1.2,6.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 294.0
DYD3_k127_4931027_2 COG1404 Subtilisin-like serine proteases K20754 - 3.4.21.111 0.000000000000000000000000000000000000000000000000000000000000000000000000002253 263.0
DYD3_k127_4967414_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 421.0
DYD3_k127_4967414_1 Radical SAM superfamily K04070 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 375.0
DYD3_k127_4967414_2 Belongs to the acetokinase family K00929 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0044237,GO:0044424,GO:0044464,GO:0047761 2.7.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007998 340.0
DYD3_k127_4967414_3 phosphate butyryltransferase K00634 - 2.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000717 236.0
DYD3_k127_4967414_4 Fibronectin type 3 domain - - - 0.0000000000000000000001511 107.0
DYD3_k127_4967414_5 Mo-molybdopterin cofactor metabolic process K03753,K07588 - - 0.000000246 59.0
DYD3_k127_4976282_0 PFAM sigma-54 factor interaction domain-containing protein K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006676 391.0
DYD3_k127_4976282_1 His Kinase A (phosphoacceptor) domain K02668,K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000001291 194.0
DYD3_k127_4976282_2 HD domain - - - 0.00000000000000000000000000000000000000000000003454 183.0
DYD3_k127_4976282_3 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000001202 138.0
DYD3_k127_4976282_4 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000003346 121.0
DYD3_k127_4978100_0 Flotillin K07192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005645 266.0
DYD3_k127_4978100_1 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000003989 230.0
DYD3_k127_4978100_2 - - - - 0.000000000000000000000000000000000002473 141.0
DYD3_k127_4978100_3 Universal stress protein family - - - 0.000000000000001727 83.0
DYD3_k127_4978100_4 sequence-specific DNA binding - - - 0.0000000002118 67.0
DYD3_k127_4978100_5 His Kinase A (phosphoacceptor) domain - - - 0.00007279 50.0
DYD3_k127_5020011_0 symporter activity K03307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 328.0
DYD3_k127_5020011_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000002937 188.0
DYD3_k127_5020011_2 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.0000000000002814 71.0
DYD3_k127_5022277_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002118 530.0
DYD3_k127_5022277_1 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000000003097 163.0
DYD3_k127_5030913_0 Receptor family ligand binding region K01999 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0008150,GO:0015711,GO:0015803,GO:0015804,GO:0015818,GO:0015820,GO:0015829,GO:0015849,GO:0016597,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0070728,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000000000000000000000000000000000000005032 238.0
DYD3_k127_5030913_1 - - - - 0.00000000000000000000000000000000000000000000000000003891 197.0
DYD3_k127_5030913_2 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000001108 182.0
DYD3_k127_5030913_3 - - - - 0.000000000000000000000000107 107.0
DYD3_k127_5034881_0 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009368 264.0
DYD3_k127_5034881_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000000000001883 190.0
DYD3_k127_5034881_2 TRCF K03723 - - 0.0000000000000000000000000000001917 136.0
DYD3_k127_5034881_4 overlaps another CDS with the same product name - - - 0.0004737 49.0
DYD3_k127_5044969_0 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001031 273.0
DYD3_k127_5044969_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.00000000000000000000000000004351 124.0
DYD3_k127_5044969_2 - - - - 0.00000000000000004001 92.0
DYD3_k127_5047716_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 616.0
DYD3_k127_5047716_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000002948 227.0
DYD3_k127_5047716_2 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000002838 93.0
DYD3_k127_505142_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000403 574.0
DYD3_k127_505142_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000001717 200.0
DYD3_k127_505142_2 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000006312 57.0
DYD3_k127_5086393_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000003578 270.0
DYD3_k127_5086393_1 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000000000000000000000000004435 177.0
DYD3_k127_5086393_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.00000000000000000000000000000000000007065 143.0
DYD3_k127_5089077_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 385.0
DYD3_k127_5089077_1 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000003461 139.0
DYD3_k127_5089077_2 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000008748 121.0
DYD3_k127_5089077_3 its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000006318 115.0
DYD3_k127_5089077_4 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000001128 101.0
DYD3_k127_5107041_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 458.0
DYD3_k127_5107041_1 Aminoacyl-tRNA editing domain K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 295.0
DYD3_k127_5107041_2 cheY-homologous receiver domain - - - 0.0000001645 59.0
DYD3_k127_5107709_0 S4 RNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009687 346.0
DYD3_k127_5107709_1 protein (some members contain a von Willebrand factor type A (vWA) domain - - - 0.0000000000000000000000000000000000000000009561 171.0
DYD3_k127_5137091_0 Protein of unknown function (DUF935) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000501 394.0
DYD3_k127_5137091_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 367.0
DYD3_k127_5137091_2 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 321.0
DYD3_k127_5137091_3 phage Terminase large subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001962 266.0
DYD3_k127_5137091_4 COGs COG4388 Mu-like prophage I protein - - - 0.000000000000000000000000000000000000000000000000000000005215 210.0
DYD3_k127_5137091_5 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.0000000000000000000000000000000000000007167 153.0
DYD3_k127_5137091_6 - - - - 0.0000000000000000000000000001775 118.0
DYD3_k127_5158130_0 Pterin binding enzyme K00548,K15023 - 2.1.1.13,2.1.1.258 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 319.0
DYD3_k127_5158130_1 Rossmann-like domain - - - 0.000000000000000000000000000000000001862 142.0
DYD3_k127_5158130_2 PFAM CO dehydrogenase acetyl-CoA synthase delta subunit K00194 - 2.1.1.245 0.000000002081 59.0
DYD3_k127_5161519_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003802 289.0
DYD3_k127_5161519_1 Deoxynucleoside kinase K15518 - 2.7.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000000002551 255.0
DYD3_k127_5161519_2 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950,K13940 - 2.7.6.3,4.1.2.25 0.0000000000000000000000000000000000000000000001248 173.0
DYD3_k127_5161519_3 Metal-dependent phosphohydrolase, HD region - - - 0.0000000000001922 82.0
DYD3_k127_5192786_0 PFAM Carbamoyl-phosphate synthase L chain ATP-binding K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006495 591.0
DYD3_k127_5192786_1 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 384.0
DYD3_k127_5192786_2 DNA methylase K00590 - 2.1.1.113 0.000000000000000000000000000000000000000005879 157.0
DYD3_k127_519987_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008071 260.0
DYD3_k127_519987_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000000000002482 123.0
DYD3_k127_5202311_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009422 472.0
DYD3_k127_5202311_1 PFAM Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000001233 226.0
DYD3_k127_5202311_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000003811 220.0
DYD3_k127_5202311_3 PFAM Cytochrome b5 - - - 0.000000000000000000000000000000000000000000000000001254 190.0
DYD3_k127_5210089_0 PFAM Type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008904 276.0
DYD3_k127_5210089_1 Serine threonine protein kinase - - - 0.00000000000008631 80.0
DYD3_k127_5210089_2 PFAM PEGA domain - - - 0.00004313 48.0
DYD3_k127_5230007_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1081.0
DYD3_k127_5230007_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 371.0
DYD3_k127_5230007_2 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 290.0
DYD3_k127_5230007_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000008314 271.0
DYD3_k127_5251509_0 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 398.0
DYD3_k127_5251509_1 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000001969 135.0
DYD3_k127_5251509_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000006948 110.0
DYD3_k127_5251509_3 Glycosyl hydrolases family 15 K07190 - - 0.000000000000000000000009213 109.0
DYD3_k127_5310317_0 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 1.176e-240 767.0
DYD3_k127_5310317_1 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0034641,GO:0043170,GO:0043737,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.21.7 0.000000000000000000000000000000003319 132.0
DYD3_k127_5310317_2 CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000000000000009139 130.0
DYD3_k127_532139_0 Belongs to the heme-copper respiratory oxidase family K00404,K15862 - 1.9.3.1 3.474e-214 673.0
DYD3_k127_532139_1 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 328.0
DYD3_k127_532139_2 Psort location Cytoplasmic, score K19824 - - 0.000000000000000000000000000000000000000000000000000000001942 205.0
DYD3_k127_532139_3 Belongs to the Fur family K03711,K09825 - - 0.00000000000000000000000000000000000000000001733 164.0
DYD3_k127_532139_4 - - - - 0.0000000000000000000000000000000000000013 151.0
DYD3_k127_532139_5 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.00008423 52.0
DYD3_k127_5326116_0 Utp--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000459 364.0
DYD3_k127_5326116_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000225 168.0
DYD3_k127_5326116_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000738 68.0
DYD3_k127_5326116_3 Psort location CytoplasmicMembrane, score - - - 0.0000001549 63.0
DYD3_k127_5331583_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 345.0
DYD3_k127_5331583_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 344.0
DYD3_k127_5331583_2 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000003068 51.0
DYD3_k127_5346089_0 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000005372 144.0
DYD3_k127_5346089_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000001437 127.0
DYD3_k127_5346089_2 Belongs to the UPF0102 family K07460 - - 0.000000005574 58.0
DYD3_k127_5353488_0 haloacid dehalogenase-like hydrolase K07026 - 3.1.3.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000008384 267.0
DYD3_k127_5353488_1 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000002862 148.0
DYD3_k127_5362701_0 Catalyzes the synthesis of GMP from XMP K01951,K03790 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.3.1.128,6.3.5.2 1.22e-204 649.0
DYD3_k127_5362701_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005728 456.0
DYD3_k127_5362701_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 408.0
DYD3_k127_5362701_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 398.0
DYD3_k127_5362701_4 TIGRFAM phosphate ABC transporter K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 372.0
DYD3_k127_5362701_5 arsenite transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 291.0
DYD3_k127_5362701_6 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.000000000000000000000000000000000000000000000000000000000000000000008768 241.0
DYD3_k127_5376081_0 biosynthesis protein ThiH K03150 - 4.1.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 372.0
DYD3_k127_5376081_1 PBS lyase HEAT domain protein repeat-containing protein - - - 0.000001099 55.0
DYD3_k127_5377777_0 FtsX-like permease family K02004 - - 1.412e-266 840.0
DYD3_k127_5377777_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000642 339.0
DYD3_k127_5377777_2 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000654 62.0
DYD3_k127_5380784_0 Domains REC, sigma54 interaction, HTH8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 575.0
DYD3_k127_5380784_1 Histidine kinase HAMP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008843 348.0
DYD3_k127_5380784_2 Pfam:N_methyl_2 K02456 - - 0.0000000000000000000000000000001884 130.0
DYD3_k127_5380784_3 Type II secretory pathway, pseudopilin - - - 0.00000000000000000000000000007997 125.0
DYD3_k127_5380784_4 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000002461 76.0
DYD3_k127_5389888_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000005227 252.0
DYD3_k127_5389888_1 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.000000000000000000000000000000000000000000000000000001131 196.0
DYD3_k127_5389888_2 Belongs to the peptidase M16 family - - - 0.00000000000000001522 86.0
DYD3_k127_5417971_0 Biotin-protein ligase, N terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004488 283.0
DYD3_k127_5417971_1 transferase activity, transferring glycosyl groups - - - 0.0002511 49.0
DYD3_k127_5455203_0 ACT domain K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005526 538.0
DYD3_k127_5455203_1 Proposed homoserine kinase K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 470.0
DYD3_k127_5455203_2 COG0666 FOG Ankyrin repeat K06867 - - 0.00000000000000000000005142 108.0
DYD3_k127_5455203_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000002438 74.0
DYD3_k127_546267_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 454.0
DYD3_k127_546267_1 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000003381 194.0
DYD3_k127_546267_2 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000007222 113.0
DYD3_k127_5464277_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 GO:0003674,GO:0003824,GO:0003938,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.1.1.205 6.45e-232 726.0
DYD3_k127_5484700_0 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000001322 207.0
DYD3_k127_5484700_1 Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K03769,K07533 - 5.2.1.8 0.0000000000000000174 96.0
DYD3_k127_5530018_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 7.276e-200 636.0
DYD3_k127_5530018_1 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 359.0
DYD3_k127_5530018_2 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000003736 239.0
DYD3_k127_5530018_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000897 151.0
DYD3_k127_5530018_4 cheY-homologous receiver domain - - - 0.0000000000001097 76.0
DYD3_k127_5556280_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.473e-198 626.0
DYD3_k127_5556280_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 611.0
DYD3_k127_5556280_2 PFAM SAICAR synthetase K01756,K01923 - 4.3.2.2,6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 303.0
DYD3_k127_5556280_3 PFAM MscS Mechanosensitive ion channel K16052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005192 250.0
DYD3_k127_5556280_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000000009116 227.0
DYD3_k127_5556280_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000006734 115.0
DYD3_k127_5576657_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 327.0
DYD3_k127_5576657_1 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000001101 249.0
DYD3_k127_55772_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 303.0
DYD3_k127_55772_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000007594 121.0
DYD3_k127_55772_2 thiamine biosynthesis protein ThiS K03154 - - 0.00000000000002628 76.0
DYD3_k127_5582958_0 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000003407 264.0
DYD3_k127_5582958_1 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000002455 196.0
DYD3_k127_5582958_2 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000002073 102.0
DYD3_k127_5582958_3 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000893 47.0
DYD3_k127_5597466_0 PFAM Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 295.0
DYD3_k127_5597466_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000001288 183.0
DYD3_k127_5616011_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000001236 270.0
DYD3_k127_5616011_1 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000002573 136.0
DYD3_k127_5616011_2 PBS lyase HEAT-like repeat - - - 0.0003282 49.0
DYD3_k127_5633073_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 6.605e-199 636.0
DYD3_k127_5633073_1 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 382.0
DYD3_k127_5633073_2 PFAM Cyclic nucleotide-binding K10914,K21563 - - 0.00000000000000000000000000000001141 136.0
DYD3_k127_5633073_3 Protein of unknown function (DUF721) - - - 0.00000000000000000001744 100.0
DYD3_k127_5637626_0 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 614.0
DYD3_k127_5637626_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 448.0
DYD3_k127_5637626_2 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000003442 192.0
DYD3_k127_5637626_3 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.000000000000000000000000000000001763 131.0
DYD3_k127_5637626_4 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000001664 107.0
DYD3_k127_5639439_0 PEP-utilising enzyme, N-terminal K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 619.0
DYD3_k127_5639439_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 431.0
DYD3_k127_5639439_2 PFAM ABC transporter related K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 328.0
DYD3_k127_5639439_3 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007182 310.0
DYD3_k127_5639439_4 PFAM response regulator receiver K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002762 289.0
DYD3_k127_5639439_5 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005362 275.0
DYD3_k127_5639439_6 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.000000000000000000000000000000000000000000009801 169.0
DYD3_k127_5639439_7 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000000000000000007964 153.0
DYD3_k127_5639439_8 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.00000000000000000000000000000000001424 139.0
DYD3_k127_5639439_9 TIGRFAM phosphocarrier, HPr family K11189 - - 0.00000000000000000000001066 109.0
DYD3_k127_5643162_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 452.0
DYD3_k127_5643162_1 Efflux ABC transporter permease protein K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 307.0
DYD3_k127_5643162_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 293.0
DYD3_k127_5643162_3 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000000000000000000000001439 242.0
DYD3_k127_5643162_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000549 152.0
DYD3_k127_5643162_5 membrane-bound metal-dependent hydrolase K07038 - - 0.0000000000000000000000008293 119.0
DYD3_k127_5643162_6 PFAM conserved K08316 - 2.1.1.171 0.0000000000000000403 82.0
DYD3_k127_5643162_7 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000526 64.0
DYD3_k127_566598_0 Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import K02007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001002 250.0
DYD3_k127_566598_1 TIGRFAM cobalt ABC transporter, inner membrane subunit CbiQ K02008 - - 0.00000000000000000000000000002954 127.0
DYD3_k127_566598_2 - - - - 0.0000000000000000724 90.0
DYD3_k127_566598_3 Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import K02007 - - 0.00000000002772 75.0
DYD3_k127_566598_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000007138 53.0
DYD3_k127_5712019_0 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 340.0
DYD3_k127_5712019_1 glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000000000000000000000000000000032 214.0
DYD3_k127_5741055_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 580.0
DYD3_k127_5741055_1 Histidine kinase - - - 0.000000000000000006569 96.0
DYD3_k127_5779665_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 526.0
DYD3_k127_5779665_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005753 406.0
DYD3_k127_5779665_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 305.0
DYD3_k127_5779665_3 Tetratricopeptide repeat - - - 0.0000000000007331 80.0
DYD3_k127_5787133_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 363.0
DYD3_k127_5787133_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000001179 216.0
DYD3_k127_5787133_2 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.0000000000000000000000000000006364 128.0
DYD3_k127_5787133_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K00969,K09710 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113 2.7.7.18 0.000000000000000000000000000004424 123.0
DYD3_k127_5787133_4 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000002258 115.0
DYD3_k127_5797378_0 Dehydratase family K01687 - 4.2.1.9 2.211e-247 775.0
DYD3_k127_5799384_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 479.0
DYD3_k127_5799384_1 peptidyl-tyrosine sulfation - - - 0.0000000000000002717 91.0
DYD3_k127_5799384_2 peptidyl-tyrosine sulfation - - - 0.00000000000006975 78.0
DYD3_k127_5799384_3 His Kinase A (phosphoacceptor) domain - - - 0.000000008055 67.0
DYD3_k127_580464_0 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K00595 - 2.1.1.132 0.0000000000000000000000000000000000000000000002278 174.0
DYD3_k127_580464_1 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K03394 - 2.1.1.130,2.1.1.151 0.000000000000000000000000000000000001257 141.0
DYD3_k127_580464_2 Precorrin-2 C(20)-methyltransferase K03394 - 2.1.1.130,2.1.1.151 0.00000000000000000003019 93.0
DYD3_k127_5836087_0 Homoserine dehydrogenase K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008423 488.0
DYD3_k127_5836087_1 Aminotransferase class I and II K10206,K14261 GO:0003674,GO:0003824,GO:0004021,GO:0006082,GO:0006090,GO:0006520,GO:0006522,GO:0006523,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009078,GO:0009079,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019272,GO:0019752,GO:0030632,GO:0032787,GO:0042851,GO:0042852,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046144,GO:0046145,GO:0046394,GO:0046416,GO:0046436,GO:0046437,GO:0047635,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000004838 212.0
DYD3_k127_5836087_2 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.0000000000000002992 79.0
DYD3_k127_5848544_0 amino acid-binding ACT domain protein K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 428.0
DYD3_k127_5848544_1 PFAM MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000000006779 213.0
DYD3_k127_5848544_2 TIGRFAM molybdenum cofactor synthesis domain - - - 0.0000000000000000000000000000000000000000000000000000000001036 212.0
DYD3_k127_5848544_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000003562 200.0
DYD3_k127_5848544_4 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000284 178.0
DYD3_k127_5848544_5 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000003199 90.0
DYD3_k127_5857217_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006566 343.0
DYD3_k127_5857217_1 WLM domain K07043 - - 0.00000000000000000000000000000000000000000008082 169.0
DYD3_k127_5857217_2 Phosphoribosyl transferase domain - - - 0.000000000000000000227 89.0
DYD3_k127_5857217_3 Forkhead associated domain - - - 0.00000004397 59.0
DYD3_k127_5862446_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003735 499.0
DYD3_k127_5862446_1 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001925 279.0
DYD3_k127_5862446_2 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000001898 168.0
DYD3_k127_5862446_3 4-amino-4-deoxy-L-arabinose transferase activity K14340 - - 0.0000000000000000000002243 112.0
DYD3_k127_5862446_4 response regulator - - - 0.0000002623 60.0
DYD3_k127_5863409_0 SIS domain K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006934 415.0
DYD3_k127_5863409_1 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 349.0
DYD3_k127_5863409_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000000000000000000000000000000000000000000000000000000001566 202.0
DYD3_k127_5863409_3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000001092 199.0
DYD3_k127_5863409_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000004188 179.0
DYD3_k127_5863409_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000002553 139.0
DYD3_k127_5866636_0 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 314.0
DYD3_k127_5866636_1 ferrous iron binding K06990,K09141 - - 0.0000000000000000000000000000000000000000000000000000000002165 211.0
DYD3_k127_5866636_2 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.000000000000000000000368 102.0
DYD3_k127_5914305_0 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 517.0
DYD3_k127_5914305_1 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006752 334.0
DYD3_k127_5914305_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009322 295.0
DYD3_k127_5914305_3 Intracellular protease, PfpI K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000002767 211.0
DYD3_k127_5914305_4 heme-binding sites - - - 0.00000000000000000000000002765 116.0
DYD3_k127_5969258_0 Memo-like protein K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 361.0
DYD3_k127_6005811_0 PFAM Aminotransferase class I and II K10206,K14261 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 547.0
DYD3_k127_6005811_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 344.0
DYD3_k127_6017872_0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008487 446.0
DYD3_k127_6017872_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 293.0
DYD3_k127_6017872_2 Belongs to the CDS family K00981 GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.41 0.000000000000000000000000000000000000000000000000000000004942 211.0
DYD3_k127_6017872_3 PDZ DHR GLGF domain protein K11749 - - 0.00000000000000000000000000001254 120.0
DYD3_k127_6017872_4 cAMP biosynthetic process - - - 0.000009186 53.0
DYD3_k127_6042089_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.144e-219 699.0
DYD3_k127_6042089_1 Tetratricopeptide repeat - - - 0.000000000000006414 85.0
DYD3_k127_6062261_0 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.000000000000000000000000000000000000000000000000000000007987 207.0
DYD3_k127_6062261_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000005832 196.0
DYD3_k127_6062261_2 Catalyzes the conversion of dihydroorotate to orotate K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.00000000000001812 74.0
DYD3_k127_6072520_0 7TM receptor with intracellular HD hydrolase K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 405.0
DYD3_k127_6072520_1 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000001072 164.0
DYD3_k127_6072520_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000009024 81.0
DYD3_k127_6078363_0 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000000000000001035 190.0
DYD3_k127_6078363_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000004685 179.0
DYD3_k127_6112944_0 PD-(D/E)XK nuclease superfamily - - - 0.0000000000007203 82.0
DYD3_k127_6112944_1 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.00000009913 58.0
DYD3_k127_6113009_0 SMART Elongator protein 3 MiaB NifB K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007509 548.0
DYD3_k127_6113009_1 COGs COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 337.0
DYD3_k127_6113009_2 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000000000000000000004299 173.0
DYD3_k127_6113009_3 ABC1 family K03688 - - 0.00000000000000000000000000000000000001537 149.0
DYD3_k127_612677_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 386.0
DYD3_k127_612677_1 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.000000000000000000000000000000000000000000000000008366 190.0
DYD3_k127_612677_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000001033 168.0
DYD3_k127_612677_3 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000003241 101.0
DYD3_k127_612677_4 Putative zinc- or iron-chelating domain - - - 0.000000009444 65.0
DYD3_k127_612677_5 Domain of unknown function (DUF4911) - - - 0.00001213 51.0
DYD3_k127_6149209_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 368.0
DYD3_k127_6149209_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
DYD3_k127_6149209_2 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 346.0
DYD3_k127_6149209_3 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000009118 201.0
DYD3_k127_6149209_4 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000009532 105.0
DYD3_k127_615035_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000724 487.0
DYD3_k127_615035_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000000000000000000000000000000000005109 147.0
DYD3_k127_615035_2 FAD dependent oxidoreductase K07137 - - 0.00000000000000000001258 99.0
DYD3_k127_6151130_0 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 408.0
DYD3_k127_6151130_1 (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 292.0
DYD3_k127_6151130_2 Belongs to the LarC family K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000009967 265.0
DYD3_k127_6151130_3 acetyltransferase K00661 - 2.3.1.79 0.0000000000000000000000000000001141 126.0
DYD3_k127_6184838_0 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 322.0
DYD3_k127_6184838_1 PFAM response regulator receiver - - - 0.0000000000000000000000000000001035 128.0
DYD3_k127_6184838_2 PFAM Ankyrin repeat K06867 - - 0.0000000000000000000000000000169 128.0
DYD3_k127_6184838_3 nucleic acid-binding protein contains PIN domain - - - 0.000000000000000000000004584 106.0
DYD3_k127_6184838_4 spectrin binding K15502,K19947 - 1.14.13.225 0.00000000000000000002809 101.0
DYD3_k127_6184838_5 - - - - 0.0000000002685 64.0
DYD3_k127_6186523_0 TIGRFAM MazG family protein K02428,K02499 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 304.0
DYD3_k127_6186523_1 ABC transporter, ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000002211 177.0
DYD3_k127_6186523_2 ATP binding cassette transporter ABC protein K01990 - - 0.0000000000000000000000000000000001994 137.0
DYD3_k127_6186523_3 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 0.0000000000000000000000939 106.0
DYD3_k127_6186523_4 - - - - 0.000000000000001906 79.0
DYD3_k127_6186523_5 - - - - 0.00001442 49.0
DYD3_k127_6186523_6 - K01992 - - 0.0006585 52.0
DYD3_k127_6188925_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 7.71e-210 661.0
DYD3_k127_6188925_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 351.0
DYD3_k127_6188925_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000118 271.0
DYD3_k127_6188925_3 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000003402 202.0
DYD3_k127_6188925_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000000002568 130.0
DYD3_k127_6203570_0 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004266 259.0
DYD3_k127_6203570_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000001525 204.0
DYD3_k127_6203570_2 signal sequence binding K07152 - - 0.00000000000000000000000000000000000000000000000000007553 196.0
DYD3_k127_6203570_3 von Willebrand factor type A domain K07114 - - 0.0000000000000000000000000000000000000000000006478 175.0
DYD3_k127_6213358_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 556.0
DYD3_k127_6213358_1 PFAM GCN5-related N-acetyltransferase K21935 - 2.3.1.264 0.00000000000000000000000000000000000000000000000000000000001717 212.0
DYD3_k127_6218059_0 thiolester hydrolase activity K01563 - 3.8.1.5 0.0000000000000000000000000000000000000000000005369 175.0
DYD3_k127_6218059_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.00000000000000000000000000000000000004296 147.0
DYD3_k127_6218059_2 - - - - 0.0000000000000001856 83.0
DYD3_k127_6252123_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00437,K00533,K05922,K06281 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.12.2.1,1.12.5.1,1.12.7.2,1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 571.0
DYD3_k127_6252123_1 Hydrogenase (NiFe) small subunit HydA K05927,K06282,K18008 - 1.12.2.1,1.12.5.1,1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 332.0
DYD3_k127_6252123_2 respiratory electron transport chain K03620 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000002555 95.0
DYD3_k127_6252123_3 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000001234 73.0
DYD3_k127_6252123_4 - - - - 0.0000000000003501 72.0
DYD3_k127_6264957_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 466.0
DYD3_k127_6264957_1 Domain of unknown function (DUF389) - - - 0.00000000000000000000000000000001069 134.0
DYD3_k127_6264957_2 RecX family K03565 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000008331 95.0
DYD3_k127_6274699_0 PFAM NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 395.0
DYD3_k127_6274699_1 Glycosyl transferase family group 2 K00720 - 2.4.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 337.0
DYD3_k127_6274699_2 Carotenoid biosynthesis protein - - - 0.000000000000000000000000000000000000003922 151.0
DYD3_k127_6274699_3 EamA-like transporter family - - - 0.000000000000000001117 90.0
DYD3_k127_6274699_4 Lipid A 3-O-deacylase (PagL) - - - 0.000000000008705 73.0
DYD3_k127_6274699_5 COG0457 FOG TPR repeat - - - 0.00005449 52.0
DYD3_k127_6280420_0 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 499.0
DYD3_k127_6280420_1 Peptidase M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 366.0
DYD3_k127_6280420_2 MlaD protein K02067 - - 0.000000000000000000000000000006063 127.0
DYD3_k127_6294887_0 PFAM ROK family protein K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000001103 260.0
DYD3_k127_6294887_1 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000001974 225.0
DYD3_k127_6294887_2 nitrogen fixation - - - 0.00000000000001661 79.0
DYD3_k127_634068_0 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 406.0
DYD3_k127_634068_1 PFAM Dehydrogenase, E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004505 364.0
DYD3_k127_634068_2 PFAM Cupin - - - 0.000000000000000000000000000000000000000001513 158.0
DYD3_k127_634068_3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.000000000000000000002129 102.0
DYD3_k127_634068_4 rubredoxin - - - 0.000000000000000005056 85.0
DYD3_k127_634068_5 PFAM Colicin V production protein K03558 - - 0.000000000004889 73.0
DYD3_k127_6391025_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 395.0
DYD3_k127_6391025_1 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000106 146.0
DYD3_k127_6396419_0 Belongs to the glutamate synthase family K00265 - 1.4.1.13,1.4.1.14 7.643e-227 711.0
DYD3_k127_6396419_1 Glutamine amidotransferases class-II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003389 492.0
DYD3_k127_6396419_2 PFAM glutamate synthase alpha subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009701 323.0
DYD3_k127_6396419_3 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001487 284.0
DYD3_k127_6396419_4 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.0000000000000000000002454 104.0
DYD3_k127_6406154_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000009085 223.0
DYD3_k127_6406154_1 Sensor histidine kinase, HAMP and PAS domain-containing - - - 0.000000000000006832 83.0
DYD3_k127_6422861_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 GO:0000166,GO:0000287,GO:0000502,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009376,GO:0009408,GO:0009628,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019904,GO:0022607,GO:0030554,GO:0031597,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034214,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043335,GO:0043933,GO:0044085,GO:0044238,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051259,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1904949,GO:1905368,GO:1905369 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000653 596.0
DYD3_k127_6422861_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003313 277.0
DYD3_k127_6422861_2 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000195 245.0
DYD3_k127_6422861_3 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.00000000000000000000000000000000000000000000000000000008996 200.0
DYD3_k127_6431746_0 HAD-hyrolase-like K07025 - - 0.000000000000000000000000000000000000000000006598 175.0
DYD3_k127_6431746_1 Phosphotransferase enzyme family - - - 0.000000000000000000000002974 104.0
DYD3_k127_6431746_2 Protein of unknown function (DUF2723) - - - 0.00000000000000000000006039 104.0
DYD3_k127_6431746_3 Redoxin - - - 0.000000000007673 76.0
DYD3_k127_6431746_4 peptidyl-tyrosine sulfation - - - 0.00000000001829 75.0
DYD3_k127_6433793_0 plastoquinone (Complex I) K12141 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 499.0
DYD3_k127_6433793_1 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 335.0
DYD3_k127_6433793_2 hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000000000000002195 183.0
DYD3_k127_6433793_3 Proton-conducting membrane transporter - - - 0.0000000000000000000000000000000000002147 150.0
DYD3_k127_6454493_0 PFAM ResB family protein K07399 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002692 280.0
DYD3_k127_6454493_1 L-threonylcarbamoyladenylate synthase K01104,K07566 GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363 2.7.7.87,3.1.3.48 0.000000000000000000000000000000000000000000009189 170.0
DYD3_k127_6454493_2 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000008473 165.0
DYD3_k127_6461447_0 Elongation factor Tu domain 2 K02355 - - 5.937e-226 717.0
DYD3_k127_6461447_1 PFAM peptidase S1 and S6, chymotrypsin Hap K04771,K04772 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000001303 224.0
DYD3_k127_6462606_0 aminopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 363.0
DYD3_k127_6462606_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000005676 183.0
DYD3_k127_6462606_2 Anaphase-promoting complex, cyclosome, subunit 3 - - - 0.0000000000000000000000000000000000000000000000006123 202.0
DYD3_k127_6462606_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000002257 148.0
DYD3_k127_6462606_4 Proline dehydrogenase K00318 - - 0.0000000000000000000000023 106.0
DYD3_k127_6462606_5 Uncharacterized protein conserved in bacteria (DUF2135) - - - 0.0000000003038 74.0
DYD3_k127_6462606_6 HEAT repeat - - - 0.000001196 60.0
DYD3_k127_6465706_0 Patatin-like phospholipase K01999,K07001 - - 0.000000000000000111 92.0
DYD3_k127_6465706_1 translation initiation factor activity K00694 - 2.4.1.12 0.00000000000297 79.0
DYD3_k127_6493069_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 393.0
DYD3_k127_6493069_1 BadF BadG BcrA BcrD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000983 280.0
DYD3_k127_6493069_2 NAD- dependent epimerase dehydratase K01710,K08678 - 4.1.1.35,4.2.1.46 0.0000000000000000000000000000000000000000000003099 169.0
DYD3_k127_6493069_3 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000003708 96.0
DYD3_k127_6493069_4 Lipid A 3-O-deacylase (PagL) - - - 0.000000000000002045 86.0
DYD3_k127_649735_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 476.0
DYD3_k127_649735_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000005495 177.0
DYD3_k127_649735_2 Preprotein translocase subunit K03210 - - 0.00000000000000000000000000003715 119.0
DYD3_k127_652314_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 1.126e-250 787.0
DYD3_k127_652314_1 PFAM Uncharacterised protein family UPF0150 - - - 0.0000000003387 64.0
DYD3_k127_6561055_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007204 402.0
DYD3_k127_6561055_1 Anthranilate synthase component I, N terminal region K01657,K13503 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 350.0
DYD3_k127_6561055_2 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 305.0
DYD3_k127_6561055_3 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000001154 262.0
DYD3_k127_6563077_0 Anthranilate synthase component I K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 360.0
DYD3_k127_6563077_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 308.0
DYD3_k127_6563077_2 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.00000000000000000000000000000000000000000000000000000000001062 216.0
DYD3_k127_6567982_0 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 353.0
DYD3_k127_6567982_1 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 329.0
DYD3_k127_6567982_2 ATP-grasp domain K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 298.0
DYD3_k127_6580633_0 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 359.0
DYD3_k127_6580633_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001927 263.0
DYD3_k127_6580633_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000006466 242.0
DYD3_k127_6612189_0 COG0475 Kef-type K transport systems, membrane components K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000009088 246.0
DYD3_k127_6612189_1 TrkA-C domain protein K07228 - - 0.00000000000000000000000000000000001999 142.0
DYD3_k127_6612189_2 iron ion binding - - - 0.00000000000000000000000000003541 125.0
DYD3_k127_6612189_3 EamA-like transporter family - - - 0.0000000000004321 79.0
DYD3_k127_6612189_4 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) - - - 0.00000000001098 72.0
DYD3_k127_6671144_0 TIGRFAM ribonuclease, Rne Rng family K08300,K08301 - 3.1.26.12 7.121e-200 634.0
DYD3_k127_6671144_1 PFAM phosphoesterase RecJ domain protein - - - 0.000000000000000000000000000000000000000000000000000000003963 214.0
DYD3_k127_6671144_2 Protein of unknown function (DUF2723) - - - 0.00000000000000000000001191 111.0
DYD3_k127_6671144_3 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000621 99.0
DYD3_k127_6690018_0 PFAM aminotransferase, class I and II K10206 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0010285,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0033362,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 572.0
DYD3_k127_6690018_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 322.0
DYD3_k127_6690018_10 Regulatory protein, FmdB family - - - 0.00000006877 57.0
DYD3_k127_6690018_11 COG2853 Surface lipoprotein K04754 - - 0.0008324 47.0
DYD3_k127_6690018_2 fumarylacetoacetate (FAA) hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 295.0
DYD3_k127_6690018_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000002455 220.0
DYD3_k127_6690018_4 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000008159 213.0
DYD3_k127_6690018_5 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000009692 168.0
DYD3_k127_6690018_6 Siroheme synthase K02304 - 1.3.1.76,4.99.1.4 0.000000000000000000000000000000000000000001141 164.0
DYD3_k127_6690018_7 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535,K13599 - 3.5.1.108 0.000000000000000000000000000000000000000004598 159.0
DYD3_k127_6690018_8 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000002363 139.0
DYD3_k127_6690018_9 Tetratricopeptide repeat K05807 - - 0.00000000000000000000000000000000008402 143.0
DYD3_k127_67253_0 PFAM FAD linked oxidase domain protein K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000878 459.0
DYD3_k127_67253_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.00000000000000000000000000000000000000000000000000000002067 201.0
DYD3_k127_6749883_0 Tryptophanyl-tRNA synthetase K01867 GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 338.0
DYD3_k127_6749883_1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 328.0
DYD3_k127_6749883_2 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000111 238.0
DYD3_k127_6763351_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.484e-203 654.0
DYD3_k127_6763351_1 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 422.0
DYD3_k127_6763351_2 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000007679 223.0
DYD3_k127_6767934_0 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 434.0
DYD3_k127_6767934_1 Amino acid kinase family K00926 - 2.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007105 356.0
DYD3_k127_6767934_2 photoreceptor activity - - - 0.000000000000000000000000000000001259 145.0
DYD3_k127_6767934_3 PAS domain - - - 0.000000000000000000000000000000003109 143.0
DYD3_k127_6767934_4 cyclic 2,3-diphosphoglycerate synthetase activity K05716 - - 0.000000000000000000007743 94.0
DYD3_k127_6767934_5 - - - - 0.0002378 45.0
DYD3_k127_6785978_0 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009432 392.0
DYD3_k127_679283_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000225 238.0
DYD3_k127_679283_1 dienelactone hydrolase - - - 0.0002392 48.0
DYD3_k127_6799182_0 Belongs to the peptidase S16 family K04076 - 3.4.21.53 1.456e-214 678.0
DYD3_k127_6799182_1 ATP-binding region, ATPase domain protein domain protein - - - 0.0000000000000000000000000000001156 134.0
DYD3_k127_6799182_2 transcriptional regulator containing an HTH domain fused to a Zn-ribbon K07743 - - 0.0000000000000000000002908 100.0
DYD3_k127_6799182_3 Histidine kinase - - - 0.0000000000000007388 87.0
DYD3_k127_6799182_4 metal-dependent phosphoesterases (PHP family) - - - 0.000000001634 68.0
DYD3_k127_6803466_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000002407 170.0
DYD3_k127_6803466_1 Histidine kinase - - - 0.000000000000000000000000000122 128.0
DYD3_k127_6823054_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 444.0
DYD3_k127_682539_0 Surface antigen K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000006472 244.0
DYD3_k127_682539_1 NfeD-like C-terminal, partner-binding K07403 - - 0.00000000000000000000000000000000001788 139.0
DYD3_k127_682539_2 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 - 5.2.1.8 0.00000000000007363 79.0
DYD3_k127_6830715_0 Thiamine biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003046 276.0
DYD3_k127_6830715_1 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000002371 209.0
DYD3_k127_6848401_0 - - - - 0.000000000000000000000000000000000000000000000007809 184.0
DYD3_k127_6862063_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 362.0
DYD3_k127_6862063_1 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001834 243.0
DYD3_k127_6862063_2 Domain of unknown function - - - 0.00000000000000000000000000000000000000000000000000000000005572 216.0
DYD3_k127_6862063_3 TIGRFAM FeS cluster assembly scaffold protein NifU K04488 - - 0.000000000000000000000000000000000000000000000000000000001677 201.0
DYD3_k127_6862063_4 peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000005283 190.0
DYD3_k127_6862063_5 OsmC-like protein K07397 - - 0.00000000000000000000000000000000000000000006443 164.0
DYD3_k127_6862063_6 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000000000008822 97.0
DYD3_k127_6869238_0 cytochrome C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000378 362.0
DYD3_k127_6869238_1 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559 323.0
DYD3_k127_6869238_2 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000006418 198.0
DYD3_k127_6869238_3 PFAM CheW domain protein K03408 - - 0.0000000000000000000000000000000002999 137.0
DYD3_k127_6875019_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 3.459e-222 704.0
DYD3_k127_6875019_1 PFAM Radical SAM K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 460.0
DYD3_k127_6875019_2 COGs COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 325.0
DYD3_k127_6875019_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000161 197.0
DYD3_k127_6875019_4 Nitrogen-fixing NifU domain protein - - - 0.00000000000000000000001888 100.0
DYD3_k127_6875019_5 Divergent 4Fe-4S mono-cluster K05337 - - 0.00000000000000001715 83.0
DYD3_k127_6875019_6 Pterin binding enzyme K15023 - 2.1.1.258 0.0000000000000007641 87.0
DYD3_k127_6875019_7 - - - - 0.00000000000001603 76.0
DYD3_k127_6875019_8 Carboxymuconolactone decarboxylase family - - - 0.000000006634 59.0
DYD3_k127_6903739_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335,K03469 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0030312,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7,3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 548.0
DYD3_k127_693890_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 516.0
DYD3_k127_693890_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006055 422.0
DYD3_k127_693890_2 Alginate export - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 303.0
DYD3_k127_693890_3 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 293.0
DYD3_k127_693890_4 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000016 259.0
DYD3_k127_693890_5 Antibiotic biosynthesis monooxygenase K09932 - - 0.0000000000000000000000000000000000000002474 156.0
DYD3_k127_693890_6 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.0000000000000000000000000003838 119.0
DYD3_k127_6947153_0 protein histidine kinase activity K07679,K10439 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000007045 201.0
DYD3_k127_6947153_1 PAS domain - - - 0.0000000000629 75.0
DYD3_k127_6953882_0 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000457 164.0
DYD3_k127_6953882_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000000000002574 128.0
DYD3_k127_6953882_2 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 GO:0001530,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0008289,GO:0009279,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044462,GO:0044464,GO:0045229,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071709,GO:0071840,GO:0071944,GO:0097367,GO:1901264 - 0.00000000000107 75.0
DYD3_k127_6961907_0 Peptidase family M23 K21471 - - 0.000000000000000000000000000000000000000000000004996 188.0
DYD3_k127_6961907_1 LysE type translocator - - - 0.000000000000000000000000000005564 123.0
DYD3_k127_6961907_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000003726 80.0
DYD3_k127_6967438_0 nitrogenase component I, alpha chain K02586 - 1.18.6.1 2.802e-238 744.0
DYD3_k127_6967438_1 Nitrogenase component 1 type Oxidoreductase K02587 - - 5.362e-216 689.0
DYD3_k127_6967438_2 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 599.0
DYD3_k127_6967438_3 The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components the iron protein and the molybdenum-iron protein K02588,K04037,K11333 - 1.18.6.1,1.3.7.14,1.3.7.15,1.3.7.7 0.0000001229 53.0
DYD3_k127_6981383_0 Beta-lactamase superfamily domain K06167 - 3.1.4.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002631 278.0
DYD3_k127_6981383_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000002516 175.0
DYD3_k127_6981383_2 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA K21103,K21460 - 2.1.1.304,2.1.1.327 0.00000000000000000000000000000001482 138.0
DYD3_k127_6981383_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000005575 122.0
DYD3_k127_6981383_4 Aldehyde dehydrogenase family K00128,K00135,K22187 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.79 0.000000000000000000002336 97.0
DYD3_k127_7016547_0 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.0000000000000000000000000000000000000000000000000000006405 202.0
DYD3_k127_7016547_1 Ribonuclease H K03469 - 3.1.26.4 0.00000000000000000000000000000000000003442 151.0
DYD3_k127_7016547_2 phosphorelay signal transduction system K02584,K07713 - - 0.00000000000000000001014 95.0
DYD3_k127_7016547_3 C4-type zinc ribbon domain K07164 - - 0.0000000000000000002547 99.0
DYD3_k127_7016547_4 ATP hydrolysis coupled proton transport - - - 0.000004255 59.0
DYD3_k127_7035697_0 PFAM response regulator receiver - - - 0.0000000000000000000000000000000000000009418 153.0
DYD3_k127_7035697_1 Zincin-like metallopeptidase K00930 - 2.7.2.8 0.00000000000000000000000001446 113.0
DYD3_k127_7035697_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000009947 88.0
DYD3_k127_7035697_3 Curli production assembly transport component CsgG - - - 0.0000005286 60.0
DYD3_k127_7045761_0 tRNA nucleotidyltransferase poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000001854 241.0
DYD3_k127_7045761_1 - - - - 0.0000000000000000000000000000000001271 139.0
DYD3_k127_7045761_2 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000001265 119.0
DYD3_k127_7045761_4 DNA polymerase K02337 - 2.7.7.7 0.00000001187 58.0
DYD3_k127_7045761_5 Single-strand binding protein family K03111 - - 0.000008409 48.0
DYD3_k127_7046710_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.578e-279 876.0
DYD3_k127_7046710_1 response to heat K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004422 284.0
DYD3_k127_7046710_2 UTRA K03710 - - 0.00000000000000000000000000002443 126.0
DYD3_k127_7046710_3 Phospholipase D. Active site motifs. - - - 0.000000000000005557 78.0
DYD3_k127_7068078_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000002702 203.0
DYD3_k127_7068078_1 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.000000000000000000000000000000000002091 142.0
DYD3_k127_7068078_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000007384 90.0
DYD3_k127_7068078_3 4Fe-4S dicluster domain - - - 0.000000000000001444 77.0
DYD3_k127_7068078_4 PFAM DsrE family protein K07235 - - 0.0000006066 51.0
DYD3_k127_7094201_0 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000004879 247.0
DYD3_k127_7097674_0 Belongs to the MlaE permease family K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003274 257.0
DYD3_k127_7097674_1 ABC transporter, ATP-binding protein K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000001409 241.0
DYD3_k127_7097674_2 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000001578 212.0
DYD3_k127_7104986_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000462 381.0
DYD3_k127_7104986_1 phospho-N-acetylmuramoyl-pentapeptide-transferase activity K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000004014 237.0
DYD3_k127_7104986_2 Glycosyltransferase like family 2 K07011 - - 0.0000000000000000000000000000000000000000000000000000000000004747 222.0
DYD3_k127_7112647_0 PFAM natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003747 439.0
DYD3_k127_7112647_1 nodulation K00612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 399.0
DYD3_k127_7112647_2 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001121 271.0
DYD3_k127_7112647_3 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000008685 190.0
DYD3_k127_712733_0 Belongs to the MlaE permease family K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 315.0
DYD3_k127_712733_1 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 300.0
DYD3_k127_712733_2 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000001354 183.0
DYD3_k127_712733_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses K01916,K01950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5,6.3.5.1 0.00000000000000000000000003116 110.0
DYD3_k127_7130127_0 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003026 395.0
DYD3_k127_7130127_1 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000271 144.0
DYD3_k127_7130127_2 Protein of unknown function (DUF3106) - - - 0.0000000000000000001587 97.0
DYD3_k127_7130127_3 Putative zinc-finger - - - 0.000000000004529 77.0
DYD3_k127_7130127_4 argininosuccinate lyase K01755 - 4.3.2.1 0.0001485 45.0
DYD3_k127_7134678_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 413.0
DYD3_k127_7134678_1 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 308.0
DYD3_k127_7134678_2 Putative inner membrane exporter, YdcZ K09936 - - 0.0000000000000000000000000000000000000000004783 162.0
DYD3_k127_7134678_3 PFAM sodium calcium exchanger K07301 - - 0.00000000000000000000000000000000001638 139.0
DYD3_k127_7134678_4 - - - - 0.0000000000008865 73.0
DYD3_k127_7134678_5 - - - - 0.000000007952 59.0
DYD3_k127_7140260_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008538 542.0
DYD3_k127_7140260_1 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 332.0
DYD3_k127_7161577_0 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 486.0
DYD3_k127_7161577_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 336.0
DYD3_k127_7161577_2 PFAM Pyruvate ketoisovalerate oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000867 194.0
DYD3_k127_7161577_3 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.00000000000000000000000000000000000000001635 166.0
DYD3_k127_7161577_4 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000003866 125.0
DYD3_k127_7187632_0 Beta-ketoacyl synthase, C-terminal domain K05551 - 2.3.1.235,2.3.1.260 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 404.0
DYD3_k127_7187632_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 324.0
DYD3_k127_7187632_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000003263 218.0
DYD3_k127_7187632_3 - - - - 0.00000003057 58.0
DYD3_k127_719335_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006866 363.0
DYD3_k127_719335_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009029 271.0
DYD3_k127_719335_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000001194 177.0
DYD3_k127_7196730_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 560.0
DYD3_k127_7197464_0 Valyl tRNA synthetase tRNA binding arm K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1140.0
DYD3_k127_7197464_1 - - - - 0.0000682 47.0
DYD3_k127_7221776_0 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 548.0
DYD3_k127_7221776_1 TIGRFAM Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 309.0
DYD3_k127_7221776_2 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000001973 154.0
DYD3_k127_7229470_0 PFAM CO dehydrogenase acetyl-CoA synthase complex beta subunit K14138 - 2.3.1.169 1.404e-262 828.0
DYD3_k127_7229470_1 acetyl-CoA catabolic process K00197 - 2.1.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 331.0
DYD3_k127_745992_0 MMPL family K18138,K18902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 393.0
DYD3_k127_745992_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 362.0
DYD3_k127_745992_2 Tetracycline repressor, C-terminal all-alpha domain - - - 0.0000000000000000000000000000000000000000000000000003325 191.0
DYD3_k127_794571_0 Evidence 4 Homologs of previously reported genes of K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005275 266.0
DYD3_k127_794571_1 Belongs to the precorrin methyltransferase family K02303 GO:0003674,GO:0003824,GO:0004851,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008757,GO:0009058,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019354,GO:0019438,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046156,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000766 246.0
DYD3_k127_794571_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002358 237.0
DYD3_k127_794571_3 Lipoate--protein ligase K03800 - 6.3.1.20 0.00000000000000000000000000000000000000000000000000000000006828 215.0
DYD3_k127_794571_4 DsrC like protein K11179 - - 0.0000000000000000000000001232 113.0
DYD3_k127_794571_5 OsmC-like protein K07397 - - 0.00000000000000000000005913 104.0
DYD3_k127_794571_6 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000009011 85.0
DYD3_k127_794571_7 Domain of unknown function (DUF1732) - - - 0.000001792 50.0
DYD3_k127_812741_0 Belongs to the RuBisCO large chain family K01601 - 4.1.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007546 290.0
DYD3_k127_812741_1 of the PP-loop superfamily K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000006199 238.0
DYD3_k127_812741_2 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001199 244.0
DYD3_k127_812741_3 SMART Tetratricopeptide - - - 0.00000000000000000226 94.0
DYD3_k127_812741_4 monooxygenase activity K00688,K15760,K16157,K16242,K18223,K22353,K22357 GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0008150,GO:0008152,GO:0009987,GO:0015049,GO:0015050,GO:0015947,GO:0016491,GO:0016705,GO:0016709,GO:0032991,GO:0043446,GO:0044237,GO:0055114,GO:0071704,GO:1902494 1.14.13.227,1.14.13.236,1.14.13.25,1.14.13.69,2.4.1.1 0.00000001359 60.0
DYD3_k127_812741_5 - - - - 0.0000003469 58.0
DYD3_k127_817974_0 Cation transport ATPase (P-type) K01537 - 3.6.3.8 0.0000000000000000000000000005092 116.0
DYD3_k127_817974_1 Protein of unknown function (DUF507) K09804 - - 0.00000000001201 69.0
DYD3_k127_817974_2 Protein of unknown function (DUF507) K09804 - - 0.0000000001979 62.0
DYD3_k127_817974_3 diguanylate cyclase - - - 0.0000004025 62.0
DYD3_k127_82542_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 443.0
DYD3_k127_82542_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005587 297.0
DYD3_k127_82542_2 Transcriptional regulator, MerR family - - - 0.000000000000000000000000000001013 125.0
DYD3_k127_837837_0 Alpha beta hydrolase superfamily K01563 - 3.8.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 288.0
DYD3_k127_837837_1 - - - - 0.0000000000000000000000000000005739 130.0
DYD3_k127_837837_2 LexA-binding, inner membrane-associated putative hydrolase - - - 0.0000000000000000000000002263 112.0
DYD3_k127_87682_0 Binding-protein-dependent transport system inner membrane component K05773 - - 0.00000000000000000000000000000000000000000000000000000000000000001458 232.0
DYD3_k127_87682_1 PBP superfamily domain K05772 - - 0.00000000000000000000000000000000000000000000000000000000001904 212.0
DYD3_k127_87682_2 Belongs to the ABC transporter superfamily K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000003071 198.0
DYD3_k127_87682_3 - - - - 0.0000000000000000006021 89.0
DYD3_k127_897385_0 epimerase K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 373.0
DYD3_k127_897385_1 heat shock protein binding - - - 0.0000000000000000000000000006664 129.0
DYD3_k127_897385_2 DnaJ C terminal domain K03686 - - 0.00000003083 66.0
DYD3_k127_901755_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 421.0
DYD3_k127_901755_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 324.0
DYD3_k127_91913_0 Large family of predicted nucleotide-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006004 331.0
DYD3_k127_91913_1 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000004192 237.0
DYD3_k127_91913_2 Serine acetyltransferase, N-terminal K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000828 226.0
DYD3_k127_91913_3 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.000000000000000000000000000000000000000000000000000000000000000928 226.0
DYD3_k127_954404_0 CoA enzyme activase uncharacterised domain (DUF2229) - - - 1.143e-203 650.0
DYD3_k127_954404_1 Nicotinic acid phosphoribosyltransferase K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004714 524.0
DYD3_k127_954404_2 Isochorismatase family K08281 - 3.5.1.19 0.00000000000000000000000000000000000000000000000000001002 196.0
DYD3_k127_954404_3 Protein of unknown function (DUF1318) - - - 0.00000000000000000000000000000007343 130.0
DYD3_k127_99779_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 361.0