Overview

ID MAG00973
Name DYD3_bin.49
Sample SMP0027
Taxonomy
Kingdom Archaea
Phylum Thermoplasmatota
Class E2
Order JACPAO01
Family JACPAO01
Genus JACPAO01
Species
Assembly information
Completeness (%) 69.68
Contamination (%) 3.68
GC content (%) 67.0
N50 (bp) 10,925
Genome size (bp) 2,115,105

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1696

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1002772_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000004519 224.0
DYD3_k127_1002772_1 Amidohydrolase family K01465 - 3.5.2.3 0.0000000000000000000000000172 119.0
DYD3_k127_1027437_0 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360 2.7.4.6 0.00000000000000000000000000000000000000000000000000309 189.0
DYD3_k127_1027437_1 Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H ACA, box C D and box C' D' sRNAs K02936 GO:0000470,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000004446 143.0
DYD3_k127_1027437_2 Belongs to the eukaryotic ribosomal protein eS28 family K02979 - - 0.0000000000000000000000000002538 115.0
DYD3_k127_1027437_3 binds to the 23S rRNA K02896 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904 - 0.00000000000000008204 83.0
DYD3_k127_1027437_4 TonB-dependent receptor - - - 0.000000001582 69.0
DYD3_k127_1027437_5 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region K21573 - - 0.0000005783 57.0
DYD3_k127_1027437_6 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region K21573 - - 0.0004823 52.0
DYD3_k127_1043173_0 KH, type 1, domain K07041 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009704 282.0
DYD3_k127_1043173_1 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03433 GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004298,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0019538,GO:0019774,GO:0030163,GO:0032991,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0070003,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.000000000000000000000000000000000000000000000000000000000002706 217.0
DYD3_k127_1043173_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.0000000000000000000000000003059 126.0
DYD3_k127_1043173_3 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000005637 96.0
DYD3_k127_1043173_4 metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain K07041 - - 0.000000005973 57.0
DYD3_k127_1043173_5 - - - - 0.000001454 55.0
DYD3_k127_1043173_6 - - - - 0.000004679 56.0
DYD3_k127_1043562_0 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000009359 233.0
DYD3_k127_1043562_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000003545 153.0
DYD3_k127_1043562_2 PFAM glycosyl transferase group 1 K12995 - 2.4.1.348 0.000000000000000000000000000000000005291 158.0
DYD3_k127_1043562_3 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000082 119.0
DYD3_k127_1043562_4 HYR domain - - - 0.00000000005379 77.0
DYD3_k127_1043562_5 - - - - 0.000003511 61.0
DYD3_k127_1043562_6 Thioesterase-like superfamily K02614 - - 0.00002308 50.0
DYD3_k127_1043562_7 - - - - 0.0006251 53.0
DYD3_k127_1054638_0 Anticodon-binding domain of tRNA K01873 - 6.1.1.9 1.734e-242 775.0
DYD3_k127_1054638_1 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 367.0
DYD3_k127_1054638_10 carboxylic acid catabolic process K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 0.00000000000000000000000000000000000000000000000000000001558 222.0
DYD3_k127_1054638_11 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000009412 214.0
DYD3_k127_1054638_12 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.00000000000000000000000000000000000000000000316 184.0
DYD3_k127_1054638_13 glycine D-amino acid K00303 - 1.5.3.1 0.000000000000000000000000000000000000000004794 171.0
DYD3_k127_1054638_14 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 0.000000000000000000000000000000000000003893 149.0
DYD3_k127_1054638_15 DNA binding protein - - - 0.00000000000000000000004845 109.0
DYD3_k127_1054638_16 Rhodanese-like domain - - - 0.0000000000000005489 85.0
DYD3_k127_1054638_17 DNA binding protein K06930 - - 0.000000000000003373 86.0
DYD3_k127_1054638_18 COG2202 FOG PAS PAC domain - - - 0.000000000000004737 81.0
DYD3_k127_1054638_19 protein conserved in archaea - - - 0.00000000000001914 85.0
DYD3_k127_1054638_2 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 364.0
DYD3_k127_1054638_20 two component, sigma54 specific, transcriptional regulator, Fis family K07714,K07715 - - 0.00000000000003498 79.0
DYD3_k127_1054638_21 Pfam Response regulator receiver - - - 0.0000000000001079 76.0
DYD3_k127_1054638_22 TonB dependent receptor - - - 0.000000000396 72.0
DYD3_k127_1054638_23 EamA-like transporter family - - - 0.0000004814 61.0
DYD3_k127_1054638_24 histidine kinase A domain protein K07647,K07678 - 2.7.13.3 0.0000009923 55.0
DYD3_k127_1054638_25 domain protein - - - 0.00003062 55.0
DYD3_k127_1054638_26 PFAM TonB-dependent Receptor K16091 - - 0.0007173 51.0
DYD3_k127_1054638_3 COG1668 ABC-type Na efflux pump, permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005713 318.0
DYD3_k127_1054638_4 ABC-type multidrug transport system, ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006448 265.0
DYD3_k127_1054638_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K02484,K02660,K07653,K07654,K11617 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005515,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0035556,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070297,GO:0070298,GO:0071704,GO:0140096,GO:1901564,GO:1902531,GO:1902532 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000002288 255.0
DYD3_k127_1054638_6 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001077 266.0
DYD3_k127_1054638_7 Involved in regulation of DNA replication K10725 - - 0.00000000000000000000000000000000000000000000000000000000000000000000939 251.0
DYD3_k127_1054638_8 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009108,GO:0009117,GO:0009150,GO:0009165,GO:0009259,GO:0009308,GO:0009310,GO:0009435,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0019805,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034654,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043648,GO:0043650,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0046906,GO:0048037,GO:0051186,GO:0051188,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901135,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606 1.13.11.11 0.00000000000000000000000000000000000000000000000000000000000008806 224.0
DYD3_k127_1054638_9 COG1668 ABC-type Na efflux pump, permease component - - - 0.000000000000000000000000000000000000000000000000000000005481 211.0
DYD3_k127_1057417_0 DEAD DEAH box helicase domain protein K10896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009435 516.0
DYD3_k127_1057417_1 Belongs to the CarB family K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 475.0
DYD3_k127_1057417_10 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.000000000000000000000000000000000002031 142.0
DYD3_k127_1057417_11 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000001143 140.0
DYD3_k127_1057417_12 metallopeptidase activity - - - 0.00000000000000000000000000003869 128.0
DYD3_k127_1057417_13 homolog of PrgY (pheromone shutdown protein) - - - 0.00000000000000000000000000004195 134.0
DYD3_k127_1057417_14 Belongs to the UPF0434 family - - - 0.000000000000000001656 90.0
DYD3_k127_1057417_15 proteolysis - - - 0.0000000000000005281 90.0
DYD3_k127_1057417_16 phytol kinase activity K15892,K18678 - 2.7.1.182,2.7.1.216 0.00000000007142 71.0
DYD3_k127_1057417_17 SCP-2 sterol transfer family - - - 0.000000006287 63.0
DYD3_k127_1057417_18 Pro-kumamolisin, activation domain - - - 0.00000007936 64.0
DYD3_k127_1057417_19 TonB-dependent receptor - - - 0.000198 53.0
DYD3_k127_1057417_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004764 437.0
DYD3_k127_1057417_20 FAD linked oxidases, C-terminal domain - - - 0.0008554 47.0
DYD3_k127_1057417_3 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008723 294.0
DYD3_k127_1057417_4 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001641 275.0
DYD3_k127_1057417_5 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C K06137 - 1.3.3.11 0.0000000000000000000000000000000000000000000000000000000000428 212.0
DYD3_k127_1057417_6 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000008978 216.0
DYD3_k127_1057417_7 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes - - - 0.0000000000000000000000000000000000000000000000003992 196.0
DYD3_k127_1057417_8 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000002434 186.0
DYD3_k127_1057417_9 Functions by promoting the formation of the first peptide bond K03263 - - 0.000000000000000000000000000000000000003209 156.0
DYD3_k127_1074222_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 411.0
DYD3_k127_1074222_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000001898 215.0
DYD3_k127_1074222_2 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000001343 87.0
DYD3_k127_1074222_3 Putative small multi-drug export protein - - - 0.00000007807 64.0
DYD3_k127_110511_0 PFAM short-chain dehydrogenase reductase SDR K15314 - - 1.033e-280 907.0
DYD3_k127_110511_1 carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 3.34e-220 696.0
DYD3_k127_110511_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000001184 168.0
DYD3_k127_110511_3 - - - - 0.0000000001689 74.0
DYD3_k127_115057_0 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03432 GO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0019773,GO:0032991,GO:0044424,GO:0044464,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 328.0
DYD3_k127_115057_1 Shwachman-Bodian-Diamond syndrome (SBDS) protein K14574 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001326 265.0
DYD3_k127_115057_2 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome K03679 GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016180,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0032991,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043144,GO:0043170,GO:0043628,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071034,GO:0071043,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354 - 0.00000000000000000000000000000000000000000000000000000000000000000000003639 248.0
DYD3_k127_115057_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000001211 178.0
DYD3_k127_115057_4 Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'- 5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails K11600 - - 0.000000000000000000000000000000000000000000004512 167.0
DYD3_k127_115057_5 SMART Peptidase A22, presenilin signal peptide - - - 0.0000000000000000000000000000000000000000006841 170.0
DYD3_k127_1182324_0 COGs COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 355.0
DYD3_k127_1182324_1 Electron transfer flavoprotein, beta subunit K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 336.0
DYD3_k127_1182324_2 Electron transfer flavoprotein alpha subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006982 338.0
DYD3_k127_1182324_3 PFAM Short-chain dehydrogenase reductase SDR K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000007721 219.0
DYD3_k127_1182324_4 ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA K06932 GO:0002097,GO:0002101,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016879,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 6.3.4.22 0.000000000000000000000000000000000000000001123 166.0
DYD3_k127_1182324_5 Uncharacterized conserved protein (DUF2203) - - - 0.000000000000000000006305 98.0
DYD3_k127_1187845_0 PFAM Sulfate transporter antisigma-factor antagonist STAS K03321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 485.0
DYD3_k127_1187845_1 Protein of unknown function DUF72 - - - 0.00006763 47.0
DYD3_k127_1236275_0 DHH family - - - 0.000000000000000000000000000000000000000000000002717 187.0
DYD3_k127_1267369_0 ThiS family K21029,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 443.0
DYD3_k127_1267369_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007115 365.0
DYD3_k127_1267369_10 Transcription factor zinc-finger - - - 0.000000001216 68.0
DYD3_k127_1267369_11 Transcriptional regulator - - - 0.000000003869 70.0
DYD3_k127_1267369_13 blue (type 1) copper K00368 - 1.7.2.1 0.000119 49.0
DYD3_k127_1267369_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005562 340.0
DYD3_k127_1267369_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000117 217.0
DYD3_k127_1267369_4 PFAM Enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000005716 196.0
DYD3_k127_1267369_5 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000424 182.0
DYD3_k127_1267369_6 Thioesterase superfamily - - - 0.000000000000000000000000000000000003149 143.0
DYD3_k127_1267369_7 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000005025 155.0
DYD3_k127_1267369_8 Ferredoxin - - - 0.000000000000000000000000000000153 125.0
DYD3_k127_1267369_9 LVIVD repeat-containing protein - - - 0.00000000000000001018 97.0
DYD3_k127_1273140_0 PFAM phosphoesterase, RecJ domain protein K07463 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 310.0
DYD3_k127_1273140_1 pfam abc1 K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 300.0
DYD3_k127_1273140_2 RibD C-terminal domain K14654 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009451,GO:0009987,GO:0016070,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0034641,GO:0036094,GO:0042364,GO:0042726,GO:0042727,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.1.1.302 0.0000000000000000000000000000000000000004792 156.0
DYD3_k127_1273140_3 RDD family - - - 0.0000000002908 70.0
DYD3_k127_1273140_4 - - - - 0.000003866 61.0
DYD3_k127_1274869_0 Zinc carboxypeptidase - - - 0.000000000000000000000009884 117.0
DYD3_k127_1282355_0 PAS fold - - - 0.0000000000000000000000000000000000000000000000000001501 204.0
DYD3_k127_1282355_1 transporter K11021,K16267 - - 0.00000000000003939 78.0
DYD3_k127_1282355_2 NikR C terminal nickel binding domain - - - 0.000000009597 63.0
DYD3_k127_1282355_3 TonB dependent receptor - - - 0.000000009637 67.0
DYD3_k127_1282355_4 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000001752 59.0
DYD3_k127_1296396_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005161 355.0
DYD3_k127_1296396_1 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004994 348.0
DYD3_k127_1296396_2 Belongs to the eIF-2B alpha beta delta subunits family K18237 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.29 0.000000000000000000000000001075 124.0
DYD3_k127_1296396_3 nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module K07060 - - 0.00000000000000000000006039 104.0
DYD3_k127_1296396_4 Carboxypeptidase A2 K01291,K01298,K01300,K04515,K08637,K08779,K08780,K08781 GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0007039,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0019538,GO:0030163,GO:0031012,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0060102,GO:0062023,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 2.7.11.17,3.4.17.1,3.4.17.15,3.4.17.2,3.4.17.20 0.000000000000000003117 98.0
DYD3_k127_1296396_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000003369 68.0
DYD3_k127_1296396_6 - - - - 0.000000004458 62.0
DYD3_k127_1296396_7 Carboxypeptidase regulatory-like domain - - - 0.00001227 57.0
DYD3_k127_1413683_0 Exchanges the guanine residue with 7-cyano-7- deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- loop) of archaeal tRNAs K18779 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008304 372.0
DYD3_k127_1413683_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003539 295.0
DYD3_k127_1413683_2 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000000000000000000000000000006445 148.0
DYD3_k127_1424952_0 Belongs to the NAGSA dehydrogenase family. Type 1 subfamily K00145,K05829 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 393.0
DYD3_k127_1424952_1 acetylornithine and succinylornithine aminotransferase K00821,K05830 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 387.0
DYD3_k127_1424952_2 homocitrate synthase activity K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 345.0
DYD3_k127_1424952_3 PFAM ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp K05827 - 6.3.2.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 325.0
DYD3_k127_1424952_4 Belongs to the acetylglutamate kinase family. LysZ subfamily K05828 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000104 274.0
DYD3_k127_1424952_5 Catalyzes the release of L-lysine from LysW -gamma-L- lysine K05831 - - 0.0000000000000000000000000000000000000000000000000000000000000006246 241.0
DYD3_k127_1424952_6 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000002365 126.0
DYD3_k127_1424952_7 TIGRFAM lysine biosynthesis protein LysW K05826 - - 0.00000000000000336 77.0
DYD3_k127_1424952_8 Transcriptional regulator - - - 0.00000000000005213 85.0
DYD3_k127_1427118_0 protein histidine kinase activity K03320 - - 0.0000000000000000000000000000000000000000000000004562 186.0
DYD3_k127_1427118_1 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000002346 147.0
DYD3_k127_1427118_2 - - - - 0.00000000000000000000000003898 124.0
DYD3_k127_1479294_0 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002446 284.0
DYD3_k127_1479294_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000001654 177.0
DYD3_k127_1604082_0 DHH family - - - 0.00000000000000000000000000000000000000000000000000000000000000000004243 243.0
DYD3_k127_1604082_1 Subtilase family K17734 - - 0.000000003876 70.0
DYD3_k127_1642356_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000594 514.0
DYD3_k127_1642356_1 GTPase of unknown function C-terminal K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 419.0
DYD3_k127_1642356_2 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 385.0
DYD3_k127_1642356_3 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000000000000000000000000002194 216.0
DYD3_k127_1642356_4 PKD domain - - - 0.000000000000000000000000000000000000000007235 179.0
DYD3_k127_1642356_5 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000007053 110.0
DYD3_k127_1642356_6 Belongs to the ompA family - - - 0.000006559 58.0
DYD3_k127_1642356_7 BNR repeat-like domain - - - 0.00002808 57.0
DYD3_k127_1642356_8 - - - - 0.00007244 48.0
DYD3_k127_1644297_0 DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks K03726 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 607.0
DYD3_k127_1644297_1 Peptidase M14, carboxypeptidase A - - - 0.00000000000000000000008031 113.0
DYD3_k127_1644297_2 KEOPS complex Cgi121-like subunit K09119 - - 0.000000274 56.0
DYD3_k127_1707374_0 PFAM carboxyl transferase - - - 1.243e-228 718.0
DYD3_k127_1707374_1 membrane - - - 0.0000000000000000003896 99.0
DYD3_k127_1707374_2 acetyltransferase (GNAT) family - - - 0.0000000000000000009377 93.0
DYD3_k127_1707374_3 TIGRFAM TonB-dependent siderophore receptor K02014 - - 0.0001035 53.0
DYD3_k127_1711039_0 pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 546.0
DYD3_k127_1711039_1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 405.0
DYD3_k127_1711039_2 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 365.0
DYD3_k127_1711039_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 314.0
DYD3_k127_1711039_4 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004488 261.0
DYD3_k127_1711039_5 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001471 249.0
DYD3_k127_1711039_6 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.0000002474 61.0
DYD3_k127_1711039_7 Transport permease protein K01992 - - 0.00007869 56.0
DYD3_k127_1711039_8 PKD domain - - - 0.0001452 53.0
DYD3_k127_1711039_9 Belongs to the peptidase S8 family - - - 0.0004583 52.0
DYD3_k127_1727519_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 442.0
DYD3_k127_1727519_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 436.0
DYD3_k127_1727519_10 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K07342 - - 0.000002469 59.0
DYD3_k127_1727519_11 TonB dependent receptor K02014 - - 0.00001772 56.0
DYD3_k127_1727519_2 PFAM aminotransferase class V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000494 280.0
DYD3_k127_1727519_3 Transporter, CPA2 family - - - 0.00000000000000000000000000000000000000000000000000000001165 214.0
DYD3_k127_1727519_4 Transcription elongation factor Spt5 K02601 - - 0.000000000000000000000000000000000000000001059 164.0
DYD3_k127_1727519_5 Transcriptional regulator K10947 - - 0.00000000000000000000000000000001627 130.0
DYD3_k127_1727519_6 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000002715 143.0
DYD3_k127_1727519_7 membrane protein domain - - - 0.000000000000000000000000000008478 130.0
DYD3_k127_1727519_8 Acylphosphatase K01512 - 3.6.1.7 0.000000000000000000000000002261 113.0
DYD3_k127_1727519_9 Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) K03338 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009987,GO:0016042,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019200,GO:0019637,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044262,GO:0044424,GO:0044464,GO:0046434,GO:0046835,GO:0071704,GO:1901575 2.7.1.92 0.000001204 60.0
DYD3_k127_1758412_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341,K22167 - 1.5.98.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006054 522.0
DYD3_k127_1758412_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 407.0
DYD3_k127_1758412_2 NADH dehydrogenase K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000003345 272.0
DYD3_k127_1758412_3 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K00332 - 1.6.5.3 0.00000000000000000000000000000003491 132.0
DYD3_k127_1758412_4 4Fe-4S dicluster domain K00338 - 1.6.5.3 0.000000000000000000000000009454 117.0
DYD3_k127_1758412_5 NADH ubiquinone oxidoreductase subunit 11 or 4L (Chain K) K00340 - 1.6.5.3 0.0000000000000000009194 93.0
DYD3_k127_1758412_6 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000005916 60.0
DYD3_k127_1758412_7 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339,K05578 - 1.6.5.3 0.00041 49.0
DYD3_k127_1791148_0 COG0471 Di- and tricarboxylate transporters - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006168 404.0
DYD3_k127_1791148_1 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000001316 169.0
DYD3_k127_1791148_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000001917 175.0
DYD3_k127_1791148_3 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000003966 160.0
DYD3_k127_1791148_4 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000009376 81.0
DYD3_k127_1791148_5 Transporter associated domain K11105 GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006884,GO:0008150,GO:0008324,GO:0008361,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0065008,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0090066,GO:0098655,GO:0098660,GO:0098662,GO:0099516,GO:1902600 - 0.0000000007391 71.0
DYD3_k127_1791148_6 Belongs to the SOS response-associated peptidase family - - - 0.0000001573 61.0
DYD3_k127_1791148_7 glyoxalase III activity - - - 0.000008924 57.0
DYD3_k127_1791148_8 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region K21573 - - 0.0001744 53.0
DYD3_k127_1816557_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005104 474.0
DYD3_k127_1816557_1 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007983 297.0
DYD3_k127_1816557_2 Tripartite tricarboxylate transporter TctA family K08971 - - 0.0000000000000000000000000000000000000000000000001108 194.0
DYD3_k127_1816557_3 Uncharacterized protein conserved in archaea (DUF2240) - - - 0.00000473 59.0
DYD3_k127_1816557_4 response regulator, receiver - - - 0.0002764 51.0
DYD3_k127_1816557_5 ergosterol biosynthetic process K02291,K18163 - 2.5.1.32,2.5.1.99 0.0002928 52.0
DYD3_k127_1822254_0 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005782 308.0
DYD3_k127_1822254_1 amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000006106 243.0
DYD3_k127_1822254_2 Enoyl-CoA hydratase carnithine racemase - - - 0.00000000000000000000000000000000000000000000008581 178.0
DYD3_k127_1822254_3 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.00000000000013 77.0
DYD3_k127_1822254_4 cheY-homologous receiver domain K03413 - - 0.0000000000009099 74.0
DYD3_k127_1863769_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1141.0
DYD3_k127_1863769_1 Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 K03243 - - 2.198e-210 670.0
DYD3_k127_1863769_2 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively K06215 - 4.3.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 417.0
DYD3_k127_1863769_3 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000001876 162.0
DYD3_k127_1863769_4 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.000000000000000000001547 108.0
DYD3_k127_1863769_5 - - - - 0.000000000000002537 82.0
DYD3_k127_1863769_6 DNA binding protein - - - 0.000000142 61.0
DYD3_k127_1863769_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.0002138 50.0
DYD3_k127_1863769_8 TonB dependent receptor K02014 - - 0.0002364 52.0
DYD3_k127_197667_0 - - - - 0.000000000000001583 90.0
DYD3_k127_197667_1 protein conserved in archaea - - - 0.000001428 58.0
DYD3_k127_197667_2 - - - - 0.000004706 51.0
DYD3_k127_197667_3 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.00007583 54.0
DYD3_k127_2005650_0 ABC transporter K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 421.0
DYD3_k127_2005650_1 transport, permease protein K01992,K18233 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 408.0
DYD3_k127_2005650_2 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005519 340.0
DYD3_k127_2005650_3 Serine protease with a broad substrate specificity K13276,K17734 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001015 300.0
DYD3_k127_2005650_4 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000001033 237.0
DYD3_k127_2005650_5 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000001189 206.0
DYD3_k127_2005650_6 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000003215 209.0
DYD3_k127_2005650_7 PFAM BNR Asp-box repeat - - - 0.0000000000000000000000000001658 128.0
DYD3_k127_2005650_8 Transcriptional regulator K07332 - - 0.0000000001839 69.0
DYD3_k127_2080849_0 Belongs to the catalase family K03781 - 1.11.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 497.0
DYD3_k127_2080849_1 domain protein K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000005065 229.0
DYD3_k127_2080849_2 Domain of unknown function (DUF2935) - - - 0.00000000000000000000000000000000000000000000000000001807 200.0
DYD3_k127_2080849_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000001864 142.0
DYD3_k127_2080849_4 - - - - 0.0000007962 60.0
DYD3_k127_2125415_0 NADPH quinone reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 299.0
DYD3_k127_2125415_1 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006166 281.0
DYD3_k127_2125415_2 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050790,GO:0050896,GO:0051340,GO:0051351,GO:0051716,GO:0065007,GO:0065009,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000005132 223.0
DYD3_k127_2125415_3 Fic/DOC family - - - 0.00000000000003694 74.0
DYD3_k127_2233929_0 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004361 422.0
DYD3_k127_2233929_1 Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA K04801 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 414.0
DYD3_k127_2233929_10 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.000000000000000000001944 101.0
DYD3_k127_2233929_11 COG3425 3-hydroxy-3-methylglutaryl CoA synthase K01641,K07068 - 2.3.3.10 0.0000000000000000000451 104.0
DYD3_k127_2233929_12 - - - - 0.0000000000001948 81.0
DYD3_k127_2233929_13 PFAM PAP2 superfamily K19302 - 3.6.1.27 0.00000000001573 76.0
DYD3_k127_2233929_14 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.0000000003495 62.0
DYD3_k127_2233929_2 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007368 415.0
DYD3_k127_2233929_3 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003566 293.0
DYD3_k127_2233929_4 Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase K07559 - - 0.00000000000000000000000000000000000000000000000000000000000000004855 230.0
DYD3_k127_2233929_5 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.00000000000000000000000000000000000000000000000000000000002241 231.0
DYD3_k127_2233929_6 eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA K03238 - - 0.00000000000000000000000000000000000000000000000000001964 196.0
DYD3_k127_2233929_7 TIGRFAM RNA methyltransferase, TrmH family, group 1 K02533 - - 0.00000000000000000000000000000000000000000002093 172.0
DYD3_k127_2233929_8 - - - - 0.000000000000000000000000000000000000005882 153.0
DYD3_k127_2233929_9 Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs K06176 - 5.4.99.27 0.000000000000000000000000000000003712 134.0
DYD3_k127_2242992_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K22503 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009874 453.0
DYD3_k127_2242992_1 Beta-eliminating lyase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 351.0
DYD3_k127_2242992_2 Pfam:DUF137 K09722 - 6.3.2.36 0.00000000000000000000000000000000000000000000000000000000000000000000001028 252.0
DYD3_k127_2242992_3 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000008237 175.0
DYD3_k127_2242992_4 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000007337 159.0
DYD3_k127_2242992_5 protein conserved in archaea - - - 0.0000000000000002391 94.0
DYD3_k127_2242992_6 glucose sorbosone - - - 0.00000000002188 74.0
DYD3_k127_2242992_7 Putative small multi-drug export protein - - - 0.00000004938 64.0
DYD3_k127_2242992_8 Putative transmembrane protein (PGPGW) - - - 0.00001566 52.0
DYD3_k127_2300015_0 Alpha-2-Macroglobulin K06894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 481.0
DYD3_k127_2300015_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.000000000000000000000000000000000000000000000000005219 204.0
DYD3_k127_2300286_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 7.414e-211 668.0
DYD3_k127_2300286_1 DNA polymerase X family K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 467.0
DYD3_k127_2300286_10 HxlR-like helix-turn-helix - - - 0.000000000000000001471 90.0
DYD3_k127_2300286_11 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000001725 78.0
DYD3_k127_2300286_12 Iron-binding zinc finger CDGSH type K05710 - - 0.000000000008341 68.0
DYD3_k127_2300286_13 TIGRFAM Mg chelatase, subunit ChlI K07391 - - 0.000002042 60.0
DYD3_k127_2300286_14 TonB-dependent receptor plug - - - 0.00001026 57.0
DYD3_k127_2300286_15 von Willebrand factor type A domain - - - 0.00001716 58.0
DYD3_k127_2300286_16 SpoVT / AbrB like domain - - - 0.0001591 47.0
DYD3_k127_2300286_2 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 449.0
DYD3_k127_2300286_3 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 358.0
DYD3_k127_2300286_4 Belongs to the peptidase S16 family K04076 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000006917 264.0
DYD3_k127_2300286_5 GTP cyclohydrolase II K01497,K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000003098 231.0
DYD3_k127_2300286_6 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000002265 228.0
DYD3_k127_2300286_7 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000001743 154.0
DYD3_k127_2300286_8 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domain of GcvH, an intermediate carrier during protein lipoylation K03800 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 6.3.1.20 0.0000000000000000000000000000006549 130.0
DYD3_k127_2300286_9 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000000000000000000001004 116.0
DYD3_k127_231443_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K03330 - 6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003812 499.0
DYD3_k127_231443_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate K09482 - 6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 378.0
DYD3_k127_231443_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000002605 188.0
DYD3_k127_231443_3 haloacid dehalogenase-like hydrolase - - - 0.00000000000002155 74.0
DYD3_k127_231443_4 - - - - 0.000000003114 61.0
DYD3_k127_231443_5 SdrD B-like domain - - - 0.00001017 57.0
DYD3_k127_2322964_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 1.512e-243 780.0
DYD3_k127_2322964_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001081 280.0
DYD3_k127_2322964_2 Ribosomal protein S8e K02995 GO:0000462,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904 - 0.00000000000000000000000000000005016 138.0
DYD3_k127_2322964_3 Urate oxidase N-terminal - - - 0.00000000000000000000000002666 119.0
DYD3_k127_2322964_4 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000386 104.0
DYD3_k127_2322964_5 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000003893 84.0
DYD3_k127_2322964_6 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP K03105 - - 0.0000000004524 64.0
DYD3_k127_2322964_7 DNA binding protein - - - 0.00000005795 65.0
DYD3_k127_2322964_8 Alpha/beta hydrolase family - - - 0.0000003049 59.0
DYD3_k127_2330339_0 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 330.0
DYD3_k127_2330339_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002266 292.0
DYD3_k127_2330339_2 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002445 250.0
DYD3_k127_2330339_3 exporters of the RND superfamily - - - 0.00000000000000000000000001532 127.0
DYD3_k127_2330339_4 Putative glutamine amidotransferase - - - 0.0000000000000000000000006141 113.0
DYD3_k127_2330339_5 DNA polymerase elongation subunit (Family B) K02319 - 2.7.7.7 0.0000000000000000000003895 111.0
DYD3_k127_2330339_6 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.0000000009086 66.0
DYD3_k127_2330339_7 CarboxypepD_reg-like domain - - - 0.000003906 58.0
DYD3_k127_2330339_8 histidine kinase, dimerisation and phosphoacceptor region - - - 0.0007393 51.0
DYD3_k127_2402944_0 Copper resistance protein CopC K14166 - - 0.000000000000000000000000001717 128.0
DYD3_k127_2402944_1 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000002468 82.0
DYD3_k127_2402944_2 protein conserved in archaea - - - 0.0000002189 63.0
DYD3_k127_2405126_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 4.336e-284 899.0
DYD3_k127_2405126_1 Belongs to the peptidase S16 family K04076 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 588.0
DYD3_k127_2405126_2 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007258 475.0
DYD3_k127_2405126_3 COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain K07557 - 2.6.1.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001075 300.0
DYD3_k127_2405126_4 Elongator protein 3, MiaB family, Radical SAM K06936 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008547 287.0
DYD3_k127_2405126_5 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.000000000000000000000000000000000000000002208 180.0
DYD3_k127_2405126_6 TonB dependent receptor K02014 - - 0.0001304 54.0
DYD3_k127_2446487_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 469.0
DYD3_k127_2446487_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 364.0
DYD3_k127_2446487_2 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000006736 189.0
DYD3_k127_2446487_3 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000002049 184.0
DYD3_k127_2446487_4 Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits K03236 - - 0.0000000000000000000000000000000001096 136.0
DYD3_k127_2446487_5 Protein of unknown function DUF86 - - - 0.000000002622 63.0
DYD3_k127_2446487_6 PFAM DNA polymerase beta domain protein region K07075 - - 0.0000007319 61.0
DYD3_k127_2455628_0 ATPase involved in replication control, Cdc46 Mcm family K10726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 604.0
DYD3_k127_2455628_1 PFAM Binding-protein-dependent transport system inner membrane component K02063 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006853 302.0
DYD3_k127_2455628_2 Bacterial extracellular solute-binding protein K02064 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008401 250.0
DYD3_k127_2455628_3 Belongs to the ABC transporter superfamily K02052,K02062 - - 0.00000000000000000000000000000000000000000000000000000000000000002388 243.0
DYD3_k127_2455628_4 Thiamine-phosphate synthase K22206 - - 0.0000000000000000000000000000000007938 142.0
DYD3_k127_2455628_5 Protein of unknown function (DUF424) K09148 - - 0.0000000000000000000000008831 106.0
DYD3_k127_2474792_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 455.0
DYD3_k127_2474792_1 ATPase associated with various cellular activities K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008252 327.0
DYD3_k127_2474792_2 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000009676 105.0
DYD3_k127_2474792_3 PFAM PKD domain containing protein - - - 0.000002292 58.0
DYD3_k127_2474792_4 Carboxypeptidase regulatory-like domain - - - 0.00006627 54.0
DYD3_k127_2474835_0 Belongs to the peptidase S16 family K04076 - 3.4.21.53 2.239e-252 798.0
DYD3_k127_2474835_1 Mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000005738 169.0
DYD3_k127_2474835_2 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000001919 109.0
DYD3_k127_2474835_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000009656 67.0
DYD3_k127_2474835_4 SpoVT / AbrB like domain - - - 0.0004455 46.0
DYD3_k127_2485441_0 Binds the lower part of the 30S subunit head K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000837 250.0
DYD3_k127_2485441_1 Belongs to the eukaryotic ribosomal protein eS4 family K02987 - - 0.0000000000000000000000000000000000000000000000000000000001831 213.0
DYD3_k127_2485441_10 This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02890 - - 0.00000000000000000000001055 104.0
DYD3_k127_2485441_11 Ribosomal L29 protein K02904 - - 0.000000000000001512 82.0
DYD3_k127_2485441_12 binds to the 23S rRNA K02885 - - 0.0000000000001101 83.0
DYD3_k127_2485441_13 Binds 16S rRNA, required for the assembly of 30S particles K02954 - - 0.000000000002093 68.0
DYD3_k127_2485441_14 Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends K03538 - 3.1.26.5 0.000000001465 64.0
DYD3_k127_2485441_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000004839 190.0
DYD3_k127_2485441_3 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000002156 196.0
DYD3_k127_2485441_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000003853 188.0
DYD3_k127_2485441_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000005185 177.0
DYD3_k127_2485441_6 Belongs to the SUI1 family K03113 - - 0.0000000000000000000000000000000000000128 146.0
DYD3_k127_2485441_7 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001238 138.0
DYD3_k127_2485441_8 Belongs to the eukaryotic ribosomal protein eL32 family K02912 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000007332 127.0
DYD3_k127_2485441_9 Located at the polypeptide exit tunnel on the outside of the subunit K02895 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000003917 116.0
DYD3_k127_2522768_0 LAO AO transport system K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 334.0
DYD3_k127_2522768_1 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 299.0
DYD3_k127_2522768_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000502 207.0
DYD3_k127_2522768_3 PFAM cobalamin B12-binding domain protein K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000001309 196.0
DYD3_k127_2522768_4 PFAM Maf family protein K06287 - - 0.000000000000000000000000000000000000000411 156.0
DYD3_k127_2522768_5 ABC-2 family transporter protein K01992 - - 0.00000000000000000368 93.0
DYD3_k127_2522768_6 Transcriptional regulator - - - 0.000002368 60.0
DYD3_k127_2522768_7 Has ATPase and non-specific DNA-binding activities K07456 - - 0.000009793 48.0
DYD3_k127_2578869_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000004919 240.0
DYD3_k127_2578869_1 O-methyltransferase - - - 0.000000000000000000000000000000000001005 147.0
DYD3_k127_2578869_2 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000002194 119.0
DYD3_k127_2578869_3 Antibiotic biosynthesis monooxygenase - - - 0.000000000001678 72.0
DYD3_k127_2578869_4 PFAM Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000005993 64.0
DYD3_k127_2578869_5 Antibiotic biosynthesis monooxygenase - - - 0.0008962 48.0
DYD3_k127_2597598_0 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 381.0
DYD3_k127_2597598_1 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000001896 175.0
DYD3_k127_2597598_2 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000004231 146.0
DYD3_k127_2597598_3 NACHT domain - - - 0.00000009778 65.0
DYD3_k127_2597598_4 TonB-dependent receptor - - - 0.000003674 58.0
DYD3_k127_2624761_0 PFAM aminotransferase class I and II K05825 - - 0.0000000000000000000000000000001527 128.0
DYD3_k127_2624761_1 sodium:proton antiporter activity K05564,K11105 - - 0.00000000000000000000000000000217 129.0
DYD3_k127_2624761_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000009091 115.0
DYD3_k127_2644328_0 Belongs to the peptidase S16 family K04076 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 589.0
DYD3_k127_2644328_1 Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO K18931 GO:0000166,GO:0003674,GO:0003824,GO:0004645,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006195,GO:0006196,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009125,GO:0009126,GO:0009128,GO:0009150,GO:0009154,GO:0009158,GO:0009161,GO:0009166,GO:0009167,GO:0009169,GO:0009259,GO:0009261,GO:0009987,GO:0016208,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0042301,GO:0042737,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576 2.4.2.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 497.0
DYD3_k127_2644328_2 Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3- phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase K01601 - 4.1.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 402.0
DYD3_k127_2644328_3 Belongs to the eIF-2B alpha beta delta subunits family K18237 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.29 0.0000000000000000000000000000000000000000000000000000000004181 212.0
DYD3_k127_2644328_4 - - - - 0.000000000000000000000000000000000007345 155.0
DYD3_k127_2644328_5 Iron dependent K03709 - - 0.00000000000000000000001446 105.0
DYD3_k127_2644328_6 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000643 60.0
DYD3_k127_2675963_0 Male sterility protein K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 367.0
DYD3_k127_2675963_1 COG0451 Nucleoside-diphosphate-sugar epimerases K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000003786 229.0
DYD3_k127_2675963_2 dTDP-4-dehydrorhamnose 3,5-epimerase activity K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000008713 211.0
DYD3_k127_2675963_3 Polysaccharide biosynthesis protein K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000001091 183.0
DYD3_k127_2675963_4 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000001297 81.0
DYD3_k127_2675963_5 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.000000001516 68.0
DYD3_k127_2675963_6 dTDP-4-dehydrorhamnose 3,5-epimerase activity K01790 - 5.1.3.13 0.00000294 51.0
DYD3_k127_2690753_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001405 284.0
DYD3_k127_2690753_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000001326 176.0
DYD3_k127_2690753_2 glyoxalase III activity - - - 0.000000000000000000000001064 109.0
DYD3_k127_2690753_3 PFAM nitrogen-fixing NifU domain protein - - - 0.0000000000000000000004906 97.0
DYD3_k127_2690753_4 - - - - 0.00000000002473 76.0
DYD3_k127_2690753_5 M20 M25 M40 family peptidase - - - 0.0000000001523 74.0
DYD3_k127_2690753_6 PKD domain - - - 0.0000000006833 72.0
DYD3_k127_2690753_7 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000001498 70.0
DYD3_k127_2690753_8 Domain of unknown function (DUF4332) - - - 0.00000006263 64.0
DYD3_k127_2690753_9 Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently - - - 0.00000837 55.0
DYD3_k127_2765608_0 cell wall anchor domain - - - 0.00000000155 71.0
DYD3_k127_2765608_1 Reeler domain - - - 0.00001142 55.0
DYD3_k127_278592_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703,K16792 - 4.2.1.114,4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 481.0
DYD3_k127_278592_1 Isocitrate/isopropylmalate dehydrogenase K00052,K10978 GO:0006082,GO:0006575,GO:0006732,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0019297,GO:0019298,GO:0019752,GO:0032787,GO:0042398,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576 1.1.1.85,1.1.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 301.0
DYD3_k127_278592_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000001544 187.0
DYD3_k127_278592_3 Diadenylate cyclase - - - 0.00000000000000000000000000000159 130.0
DYD3_k127_278592_4 Bacterio-opsin activator HTH domain-containing protein K06930 - - 0.0001428 52.0
DYD3_k127_278592_5 amino acid transport K02029,K02030 - - 0.0007985 50.0
DYD3_k127_2794480_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 416.0
DYD3_k127_2794480_1 DEAD DEAH box helicase K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 389.0
DYD3_k127_2794480_10 ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA K06932 - 6.3.4.22 0.00000000006969 73.0
DYD3_k127_2794480_11 Glycosyltransferase WbsX - - - 0.000000002678 70.0
DYD3_k127_2794480_12 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.0000006328 63.0
DYD3_k127_2794480_13 Universal stress protein family - - - 0.00008333 51.0
DYD3_k127_2794480_2 Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 349.0
DYD3_k127_2794480_3 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000008186 215.0
DYD3_k127_2794480_4 Ribosomal protein S8e K02995 GO:0000462,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904 - 0.00000000000000000000000000000000000001977 147.0
DYD3_k127_2794480_5 pfkB family carbohydrate kinase K22026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008906,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019200,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046835,GO:0046872,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.1.213,2.7.1.73 0.0000000000000000000000000000000002828 143.0
DYD3_k127_2794480_6 methyltransferase - - - 0.0000000000000000000000000000000004327 151.0
DYD3_k127_2794480_7 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000000000000003157 130.0
DYD3_k127_2794480_8 SnoaL-like polyketide cyclase - - - 0.0000000000000000000000001635 111.0
DYD3_k127_2794480_9 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP K03105 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006605,GO:0006612,GO:0006613,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0015031,GO:0015833,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0090150,GO:0097159,GO:1901363 - 0.000000000001102 76.0
DYD3_k127_2803548_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003257 295.0
DYD3_k127_2803548_1 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000245 280.0
DYD3_k127_2803548_2 EamA-like transporter family - - - 0.00000000000000000000000000000000002594 146.0
DYD3_k127_2803548_3 PFAM metallophosphoesterase K06953 - - 0.00000000000000000000000000000000003368 147.0
DYD3_k127_2803548_4 Contacts the emerging nascent chain on the ribosome K03626 - - 0.00000000000000003234 96.0
DYD3_k127_2803548_5 exo-alpha-(2->6)-sialidase activity - - - 0.000009408 54.0
DYD3_k127_2803548_6 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.00001147 57.0
DYD3_k127_2827475_0 COG0733 Na -dependent transporters of the SNF family K03308 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009968 269.0
DYD3_k127_2827475_1 Belongs to the RimK family K05844 - - 0.000000000000000000000000000000000000000000000000116 186.0
DYD3_k127_2827475_2 YbhB YbcL family protein K06910 - - 0.0000000000000000000000000000000000000000001549 164.0
DYD3_k127_2827475_3 repeat protein - - - 0.000003461 60.0
DYD3_k127_2827475_4 Catalyzes the transfer of an acetyl group from acetyl- CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring K18816 GO:0003674,GO:0003824,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0034069,GO:0042221,GO:0046677,GO:0047663,GO:0050896 2.3.1.82 0.00007258 52.0
DYD3_k127_2827659_0 Subtilase family K17734 - - 0.0000000000000000000000000000000000000000000000000000163 213.0
DYD3_k127_2827659_1 Subtilase family K17734 - - 0.00000000000000000000000000000000002534 139.0
DYD3_k127_2827659_2 - - - - 0.0000000000000000000000000000000003816 143.0
DYD3_k127_2827659_3 - - - - 0.00000003577 66.0
DYD3_k127_2828438_0 Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules K04483 GO:0000150,GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0033554,GO:0034622,GO:0034641,GO:0042148,GO:0042623,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0045003,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 421.0
DYD3_k127_2828438_1 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002309 280.0
DYD3_k127_2828438_2 Calcineurin-like phosphoesterase K14379 - 3.1.3.2 0.0000000000000000000000000000000000000000000000000000000000001341 228.0
DYD3_k127_2828438_3 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000122 211.0
DYD3_k127_2828438_4 Integral membrane protein DUF92 - - - 0.000000000000000000000000000454 125.0
DYD3_k127_2828438_5 Transcriptional regulator - - - 0.00000000000000009916 89.0
DYD3_k127_2828438_6 Purple acid Phosphatase, N-terminal domain - - - 0.0000000000000005176 91.0
DYD3_k127_2828438_7 LVIVD repeat - - - 0.0000000001028 73.0
DYD3_k127_2828438_8 transport - - - 0.00006029 54.0
DYD3_k127_2841370_0 Pirin K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 364.0
DYD3_k127_2841370_1 RNA-3'-phosphate cyclase activity K01974 GO:0003674,GO:0003824,GO:0003963,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009975,GO:0016874,GO:0016886,GO:0044424,GO:0044464,GO:0140098 6.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000009582 264.0
DYD3_k127_2841370_2 elongation factor Tu - - - 0.000000000000000000000000000000000000003848 158.0
DYD3_k127_2841370_3 PFAM thymidylate kinase K00943 - 2.7.4.9 0.0000000000000000000000000000001709 130.0
DYD3_k127_2841370_4 Mannosyltransferase (PIG-V) - - - 0.000000000000000000002235 107.0
DYD3_k127_2841370_5 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000002557 82.0
DYD3_k127_2841370_6 LVIVD repeat - - - 0.000000001398 71.0
DYD3_k127_2848715_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 512.0
DYD3_k127_2848715_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000002006 287.0
DYD3_k127_2848715_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001032 265.0
DYD3_k127_2848715_3 Peptidase C26 K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000004656 224.0
DYD3_k127_2848715_4 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000003158 209.0
DYD3_k127_2848715_5 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000007512 197.0
DYD3_k127_2848715_6 Belongs to the TrpC family K01609,K13498 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000004173 141.0
DYD3_k127_2969178_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 316.0
DYD3_k127_2969178_1 Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity) K01170 - 4.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000001639 237.0
DYD3_k127_2969178_2 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.000000000000000000000000000000000000000000000000000000000008617 222.0
DYD3_k127_2969178_3 THIamine pyrophosphokinase K00949 - 2.7.6.2 0.00000000000000000001995 102.0
DYD3_k127_2969178_4 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000753 53.0
DYD3_k127_2978028_0 Helix-hairpin-helix motif K07572 - - 0.000000000000000000000000000000000000000000000000000000000000268 217.0
DYD3_k127_2978028_1 Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs K07583 - 5.4.99.25 0.00000000000000000000000000000000000000000000000001169 187.0
DYD3_k127_2978028_2 Belongs to the eukaryotic ribosomal protein eL21 family K02889 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000002505 102.0
DYD3_k127_2978028_3 PFAM RNA polymerase Rpb4 K03051 - 2.7.7.6 0.000000000004641 72.0
DYD3_k127_2978028_4 Carboxypeptidase regulatory-like domain - - - 0.0001385 53.0
DYD3_k127_3059335_0 Transport of potassium into the cell K03549 - - 9.884e-204 658.0
DYD3_k127_3059335_1 threonine K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 400.0
DYD3_k127_3059335_10 COG0608 Single-stranded DNA-specific exonuclease K07463 - - 0.000000000000007043 89.0
DYD3_k127_3059335_11 - - - - 0.0003382 52.0
DYD3_k127_3059335_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000006723 255.0
DYD3_k127_3059335_3 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000001518 185.0
DYD3_k127_3059335_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.0000000000000000000000000000000000000000000000003516 181.0
DYD3_k127_3059335_5 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000003137 192.0
DYD3_k127_3059335_6 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000001776 130.0
DYD3_k127_3059335_7 Protein of unknown function (DUF3088) - - - 0.0000000000000000000000001954 109.0
DYD3_k127_3059335_8 PFAM periplasmic binding protein - - - 0.000000000000000002153 93.0
DYD3_k127_3059335_9 SNARE associated Golgi protein - - - 0.0000000000000000118 94.0
DYD3_k127_3072188_0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B K02823 - - 0.0000000000000000000000000000000000000000000000000000000009347 213.0
DYD3_k127_3072188_1 Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) K07732 - 2.7.1.161 0.0000000000000000000000000000000000000000000000000000007549 200.0
DYD3_k127_3072188_2 Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs K07254 GO:0001510,GO:0002128,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.206 0.0000000000000000000000000000000000000000000000004653 188.0
DYD3_k127_3072188_3 nucleotide metabolic process - - - 0.000000000000000000000000000000000000001998 156.0
DYD3_k127_3072188_4 Lrp/AsnC ligand binding domain - - - 0.000000000000000000000000000004776 123.0
DYD3_k127_3072188_5 PQQ-like domain K05889 - 1.1.2.6 0.00000000000000000000000000007299 131.0
DYD3_k127_3072188_6 Copper binding proteins, plastocyanin/azurin family - - - 0.0000000002749 72.0
DYD3_k127_3072188_7 Carboxypeptidase regulatory-like domain - - - 0.00001129 57.0
DYD3_k127_3072188_8 - - - - 0.0007284 46.0
DYD3_k127_3094940_0 Glycine D-amino acid oxidase (deaminating) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004376 517.0
DYD3_k127_3094940_1 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000003029 225.0
DYD3_k127_3094940_2 serine threonine protein kinase K07178 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000001438 207.0
DYD3_k127_3094940_3 K homology RNA-binding domain K06961 - - 0.00000000000000000000000000000000000000000000000008978 184.0
DYD3_k127_3094940_4 domain protein - - - 0.0000007885 61.0
DYD3_k127_3094940_5 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 - 0.0003345 45.0
DYD3_k127_3094940_6 transcriptional regulator K07721 - - 0.0005913 44.0
DYD3_k127_3115824_0 Hydroxymethylglutaryl-CoA reductase, degradative K00054 - 1.1.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 405.0
DYD3_k127_3115824_1 phenylalanine-tRNA ligase activity K01890 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 411.0
DYD3_k127_3115824_2 PFAM aspartate ornithine carbamoyltransferase carbamoyl-P binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 370.0
DYD3_k127_3115824_3 PFAM Sodium hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001046 254.0
DYD3_k127_3115824_4 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000096 221.0
DYD3_k127_3115824_5 Involved in allosteric regulation of aspartate carbamoyltransferase K00610 - - 0.0000000000000000000000000000000000000001044 169.0
DYD3_k127_3115824_6 - - - - 0.0000000002459 73.0
DYD3_k127_3115824_7 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region K21573 - - 0.00000178 62.0
DYD3_k127_3173074_0 HWE histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003123 308.0
DYD3_k127_3173074_1 protein histidine kinase activity K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001322 267.0
DYD3_k127_3173074_2 HWE histidine kinase - - - 0.000000000000000000000000000000000000000000002341 191.0
DYD3_k127_3173074_3 GAF domain - - - 0.0000000000000000000000000000000007251 153.0
DYD3_k127_3173074_4 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000002079 132.0
DYD3_k127_3173074_5 cheY-homologous receiver domain - - - 0.000000000000000000001055 100.0
DYD3_k127_3191310_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003111 507.0
DYD3_k127_3191310_1 Belongs to the UPF0219 family K01641 - 2.3.3.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 434.0
DYD3_k127_3191310_2 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 426.0
DYD3_k127_3191310_3 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000000000000000000000002938 196.0
DYD3_k127_3191310_4 Exchanges the guanine residue with 7-cyano-7- deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- loop) of archaeal tRNAs K18779 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.48 0.00000000000000000000000000000000000000000319 164.0
DYD3_k127_3191310_5 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000000000002908 171.0
DYD3_k127_3191310_6 protein conserved in archaea - - - 0.00000000001755 75.0
DYD3_k127_3191310_7 protein conserved in archaea - - - 0.000001332 60.0
DYD3_k127_3191310_8 universal stress protein - - - 0.0001343 50.0
DYD3_k127_3214013_0 PFAM tRNA synthetase, class II (D, K and N) K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 440.0
DYD3_k127_3214013_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001918 287.0
DYD3_k127_3214013_2 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003539 254.0
DYD3_k127_3214013_3 acetyltransferase K11206 - - 0.00000000000000000000000000000000000000000001375 171.0
DYD3_k127_3214013_4 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000005775 141.0
DYD3_k127_3214013_5 Thioesterase superfamily - - - 0.0000000000001328 77.0
DYD3_k127_3214013_6 Glutamine amido-transferase - - - 0.000000000005515 75.0
DYD3_k127_3232615_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 297.0
DYD3_k127_3232615_1 Transketolase, pyridine binding domain protein K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002095 269.0
DYD3_k127_3243794_0 glutamine synthetase K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 482.0
DYD3_k127_3243794_1 AAA domain K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.00000000000000000000000000000000000000000000000003712 188.0
DYD3_k127_3243794_2 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000000004204 163.0
DYD3_k127_3243794_3 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000006679 141.0
DYD3_k127_3243794_4 Integral membrane protein DUF106 - - - 0.0000000000000000000000000003325 123.0
DYD3_k127_3243794_5 transcription regulator activity - - - 0.00000000000000000000000005895 118.0
DYD3_k127_3243794_6 membrane - - - 0.00000005098 60.0
DYD3_k127_3243794_7 Domain of unknown function (DUF4870) - - - 0.00001278 53.0
DYD3_k127_3253200_0 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000000000000005631 171.0
DYD3_k127_3253200_1 RNA-binding protein of the translin family K07477 - - 0.0000000000000000000002537 112.0
DYD3_k127_3253200_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000004525 77.0
DYD3_k127_3253200_3 Belongs to the Nudix hydrolase family - - - 0.000000000001072 77.0
DYD3_k127_3253200_4 Putative small multi-drug export protein - - - 0.00000000653 68.0
DYD3_k127_3253200_5 - - - - 0.00000005927 61.0
DYD3_k127_3253200_6 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 GO:0003674,GO:0003824,GO:0004596,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031365,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.128 0.0000114 57.0
DYD3_k127_328881_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 354.0
DYD3_k127_328881_1 catechol 2,3-dioxygenase activity K07104 - 1.13.11.2 0.000000000000000000000000000000000000000000000000000000000000000000001656 238.0
DYD3_k127_328881_2 methyltransferase - - - 0.000000000000000000000000001536 123.0
DYD3_k127_328881_3 protein conserved in archaea - - - 0.000000000000000009404 98.0
DYD3_k127_328881_4 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000000004677 72.0
DYD3_k127_328881_5 membrane K08976 - - 0.0003153 51.0
DYD3_k127_3299078_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000921 173.0
DYD3_k127_3299078_1 - - - - 0.0000000000000000000000006038 121.0
DYD3_k127_3299078_2 protein conserved in archaea - - - 0.0000000000000006154 88.0
DYD3_k127_3299078_3 TfoX N-terminal domain - - - 0.00000000003844 70.0
DYD3_k127_3299078_4 LVIVD repeat - - - 0.00000004536 66.0
DYD3_k127_3299078_5 CAAX protease self-immunity K07052 - - 0.00000008952 63.0
DYD3_k127_3299078_6 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000002703 55.0
DYD3_k127_3299078_7 Transcriptional regulator, ArsR family - - - 0.000000584 62.0
DYD3_k127_3353296_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003055 541.0
DYD3_k127_3353296_1 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000005955 235.0
DYD3_k127_3353296_2 X-Pro dipeptidyl-peptidase domain protein K06978 - - 0.00000000000000000000000000000000000000002436 175.0
DYD3_k127_3353296_3 Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 - 5.3.3.2 0.000945 43.0
DYD3_k127_3415406_0 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 380.0
DYD3_k127_3415406_1 Type II/IV secretion system protein K07332 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001185 260.0
DYD3_k127_3415406_2 PFAM type II secretion system protein E K07332 - - 0.00000000000000000000000000000000000000000000000000000000000000001582 232.0
DYD3_k127_3415406_3 Type II secretion system (T2SS), protein F K07333 - - 0.00000000000000000000000000000000000000000000001566 181.0
DYD3_k127_3415406_4 Type II secretion system (T2SS), protein F K07333 - - 0.000000000000000000000000000000000000000001414 176.0
DYD3_k127_3415406_5 PFAM Response regulator receiver domain K03413 - - 0.00000000000000000192 90.0
DYD3_k127_3415406_6 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000001169 80.0
DYD3_k127_3415406_7 PFAM PKD domain containing protein - - - 0.0004667 54.0
DYD3_k127_3421416_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 373.0
DYD3_k127_3421416_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000002066 238.0
DYD3_k127_3421416_2 endonuclease III K01247 - 3.2.2.21 0.000000000000000000000000000000000002015 152.0
DYD3_k127_3421416_3 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000001206 136.0
DYD3_k127_3421416_4 exo-alpha-(2->6)-sialidase activity - - - 0.0000006336 61.0
DYD3_k127_3511173_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004099 395.0
DYD3_k127_3511173_1 4Fe-4S single cluster domain K07129 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 314.0
DYD3_k127_3511173_10 TonB-dependent receptor - - - 0.000001061 60.0
DYD3_k127_3511173_11 Carboxypeptidase regulatory-like domain - - - 0.000003674 58.0
DYD3_k127_3511173_12 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0003977 53.0
DYD3_k127_3511173_2 Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication K04802 - - 0.000000000000000000000000000000000000000000000000000000000000000000002822 243.0
DYD3_k127_3511173_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000001015 243.0
DYD3_k127_3511173_4 Carbon-nitrogen hydrolase K18540 - 3.5.1.100 0.000000000000000000000000000000000000000000000000000003347 208.0
DYD3_k127_3511173_5 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.0000000000000000000000000000000000000000000000001689 190.0
DYD3_k127_3511173_6 Diphthamide synthase K06927 - 6.3.1.14 0.0000000000000000000000000000000000000000001372 167.0
DYD3_k127_3511173_7 transcription regulator activity - - - 0.000000000000000000000000000000000000003167 151.0
DYD3_k127_3511173_8 Belongs to the archaeal rpoM eukaryotic RPA12 RPB9 RPC11 RNA polymerase family K03057 - - 0.00000000000000000001379 98.0
DYD3_k127_3511173_9 phosphoribosyl-ATP pyrophosphohydrolase - - - 0.0000009884 61.0
DYD3_k127_3569304_0 Cell division protein 48, CDC48, domain 2 K13525 - - 8.048e-236 741.0
DYD3_k127_3569304_1 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000009242 260.0
DYD3_k127_3569304_10 - - - - 0.00000000000001052 87.0
DYD3_k127_3569304_11 Domain of unknown function (DUF305) - - - 0.0000000003386 72.0
DYD3_k127_3569304_12 repeat protein - - - 0.0000001637 64.0
DYD3_k127_3569304_13 NfeD-like C-terminal, partner-binding - - - 0.00001418 55.0
DYD3_k127_3569304_2 conserved protein UCP033563 - - - 0.000000000000000000000000000000000000000000000000000000000000001307 238.0
DYD3_k127_3569304_3 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 - 4.3.3.6 0.0000000000000000000000000000000000000000000001923 176.0
DYD3_k127_3569304_4 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000002179 176.0
DYD3_k127_3569304_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000001921 175.0
DYD3_k127_3569304_6 Archaeal holliday junction resolvase (hjc) - - - 0.000000000000000000000000000000000000000000007825 169.0
DYD3_k127_3569304_7 Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity K03763 - 2.7.7.7 0.00000000000000000000000000886 119.0
DYD3_k127_3569304_8 - - - - 0.000000000000000000005707 97.0
DYD3_k127_3569304_9 - - - - 0.0000000000000000001361 102.0
DYD3_k127_3575603_0 DEAD DEAH box helicase domain protein K03724 - - 6.038e-231 746.0
DYD3_k127_3575603_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 351.0
DYD3_k127_3575603_10 - - - - 0.00001662 55.0
DYD3_k127_3575603_2 Major facilitator superfamily K19576 - - 0.000000000000000000000000000000000000000000000001608 189.0
DYD3_k127_3575603_3 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.000000000000000000000000000004382 128.0
DYD3_k127_3575603_4 Protein of unknown function (DUF429) - - - 0.0000000000000000000000000000138 134.0
DYD3_k127_3575603_5 EamA-like transporter family - - - 0.00000000000000000004269 101.0
DYD3_k127_3575603_6 LVIVD repeat - - - 0.00000000000000007871 94.0
DYD3_k127_3575603_7 Transcriptional regulator PadR-like family - - - 0.0000000000000001468 83.0
DYD3_k127_3575603_8 but it may be involved in stabilization of the trimeric complex - - - 0.00000000002354 65.0
DYD3_k127_3575603_9 PFAM Mo-dependent nitrogenase - - - 0.0000000002 67.0
DYD3_k127_3582386_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000000004207 109.0
DYD3_k127_3582386_1 CarboxypepD_reg-like domain - - - 0.000003879 57.0
DYD3_k127_3597067_0 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K17830 - 1.3.1.101,1.3.7.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008022 291.0
DYD3_k127_3597067_1 Chlorophyllase K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000001659 238.0
DYD3_k127_3597067_2 Predicted membrane protein (DUF2070) K08979 - - 0.00000000000000000000000000000000005958 147.0
DYD3_k127_3597067_3 Pfam Secreted repeat of - - - 0.0000000000000000000000000001133 129.0
DYD3_k127_3597067_4 4Fe-4S binding domain - - - 0.000000000007597 67.0
DYD3_k127_3625677_0 AAA domain - - - 0.00000000000000000000000000000008778 138.0
DYD3_k127_3625677_1 COG0500 SAM-dependent methyltransferases - - - 0.000000000000000000000000003311 122.0
DYD3_k127_3625677_2 Peptidase family M28 - - - 0.00000000000001704 86.0
DYD3_k127_3625677_3 Predicted membrane protein (DUF2085) - - - 0.000000002094 70.0
DYD3_k127_3636169_0 eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA K03242 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 509.0
DYD3_k127_3636169_1 Belongs to the eukaryotic ribosomal protein eS6 family K02991 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0022613,GO:0022626,GO:0022627,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904 - 0.0000000000000000000000000000000000005045 143.0
DYD3_k127_3636169_2 Fcf1 K07158 - - 0.00000000006371 75.0
DYD3_k127_3636169_3 TonB dependent receptor - - - 0.000002568 59.0
DYD3_k127_3636169_4 Putative antitoxin - - - 0.0001219 48.0
DYD3_k127_3636169_5 gluconolactonase activity - - - 0.000169 53.0
DYD3_k127_3636169_6 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0002592 49.0
DYD3_k127_3644161_0 Aldolase/RraA K13831 - 4.1.2.43,5.3.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 499.0
DYD3_k127_3644161_1 Acetyl-CoA acetyltransferase K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005408 472.0
DYD3_k127_3644161_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005404 412.0
DYD3_k127_3644161_3 PFAM sodium hydrogen exchanger K03455 - - 0.0000000000000000000002117 113.0
DYD3_k127_3644161_4 Right handed beta helix region - - - 0.000000001885 68.0
DYD3_k127_3651009_0 Alcohol dehydrogenase GroES-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 334.0
DYD3_k127_3651009_1 Alanine-glyoxylate amino-transferase K05825 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003817 284.0
DYD3_k127_3651009_2 Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids K00869 GO:0003674,GO:0003824,GO:0004496,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0016125,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019287,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046490,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1901615 2.7.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000005013 271.0
DYD3_k127_3651009_3 Belongs to the universal ribosomal protein uL16 family K02866 - - 0.00000000000000000000000000000000000000000000001503 177.0
DYD3_k127_3651009_4 Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids K06981 - 2.7.4.26 0.000000000000000000009718 107.0
DYD3_k127_3651009_5 Fibronectin type III domain - - - 0.0000000000000000003344 102.0
DYD3_k127_3767449_0 Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000002201 192.0
DYD3_k127_3767449_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000001109 129.0
DYD3_k127_3767449_2 PFAM methyltransferase small K02493 - 2.1.1.297 0.0000000000000000000002462 111.0
DYD3_k127_3767449_4 Domain of unknown function (DUF4332) - - - 0.0000003261 62.0
DYD3_k127_380002_0 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006514 447.0
DYD3_k127_380002_1 metal-binding domain in RNase L inhibitor, RLI K06174 GO:0000166,GO:0003674,GO:0005488,GO:0005506,GO:0005524,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0017076,GO:0019538,GO:0022411,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043024,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0046872,GO:0046914,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 409.0
DYD3_k127_380002_10 exo-alpha-(2->6)-sialidase activity - - - 0.00000000000003703 85.0
DYD3_k127_380002_11 Peptidase, M28 - - - 0.000000000000401 81.0
DYD3_k127_380002_12 PrcB C-terminal - - - 0.00000000001817 71.0
DYD3_k127_380002_13 ABC transporter, ATP-binding protein K06158 - - 0.00000001556 60.0
DYD3_k127_380002_14 LVIVD repeat - - - 0.000002225 61.0
DYD3_k127_380002_15 domain protein - - - 0.00002392 56.0
DYD3_k127_380002_16 Carboxypeptidase regulatory-like domain - - - 0.0001317 53.0
DYD3_k127_380002_17 peptidase - - - 0.0009162 51.0
DYD3_k127_380002_2 DbpA RNA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006081 353.0
DYD3_k127_380002_3 Trypsin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003629 274.0
DYD3_k127_380002_4 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003085 266.0
DYD3_k127_380002_5 Diacylglycerol kinase - - - 0.00000000000000000000000000000000000000000000000000000000001114 218.0
DYD3_k127_380002_6 KR domain K00219 - 1.3.1.34 0.00000000000000000000000000000000000000000000000000000000001984 220.0
DYD3_k127_380002_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000002885 209.0
DYD3_k127_380002_8 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000002283 181.0
DYD3_k127_380002_9 Protein of unknown function (DUF3309) - - - 0.000000000000000002917 86.0
DYD3_k127_3837778_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 479.0
DYD3_k127_3837778_1 Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe) K15449 - 4.1.3.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 307.0
DYD3_k127_3837778_2 Alpha/beta hydrolase family K22318 - - 0.00000000000000000000000000000000000000000000000000000001259 227.0
DYD3_k127_3837778_3 PFAM blue (type 1) copper domain protein - - - 0.00002562 55.0
DYD3_k127_3837778_4 receptor K02014 - - 0.00003967 55.0
DYD3_k127_3839224_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007027 304.0
DYD3_k127_3839224_1 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000005368 164.0
DYD3_k127_3839224_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000003608 132.0
DYD3_k127_3839224_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000001829 125.0
DYD3_k127_3839224_4 methyltransferase K09915 - - 0.000000000000000072 93.0
DYD3_k127_3839224_5 cellulose binding K12132 - 2.7.11.1 0.00000000000004525 77.0
DYD3_k127_3839224_6 Transcriptional regulator - - - 0.00000008511 62.0
DYD3_k127_3839224_7 Protein of unknown function, DUF488 - - - 0.00002656 54.0
DYD3_k127_3846953_0 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 438.0
DYD3_k127_3846953_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000005813 252.0
DYD3_k127_3846953_2 Conserved hypothetical ATP binding protein K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000002373 243.0
DYD3_k127_3846953_3 Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions K02201 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000001198 237.0
DYD3_k127_3846953_4 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000007536 191.0
DYD3_k127_3846953_5 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000001545 162.0
DYD3_k127_3871842_0 acyl-CoA dehydrogenase K18244 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 425.0
DYD3_k127_3871842_1 S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF- 2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis K20215 - 2.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000002457 232.0
DYD3_k127_3871842_2 Met-10+ like-protein K15429 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000003298 219.0
DYD3_k127_3876132_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 565.0
DYD3_k127_3876132_1 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 424.0
DYD3_k127_3876132_2 ERCC4 domain K10896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005457 357.0
DYD3_k127_3876132_3 Galactose oxidase, central domain - - - 0.0000000000000000000000000000000000002909 156.0
DYD3_k127_3876132_4 - - - - 0.000000000007691 73.0
DYD3_k127_3876132_5 Multicopper oxidase K00368,K08100 - 1.3.3.5,1.7.2.1 0.00000003922 61.0
DYD3_k127_3884999_0 LVIVD repeat - - - 0.000000000000001766 89.0
DYD3_k127_3884999_1 LVIVD repeat-containing protein - - - 0.0000000008618 71.0
DYD3_k127_3884999_3 Peptidyl-prolyl cis-trans K01802,K03768,K03775 - 5.2.1.8 0.000128 53.0
DYD3_k127_3885579_0 Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'- monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1- beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates K06863 - 6.3.4.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 434.0
DYD3_k127_3885579_1 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.0000000000000000000000000000000000003667 151.0
DYD3_k127_3885579_2 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000008117 130.0
DYD3_k127_3885579_3 metallopeptidase activity - - - 0.00003453 55.0
DYD3_k127_3912918_0 PFAM 3-hydroxyacyl-CoA dehydrogenase K00074,K15016 - 1.1.1.157,1.1.1.35,4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004543 418.0
DYD3_k127_3912918_1 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 341.0
DYD3_k127_3912918_10 Reeler domain - - - 0.0000002173 63.0
DYD3_k127_3912918_11 domain protein - - - 0.00008059 54.0
DYD3_k127_3912918_2 PFAM RNA-metabolising metallo-beta-lactamase K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 349.0
DYD3_k127_3912918_3 Glycerol-3-phosphate dehydrogenase K00057 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000005958 263.0
DYD3_k127_3912918_4 PFAM HD domain K03698 - - 0.00000000000000000000000000000000000000000000752 183.0
DYD3_k127_3912918_5 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000000000004666 128.0
DYD3_k127_3912918_6 Catalyzes the dephosphorylation of D,L-glyceraldehyde 3- phosphate in vitro K07025 - - 0.000000000000000000000000000001019 141.0
DYD3_k127_3912918_7 - - - - 0.000000000005249 72.0
DYD3_k127_3912918_8 Protease prsW family - - - 0.000000001066 68.0
DYD3_k127_3912918_9 Domain of unknown function (DUF309) K09763 - - 0.000000001879 64.0
DYD3_k127_395866_0 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009897 293.0
DYD3_k127_395866_1 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000003745 246.0
DYD3_k127_395866_2 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 - - 0.0000000000000000000000000000000000000000000314 164.0
DYD3_k127_395866_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000004451 136.0
DYD3_k127_395866_4 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.0000000001047 76.0
DYD3_k127_395866_5 THUMP domain K06963 - - 0.0000001084 63.0
DYD3_k127_395866_6 succinate dehydrogenase or fumarate reductase, flavoprotein K00239 - 1.3.5.1,1.3.5.4 0.000001127 59.0
DYD3_k127_395866_7 PFAM PKD domain containing protein - - - 0.00002806 57.0
DYD3_k127_3975814_0 Belongs to the peptidase S16 family K06870 - - 0.00000000000000000000000000000000000000000000000000000000000001398 240.0
DYD3_k127_3975814_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 GO:0003674,GO:0003824,GO:0003861,GO:0016829,GO:0016835,GO:0016836 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000004862 202.0
DYD3_k127_3975814_2 bacterial-type flagellum-dependent cell motility - - - 0.00000000000000000000000000000000000002703 161.0
DYD3_k127_3975814_3 TIGRFAM addiction module toxin, RelE StbE family K19158 - - 0.000000000000199 74.0
DYD3_k127_3975814_4 - - - - 0.000000000009322 76.0
DYD3_k127_3975814_5 Protein of unknown function (DUF2683) - - - 0.00000000004904 66.0
DYD3_k127_4081774_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006769 274.0
DYD3_k127_4081774_1 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000006788 126.0
DYD3_k127_4081774_2 TonB-dependent receptor - - - 0.00004689 55.0
DYD3_k127_4081774_3 protein conserved in archaea - - - 0.000129 55.0
DYD3_k127_4088300_0 COG1077 Actin-like ATPase involved in cell morphogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 425.0
DYD3_k127_4088300_1 COG1077 Actin-like ATPase involved in cell morphogenesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 334.0
DYD3_k127_4088300_2 Belongs to the eukaryotic ribosomal protein eL15 family K02877 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000001162 184.0
DYD3_k127_4088300_3 Domain of unknown function (DUF1508) - - - 0.0000000000000000000000409 113.0
DYD3_k127_4088300_4 Domain of unknown function (DU1801) - - - 0.000000001112 67.0
DYD3_k127_4108291_0 DSBA oxidoreductase - - - 0.0000000000000000000000000000000000000000000000003952 182.0
DYD3_k127_4108291_1 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA K04799 - - 0.000000000000000000000000000000000000000002527 168.0
DYD3_k127_4108291_2 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000003537 159.0
DYD3_k127_4108291_3 SnoaL-like domain - - - 0.0000000000000000000000000000000000004536 158.0
DYD3_k127_4108291_4 phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000000000006585 121.0
DYD3_k127_4108291_5 BNR repeat-like domain - - - 0.00000000000000000000000006742 123.0
DYD3_k127_4108291_6 ZIP Zinc transporter K07238,K16267 - - 0.000000000000000000000001509 107.0
DYD3_k127_4108291_7 - - - - 0.0000000000000001738 85.0
DYD3_k127_4108291_8 HxlR-like helix-turn-helix - - - 0.0000000000000003341 85.0
DYD3_k127_4121455_0 glutamate dehydrogenase [NAD(P)+] activity K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 525.0
DYD3_k127_4121455_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009454 455.0
DYD3_k127_4121455_2 Transketolase, pyrimidine binding domain K00162,K00167 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005523 439.0
DYD3_k127_4121455_3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 376.0
DYD3_k127_4121455_4 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 330.0
DYD3_k127_4121455_5 - - - - 0.000000008541 66.0
DYD3_k127_4121455_6 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000002548 64.0
DYD3_k127_4121455_7 COG0723 Rieske Fe-S protein - - - 0.000000195 59.0
DYD3_k127_4121455_8 - - - - 0.000006539 57.0
DYD3_k127_4127336_0 KH, type 1, domain K07041 - - 4.512e-247 779.0
DYD3_k127_4127336_1 Belongs to the arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 354.0
DYD3_k127_4127336_10 Domain of unknown function (DUF4382) - - - 0.000000008078 66.0
DYD3_k127_4127336_11 cobalamin-transporting ATPase activity - - - 0.0000003493 61.0
DYD3_k127_4127336_12 cobalamin-transporting ATPase activity - - - 0.000007447 57.0
DYD3_k127_4127336_13 Sulfatase-modifying factor enzyme 1 - - - 0.00001097 57.0
DYD3_k127_4127336_2 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 332.0
DYD3_k127_4127336_3 Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation K03433 GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004298,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0019538,GO:0019774,GO:0030163,GO:0032991,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0070003,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.0000000000000000000000000000000000000000000000000000000000000000000002835 244.0
DYD3_k127_4127336_4 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000006897 239.0
DYD3_k127_4127336_5 Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6- hydroxymethyl-7,8-dihydropterin diphosphate (6-HMDP) K07142 - 2.7.6.3 0.000000000000000000003628 105.0
DYD3_k127_4127336_6 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.000000000000000002923 94.0
DYD3_k127_4127336_7 CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000001489 87.0
DYD3_k127_4127336_8 Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6- hydroxymethyl-7,8-dihydropterin diphosphate (6-HMDP) K07142 - 2.7.6.3 0.00000000003083 65.0
DYD3_k127_4127336_9 response regulator K07713 - - 0.000000002263 64.0
DYD3_k127_4132190_0 Urocanase C-terminal domain K01712 - 4.2.1.49 2.575e-233 734.0
DYD3_k127_4132190_1 PFAM Phenylalanine and histidine ammonia-lyase K01745,K10775 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009072,GO:0009698,GO:0009699,GO:0009800,GO:0009803,GO:0009987,GO:0016043,GO:0016053,GO:0016829,GO:0016840,GO:0016841,GO:0019438,GO:0019748,GO:0019752,GO:0022607,GO:0032787,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044550,GO:0045548,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 4.3.1.24,4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 542.0
DYD3_k127_4132190_2 peptidase S15 K06978 - - 0.0000000000000000000000000000000000001486 164.0
DYD3_k127_4132190_3 Copper resistance protein CopC K14166 - - 0.00000000000000000000000734 117.0
DYD3_k127_4132190_4 PFAM PKD domain containing protein - - - 0.00005183 54.0
DYD3_k127_4144629_0 aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 610.0
DYD3_k127_4144629_1 Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) K03124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 522.0
DYD3_k127_4144629_2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000006411 226.0
DYD3_k127_4144629_3 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000002488 151.0
DYD3_k127_4144629_4 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.000000000000000004367 87.0
DYD3_k127_4144629_5 mRNA binding K07339 - - 0.000000000002927 68.0
DYD3_k127_4144629_6 transport - - - 0.000000001378 69.0
DYD3_k127_4144629_7 Domain of unknown function (DUF4382) - - - 0.000000003251 69.0
DYD3_k127_4149621_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K03234 - - 9.32e-228 717.0
DYD3_k127_4149621_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03044,K13798 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003567 493.0
DYD3_k127_4149621_10 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03053 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000000000000664 86.0
DYD3_k127_4149621_11 Ferredoxin - - - 0.000000000001953 73.0
DYD3_k127_4149621_12 - - - - 0.0001125 48.0
DYD3_k127_4149621_13 Domain of unknown function (DUF4234) - - - 0.0004353 51.0
DYD3_k127_4149621_2 General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation K03120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001181 243.0
DYD3_k127_4149621_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000959 240.0
DYD3_k127_4149621_4 With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000003541 231.0
DYD3_k127_4149621_5 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000001419 226.0
DYD3_k127_4149621_6 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.00000000000000000000000000000000000000000000000004321 199.0
DYD3_k127_4149621_7 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.00000000000000000000000000000000000000000001307 183.0
DYD3_k127_4149621_8 PFAM aminotransferase - - - 0.00000000000000000000000000000000000002587 160.0
DYD3_k127_4149621_9 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000000000000000000000000000001983 143.0
DYD3_k127_4178301_0 tRNA synthetases class I (W and Y) K01867 GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 429.0
DYD3_k127_4178301_1 metal-binding domain in RNase L inhibitor, RLI K06174 GO:0000166,GO:0003674,GO:0005488,GO:0005506,GO:0005524,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0017076,GO:0019538,GO:0022411,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043024,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0046872,GO:0046914,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000266 415.0
DYD3_k127_4178301_2 Glycosyltransferase Family 4 - - - 0.000000000000001709 88.0
DYD3_k127_4178301_3 TIGRFAM methylmalonyl-CoA mutase N-terminal domain K01847,K01848 - 5.4.99.2 0.00000000001984 66.0
DYD3_k127_4178301_4 Putative adhesin - - - 0.0003666 52.0
DYD3_k127_4232322_0 Carboxypeptidase regulatory-like domain K07151 - 2.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 401.0
DYD3_k127_4232322_1 Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA K04800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 318.0
DYD3_k127_4232322_10 Response regulator receiver domain protein K02483 - - 0.000000001002 70.0
DYD3_k127_4232322_11 Fibronectin type 3 domain - - - 0.000001819 61.0
DYD3_k127_4232322_12 Esterase PHB depolymerase K03932 - - 0.0000138 49.0
DYD3_k127_4232322_13 Bacterial transglutaminase-like N-terminal region - - - 0.00005056 56.0
DYD3_k127_4232322_2 PFAM Diphthamide synthesis DPH2 protein K07561 - 2.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003838 308.0
DYD3_k127_4232322_3 Xylose isomerase-like TIM barrel K01151 - 3.1.21.2 0.00000000000000000000000000000000000000000000000000000000000000000000033 252.0
DYD3_k127_4232322_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000008883 239.0
DYD3_k127_4232322_5 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000185 179.0
DYD3_k127_4232322_6 Catalyzes a salvage reaction resulting in the formation of IMP that is energically less costly than de novo synthesis K00759 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.2.7 0.0000000000000000000000000000000000000000004004 169.0
DYD3_k127_4232322_7 Multicopper oxidase - - - 0.00000000000000000000000000000000000000001206 170.0
DYD3_k127_4232322_8 PFAM Sugar isomerase (SIS) K08094 - 5.3.1.27 0.0000000000000000000000000000000000001398 152.0
DYD3_k127_4232322_9 cheY-homologous receiver domain - - - 0.0000000000000000000002401 114.0
DYD3_k127_4235165_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - - 1.163e-206 654.0
DYD3_k127_4235165_1 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 541.0
DYD3_k127_4235165_10 Biotin-requiring enzyme - - - 0.00000000000009022 79.0
DYD3_k127_4235165_11 PFAM transcriptional regulator PadR family protein - - - 0.000000004642 64.0
DYD3_k127_4235165_2 Carbamoyl-phosphate synthetase large chain domain protein K01959 - 6.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 479.0
DYD3_k127_4235165_3 Acetyl-coenzyme A synthetase N-terminus K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984 467.0
DYD3_k127_4235165_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 300.0
DYD3_k127_4235165_5 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000006236 175.0
DYD3_k127_4235165_6 COG1845 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000001206 172.0
DYD3_k127_4235165_7 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000006212 151.0
DYD3_k127_4235165_8 OsmC-like protein - - - 0.0000000000000000000000000003506 120.0
DYD3_k127_4235165_9 Probable molybdopterin binding domain - - - 0.0000000000000000000000000005963 124.0
DYD3_k127_4259220_0 UbiA prenyltransferase family K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000000000000001571 228.0
DYD3_k127_4259220_1 Belongs to the FPP GGPP synthase family K00805 - 2.5.1.30 0.000000000000000000000000000000000000000000000292 180.0
DYD3_k127_4259220_2 - - - - 0.00000000000000000000000000000000000000000002152 174.0
DYD3_k127_4259220_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000001893 101.0
DYD3_k127_4259220_4 - - - - 0.0000000001336 73.0
DYD3_k127_4259220_5 Belongs to the peptidase S8 family K14645 - - 0.000000008682 65.0
DYD3_k127_4259220_6 photoreceptor activity - - - 0.00003131 54.0
DYD3_k127_4259220_7 transport - - - 0.00006409 54.0
DYD3_k127_4259220_8 polyketide synthase - - - 0.0001334 53.0
DYD3_k127_4259220_9 Sulfur transfer protein involved in thiamine biosynthesis K03154 - - 0.0003847 46.0
DYD3_k127_4262175_0 Isocitrate isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000001054 292.0
DYD3_k127_4305457_0 Involved in regulation of DNA replication K10725 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 494.0
DYD3_k127_4305457_1 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02323 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 349.0
DYD3_k127_4305457_10 Catalyzes the dephosphorylation of 2-phosphoglycolate K22223 - 3.1.3.18 0.00000000000000000000000000000001273 136.0
DYD3_k127_4305457_11 - - - - 0.000000000000000000000000006861 120.0
DYD3_k127_4305457_12 Ion transport protein K10716 - - 0.00000000000000000000000001705 126.0
DYD3_k127_4305457_13 UbiA prenyltransferase family K17105 - 2.5.1.42 0.000000000000000000002802 108.0
DYD3_k127_4305457_14 Signal peptidase K13280 - 3.4.21.89 0.000000000000000000188 101.0
DYD3_k127_4305457_15 PFAM regulatory protein, ArsR - - - 0.000000000000000007763 95.0
DYD3_k127_4305457_16 Membrane protein implicated in regulation of membrane protease activity - - - 0.0000000000000007536 87.0
DYD3_k127_4305457_17 PRC-barrel domain - - - 0.000000000000005662 77.0
DYD3_k127_4305457_18 transport - - - 0.0000007908 60.0
DYD3_k127_4305457_19 Non-ribosomal peptide synthetase modules and related proteins - - - 0.0002971 53.0
DYD3_k127_4305457_2 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 300.0
DYD3_k127_4305457_3 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000003726 270.0
DYD3_k127_4305457_4 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids K17104 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 2.5.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000007407 255.0
DYD3_k127_4305457_5 COG3407 Mevalonate pyrophosphate decarboxylase K17942 - 4.1.1.99 0.00000000000000000000000000000000000000000000000000000000000000002871 243.0
DYD3_k127_4305457_6 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000001624 219.0
DYD3_k127_4305457_7 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043021,GO:0043022,GO:0044424,GO:0044464,GO:0044877 - 0.00000000000000000000000000000000000000000000000000000000000114 239.0
DYD3_k127_4305457_8 AAA family ATPase, CDC48 subfamily K13525 - - 0.00000000000000000000000000000000000000000000000000005842 193.0
DYD3_k127_4305457_9 Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange K04484 - - 0.000000000000000000000000000000000000000000000003919 192.0
DYD3_k127_4347442_0 Xaa-Pro dipeptidyl-peptidase K01281 - 3.4.14.11 0.00000000000000000000000000000000000000000000000002216 200.0
DYD3_k127_4347442_1 Peptidase family M28 - - - 0.0000000000000007978 91.0
DYD3_k127_4377904_0 Heavy metal transport detoxification protein K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 536.0
DYD3_k127_4377904_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 353.0
DYD3_k127_4377904_10 - - - - 0.0000000000000000000000000000198 128.0
DYD3_k127_4377904_11 RNase H K03469 - 3.1.26.4 0.00000000000000000000000000002086 134.0
DYD3_k127_4377904_12 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000008616 96.0
DYD3_k127_4377904_13 cobalamin-transporting ATPase activity - - - 0.0000258 55.0
DYD3_k127_4377904_14 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.00006048 55.0
DYD3_k127_4377904_2 Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids K15888 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 319.0
DYD3_k127_4377904_3 PFAM LemA K03744 - - 0.00000000000000000000000000000000000000000000000000000000000026 216.0
DYD3_k127_4377904_4 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000907 215.0
DYD3_k127_4377904_5 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000002528 218.0
DYD3_k127_4377904_6 LemA family K03744 - - 0.00000000000000000000000000000000000000000004199 171.0
DYD3_k127_4377904_7 - - - - 0.000000000000000000000000000000000000000002607 162.0
DYD3_k127_4377904_8 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs K07573 - - 0.000000000000000000000000000000004051 138.0
DYD3_k127_4377904_9 Haloacid dehalogenase-like hydrolase K01838 - 5.4.2.6 0.00000000000000000000000000000005434 133.0
DYD3_k127_4386057_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 477.0
DYD3_k127_4386057_1 response regulator receiver - - - 0.00007601 50.0
DYD3_k127_4407405_0 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 295.0
DYD3_k127_4407405_1 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000001585 218.0
DYD3_k127_4407405_2 Sugar-specific transcriptional regulator TrmB - - - 0.000000008199 67.0
DYD3_k127_4407405_3 protein conserved in archaea - - - 0.0000001917 64.0
DYD3_k127_4471344_0 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000000001182 122.0
DYD3_k127_4471344_1 Baseplate J-like protein K01218,K03768 - 3.2.1.78,5.2.1.8 0.000008424 59.0
DYD3_k127_4471344_2 Uncharacterised protein family UPF0058 - - - 0.0005346 44.0
DYD3_k127_4472300_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 3.245e-227 718.0
DYD3_k127_4472300_1 AAA-like domain K06915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889 411.0
DYD3_k127_4472300_2 Protein of unknown function (DUF357) K09728 - - 0.0000000000000000000000001087 117.0
DYD3_k127_4491438_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1144.0
DYD3_k127_4491438_1 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.435e-249 790.0
DYD3_k127_4491438_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007389 343.0
DYD3_k127_4491438_3 PFAM HhH-GPD superfamily base excision DNA repair protein K03575 - - 0.00000000000000000000000000000000000000000000000000000000000003353 227.0
DYD3_k127_4491438_4 Aminotransferase K00812,K22457 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769,GO:0047297 2.6.1.1,2.6.1.14 0.00000000000000000000000000000000000000000000000000000000001222 222.0
DYD3_k127_4491438_5 Serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.00000000000000000000000000000000009811 153.0
DYD3_k127_4491438_6 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.0000000000003878 79.0
DYD3_k127_4491438_7 exo-alpha-(2->6)-sialidase activity - - - 0.000000000004569 79.0
DYD3_k127_4491438_8 FHA domain containing protein - - - 0.000009677 56.0
DYD3_k127_4521754_0 permease - - - 0.000000000000000000000000000000000000000004925 169.0
DYD3_k127_4521754_1 - - - - 0.000000000000009205 87.0
DYD3_k127_4521754_2 - - - - 0.0002044 53.0
DYD3_k127_4532904_0 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001006 241.0
DYD3_k127_4532904_1 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000008868 172.0
DYD3_k127_4532904_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000003927 96.0
DYD3_k127_4532904_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000003721 86.0
DYD3_k127_4532904_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000001724 81.0
DYD3_k127_4532904_5 protein serine/threonine phosphatase activity - - - 0.00000000000671 78.0
DYD3_k127_4532904_6 RibD C-terminal domain - - - 0.00000001923 62.0
DYD3_k127_4532904_7 Serine threonine protein kinase - - - 0.0000001608 57.0
DYD3_k127_4535183_0 Domain of unknown function DUF87 K06915,K19172 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 501.0
DYD3_k127_4535183_1 phosphoribosyltransferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000001944 122.0
DYD3_k127_4535183_2 NurA - - - 0.000000000000003913 87.0
DYD3_k127_4535183_3 - - - - 0.00003276 54.0
DYD3_k127_4555433_0 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 415.0
DYD3_k127_4555433_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 319.0
DYD3_k127_4555433_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008222 278.0
DYD3_k127_4555433_3 tRNA-splicing ligase that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs K14415 GO:0000166,GO:0000394,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016886,GO:0017076,GO:0019001,GO:0019002,GO:0030145,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363 6.5.1.3 0.000000000000000000000000000003225 122.0
DYD3_k127_4555433_4 Periplasmic binding protein - - - 0.0000000000000000003272 91.0
DYD3_k127_4555433_5 Pathogenicity locus - - - 0.0000000000000000003346 90.0
DYD3_k127_4563809_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 - 1.4.1.2,1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008989 561.0
DYD3_k127_4563809_1 type II secretion system protein K07332 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006811 460.0
DYD3_k127_4563809_2 Heat shock 70 kDa protein K04043 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0030246,GO:0030247,GO:0044464,GO:0051704,GO:0098630,GO:0098743,GO:2001065 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 378.0
DYD3_k127_4563809_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 354.0
DYD3_k127_4563809_4 Rad51 - - - 0.0000000000000000000000000000000000000000000000000000001629 205.0
DYD3_k127_4563809_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000004575 132.0
DYD3_k127_4563809_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000006488 109.0
DYD3_k127_4563809_7 Pfam:KaiC - - - 0.00000000000000000003483 103.0
DYD3_k127_4563809_8 toxin activity - - - 0.0000000002107 73.0
DYD3_k127_4563809_9 PKD domain containing protein - - - 0.0000000003021 73.0
DYD3_k127_4601242_0 Belongs to the RtcB family K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 454.0
DYD3_k127_4601242_1 TIGRFAM argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008437 363.0
DYD3_k127_4601242_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000007867 273.0
DYD3_k127_4601242_3 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000005688 211.0
DYD3_k127_4608696_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K03918 - 2.6.1.19,2.6.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 467.0
DYD3_k127_4608696_1 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188,K09874 - - 0.00000000000000000000000000000000000000000000000000000007223 204.0
DYD3_k127_4608696_2 Urate oxidase N-terminal - - - 0.00000000000000000000000000002276 123.0
DYD3_k127_4608696_3 Copper binding proteins, plastocyanin/azurin family - - - 0.00000004276 65.0
DYD3_k127_4626154_0 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000002277 231.0
DYD3_k127_4626154_1 TIGRFAM geranylgeranyl reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000253 224.0
DYD3_k127_4626154_2 Bacterial phospho-glucose isomerase C-terminal SIS domain K15916 - 5.3.1.8,5.3.1.9 0.000000000000000000000000000000000000000000000000109 191.0
DYD3_k127_4626154_3 Belongs to the UPF0215 family K09120 - - 0.000000000000000000000000000000000000001126 155.0
DYD3_k127_4626154_4 Protein of unknown function (DUF531) K09725 - - 0.0000000000000000000000000000000009289 137.0
DYD3_k127_4626154_5 Peptidyl-tRNA hydrolase PTH2 K04794 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.1.1.29 0.0000000000000000000000000000002564 128.0
DYD3_k127_4626154_6 PFAM ABC-2 type transporter K01992 - - 0.0000000000000000000002921 111.0
DYD3_k127_4626154_7 - - - - 0.000001647 56.0
DYD3_k127_4673128_0 TIGRFAM histone acetyltransferase, ELP3 family K07739 - 2.3.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 464.0
DYD3_k127_4673128_1 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000001136 61.0
DYD3_k127_4673128_2 PFAM blue (type 1) copper domain protein - - - 0.00001852 57.0
DYD3_k127_4673128_3 Copper binding proteins, plastocyanin/azurin family - - - 0.0002278 53.0
DYD3_k127_470516_0 Domain of unknown function (DUF4396) - - - 0.000000000000000000000000000000000000000000000000000000002337 205.0
DYD3_k127_470516_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000002158 170.0
DYD3_k127_470516_2 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000008377 110.0
DYD3_k127_470516_3 COG1846 Transcriptional regulators - - - 0.0000000000000004667 81.0
DYD3_k127_470516_4 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000001125 84.0
DYD3_k127_470516_5 helix_turn_helix ASNC type - - - 0.0000000000004182 77.0
DYD3_k127_470516_6 - - - - 0.0000000001518 70.0
DYD3_k127_470516_7 Transcriptional regulator - - - 0.000001431 57.0
DYD3_k127_470516_8 Protein of unknown function (DUF2721) - - - 0.000006774 55.0
DYD3_k127_4755510_0 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K07575 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000004503 171.0
DYD3_k127_4755510_1 Belongs to the snRNP Sm proteins family K04796 - - 0.0000000000000000001025 91.0
DYD3_k127_4755510_2 rRNA binding K00128,K02922,K06269,K07891,K09557 GO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904 1.2.1.3,3.1.3.16 0.0000000000000106 75.0
DYD3_k127_4755510_3 Glycosyl transferase family 2 - - - 0.00000000002049 74.0
DYD3_k127_4755510_4 Transcriptional regulator, ArsR family - - - 0.0000002324 62.0
DYD3_k127_4770698_0 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 517.0
DYD3_k127_4770698_1 Thiolase, N-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 449.0
DYD3_k127_4770698_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005316 313.0
DYD3_k127_4770698_3 Dehydrogenase K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000001451 235.0
DYD3_k127_4770698_4 PAC2 family K06869 - - 0.0000000000000000000000000000000000000000000000000000000002645 211.0
DYD3_k127_4770698_5 PFAM GHMP kinase K06982 - 2.7.1.169 0.0000000000000000000000000000000003889 145.0
DYD3_k127_4770698_6 Ribosomal protein L11 methyltransferase (PrmA) K07579 - - 0.0000000000000009097 85.0
DYD3_k127_4770698_7 Ribosomal protein L11 methyltransferase (PrmA) K07579 - - 0.00000000000002997 81.0
DYD3_k127_4770698_8 COG1226 Kef-type K transport systems K10716 - - 0.00000000000646 75.0
DYD3_k127_4827692_0 cystathionine gamma-synthase activity K01739,K01760,K01761,K17217 - 2.5.1.48,4.4.1.1,4.4.1.11,4.4.1.2,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 389.0
DYD3_k127_4827692_1 Sarcosine oxidase K00303 - 1.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 372.0
DYD3_k127_4827692_10 LVIVD repeat-containing protein - - - 0.0000000004559 72.0
DYD3_k127_4827692_11 TonB dependent receptor - - - 0.00000001469 66.0
DYD3_k127_4827692_12 LVIVD repeat - - - 0.0000006285 62.0
DYD3_k127_4827692_13 PIN domain - - - 0.00001511 54.0
DYD3_k127_4827692_14 Periplasmic protein TonB links inner and outer membranes - - - 0.00004721 55.0
DYD3_k127_4827692_15 SpoVT / AbrB like domain - - - 0.00005647 50.0
DYD3_k127_4827692_2 2Fe-2S iron-sulfur cluster binding domain K00302 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000002952 274.0
DYD3_k127_4827692_3 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007102 254.0
DYD3_k127_4827692_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000001209 241.0
DYD3_k127_4827692_5 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000007245 147.0
DYD3_k127_4827692_6 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000984 105.0
DYD3_k127_4827692_7 LVIVD repeat - - - 0.000000000000000000007957 107.0
DYD3_k127_4827692_8 BFD-like [2Fe-2S] binding domain - - - 0.000000000000000003564 98.0
DYD3_k127_4827692_9 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000001883 82.0
DYD3_k127_4840613_0 cellular potassium ion transport K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003107 287.0
DYD3_k127_4840613_1 TIGRFAM potassium uptake protein, TrkH family K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000000001439 249.0
DYD3_k127_4840613_2 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000001323 100.0
DYD3_k127_4840613_3 Outer membrane protein beta-barrel family - - - 0.00001562 57.0
DYD3_k127_4870571_0 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000005326 239.0
DYD3_k127_4870571_1 DNA alkylation repair - - - 0.000000000000000000000000000000000000000000000000000000003817 208.0
DYD3_k127_4870571_2 OsmC-like protein - - - 0.00000000000000000000000000000000000002687 153.0
DYD3_k127_4870571_3 HxlR family - - - 0.0000000002096 70.0
DYD3_k127_4870571_4 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats - - - 0.000001148 61.0
DYD3_k127_4875301_0 Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA K04801 GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 420.0
DYD3_k127_4875301_1 Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007616 286.0
DYD3_k127_4875301_2 COG1846 Transcriptional regulators - - - 0.00000000000000003823 86.0
DYD3_k127_4875301_3 - - - - 0.000000000000001776 86.0
DYD3_k127_4875301_4 Domain of unknown function (DUF4332) - - - 0.00000000000002049 83.0
DYD3_k127_4875301_5 Domain of unknown function (DUF4332) - - - 0.000000001079 72.0
DYD3_k127_4895758_0 Type II/IV secretion system protein K07332 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 497.0
DYD3_k127_4895758_1 PFAM type II secretion system K07333 - - 0.0000000000000000000000000000000006185 152.0
DYD3_k127_4895758_2 type II secretion system K07333 - - 0.00000000000000001038 97.0
DYD3_k127_4895758_3 carboxypeptidase - - - 0.000006647 59.0
DYD3_k127_4911167_0 COG0644 Dehydrogenases (flavoproteins) K00313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 541.0
DYD3_k127_4911167_1 Electron transfer flavoprotein alpha subunit - - - 0.000000000000000000000000000009833 120.0
DYD3_k127_4911167_2 short chain dehydrogenase K00059 - 1.1.1.100 0.00000000000000000000000000001102 128.0
DYD3_k127_4911167_3 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides - - - 0.0007788 49.0
DYD3_k127_4913741_0 phosphoribosylamine-glycine ligase activity K01945,K01955 - 6.3.4.13,6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 389.0
DYD3_k127_4980961_0 Zinc carboxypeptidase - - - 0.00000000000246 79.0
DYD3_k127_4980961_1 transport - - - 0.000002243 59.0
DYD3_k127_4980961_2 domain protein - - - 0.00001035 57.0
DYD3_k127_4980961_3 guanyl-nucleotide exchange factor activity K20276 - - 0.00006325 49.0
DYD3_k127_5002248_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 555.0
DYD3_k127_5002248_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 488.0
DYD3_k127_5002248_2 Belongs to the folylpolyglutamate synthase family K11754 GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008172 279.0
DYD3_k127_5002248_3 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0042364,GO:0042398,GO:0042493,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046655,GO:0046656,GO:0050896,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000003776 260.0
DYD3_k127_5002248_4 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000001201 220.0
DYD3_k127_5002248_5 TIGRFAM CRISPR-associated protein Cas4 K07464 - 3.1.12.1 0.0000000000000000000000000000000000133 146.0
DYD3_k127_5002248_6 Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs K16317 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.257 0.0000000000000000000000000000001115 132.0
DYD3_k127_5002248_7 Catalyzes the formation of CDP-2,3-bis-(O- geranylgeranyl)-sn-glycerol (CDP-archaeol) from 2,3-bis-(O- geranylgeranyl)-sn-glycerol 1-phosphate (DGGGP) and CTP. This reaction is the third ether-bond-formation step in the biosynthesis of archaeal membrane lipids K19664 - 2.7.7.67 0.0000000000000000000000000001874 123.0
DYD3_k127_5002248_8 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00001248 53.0
DYD3_k127_5018145_0 Cell division protein 48 (CDC48), domain 2 K13525 - - 1.539e-260 820.0
DYD3_k127_5018145_1 COG1290 Cytochrome b subunit of the bc complex - - - 0.000000000000000000000000000000000000000000000000000000000000000000002809 252.0
DYD3_k127_5018145_2 Rieske [2Fe-2S] domain K03886 - - 0.000001243 58.0
DYD3_k127_5018145_3 Cytochrome b subunit of the bc complex K15879 - - 0.00005027 53.0
DYD3_k127_5024575_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 522.0
DYD3_k127_5024575_1 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 433.0
DYD3_k127_5024575_2 COG3387 Glucoamylase and related glycosyl hydrolases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000818 397.0
DYD3_k127_5024575_3 PFAM aminotransferase class V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 334.0
DYD3_k127_5024575_4 Starch synthase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 320.0
DYD3_k127_5024575_5 Thioesterase-like superfamily - - - 0.0000000000000000000000000000000000000007244 158.0
DYD3_k127_5024575_6 Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation K07130 GO:0003674,GO:0003824,GO:0004061,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043167,GO:0043169,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.00000000000000000000000000000000009659 146.0
DYD3_k127_5024575_7 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000003104 116.0
DYD3_k127_5024575_8 TonB-dependent receptor plug - - - 0.00001101 56.0
DYD3_k127_5024575_9 HxlR-like helix-turn-helix - - - 0.0008324 47.0
DYD3_k127_5071261_0 Zinc carboxypeptidase - - - 0.00000000000000000000000000000000000000000000009092 192.0
DYD3_k127_5071261_1 Zinc carboxypeptidase - - - 0.000000000000000000000008335 114.0
DYD3_k127_5071261_2 - - - - 0.00000001866 66.0
DYD3_k127_5071261_3 Zinc carboxypeptidase - - - 0.0002481 49.0
DYD3_k127_5091764_0 leucyl-tRNA aminoacylation K01869 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.4 3.444e-251 805.0
DYD3_k127_5091764_1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.0000000000000000000000000000000000000000000002372 171.0
DYD3_k127_5091764_2 Membrane protein of unknown function DUF63 - - - 0.0000000000002398 83.0
DYD3_k127_5091764_3 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0003987 44.0
DYD3_k127_5162102_0 TIGRFAM FeS assembly protein SufB K09014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 591.0
DYD3_k127_5162102_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000000000001736 150.0
DYD3_k127_5162102_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000002427 71.0
DYD3_k127_5208128_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 292.0
DYD3_k127_5208128_1 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.0000000000000000000000000000000000000000000000000000000000000004117 235.0
DYD3_k127_5208128_2 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000007724 215.0
DYD3_k127_5208128_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000001297 142.0
DYD3_k127_5208128_4 Phosphate acyltransferases K15781 - 2.3.1.51,3.1.3.3 0.0000000000000000000004052 108.0
DYD3_k127_5208128_5 Protein of unknown function (DUF1405) - - - 0.00000000000001973 82.0
DYD3_k127_5208128_6 Protein of unknown function (DUF983) - - - 0.0000000000003244 79.0
DYD3_k127_5249821_0 Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex K03264 - - 0.0000000000000000000000000000000000000000000000000003045 192.0
DYD3_k127_5249821_1 May be involved in maturation of the 30S ribosomal subunit K02966 - - 0.0000000000000000000000000000000000000000000007654 171.0
DYD3_k127_5249821_10 exo-alpha-(2->6)-sialidase activity - - - 0.000009408 58.0
DYD3_k127_5249821_12 CRS1_YhbY K07574 - - 0.00004626 55.0
DYD3_k127_5249821_2 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000001244 143.0
DYD3_k127_5249821_3 Belongs to the PDCD5 family K06875 - - 0.00000000000000000000003951 105.0
DYD3_k127_5249821_4 Belongs to the ribosomal protein L31e family K02910 - - 0.0000000000000000005161 95.0
DYD3_k127_5249821_5 Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends K03540 - 3.1.26.5 0.00000000000000001533 93.0
DYD3_k127_5249821_6 rRNA binding K02944 - - 0.0000000001628 66.0
DYD3_k127_5249821_7 Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding K04797 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0016272,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032991,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.00000006332 60.0
DYD3_k127_5249821_8 Belongs to the eukaryotic ribosomal protein eL39 family K02924 - - 0.0000001066 62.0
DYD3_k127_5249821_9 Hexapeptide repeat of succinyl-transferase - - - 0.000002082 56.0
DYD3_k127_5350527_0 Serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.00000000000000000000000000000000000000000001174 183.0
DYD3_k127_5350527_1 phosphorelay signal transduction system K21397 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006355,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0030312,GO:0031323,GO:0031326,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051252,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0072521,GO:0080090,GO:0090407,GO:0097159,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903506,GO:2000112,GO:2001141 - 0.00001237 55.0
DYD3_k127_5350527_2 SchA/CurD like domain - - - 0.0006895 47.0
DYD3_k127_5404992_0 COGs COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K04108 - 1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000005368 248.0
DYD3_k127_5404992_1 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000002599 192.0
DYD3_k127_5404992_2 XdhC Rossmann domain K07402 - - 0.000000000000000000000000000000002271 139.0
DYD3_k127_5404992_3 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor K06072,K08187 GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010506,GO:0010508,GO:0012505,GO:0016020,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0036211,GO:0042175,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051604,GO:0055114,GO:0065007,GO:0071704,GO:0098827,GO:1901564 1.14.99.29 0.00000000000000000000000000000006002 130.0
DYD3_k127_5404992_4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.000000000000000000000262 104.0
DYD3_k127_5409201_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000329 70.0
DYD3_k127_5409201_1 WD40-like Beta Propeller Repeat K03641 - - 0.0005476 51.0
DYD3_k127_5432230_0 ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C- terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome association which triggers gate opening, and supports translocation of unfolded substrates K03420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 440.0
DYD3_k127_5432230_1 COG1290 Cytochrome b subunit of the bc complex - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 287.0
DYD3_k127_5432230_10 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.000002252 57.0
DYD3_k127_5432230_2 Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008985 290.0
DYD3_k127_5432230_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family - GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000001482 243.0
DYD3_k127_5432230_4 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 GO:0000049,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.7.7.87 0.0000000000000000000000000000000000000000007065 169.0
DYD3_k127_5432230_5 COG1290 Cytochrome b subunit of the bc complex - - - 0.0000000000000000000000000000000000000001791 167.0
DYD3_k127_5432230_6 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000002809 120.0
DYD3_k127_5432230_7 Helix-turn-helix XRE-family like proteins K03627 - - 0.0000000000000147 80.0
DYD3_k127_5432230_8 Glutaredoxin-like domain (DUF836) - - - 0.00000001377 63.0
DYD3_k127_5432230_9 PUA domain K07565 - - 0.0000007222 60.0
DYD3_k127_5434617_0 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 520.0
DYD3_k127_5434617_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006061 496.0
DYD3_k127_5434617_2 Belongs to the thioredoxin family K03671 - - 0.00000000000000000001075 109.0
DYD3_k127_5434617_3 PFAM amino acid-binding ACT domain protein - - - 0.00000000000001197 79.0
DYD3_k127_5434617_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000008074 62.0
DYD3_k127_5450418_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 299.0
DYD3_k127_5450418_1 SMART phosphoesterase PHP domain protein K04477 - - 0.000000000000000000000000000000000000000000000000000000001864 216.0
DYD3_k127_5450418_2 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000005381 201.0
DYD3_k127_5450418_3 Histidine biosynthesis bifunctional protein hisIE K01496,K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000009221 177.0
DYD3_k127_5450418_4 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000001445 164.0
DYD3_k127_5450418_5 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000001725 98.0
DYD3_k127_546999_0 Septum formation - - - 0.000000003704 64.0
DYD3_k127_546999_1 related to lactoylglutathione lyase K06996 - - 0.000005563 50.0
DYD3_k127_552925_0 DNA replication proofreading K02336,K06877 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002721 295.0
DYD3_k127_552925_1 phosphohistidine phosphatase K08296 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:1901564 - 0.0000000000002239 77.0
DYD3_k127_552925_2 Belongs to the SOS response-associated peptidase family - - - 0.0002794 47.0
DYD3_k127_5532824_0 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 358.0
DYD3_k127_5532824_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis K04479 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000001675 255.0
DYD3_k127_5532824_10 PFAM Transposase DDE domain - - - 0.0000173 56.0
DYD3_k127_5532824_2 cation diffusion facilitator family transporter K16264 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000004511 233.0
DYD3_k127_5532824_3 Glycosyl hydrolase family 26 K01179 GO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798 3.2.1.4 0.0000000000000000000000000000000000000000000000000002042 200.0
DYD3_k127_5532824_4 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000005957 157.0
DYD3_k127_5532824_5 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000211 147.0
DYD3_k127_5532824_6 threonine efflux protein - - - 0.000000000000000000001248 104.0
DYD3_k127_5532824_7 protein histidine kinase activity - - - 0.000000005381 66.0
DYD3_k127_5532824_8 HxlR family - - - 0.00000004244 61.0
DYD3_k127_5532824_9 thiolester hydrolase activity K07018 - - 0.0000009812 60.0
DYD3_k127_5536222_0 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 454.0
DYD3_k127_5536222_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000007001 157.0
DYD3_k127_5536222_2 Nickel-containing superoxide dismutase - - - 0.000000000000000000000000000000000000103 147.0
DYD3_k127_5536222_3 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000002817 92.0
DYD3_k127_5536222_4 peptidase - - - 0.000000000004162 75.0
DYD3_k127_5536222_5 Dodecin K09165 - - 0.0000000001309 65.0
DYD3_k127_5536222_6 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.000008879 57.0
DYD3_k127_5571938_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007727 449.0
DYD3_k127_5571938_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003172 407.0
DYD3_k127_5571938_10 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.0000000000000000000000006043 119.0
DYD3_k127_5571938_11 TonB dependent receptor K02014 - - 0.00002304 55.0
DYD3_k127_5571938_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity K01409 GO:0000049,GO:0000408,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 404.0
DYD3_k127_5571938_3 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002008 382.0
DYD3_k127_5571938_4 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003033 278.0
DYD3_k127_5571938_5 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000338 246.0
DYD3_k127_5571938_6 DHHA1 domain K07463 - - 0.000000000000000000000000000000000000000000000000002422 201.0
DYD3_k127_5571938_7 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000000000000000000000000000000000000000000000194 189.0
DYD3_k127_5571938_8 ribosomal protein S15 K02956 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000003315 176.0
DYD3_k127_5571938_9 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. The Kae1 domain likely plays a direct catalytic role in this reaction. The Bud32 domain probably displays kinase activity that regulates Kae1 function K15904 - 2.3.1.234,2.7.11.1 0.0000000000000000000000000000000000004756 154.0
DYD3_k127_557947_0 Glyceraldehyde-3-phosphate dehydrogenase K00150 - 1.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006695 395.0
DYD3_k127_557947_1 ABC-2 family transporter protein K01992 - - 0.0002116 52.0
DYD3_k127_5673954_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 8.338e-236 747.0
DYD3_k127_5673954_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000009768 278.0
DYD3_k127_5673954_2 Sodium hydrogen exchanger K11105 - - 0.00000000000000000000000000000000007029 150.0
DYD3_k127_5673954_3 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.77 0.0000000000002572 79.0
DYD3_k127_5673954_4 COG NOG14600 non supervised orthologous group - - - 0.000001371 51.0
DYD3_k127_5673954_5 cobalamin-transporting ATPase activity - - - 0.000003151 58.0
DYD3_k127_5673954_6 - - - - 0.00001511 54.0
DYD3_k127_5673954_7 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.0002365 53.0
DYD3_k127_573333_0 TIGRFAM TIGR00268 family protein K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003536 261.0
DYD3_k127_573333_1 PKD domain - - - 0.00000000000001908 86.0
DYD3_k127_573333_2 Belongs to the UPF0248 family K09715 - - 0.0000000002044 66.0
DYD3_k127_573333_3 TonB-dependent receptor - - - 0.00002534 56.0
DYD3_k127_573333_4 TonB-dependent siderophore receptor K02014 - - 0.0008243 50.0
DYD3_k127_5737594_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006089 595.0
DYD3_k127_5737594_1 Beta-Casp domain K07577 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 415.0
DYD3_k127_5737594_2 Belongs to the LDH MDH superfamily. LDH family K00016 - 1.1.1.27 0.000004765 50.0
DYD3_k127_5755421_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 1.027e-270 848.0
DYD3_k127_5755421_1 Catalyzes the conversion of dihydroorotate to orotate K00254,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 288.0
DYD3_k127_5755421_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000002521 228.0
DYD3_k127_5755421_3 snoRNA binding domain, fibrillarin K14564 GO:0000154,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000001924 208.0
DYD3_k127_5755421_4 Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA K04795 GO:0000154,GO:0000494,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008213,GO:0008276,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016074,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0022613,GO:0031123,GO:0031126,GO:0031167,GO:0032259,GO:0033967,GO:0034470,GO:0034641,GO:0034660,GO:0034963,GO:0036009,GO:0036211,GO:0042054,GO:0042254,GO:0043144,GO:0043170,GO:0043412,GO:0043414,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046483,GO:0051276,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140096,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1901564,GO:1990258,GO:1990259 - 0.0000000000000000000000000000000000000000000000219 192.0
DYD3_k127_5755421_5 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000001628 181.0
DYD3_k127_5755421_6 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.000000000000000000000000000000000003281 154.0
DYD3_k127_5755421_7 Tonb-dependent siderophore receptor K02014 - - 0.000006244 57.0
DYD3_k127_5766376_0 GTP-binding protein K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006074 294.0
DYD3_k127_5766376_1 Uncharacterized protein conserved in archaea (DUF2073) K09743 - - 0.0000000000000000000000000125 118.0
DYD3_k127_5766376_2 Cupin domain - - - 0.0000000000000000000007516 96.0
DYD3_k127_5766376_3 peptidase activity, acting on L-amino acid peptides K01337,K05994,K20276 - 3.4.11.10,3.4.21.50 0.00000000000000004542 93.0
DYD3_k127_5766376_4 Patatin-like phospholipase K07001 - - 0.0001612 50.0
DYD3_k127_5812633_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 354.0
DYD3_k127_5812633_1 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.0000000381 61.0
DYD3_k127_5812633_3 protein conserved in archaea K09723 - - 0.00001941 55.0
DYD3_k127_5819612_0 TIGRFAM small GTP-binding protein K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 402.0
DYD3_k127_5819612_1 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000006046 161.0
DYD3_k127_5819612_10 Domain of unknown function (DUF4430) - - - 0.0007687 49.0
DYD3_k127_5819612_2 COGs COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase K16786,K16787 - - 0.000000000000000000001475 110.0
DYD3_k127_5819612_3 Regulatory protein Crp K07730 - - 0.00000000000005011 81.0
DYD3_k127_5819612_4 - - - - 0.00000000009584 74.0
DYD3_k127_5819612_5 Carboxypeptidase regulatory-like domain - - - 0.00000002753 62.0
DYD3_k127_5819612_6 - - - - 0.00008059 54.0
DYD3_k127_5819612_7 TonB dependent receptor - - - 0.0001008 54.0
DYD3_k127_5819612_8 TonB-dependent receptor K16091 - - 0.0001436 53.0
DYD3_k127_5819612_9 Large extracellular alpha-helical protein K06894,K08693 - 3.1.3.5,3.1.3.6,3.1.4.16 0.0001846 53.0
DYD3_k127_585389_0 ZPR1-related zinc finger protein K06874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000002289 156.0
DYD3_k127_585389_1 protein conserved in archaea K09746 - - 0.0000000000000000000000000000000000227 145.0
DYD3_k127_585389_2 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K07575 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000002552 128.0
DYD3_k127_585389_3 Pfam:DUF552 K09152 - - 0.0000000000000000000000000006212 120.0
DYD3_k127_5879388_0 PFAM 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 361.0
DYD3_k127_5879388_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.0000000000000000000000000000000000000000000000000000000000000000001927 236.0
DYD3_k127_5879388_2 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000007816 102.0
DYD3_k127_5879388_3 regulatory protein, FmdB family - - - 0.0001409 46.0
DYD3_k127_5913280_0 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.00000000000000000000000000000000000000000000000000168 197.0
DYD3_k127_5913280_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000006429 198.0
DYD3_k127_5913280_2 PFAM Amino acid K03294 - - 0.00000000000000000321 90.0
DYD3_k127_5913280_3 - - - - 0.00000000000004552 81.0
DYD3_k127_5954183_0 succinate dehydrogenase K00239 GO:0000104,GO:0000166,GO:0001539,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0006113,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016491,GO:0016627,GO:0022607,GO:0022900,GO:0030030,GO:0030031,GO:0032991,GO:0033554,GO:0036094,GO:0040011,GO:0043167,GO:0043168,GO:0044085,GO:0044237,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044780,GO:0044781,GO:0045273,GO:0045274,GO:0045283,GO:0045284,GO:0045333,GO:0048037,GO:0048870,GO:0050660,GO:0050662,GO:0050896,GO:0051179,GO:0051674,GO:0051716,GO:0055114,GO:0070469,GO:0070470,GO:0070925,GO:0071840,GO:0071944,GO:0071949,GO:0071973,GO:0097159,GO:0097588,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363 1.3.5.1,1.3.5.4 1.708e-237 749.0
DYD3_k127_5954183_1 Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA K03265 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 420.0
DYD3_k127_5954183_10 phosphoesterase RecJ domain protein K07463 - - 0.00000001007 66.0
DYD3_k127_5954183_2 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 338.0
DYD3_k127_5954183_3 Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair K02683 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005486 286.0
DYD3_k127_5954183_4 hydrolase activity, acting on ester bonds - - - 0.00000000000000000000000000000000000000000000000000000000001305 217.0
DYD3_k127_5954183_5 Cleaves both 3' and 5' ssDNA extremities of branched DNA structures K07503 - - 0.00000000000000000000000000000000000000000000000000002741 197.0
DYD3_k127_5954183_6 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000001067 174.0
DYD3_k127_5954183_7 Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair K18882 - - 0.000000000000000000000000000000000744 136.0
DYD3_k127_5954183_8 NMD3 family K07562 - - 0.00000000000000000000000000000008778 138.0
DYD3_k127_5954183_9 membrane - - - 0.000000000000006638 75.0
DYD3_k127_6015266_0 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 302.0
DYD3_k127_6026033_0 Isocitrate lyase K01637 - 4.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006186 433.0
DYD3_k127_6026033_1 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 375.0
DYD3_k127_6026033_2 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.0000000000000000000000000000000000000000000000000002506 207.0
DYD3_k127_6026033_3 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000004352 145.0
DYD3_k127_6026033_4 - - - - 0.00000000000000000000002634 109.0
DYD3_k127_6026033_5 protein conserved in archaea - - - 0.0000000000000000000003291 107.0
DYD3_k127_6026033_6 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.00000000000000000002181 95.0
DYD3_k127_6026033_7 COG1522 Transcriptional regulators K03718 - - 0.000000000000000003472 91.0
DYD3_k127_6026033_8 - K00960 - 2.7.7.6 0.000000000003169 68.0
DYD3_k127_6026033_9 LVIVD repeat - - - 0.000001846 60.0
DYD3_k127_6045705_0 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000002442 211.0
DYD3_k127_6045705_1 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000001306 135.0
DYD3_k127_6045705_2 - - - - 0.0000000000000000000000001451 119.0
DYD3_k127_6045705_3 Bifunctional nuclease K08999 - - 0.000000000000000000003496 106.0
DYD3_k127_6045705_4 archaeal coiled-coil protein - - - 0.0000000000000000000296 102.0
DYD3_k127_6045705_5 Domain of unknown function (DUF4332) - - - 0.000000000000003414 90.0
DYD3_k127_6045705_6 ACT domain protein - - - 0.000000000000007401 79.0
DYD3_k127_6045705_7 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.00001427 56.0
DYD3_k127_606270_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000054 63.0
DYD3_k127_606270_1 - - - - 0.0000001886 64.0
DYD3_k127_606270_2 Type II secretory pathway component ExeA - - - 0.0003753 52.0
DYD3_k127_608414_0 PFAM tRNA synthetase, class II (G, H, P and S) K01880 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 559.0
DYD3_k127_608414_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0001968,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043236,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050840,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 526.0
DYD3_k127_608414_10 Helix-turn-helix domain - - - 0.0002288 53.0
DYD3_k127_608414_2 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000001941 209.0
DYD3_k127_608414_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K11527 - 2.7.13.3 0.000000000000000000000000000000000000000000000000003526 198.0
DYD3_k127_608414_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000001959 166.0
DYD3_k127_608414_5 Amidohydrolase family - - - 0.00000000000000000000000000000000000002232 156.0
DYD3_k127_608414_6 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000000000000000000000003351 118.0
DYD3_k127_608414_7 Roadblock LC7 family protein K07131 - - 0.0000000000000000002023 93.0
DYD3_k127_608414_8 Belongs to the eukaryotic ribosomal protein eL15 family K02877 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000405 56.0
DYD3_k127_608414_9 exosome subunit K07581 - - 0.0000001614 58.0
DYD3_k127_6094313_0 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000876 344.0
DYD3_k127_6094313_1 Type II secretion system K07333 - - 0.0000000000000000000000000000000000000006222 167.0
DYD3_k127_6094313_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000001511 150.0
DYD3_k127_6094313_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000001312 64.0
DYD3_k127_6125869_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 3.178e-275 872.0
DYD3_k127_6125869_1 RNA-metabolising metallo-beta-lactamase K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 502.0
DYD3_k127_6125869_10 polysaccharide biosynthetic process - - - 0.000000000000000000000001545 119.0
DYD3_k127_6125869_11 COG0471 Di- and tricarboxylate transporters K14445 - - 0.00000000000000000000003702 113.0
DYD3_k127_6125869_12 Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes K03622 - - 0.00000000000000000000005033 106.0
DYD3_k127_6125869_13 Histidine kinase - - - 0.00000000000000001172 98.0
DYD3_k127_6125869_14 repeat protein - - - 0.0000000006919 72.0
DYD3_k127_6125869_15 - - - - 0.000000002544 68.0
DYD3_k127_6125869_16 Glycosyltransferase Family 4 K13657 - 2.4.1.252 0.0000008644 58.0
DYD3_k127_6125869_2 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 364.0
DYD3_k127_6125869_3 Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin K17488 GO:0003674,GO:0003824,GO:0003933,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044682 3.5.4.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003399 285.0
DYD3_k127_6125869_4 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004626 277.0
DYD3_k127_6125869_5 protein histidine kinase activity K05962 - 2.7.13.1 0.0000000000000000000000000000000000000000000000000000000000000000001253 257.0
DYD3_k127_6125869_6 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000001148 229.0
DYD3_k127_6125869_7 KR domain K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000004865 228.0
DYD3_k127_6125869_8 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000000004154 212.0
DYD3_k127_6125869_9 - - - - 0.00000000000000000000000000000000004335 147.0
DYD3_k127_6134231_0 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000001078 240.0
DYD3_k127_6134231_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000004661 225.0
DYD3_k127_6139502_0 Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs K03177,K11131 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 346.0
DYD3_k127_6139502_1 TM2 domain protein - - - 0.000000000000001725 85.0
DYD3_k127_6139502_2 Protein of unknown function (DUF2752) - - - 0.0007961 48.0
DYD3_k127_6190521_0 phosphatidylserine decarboxylase K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000003986 179.0
DYD3_k127_6190521_1 Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency K06928 - 3.6.1.15 0.00000000000000000000000000000000000001622 148.0
DYD3_k127_6190521_2 Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups K00555 GO:0001510,GO:0002940,GO:0003674,GO:0003824,GO:0004809,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.215,2.1.1.216 0.0000000000000000000000000000000001364 148.0
DYD3_k127_6190521_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000005431 91.0
DYD3_k127_6190521_4 PFAM Transmembrane exosortase (Exosortase_EpsH) - - - 0.0000000000000002371 89.0
DYD3_k127_6190521_5 Glycosyl transferase 4-like domain - - - 0.00000009516 54.0
DYD3_k127_6190521_6 Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency K06928 - 3.6.1.15 0.0000003037 53.0
DYD3_k127_6225853_0 protein conserved in archaea - - - 0.000000002353 68.0
DYD3_k127_6235759_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 330.0
DYD3_k127_6235759_1 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001956 289.0
DYD3_k127_6235759_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004162 259.0
DYD3_k127_6235759_3 PBP superfamily domain K02040 GO:0003674,GO:0005488,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0015698,GO:0042301,GO:0043167,GO:0043168,GO:0051179,GO:0051234 - 0.0000000000000000000000000000000000000000000000000000000000000000000005103 249.0
DYD3_k127_6235759_4 Phosphate transport system permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000002586 258.0
DYD3_k127_6235759_5 Phosphate uptake regulator, PhoU - - - 0.000000000000000000000000000000000000000000000000000000006714 211.0
DYD3_k127_6235759_6 Phosphate transport regulator K07220 - - 0.000000000000000000000000000000000000000001185 164.0
DYD3_k127_6235759_7 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000000000000000000000000000005381 167.0
DYD3_k127_6235759_8 - - - - 0.0000000000000000007119 101.0
DYD3_k127_6235759_9 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000009461 83.0
DYD3_k127_6259796_0 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 328.0
DYD3_k127_6259796_1 Methyltransferase domain - - - 0.000000000000000000000000000000001946 139.0
DYD3_k127_6259796_2 - - - - 0.00000000000000000000000000003179 121.0
DYD3_k127_6259796_3 Acyltransferase family - - - 0.0000000000000000000000000002964 128.0
DYD3_k127_6259796_4 Alternative locus ID K00721 - 2.4.1.83 0.00000000000000002132 93.0
DYD3_k127_6259796_5 Protein of unknown function (DUF2723) - - - 0.0000000000000003484 93.0
DYD3_k127_6259796_6 HELICc2 K10844 - 3.6.4.12 0.00000000000001025 85.0
DYD3_k127_6259796_7 Glycosyltransferase family 87 - - - 0.00000000000004814 85.0
DYD3_k127_6259796_8 PFAM conserved - - - 0.0002279 53.0
DYD3_k127_6259796_9 - K14337,K14339 - - 0.0003664 53.0
DYD3_k127_6343418_0 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000007973 193.0
DYD3_k127_6343418_1 Lysyl oxidase - - - 0.0000000000000008632 90.0
DYD3_k127_6343418_2 Carboxypeptidase regulatory-like domain - - - 0.0000000006149 70.0
DYD3_k127_6343418_3 - - - - 0.0000004409 57.0
DYD3_k127_6365079_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009884 269.0
DYD3_k127_6365079_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001582 276.0
DYD3_k127_6365079_2 - - - - 0.0000000000003146 80.0
DYD3_k127_6378155_0 COG1078 HD superfamily phosphohydrolases K06885 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001222 282.0
DYD3_k127_6378155_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000003667 259.0
DYD3_k127_6378155_2 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000002171 243.0
DYD3_k127_6378155_3 endonuclease III K07457 - - 0.000000000000000000000000000000000000000000000000242 186.0
DYD3_k127_6378155_4 peptidyl-prolyl cis-trans isomerase K01802,K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000000000508 181.0
DYD3_k127_6378155_5 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000006546 131.0
DYD3_k127_6378155_6 SPTR Peptidase S8 and S53 subtilisin kexin sedolisin K01113,K14645,K17713 - 3.1.3.1 0.00000002281 68.0
DYD3_k127_6378155_7 Laminin G domain - - - 0.00005533 55.0
DYD3_k127_6397082_0 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003561 441.0
DYD3_k127_6397082_1 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM-like protein K03519,K13479 - 1.17.1.4,1.2.5.3 0.0000000000000000000000000000000000000000000000000000000001448 231.0
DYD3_k127_6397082_2 Fumarylacetoacetate (FAA) hydrolase family K01826 - 5.3.3.10 0.0000000000000000000000000000000000000000000001592 179.0
DYD3_k127_6397082_3 Electron transfer DM13 - - - 0.0000000000002775 80.0
DYD3_k127_6397082_4 membrane - - - 0.000003392 58.0
DYD3_k127_6397082_5 Bacterial PH domain - - - 0.000003616 57.0
DYD3_k127_6397082_6 Bacterial PH domain K08981 - - 0.00002135 54.0
DYD3_k127_6422694_0 dna ligase K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000005623 274.0
DYD3_k127_6422694_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001112 267.0
DYD3_k127_6432049_0 ABC transporter, transmembrane region K06147,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 438.0
DYD3_k127_6432049_1 Glyoxalase-like domain - - - 0.000000000000006196 76.0
DYD3_k127_6432049_2 peptidase activity - - - 0.00000000000004068 83.0
DYD3_k127_6432049_3 Saccharomyces cerevisiae YMR114C - GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464 - 0.000000000008841 76.0
DYD3_k127_6432049_4 LVIVD repeat - - - 0.00000000001924 76.0
DYD3_k127_6432049_5 TonB-dependent receptor - - - 0.0007228 51.0
DYD3_k127_6432202_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703,K20452 - 4.2.1.33,4.2.1.35,4.2.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 400.0
DYD3_k127_6432202_1 dUTPase K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000003221 179.0
DYD3_k127_6432202_2 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000009343 105.0
DYD3_k127_6432202_3 luxR family - - - 0.00000000000000000000926 100.0
DYD3_k127_6432202_4 Transcriptional regulator - - - 0.00000003111 63.0
DYD3_k127_6432202_5 TonB dependent receptor K16089 - - 0.00001039 56.0
DYD3_k127_6535905_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 4.041e-220 702.0
DYD3_k127_6535905_1 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000001372 178.0
DYD3_k127_6535905_2 DNA polymerase alpha chain like domain - - - 0.00000000000000000000000000000007401 133.0
DYD3_k127_6535905_3 Glycosyl transferases group 1 - - - 0.000000000000000000000001689 113.0
DYD3_k127_6535905_4 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000115 64.0
DYD3_k127_6535905_5 cheY-homologous receiver domain K03413 - - 0.000006541 53.0
DYD3_k127_6535905_6 FtsX-like permease family K02004 - - 0.0008427 51.0
DYD3_k127_6540988_0 Possesses two activities a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase K02322 GO:0003674,GO:0005488,GO:0005515,GO:0042802 2.7.7.7 2.051e-253 810.0
DYD3_k127_6540988_1 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003058 291.0
DYD3_k127_6540988_2 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000007799 264.0
DYD3_k127_6540988_3 PFAM Mandelate racemase muconate lactonizing protein K19802 - 5.1.1.20 0.000000000000000000000000000000000000000000000000000009775 205.0
DYD3_k127_6540988_4 Carboxypeptidase regulatory-like domain K07752 GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008064,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008236,GO:0008237,GO:0008238,GO:0008270,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010563,GO:0010605,GO:0010638,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016787,GO:0017171,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0030832,GO:0030833,GO:0030838,GO:0031224,GO:0031323,GO:0031324,GO:0031334,GO:0031399,GO:0031400,GO:0031984,GO:0032268,GO:0032269,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034097,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042221,GO:0042325,GO:0042326,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043603,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045936,GO:0046872,GO:0046914,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051493,GO:0051495,GO:0051604,GO:0051716,GO:0051721,GO:0060255,GO:0060429,GO:0060562,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070669,GO:0070887,GO:0071310,GO:0071345,GO:0071352,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0098791,GO:0110053,GO:0140096,GO:1901564,GO:1902903,GO:1902905 3.4.17.22 0.00000000000000000002566 106.0
DYD3_k127_6559325_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K03231 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003499 457.0
DYD3_k127_6559325_1 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000002871 172.0
DYD3_k127_6559325_2 Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair K18882 - - 0.000000000000474 77.0
DYD3_k127_6559325_3 Sulfatase-modifying factor enzyme 1 - - - 0.0001166 53.0
DYD3_k127_6575630_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 404.0
DYD3_k127_6575630_1 Glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 378.0
DYD3_k127_6575630_10 - - - - 0.00000003029 60.0
DYD3_k127_6575630_11 gluconolactonase activity K13276,K13735,K14274 GO:0005575,GO:0005576 - 0.00000009526 64.0
DYD3_k127_6575630_13 Belongs to the peptidase S8 family K13276 GO:0005575,GO:0005576 - 0.00048 51.0
DYD3_k127_6575630_14 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.0007574 51.0
DYD3_k127_6575630_2 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 379.0
DYD3_k127_6575630_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000593 259.0
DYD3_k127_6575630_4 PFAM Nitroreductase - - - 0.0000000000000000000000000000000000000000000001761 190.0
DYD3_k127_6575630_5 Purple acid Phosphatase, N-terminal domain - - - 0.000000000000000000000000000000000000000000002717 181.0
DYD3_k127_6575630_6 COG0328 Ribonuclease HI K03469 - 3.1.26.4 0.0000000000000000000001469 109.0
DYD3_k127_6575630_7 - - - - 0.0000000000000003243 89.0
DYD3_k127_6575630_8 BNR repeat-like domain - - - 0.00000000000002481 87.0
DYD3_k127_6575630_9 exo-alpha-(2->6)-sialidase activity - - - 0.000000002202 66.0
DYD3_k127_6587673_0 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 377.0
DYD3_k127_6587673_1 - - - - 0.00000000000000000000000000000007329 129.0
DYD3_k127_6587673_2 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 0.00000000000000000004191 96.0
DYD3_k127_6587673_3 - - - - 0.000001164 53.0
DYD3_k127_6587673_4 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.00002506 55.0
DYD3_k127_659995_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0000000000000000000000000000000000000000000000000000000528 210.0
DYD3_k127_659995_1 response regulator K02479,K07684 - - 0.00000000000000001388 93.0
DYD3_k127_659995_2 cheY-homologous receiver domain - - - 0.00000000000000001902 87.0
DYD3_k127_659995_3 Histidine kinase - - - 0.00000000000008221 81.0
DYD3_k127_659995_4 Signal transducing histidine kinase, homodimeric domain K02487,K06596 - - 0.00000000007788 72.0
DYD3_k127_6610724_0 Type II/IV secretion system protein K07332 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 508.0
DYD3_k127_6610724_1 small GTP-binding protein K06945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 300.0
DYD3_k127_6610724_10 Roadblock LC7 family protein K06945,K07131 - - 0.0000000006524 66.0
DYD3_k127_6610724_11 Transmembrane exosortase (Exosortase_EpsH) - - - 0.000003554 58.0
DYD3_k127_6610724_12 TIGRFAM conserved repeat domain - - - 0.00009446 54.0
DYD3_k127_6610724_13 Radical_SAM C-terminal domain K07739 - 2.3.1.48 0.0008371 48.0
DYD3_k127_6610724_2 Type II secretion system (T2SS), protein F K07333 - - 0.000000000000000000000000000000000000000000003458 187.0
DYD3_k127_6610724_3 Type II secretion system (T2SS), protein F K07333 - - 0.000000000000000000000000000000000000000001232 168.0
DYD3_k127_6610724_4 Pfam:KaiC - - - 0.0000000000000000000000000000000000001958 157.0
DYD3_k127_6610724_5 response regulator - - - 0.00000000000000000000627 105.0
DYD3_k127_6610724_6 exporters of the RND superfamily - - - 0.00000000000000000003805 107.0
DYD3_k127_6610724_7 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.000000000000000000539 94.0
DYD3_k127_6610724_8 toxin activity - - - 0.0000000000000006359 93.0
DYD3_k127_6610724_9 Universal stress protein family K07090 - - 0.00000000000006363 78.0
DYD3_k127_6618454_0 Hemolysins and related proteins containing CBS domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 321.0
DYD3_k127_6618454_1 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000000000000000000000000000000000001857 218.0
DYD3_k127_6618454_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000004442 197.0
DYD3_k127_6618454_3 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.0000000000000000000001663 103.0
DYD3_k127_6618454_4 PFAM NmrA family protein - - - 0.0000000000000000005736 98.0
DYD3_k127_6618454_5 BNR repeat-like domain - - - 0.00000000000000006278 95.0
DYD3_k127_6618454_6 small integral membrane protein - - - 0.0000001732 60.0
DYD3_k127_6618454_7 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000819 53.0
DYD3_k127_6618454_8 COG0826 Collagenase and related K08303 - - 0.00003834 49.0
DYD3_k127_6618454_9 - - - - 0.0006972 44.0
DYD3_k127_6648767_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 402.0
DYD3_k127_6648767_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000002266 175.0
DYD3_k127_6648767_10 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000002468 57.0
DYD3_k127_6648767_11 - - - - 0.00000005715 66.0
DYD3_k127_6648767_12 Ca-dependent carbohydrate-binding module xylan-binding - - - 0.000003682 60.0
DYD3_k127_6648767_13 Belongs to the peptidase S8 family - - - 0.0007376 51.0
DYD3_k127_6648767_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000591 136.0
DYD3_k127_6648767_3 Hexapeptide repeat of succinyl-transferase - - - 0.000000000000000000000001797 113.0
DYD3_k127_6648767_4 Uncharacterised protein family UPF0058 - - - 0.00000000000000002244 85.0
DYD3_k127_6648767_5 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.000000000000001856 87.0
DYD3_k127_6648767_6 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000001162 72.0
DYD3_k127_6648767_7 Belongs to the UPF0235 family K09131 - - 0.0000000000002729 74.0
DYD3_k127_6648767_8 TOPRIM - - - 0.000000000009826 76.0
DYD3_k127_6648767_9 sequence-specific DNA binding - - - 0.000000008634 58.0
DYD3_k127_668550_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000003749 256.0
DYD3_k127_668550_1 Type II secretion system (T2SS), protein F K07333 - - 0.00000000000000000000000000000000000000000000000007538 199.0
DYD3_k127_668550_2 Thioesterase-like superfamily K07107 - - 0.000000000000000002347 91.0
DYD3_k127_668550_3 V4R - - - 0.00000000000007026 82.0
DYD3_k127_668550_4 SprB repeat - - - 0.0000677 56.0
DYD3_k127_6703212_0 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 344.0
DYD3_k127_6703212_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 347.0
DYD3_k127_6703212_10 PAS fold - - - 0.0000002868 61.0
DYD3_k127_6703212_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008367 311.0
DYD3_k127_6703212_3 gluconolactonase activity K01053,K01179,K07214,K12287 - 3.1.1.17,3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 343.0
DYD3_k127_6703212_4 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001954 282.0
DYD3_k127_6703212_5 O-acyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000001598 200.0
DYD3_k127_6703212_6 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000005403 177.0
DYD3_k127_6703212_7 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.000000000000000003905 94.0
DYD3_k127_6703212_8 Pfam:DUF1628 - - - 0.0000000000003807 83.0
DYD3_k127_6703212_9 Esterase PHB depolymerase - - - 0.000000003418 72.0
DYD3_k127_6705061_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 5.238e-292 930.0
DYD3_k127_6705061_1 Redoxin - - - 0.000000000000000000006776 95.0
DYD3_k127_6705061_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07065 - - 0.00000000000000334 81.0
DYD3_k127_6705061_3 Amidohydrolase family - - - 0.00004741 51.0
DYD3_k127_6705061_4 - - - - 0.0004308 46.0
DYD3_k127_6733255_0 Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 465.0
DYD3_k127_6733255_1 tRNA methyltransferase complex GCD14 subunit K07442 - 2.1.1.219,2.1.1.220 0.000000000000000000000000000000000000000000000000006875 193.0
DYD3_k127_6733255_2 Membrane - - - 0.00000000000000000000000000000001013 136.0
DYD3_k127_6733255_3 nicotinamide-nucleotide adenylyltransferase activity K00952 - 2.7.7.1 0.00000000000000000000000000000004734 142.0
DYD3_k127_6733255_4 Competence-damaged protein K03742,K03743 - 3.5.1.42 0.00000000000000000000000000000005172 131.0
DYD3_k127_6733255_5 Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates K18532 - 2.7.4.3 0.0000114 52.0
DYD3_k127_6733255_6 guanyl-nucleotide exchange factor activity K20276 - - 0.0002513 52.0
DYD3_k127_675031_0 COG3387 Glucoamylase and related glycosyl hydrolases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 491.0
DYD3_k127_675031_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K03231 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008092 370.0
DYD3_k127_675031_2 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 318.0
DYD3_k127_675031_3 Glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 318.0
DYD3_k127_675031_4 PFAM ABC-2 type transporter K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000001379 243.0
DYD3_k127_675031_5 Cytochrome C assembly protein K02198 - - 0.00000000000000000000000000000000000000000174 180.0
DYD3_k127_675031_6 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000002321 108.0
DYD3_k127_675031_7 Sucrose-6F-phosphate phosphohydrolase - - - 0.0000000000002369 84.0
DYD3_k127_6755639_0 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 566.0
DYD3_k127_6755639_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 504.0
DYD3_k127_6755639_2 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001942 285.0
DYD3_k127_6755639_3 Sensor histidine kinase, Cache_1, HAMP and PAS domain-containing - - - 0.00000000000000000000000000000000000000000000000000000000000003757 236.0
DYD3_k127_6755639_4 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000009851 233.0
DYD3_k127_6755639_5 HAMP domain - - - 0.00000000000000000000000000000000000000000000002666 187.0
DYD3_k127_6755639_6 Response regulator receiver - - - 0.000000000000000000000001954 109.0
DYD3_k127_6755639_7 Two component, sigma54 specific, transcriptional regulator, Fis family K07714,K19641 - - 0.000000000000000002182 89.0
DYD3_k127_6755639_8 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.00008225 54.0
DYD3_k127_6782064_0 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity K03547,K05970 - 3.1.1.53 0.0000000000000000000000000000000000000000000000000000001561 219.0
DYD3_k127_6782064_1 Putative exonuclease SbcCD, C subunit K03546 - - 0.0000000000000000000000000000000006805 144.0
DYD3_k127_6782064_2 Peptidase family M28 - - - 0.0000000513 64.0
DYD3_k127_6786481_0 Binds directly to 23S rRNA. Probably involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002673 271.0
DYD3_k127_6786481_1 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000000000000000005597 218.0
DYD3_k127_6786481_2 Belongs to the eukaryotic ribosomal protein eS1 family K02984 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000006652 192.0
DYD3_k127_6786481_3 PFAM 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.00000000000000000000000000000000000000000000000001538 190.0
DYD3_k127_6786481_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000207 63.0
DYD3_k127_6887874_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000307 505.0
DYD3_k127_6887874_1 Domain of unknown function DUF11 - - - 0.000000000008469 78.0
DYD3_k127_6947133_0 Archaeal Nre, N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 325.0
DYD3_k127_6947133_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000002454 263.0
DYD3_k127_6947133_10 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000001806 119.0
DYD3_k127_6947133_11 - - - - 0.00000000000000000000001134 108.0
DYD3_k127_6947133_13 - - - - 0.00000000001744 78.0
DYD3_k127_6947133_14 Domain of unknown function (DUF4383) - - - 0.0000000004471 67.0
DYD3_k127_6947133_15 hemerythrin HHE cation binding domain - - - 0.0000000006137 72.0
DYD3_k127_6947133_16 Belongs to the UPF0201 family K09736 - - 0.000001312 55.0
DYD3_k127_6947133_17 ABC-2 family transporter protein K01992 - - 0.000007143 57.0
DYD3_k127_6947133_2 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate K07558 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000002434 261.0
DYD3_k127_6947133_3 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000001275 228.0
DYD3_k127_6947133_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000003473 185.0
DYD3_k127_6947133_5 cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000001826 186.0
DYD3_k127_6947133_6 Putative RNA methylase family UPF0020 K07446 - 2.1.1.213 0.00000000000000000000000000000000000000008413 171.0
DYD3_k127_6947133_7 Belongs to the UPF0200 family - - - 0.0000000000000000000000000000000000000003639 156.0
DYD3_k127_6947133_8 PFAM Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000004985 153.0
DYD3_k127_6947133_9 COGs COG2151 metal-sulfur cluster biosynthetic protein - - - 0.00000000000000000000000002018 115.0
DYD3_k127_6959149_0 Catalyzes the NADPH-dependent reduction of LysW - aminoadipate 6-phosphate to yield LysW -aminoadipate 6- semialdehyde K05829 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 397.0
DYD3_k127_6959149_1 PFAM ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp K05827 - 6.3.2.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 310.0
DYD3_k127_6959149_2 pfam nmd3 K07562 - - 0.000000000000000000000000000000000000000000001174 178.0
DYD3_k127_6959149_3 - - - - 0.00000000000000000000000004587 112.0
DYD3_k127_6959149_4 TIGRFAM lysine biosynthesis protein LysW K05826 - - 0.000000008193 66.0
DYD3_k127_6960322_0 acetylornithine aminotransferase K00821 GO:0003674,GO:0003824,GO:0003992,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006228 365.0
DYD3_k127_6960322_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 335.0
DYD3_k127_6960322_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000005167 208.0
DYD3_k127_6960322_3 - - - - 0.0000000000000000000000000000000000000000000001745 175.0
DYD3_k127_6960322_4 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.0000000000526 64.0
DYD3_k127_6960322_5 protein conserved in archaea - - - 0.00000003938 67.0
DYD3_k127_6960322_6 TonB dependent receptor K16089 - - 0.00001154 57.0
DYD3_k127_6987845_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008535 390.0
DYD3_k127_6987845_1 MobA-like NTP transferase domain K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003074 278.0
DYD3_k127_6987845_2 PFAM ABC transporter related K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003349 288.0
DYD3_k127_6987845_3 Pfam Methyltransferase - - - 0.000000000000000000804 98.0
DYD3_k127_6987845_4 exo-alpha-(2->6)-sialidase activity - - - 0.000004112 59.0
DYD3_k127_6987845_5 Glycosyltransferase like family 2 - - - 0.00001856 56.0
DYD3_k127_7083729_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 2.162e-287 917.0
DYD3_k127_7083729_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.653e-203 642.0
DYD3_k127_7083729_2 COG1599 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins K07466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002319 277.0
DYD3_k127_7083729_3 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000233 265.0
DYD3_k127_7083729_4 protein conserved in archaea K09746 - - 0.00000000000000000000000000000000000000000000000002504 194.0
DYD3_k127_7083729_5 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000002575 188.0
DYD3_k127_7083729_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.0000000000000000000000000000000000000006855 155.0
DYD3_k127_7083729_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.0006758 48.0
DYD3_k127_709687_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009083 496.0
DYD3_k127_709687_1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008524 402.0
DYD3_k127_709687_2 PFAM TspO MBR family K05770 - - 0.00000000000000000000000000008331 121.0
DYD3_k127_709687_3 Protein conserved in bacteria - - - 0.0003834 46.0
DYD3_k127_7099735_0 Belongs to the class-II aminoacyl-tRNA synthetase family K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 479.0
DYD3_k127_7099735_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001534 264.0
DYD3_k127_7099735_2 BNR repeat-like domain - - - 0.00000000000000000008015 104.0
DYD3_k127_7099735_3 helix_turn_helix ASNC type - - - 0.00000000000006723 81.0
DYD3_k127_7099735_4 4 iron, 4 sulfur cluster binding - - - 0.00000000000259 71.0
DYD3_k127_7109528_0 PFAM short chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 380.0
DYD3_k127_7109528_1 NAD(P)H-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001113 279.0
DYD3_k127_7109528_2 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000513 267.0
DYD3_k127_7109528_3 Sodium hydrogen exchanger K11105 - - 0.000000000000000000000000000000000000000000002326 180.0
DYD3_k127_7109528_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000004043 166.0
DYD3_k127_7109528_5 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000004253 166.0
DYD3_k127_7109528_6 Protein of unknown function (DUF445) - - - 0.0000000000000003162 91.0
DYD3_k127_7109528_7 Methyltransferase K16868 - 2.1.1.265 0.000000005152 68.0
DYD3_k127_7109528_8 Acetyltransferase (GNAT) domain - - - 0.0001678 53.0
DYD3_k127_7115422_0 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003173 271.0
DYD3_k127_7115422_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960,K20810 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050270 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000003004 270.0
DYD3_k127_7115422_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000001067 168.0
DYD3_k127_7161129_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 9.74e-245 775.0
DYD3_k127_7161129_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 379.0
DYD3_k127_7161129_10 Radical SAM - - - 0.0000000000000000000000000000000000000000289 166.0
DYD3_k127_7161129_11 TIGRFAM phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.00000000000000000000000000001028 134.0
DYD3_k127_7161129_12 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000003996 114.0
DYD3_k127_7161129_13 response regulator, receiver - - - 0.0000000000000000000003369 101.0
DYD3_k127_7161129_14 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03055 - 2.7.7.6 0.000000000000004721 77.0
DYD3_k127_7161129_15 Promotes the exchange of GDP for GTP in EF-1-alpha GDP, thus allowing the regeneration of EF-1-alpha GTP that could then be used to form the ternary complex EF-1-alpha GTP AAtRNA K03232 - - 0.00000000000001265 78.0
DYD3_k127_7161129_16 Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000002121 87.0
DYD3_k127_7161129_17 Domain of unknown function (DUF1610) K07580 - - 0.0000000054 63.0
DYD3_k127_7161129_18 Transcription elongation factor Spt4 K03050 - 2.7.7.6 0.000000152 61.0
DYD3_k127_7161129_19 more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA K11130 - - 0.0000004561 61.0
DYD3_k127_7161129_2 eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA K03237 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 302.0
DYD3_k127_7161129_20 Belongs to the peptidase S8 family - - - 0.00006358 54.0
DYD3_k127_7161129_21 Putative antitoxin - - - 0.0002948 47.0
DYD3_k127_7161129_22 integral membrane protein - - - 0.0005026 49.0
DYD3_k127_7161129_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000832 270.0
DYD3_k127_7161129_4 PAC2 family K07159 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004057 251.0
DYD3_k127_7161129_5 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000253 236.0
DYD3_k127_7161129_6 Forms part of the polypeptide exit tunnel K02930 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000004086 228.0
DYD3_k127_7161129_7 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000004246 223.0
DYD3_k127_7161129_8 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 K03049 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000000000000000000000000000000000000002806 212.0
DYD3_k127_7161129_9 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000000006927 160.0
DYD3_k127_7230815_0 Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'- 5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails K11600 GO:0000177,GO:0000178,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008332 276.0
DYD3_k127_7230815_1 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site K12589 GO:0000177,GO:0000178,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0017091,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354 - 0.0000000000000000000000000000000000000000000000000000000000000000002105 241.0
DYD3_k127_7230815_2 Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome K03679 GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016180,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0032991,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043144,GO:0043170,GO:0043628,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071034,GO:0071043,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354 - 0.00000000000000000000000141 108.0
DYD3_k127_7230815_3 Protein of unknown function, DUF393 - - - 0.00000001304 59.0
DYD3_k127_738967_0 Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 - 5.3.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006323 279.0
DYD3_k127_738967_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 5.99.1.3 0.00000000000000000000000000000000000000000000000000000001011 201.0
DYD3_k127_738967_2 COG1404 Subtilisin-like serine proteases K14645 GO:0005575,GO:0005576 - 0.0000001095 62.0
DYD3_k127_769706_0 Amidohydrolase family - - - 4.599e-231 729.0
DYD3_k127_769706_1 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009946 353.0
DYD3_k127_769706_2 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 315.0
DYD3_k127_769706_3 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001054 278.0
DYD3_k127_769706_4 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000163 232.0
DYD3_k127_769706_5 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000054 220.0
DYD3_k127_769706_6 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000319 159.0
DYD3_k127_769706_7 methylamine metabolic process K03885,K15977 - 1.6.99.3 0.0000000000000000000000000000000000001392 147.0
DYD3_k127_769706_8 HxlR-like helix-turn-helix - - - 0.0000000000000003658 85.0
DYD3_k127_769706_9 Belongs to the SUI1 family K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000007236 75.0
DYD3_k127_785548_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 4.373e-280 886.0
DYD3_k127_785548_1 Fructose-bisphosphate aldolase class-II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 457.0
DYD3_k127_785548_10 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000004563 270.0
DYD3_k127_785548_11 May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity K06965 GO:0000956,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0034661,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070651,GO:0070966,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000003254 257.0
DYD3_k127_785548_12 Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate K06989 - 1.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000002943 234.0
DYD3_k127_785548_13 S-adenosyl-L-methionine-dependent transferase that acts as a component of the wyosine derivatives biosynthesis pathway. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S-adenosyl-L-methionine to 4-demethylwyosine (imG-14), forming 7-aminocarboxypropyl-demethylwyosine (wybutosine-86) at position 37 of tRNA(Phe) K07055 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.5.1.114 0.000000000000000000000000000000000000000000000000000000001613 211.0
DYD3_k127_785548_14 Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline K01281 - 3.4.14.11 0.000000000000000000000000000000000000000000000000000000001873 222.0
DYD3_k127_785548_15 Involved in the catabolism of quinolinic acid (QA) K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000003423 209.0
DYD3_k127_785548_16 Acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000001149 204.0
DYD3_k127_785548_17 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000000001542 191.0
DYD3_k127_785548_18 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000434 175.0
DYD3_k127_785548_19 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000002482 171.0
DYD3_k127_785548_2 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 435.0
DYD3_k127_785548_20 Subtilase family K17734 - - 0.0000000000000000000000000000000000000001348 169.0
DYD3_k127_785548_21 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000002638 167.0
DYD3_k127_785548_22 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000006632 164.0
DYD3_k127_785548_23 pre-rRNA processing protein involved in ribosome biogenesis K09140 - - 0.00000000000000000000000000000000000002438 151.0
DYD3_k127_785548_24 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000007239 130.0
DYD3_k127_785548_25 Methyltransferase type 11 - - - 0.000000000000000000000000000002717 128.0
DYD3_k127_785548_26 esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000007762 129.0
DYD3_k127_785548_27 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000000000003801 130.0
DYD3_k127_785548_28 Belongs to the eukaryotic ribosomal protein eL18 family K02883 - - 0.000000000000000000000000002006 117.0
DYD3_k127_785548_29 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000004284 117.0
DYD3_k127_785548_3 COG0471 Di- and tricarboxylate transporters - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 446.0
DYD3_k127_785548_30 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000001707 108.0
DYD3_k127_785548_31 C-terminal domain of CHU protein family - - - 0.00000000000000000001887 106.0
DYD3_k127_785548_32 Prolyl oligopeptidase family K01278,K06889 - 3.4.14.5 0.00000000000000000004069 102.0
DYD3_k127_785548_33 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03058 GO:0000428,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008270,GO:0030880,GO:0032991,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.000000000000000006907 86.0
DYD3_k127_785548_34 Rhomboid family K19225 - 3.4.21.105 0.000000000000002058 87.0
DYD3_k127_785548_35 Domain of unknown function (DUF4332) - - - 0.00000000000001001 83.0
DYD3_k127_785548_36 - - - - 0.00000000000006836 74.0
DYD3_k127_785548_37 TVP38 TMEM64 family inner membrane protein ydjZ - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000118 80.0
DYD3_k127_785548_38 DNA recombination K09760 - - 0.000000000002264 79.0
DYD3_k127_785548_39 Winged helix-turn-helix DNA-binding - - - 0.000000000004112 77.0
DYD3_k127_785548_4 Helix-hairpin-helix DNA-binding motif class 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 426.0
DYD3_k127_785548_40 HxlR-like helix-turn-helix - - - 0.00000000006106 71.0
DYD3_k127_785548_41 Belongs to the eukaryotic ribosomal protein eL40 family K02927 - - 0.00000000009183 68.0
DYD3_k127_785548_42 protein conserved in archaea - - - 0.000000002979 70.0
DYD3_k127_785548_43 protein conserved in archaea - - - 0.00000006347 66.0
DYD3_k127_785548_44 ACT domain K09707 - - 0.000002048 56.0
DYD3_k127_785548_45 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000002329 61.0
DYD3_k127_785548_46 TonB-dependent receptor - - - 0.0003012 52.0
DYD3_k127_785548_5 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 411.0
DYD3_k127_785548_6 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004252 371.0
DYD3_k127_785548_7 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004614 359.0
DYD3_k127_785548_8 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 332.0
DYD3_k127_785548_9 Voltage gated chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 308.0
DYD3_k127_82217_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 371.0
DYD3_k127_82217_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009826 361.0
DYD3_k127_82217_10 PQQ enzyme repeat K05889,K12132 - 1.1.2.6,2.7.11.1 0.000000000000000000000000000000137 145.0
DYD3_k127_82217_11 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.0000000000000000000000001303 107.0
DYD3_k127_82217_12 - - - - 0.0000000001611 74.0
DYD3_k127_82217_13 Sugar-specific transcriptional regulator TrmB - - - 0.000000009933 69.0
DYD3_k127_82217_14 Spore coat protein CotH K20276 - - 0.00000002094 67.0
DYD3_k127_82217_15 protein conserved in archaea - - - 0.00000004316 64.0
DYD3_k127_82217_2 Glycosyltransferase, group 2 family protein K12992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 309.0
DYD3_k127_82217_3 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002458 298.0
DYD3_k127_82217_4 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003866 299.0
DYD3_k127_82217_5 PFAM ABC transporter related K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004587 263.0
DYD3_k127_82217_6 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000264 199.0
DYD3_k127_82217_7 Glycosyltransferase like family 2 K07011 - - 0.00000000000000000000000000000000000000000000001239 184.0
DYD3_k127_82217_8 PFAM ABC-2 type transporter K01992,K09690 - - 0.00000000000000000000000000000000000000000000008402 178.0
DYD3_k127_82217_9 Glycosyl transferase family group 2 K07011 - - 0.0000000000000000000000000000000000006115 158.0
DYD3_k127_828055_0 FAD dependent oxidoreductase K00313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 351.0
DYD3_k127_828055_1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S - - - 0.000000000000000000000913 110.0
DYD3_k127_828055_2 Peptidyl-prolyl cis-trans K01802,K03775 - 5.2.1.8 0.0000001017 57.0
DYD3_k127_863712_0 Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea K00096 - 1.1.1.261 0.000000000000000000000000000000000000000000000000000000000000000000005374 239.0
DYD3_k127_863712_1 glucose sorbosone - - - 0.0000000000000000000000000000000000000000211 170.0
DYD3_k127_863712_2 Belongs to the UPF0179 family K09730 - - 0.000000000000000008511 89.0
DYD3_k127_863712_3 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000002863 69.0
DYD3_k127_863712_4 Protein of unknown function (DUF2934) - - - 0.0006758 48.0
DYD3_k127_875995_0 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000006836 198.0
DYD3_k127_875995_1 LysM domain - - - 0.0000000000000000000000000000000000000000002288 165.0
DYD3_k127_875995_2 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000005876 132.0
DYD3_k127_875995_3 AhpC/TSA family - - - 0.000000000000000000000000001944 121.0
DYD3_k127_875995_4 Catalase-related immune-responsive K03781 - 1.11.1.6 0.000000000000000000000000003736 115.0
DYD3_k127_875995_5 phosphorelay signal transduction system K02488 - 2.7.7.65 0.00000000000003597 81.0
DYD3_k127_882016_0 Domain of unknown function (DUF4162) K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001778 277.0
DYD3_k127_882016_1 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000001232 248.0
DYD3_k127_882016_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000001165 235.0
DYD3_k127_882016_3 Transport permease protein K01992 - - 0.00000000000000000000001036 117.0
DYD3_k127_882016_4 Phosphoesterase PA-phosphatase - - - 0.0000000000000000003309 98.0
DYD3_k127_882016_5 Phenazine biosynthesis-like domain-containing protein - GO:0001894,GO:0001932,GO:0001933,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007586,GO:0008150,GO:0008285,GO:0009892,GO:0009966,GO:0009968,GO:0010563,GO:0010605,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010669,GO:0010717,GO:0010719,GO:0017015,GO:0019220,GO:0019222,GO:0022600,GO:0023051,GO:0023057,GO:0030277,GO:0030334,GO:0030336,GO:0030512,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032501,GO:0032879,GO:0040012,GO:0040013,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0042802,GO:0044424,GO:0044464,GO:0045595,GO:0045596,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051270,GO:0051271,GO:0060249,GO:0060255,GO:0060390,GO:0060392,GO:0060393,GO:0060394,GO:0065007,GO:0065008,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:1903844,GO:1903845,GO:2000026,GO:2000145,GO:2000146 - 0.000001485 52.0
DYD3_k127_882016_6 DNA binding protein - - - 0.000005234 56.0
DYD3_k127_882016_7 ChaB K06197 - - 0.00004286 49.0
DYD3_k127_882016_8 exo-alpha-(2->6)-sialidase activity - - - 0.00008521 55.0
DYD3_k127_900781_0 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA K04799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 368.0
DYD3_k127_900781_1 Oxidoreductase molybdopterin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000001447 241.0
DYD3_k127_900781_2 Mannosyltransferase (PIG-V) - - - 0.0000000107 62.0
DYD3_k127_901876_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003172 338.0
DYD3_k127_901876_1 Belongs to the HesB IscA family K15724 - - 0.000000000000000000000006729 107.0
DYD3_k127_973695_0 Uncharacterized protein family (UPF0051) K09014 - - 1.959e-247 770.0
DYD3_k127_973695_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 507.0
DYD3_k127_973695_10 - - - - 0.000000000000000000000000000000000000000000000001127 185.0
DYD3_k127_973695_11 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000000007576 165.0
DYD3_k127_973695_12 Thiopurine S-methyltransferase (TPMT) - - - 0.000000000000000000000000000000000000003168 154.0
DYD3_k127_973695_13 2 iron, 2 sulfur cluster binding - - - 0.00000000000000000000000000000000000001383 149.0
DYD3_k127_973695_14 CcmB protein K02194 - - 0.000000000000000000000000000000000000106 157.0
DYD3_k127_973695_15 ABC-type multidrug transport system, ATPase component K01990 - - 0.0000000000000000000000000000000000001281 149.0
DYD3_k127_973695_16 COG0822 NifU homolog involved in Fe-S cluster formation K04488 - - 0.000000000000000000000000000002582 137.0
DYD3_k127_973695_17 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000002442 135.0
DYD3_k127_973695_18 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.000000000000000000000001267 112.0
DYD3_k127_973695_19 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000523 63.0
DYD3_k127_973695_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005441 488.0
DYD3_k127_973695_20 TonB-dependent receptor K02014 - - 0.0000006715 61.0
DYD3_k127_973695_21 - - - - 0.0000009546 61.0
DYD3_k127_973695_22 TonB-dependent receptor K02014,K16089 - - 0.00006354 54.0
DYD3_k127_973695_23 TonB-dependent Receptor Plug - - - 0.0002534 53.0
DYD3_k127_973695_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 397.0
DYD3_k127_973695_4 ATPase activity K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 349.0
DYD3_k127_973695_5 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 367.0
DYD3_k127_973695_6 Transketolase K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009775 342.0
DYD3_k127_973695_7 PFAM Transketolase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007269 324.0
DYD3_k127_973695_8 Sodium/calcium exchanger protein K07301 - - 0.00000000000000000000000000000000000000000000000000000000000000005214 239.0
DYD3_k127_973695_9 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000205 230.0
DYD3_k127_975711_0 Histidine kinase - - - 0.0000000000000000001815 98.0
DYD3_k127_990253_0 RNA signal recognition particle 4.5S RNA - - - 0.0000000000000000000000000000000000001002 151.0
DYD3_k127_990253_1 DoxX-like family - - - 0.000000000000000001569 91.0
DYD3_k127_990253_2 Domain of unknown function (DU1801) - - - 0.0000000054 63.0
DYD3_k127_99243_0 Glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009286 299.0
DYD3_k127_99243_1 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000002174 178.0
DYD3_k127_99243_2 InterPro IPR014922 - - - 0.000000000000000000000000000001056 133.0
DYD3_k127_99243_3 permease - - - 0.000000000000000000000000000001172 135.0
DYD3_k127_99243_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000001192 121.0
DYD3_k127_99243_5 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000002189 109.0
DYD3_k127_99243_6 HAD-superfamily hydrolase, subfamily IIB - - - 0.00000000000000005215 89.0
DYD3_k127_99243_7 - - - - 0.0005679 45.0
DYD3_k127_99574_0 Reversibly glycosylated polypeptide - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 413.0
DYD3_k127_99574_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000003074 147.0
DYD3_k127_99574_2 integral membrane protein - - - 0.0000000000000000000000000002313 129.0
DYD3_k127_99574_3 PFAM Glycosyl transferase family 2 K07027 - - 0.0000000000000000000008153 108.0