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Overview

ID MAG00977
Name DYD3_bin.54
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Chloroflexota
Class Limnocylindria
Order QHBO01
Family QHBO01
Genus
Species
Assembly information
Completeness (%) 83.98
Contamination (%) 0.79
GC content (%) 71.0
N50 (bp) 12,312
Genome size (bp) 2,108,480

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1897

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1011994_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 9.412e-274 857.0
DYD3_k127_1011994_1 Saccharopine dehydrogenase K00290 - 1.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 501.0
DYD3_k127_1011994_10 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000001871 157.0
DYD3_k127_1011994_11 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.00000000000000000000000000000000000002739 157.0
DYD3_k127_1011994_12 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000002084 114.0
DYD3_k127_1011994_13 - - - - 0.000000000000000000000001608 107.0
DYD3_k127_1011994_14 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000003194 111.0
DYD3_k127_1011994_15 Cytochrome C and Quinol oxidase polypeptide I K00404 - 1.9.3.1 0.00000000000000000000004144 114.0
DYD3_k127_1011994_16 galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.0000009448 51.0
DYD3_k127_1011994_17 Cytochrome c K00368 - 1.7.2.1 0.0000288 53.0
DYD3_k127_1011994_18 Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and or cell division K08304 GO:0000270,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016787,GO:0016798,GO:0019867,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0042597,GO:0043170,GO:0044425,GO:0044459,GO:0044462,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.00005403 47.0
DYD3_k127_1011994_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 351.0
DYD3_k127_1011994_20 Prolyl oligopeptidase family - - - 0.0007316 52.0
DYD3_k127_1011994_3 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002131 285.0
DYD3_k127_1011994_4 ZIP Zinc transporter K16267 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001067 258.0
DYD3_k127_1011994_5 PFAM Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000001127 233.0
DYD3_k127_1011994_6 Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000001872 232.0
DYD3_k127_1011994_7 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000007772 206.0
DYD3_k127_1011994_8 Pfam Methyltransferase - - - 0.00000000000000000000000000000000000000000003938 175.0
DYD3_k127_1011994_9 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000007133 162.0
DYD3_k127_1021776_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 333.0
DYD3_k127_1021776_1 Glycosyl transferase 4-like domain K08256 - 2.4.1.345 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 328.0
DYD3_k127_1021776_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006112 291.0
DYD3_k127_1021776_3 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000001016 226.0
DYD3_k127_1021776_4 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000003436 217.0
DYD3_k127_1021776_5 SMART phosphoesterase PHP domain protein - - - 0.000000000000000000000000001503 118.0
DYD3_k127_1105788_0 glutamine synthetase K01915 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0044464,GO:0050001,GO:0071944 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 313.0
DYD3_k127_1105788_1 Bacterial sugar transferase K13012 - - 0.00000000000000000000000000000000000000000000003053 183.0
DYD3_k127_1105788_2 PFAM O-antigen polymerase K18814 - - 0.000000000000005069 88.0
DYD3_k127_1105788_3 Acylneuraminate cytidylyltransferase K00983 - 2.7.7.43 0.0000000627 59.0
DYD3_k127_110833_0 Belongs to the dCTP deaminase family K01494 GO:0003674,GO:0003824,GO:0004170,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0019239,GO:0033973,GO:0047429 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000003175 266.0
DYD3_k127_110833_1 water channel activity K02440,K06188,K09874 - - 0.0000000000000000000000000000000000000000000000000000000000006839 220.0
DYD3_k127_110833_10 Transcriptional regulator K10914 - - 0.0000000000000003013 85.0
DYD3_k127_110833_11 PFAM blue (type 1) copper domain protein - - - 0.000000000000001536 85.0
DYD3_k127_110833_12 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.000000000433 63.0
DYD3_k127_110833_13 Cupredoxin-like domain - - - 0.0009868 47.0
DYD3_k127_110833_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000582 207.0
DYD3_k127_110833_3 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000003275 166.0
DYD3_k127_110833_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000175 174.0
DYD3_k127_110833_5 domain, Protein - - - 0.0000000000000000000000000000000000000000848 170.0
DYD3_k127_110833_6 Cytochrome c biogenesis protein K06196 - - 0.00000000000000000000000000000002916 138.0
DYD3_k127_110833_7 Protein of unknown function, DUF - - - 0.00000000000000000000000000001801 123.0
DYD3_k127_110833_8 Bacterial protein of unknown function (DUF881) - - - 0.00000000000000000000001151 111.0
DYD3_k127_110833_9 Peptidase MA superfamily - - - 0.00000000000000000006194 104.0
DYD3_k127_1235572_0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K01214 - 3.2.1.68 8.967e-306 969.0
DYD3_k127_1235572_1 synthase K06044 - 5.4.99.15 2.984e-287 908.0
DYD3_k127_1235572_10 aromatic amino acid beta-eliminating lyase threonine aldolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000786 419.0
DYD3_k127_1235572_11 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02472,K13015 - 1.1.1.136,1.1.1.336 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 424.0
DYD3_k127_1235572_12 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791,K13019 - 5.1.3.14,5.1.3.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005872 392.0
DYD3_k127_1235572_13 PFAM Glucose Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 384.0
DYD3_k127_1235572_14 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 341.0
DYD3_k127_1235572_15 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 318.0
DYD3_k127_1235572_16 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001686 281.0
DYD3_k127_1235572_17 Phosphotransferase enzyme family K00700,K05343,K16146 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016310,GO:0034637,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046835,GO:0071704,GO:0071944,GO:1901576 2.4.1.18,2.7.1.175,3.2.1.1,5.4.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000003428 272.0
DYD3_k127_1235572_18 TIGRFAM MazG family protein K02499 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005809 263.0
DYD3_k127_1235572_19 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005813 259.0
DYD3_k127_1235572_2 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 2.878e-283 888.0
DYD3_k127_1235572_20 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000127 250.0
DYD3_k127_1235572_21 PFAM transferase hexapeptide repeat containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000007697 221.0
DYD3_k127_1235572_22 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000001312 201.0
DYD3_k127_1235572_23 PFAM DNA repair protein RadC K03630 - - 0.00000000000000000000000000000000000000000000001662 178.0
DYD3_k127_1235572_24 Formyl transferase K11175 - 2.1.2.2 0.000000000000000000000000000000000006993 146.0
DYD3_k127_1235572_25 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000002824 137.0
DYD3_k127_1235572_26 Double zinc ribbon - - - 0.0000000000000000000000000000102 126.0
DYD3_k127_1235572_27 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000006059 126.0
DYD3_k127_1235572_28 polysaccharide biosynthetic process - - - 0.000000000000000000000000004671 128.0
DYD3_k127_1235572_29 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000000000000000000001573 113.0
DYD3_k127_1235572_3 Maltogenic Amylase, C-terminal domain K05343 - 3.2.1.1,5.4.99.16 1.355e-269 842.0
DYD3_k127_1235572_30 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000004039 98.0
DYD3_k127_1235572_31 Glycosyl hydrolases family 18 - - - 0.000000000000000004022 100.0
DYD3_k127_1235572_32 Subtilase family - - - 0.00000000001981 77.0
DYD3_k127_1235572_33 D-glucuronyl C5-epimerase C-terminus - - - 0.0000000000363 74.0
DYD3_k127_1235572_34 TIGRFAM Outer membrane protein K13735,K20276 - - 0.00000001983 68.0
DYD3_k127_1235572_35 CAAX protease self-immunity K07052 - - 0.0000003023 62.0
DYD3_k127_1235572_36 N-Acetylmuramoyl-L-alanine amidase - - - 0.0000005401 64.0
DYD3_k127_1235572_37 Glycosyl transferase 4-like domain - - - 0.00001996 56.0
DYD3_k127_1235572_38 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.00002358 49.0
DYD3_k127_1235572_4 Domain of unknown function (DUF3459) K01236 - 3.2.1.141 4.354e-234 744.0
DYD3_k127_1235572_5 4-alpha-glucanotransferase K00700,K00705,K02438,K06044 - 2.4.1.18,2.4.1.25,3.2.1.196,5.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 605.0
DYD3_k127_1235572_6 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 596.0
DYD3_k127_1235572_7 Domain of unknown function (DUF3416) K16147 - 2.4.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003747 586.0
DYD3_k127_1235572_8 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 493.0
DYD3_k127_1235572_9 MreB/Mbl protein K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009489 454.0
DYD3_k127_1295749_0 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 299.0
DYD3_k127_1295749_1 diguanylate cyclase K21023 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000007113 208.0
DYD3_k127_1295749_2 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000001232 149.0
DYD3_k127_1295749_3 Ethyl tert-butyl ether degradation - - - 0.00000000000000000003218 94.0
DYD3_k127_1354468_0 PFAM Adenylyl cyclase class-3 4 guanylyl cyclase - - - 7.121e-196 657.0
DYD3_k127_1354468_1 PFAM oxidoreductase molybdopterin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 466.0
DYD3_k127_1354468_2 TIGRFAM phenylacetate-CoA oxygenase, PaaG subunit K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 446.0
DYD3_k127_1354468_3 Sugar-specific transcriptional regulator TrmB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003039 270.0
DYD3_k127_1354468_4 PFAM diacylglycerol kinase catalytic region - - - 0.0000000000000000000000000000000000000000000001278 184.0
DYD3_k127_1354468_5 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000004167 189.0
DYD3_k127_1354468_6 Hydrolase of the alpha beta-hydrolase K07020 - - 0.000000000000000000001441 101.0
DYD3_k127_1354468_7 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000002914 111.0
DYD3_k127_1354468_8 phenylacetate catabolic process K02610 - - 0.0000000000000000005763 89.0
DYD3_k127_1354468_9 Uncharacterized protein conserved in bacteria (DUF2255) - - - 0.0000000002941 66.0
DYD3_k127_1366402_0 NAD(P)-binding Rossmann-like domain - - - 7.219e-196 637.0
DYD3_k127_1366402_1 COG3335 Transposase and inactivated derivatives K07494 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008079 464.0
DYD3_k127_1366402_2 Conserved TM helix - - - 0.000000000000000000000000000000000000000000000000000000000000000007561 248.0
DYD3_k127_1366402_3 efflux transmembrane transporter activity K02004 - - 0.00000003469 55.0
DYD3_k127_1408000_0 Pregnancy-associated plasma protein-A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008351 285.0
DYD3_k127_1408000_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002566 284.0
DYD3_k127_1408000_2 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.000000000000000000000000000000000000000000000000000000000000000001586 237.0
DYD3_k127_1408000_3 Domain of unknown function (DUF2520) - - - 0.0000000000000000000000000000000000000001263 161.0
DYD3_k127_1408000_4 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000000000000000000000000005791 139.0
DYD3_k127_1408000_5 PFAM TadE family protein - - - 0.000000000000000000005656 108.0
DYD3_k127_1408000_6 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000006311 71.0
DYD3_k127_1408000_7 TadE-like protein - - - 0.00008728 52.0
DYD3_k127_1408000_8 TadE-like protein - - - 0.0005911 49.0
DYD3_k127_1416884_0 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000001187 167.0
DYD3_k127_1416884_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859,K07566 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24,2.7.7.87 0.00000000000000000000000000000000201 142.0
DYD3_k127_1416884_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000008031 125.0
DYD3_k127_1416884_3 SAF K02279 - - 0.000000000141 71.0
DYD3_k127_1416884_4 PFAM TadE family protein - - - 0.0000008795 59.0
DYD3_k127_1416884_5 Putative Flp pilus-assembly TadE/G-like - - - 0.0002152 55.0
DYD3_k127_1447560_0 Carbohydrate phosphorylase K00688,K00691 - 2.4.1.1,2.4.1.8 8.229e-197 636.0
DYD3_k127_1447560_1 TIGRFAM cysteine desulfurase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 471.0
DYD3_k127_1447560_2 Cytochrome b/b6/petB K03891 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 431.0
DYD3_k127_1447560_3 Rieske [2Fe-2S] domain K03890 - - 0.00000000000000000000000000000000000000000000000000000000000000000004157 241.0
DYD3_k127_1447560_4 cytochrome C K03889 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000001346 199.0
DYD3_k127_1447560_5 SMART Peptidoglycan-binding LysM - - - 0.000000000000000000000000000000008162 134.0
DYD3_k127_1447560_6 Rhodanese Homology Domain - - - 0.000000851 59.0
DYD3_k127_144980_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 1.732e-227 719.0
DYD3_k127_144980_1 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 549.0
DYD3_k127_144980_10 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001026 278.0
DYD3_k127_144980_11 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001577 245.0
DYD3_k127_144980_12 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000002295 258.0
DYD3_k127_144980_13 FabA-like domain K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000001728 190.0
DYD3_k127_144980_14 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000264 193.0
DYD3_k127_144980_15 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000857 177.0
DYD3_k127_144980_16 Superoxide dismutase K00518 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.15.1.1 0.000000000000000000000000000000000000000663 156.0
DYD3_k127_144980_17 NUDIX domain - - - 0.00000000000000000000000000002698 130.0
DYD3_k127_144980_18 Sigma-70, region 4 - - - 0.00000000000000000000000000009741 128.0
DYD3_k127_144980_19 UPF0678 fatty acid-binding protein-like protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000003174 107.0
DYD3_k127_144980_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 480.0
DYD3_k127_144980_20 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000003807 105.0
DYD3_k127_144980_21 Thioesterase K07107 - - 0.00000000000000000001246 101.0
DYD3_k127_144980_22 Putative stress-induced transcription regulator - - - 0.00000000000000001497 91.0
DYD3_k127_144980_23 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000001114 70.0
DYD3_k127_144980_24 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000002816 67.0
DYD3_k127_144980_25 - - - - 0.0000007077 60.0
DYD3_k127_144980_26 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000004704 52.0
DYD3_k127_144980_27 N-4 methylation of cytosine K00590 - 2.1.1.113 0.000009445 58.0
DYD3_k127_144980_3 Helix-hairpin-helix DNA-binding, class 1 K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 478.0
DYD3_k127_144980_4 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 432.0
DYD3_k127_144980_5 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 399.0
DYD3_k127_144980_6 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007249 368.0
DYD3_k127_144980_7 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 352.0
DYD3_k127_144980_8 Aldehyde dehydrogenase K00128 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000649 358.0
DYD3_k127_144980_9 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 317.0
DYD3_k127_1467709_0 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 546.0
DYD3_k127_1467709_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008957 346.0
DYD3_k127_1467709_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000002779 204.0
DYD3_k127_1467709_3 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000001832 193.0
DYD3_k127_1467709_4 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000001409 169.0
DYD3_k127_1467709_5 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000003874 148.0
DYD3_k127_1467709_6 Ribosomal protein L35 K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000001748 70.0
DYD3_k127_1467709_7 Colicin V production protein - - - 0.000004992 56.0
DYD3_k127_1469737_0 PFAM ABC transporter related K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 543.0
DYD3_k127_1469737_1 Alkylhydroperoxidase AhpD family core domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001038 259.0
DYD3_k127_1469737_2 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000001032 244.0
DYD3_k127_1469737_3 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000008107 228.0
DYD3_k127_1469737_4 CGNR zinc finger - - - 0.0000000000000000000000000000000001313 139.0
DYD3_k127_1469737_5 - - - - 0.00000000000000000000000000000001559 134.0
DYD3_k127_1469737_6 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000001692 109.0
DYD3_k127_1469737_7 HesB YadR YfhF-family protein - - - 0.00002134 54.0
DYD3_k127_1469737_8 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 - 1.2.4.2 0.00002357 51.0
DYD3_k127_1487357_0 DNA polymerase LigD polymerase domain K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 457.0
DYD3_k127_1487357_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000004716 93.0
DYD3_k127_1487357_2 MazF family transcriptional regulator K07171 - - 0.00000000004335 68.0
DYD3_k127_1487357_3 SnoaL-like polyketide cyclase - - - 0.0000000001032 70.0
DYD3_k127_1568786_0 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889 492.0
DYD3_k127_1568786_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 374.0
DYD3_k127_1568786_10 - - - - 0.00001114 53.0
DYD3_k127_1568786_11 FAD-dependent oxidoreductase K09471 - - 0.0002009 53.0
DYD3_k127_1568786_2 7TM receptor with intracellular HD hydrolase K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 360.0
DYD3_k127_1568786_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000132 184.0
DYD3_k127_1568786_4 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000001947 174.0
DYD3_k127_1568786_5 PFAM histidine triad (HIT) protein K02503 - - 0.000000000000000000000000000000000000001232 149.0
DYD3_k127_1568786_6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity - - - 0.000000000000000000000000000000000001919 152.0
DYD3_k127_1568786_7 Aspartyl-tRNA amidotransferase K09117 - - 0.0000000000000000000000000000004215 129.0
DYD3_k127_1568786_8 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000003963 97.0
DYD3_k127_1568786_9 Ribosomal protein S21 K02970 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000001234 84.0
DYD3_k127_1593371_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005747 469.0
DYD3_k127_1593371_1 sigma factor activity K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 423.0
DYD3_k127_1593371_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000001657 248.0
DYD3_k127_1593371_3 YCII-related domain - - - 0.00000000000000000002488 97.0
DYD3_k127_1593371_4 - - - - 0.00000000001721 68.0
DYD3_k127_1642176_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 7.864e-216 688.0
DYD3_k127_1642176_1 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 4.047e-209 685.0
DYD3_k127_1642176_10 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.000000000000000000000000000000000000000000000000008535 189.0
DYD3_k127_1642176_11 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000003243 190.0
DYD3_k127_1642176_12 MOSC domain - - - 0.0000000000000000000000000000000000008618 146.0
DYD3_k127_1642176_13 Probable zinc-ribbon domain - - - 0.00000000000000000000000000000000001695 139.0
DYD3_k127_1642176_14 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000104 137.0
DYD3_k127_1642176_15 Copper binding proteins, plastocyanin/azurin family - - - 0.00000000000000008951 87.0
DYD3_k127_1642176_16 Bacterial transcription activator, effector binding domain - - - 0.00000000000005357 79.0
DYD3_k127_1642176_17 Protein of unknown function (DUF1232) - - - 0.0000000000002353 79.0
DYD3_k127_1642176_18 COG3404 Methenyl tetrahydrofolate cyclohydrolase - - - 0.0002681 51.0
DYD3_k127_1642176_2 Participates in initiation and elongation during chromosome replication K02314 GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 478.0
DYD3_k127_1642176_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 464.0
DYD3_k127_1642176_4 IMP dehydrogenase / GMP reductase domain K00088 - 1.1.1.205 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 395.0
DYD3_k127_1642176_5 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005264 372.0
DYD3_k127_1642176_6 DNA photolyase K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 350.0
DYD3_k127_1642176_7 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000006372 256.0
DYD3_k127_1642176_8 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000005334 245.0
DYD3_k127_1642176_9 COGs COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000006143 240.0
DYD3_k127_1655789_0 Nucleotidyl transferase K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 485.0
DYD3_k127_1655789_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000003384 70.0
DYD3_k127_1655789_2 peptidase - - - 0.0005568 53.0
DYD3_k127_1666485_0 Creatinase/Prolidase N-terminal domain K01271,K01274 - 3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009517 381.0
DYD3_k127_1666485_1 Belongs to the peptidase S8 family K14647 - - 0.00000000000000000000000000000000000000000006484 185.0
DYD3_k127_1666485_2 D-glucuronyl C5-epimerase C-terminus - - - 0.00000009311 66.0
DYD3_k127_1766946_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 5.624e-213 674.0
DYD3_k127_1766946_1 calcium, potassium:sodium antiporter activity K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 459.0
DYD3_k127_1766946_10 response to heat K07090 - - 0.000000000000000000000000001462 118.0
DYD3_k127_1766946_2 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 362.0
DYD3_k127_1766946_3 PFAM oxidoreductase, molybdopterin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006362 319.0
DYD3_k127_1766946_4 PFAM glycoside hydrolase family 10 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 338.0
DYD3_k127_1766946_5 Belongs to the NUDIX hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003622 279.0
DYD3_k127_1766946_7 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000000000000565 207.0
DYD3_k127_1766946_8 Oxidoreductase FAD-binding domain - - - 0.000000000000000000000000000000000000000000000000000004886 200.0
DYD3_k127_1766946_9 Secreted repeat of unknown function - - - 0.0000000000000000000000000000004474 128.0
DYD3_k127_177636_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 341.0
DYD3_k127_177636_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 318.0
DYD3_k127_177636_10 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000004868 151.0
DYD3_k127_177636_11 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000028 152.0
DYD3_k127_177636_12 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000001434 139.0
DYD3_k127_177636_13 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000004672 119.0
DYD3_k127_177636_14 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000003328 114.0
DYD3_k127_177636_15 Belongs to the UPF0102 family K07460 - - 0.0000000000000000305 86.0
DYD3_k127_177636_16 Belongs to the UPF0109 family K06960 - - 0.00000000000007166 81.0
DYD3_k127_177636_2 Belongs to the universal ribosomal protein uS2 family K02967 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 309.0
DYD3_k127_177636_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003582 291.0
DYD3_k127_177636_4 Belongs to the RNA methyltransferase TrmD family K00554,K01770 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 289.0
DYD3_k127_177636_5 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000007511 249.0
DYD3_k127_177636_6 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000005162 235.0
DYD3_k127_177636_7 SMART PDZ DHR GLGF domain protein K11749 - - 0.0000000000000000000000000000000000000000000000000000000000002641 229.0
DYD3_k127_177636_8 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000007969 206.0
DYD3_k127_177636_9 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000001717 211.0
DYD3_k127_1840531_0 protein involved in exopolysaccharide biosynthesis - - - 1.54e-210 678.0
DYD3_k127_1840531_1 belongs to the thioredoxin family K20543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005949 581.0
DYD3_k127_1840531_10 OsmC-like protein - - - 0.00000000000000000000000000000000000000001115 160.0
DYD3_k127_1840531_11 converts alpha-aldose to the beta-anomer K01785 GO:0003674,GO:0003824,GO:0004034,GO:0005975,GO:0005996,GO:0006006,GO:0006012,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019318,GO:0019320,GO:0019388,GO:0033499,GO:0033554,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0050896,GO:0051716,GO:0071704,GO:1901575 5.1.3.3 0.0000000000000000000000005695 115.0
DYD3_k127_1840531_2 Xaa-Pro aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 518.0
DYD3_k127_1840531_3 Belongs to the binding-protein-dependent transport system permease family K10544 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015749,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0044425,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 435.0
DYD3_k127_1840531_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 389.0
DYD3_k127_1840531_5 ROK family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 334.0
DYD3_k127_1840531_6 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004298 319.0
DYD3_k127_1840531_7 ABC transporter substrate-binding protein K10543 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005975,GO:0005996,GO:0006810,GO:0008150,GO:0008152,GO:0008643,GO:0015749,GO:0015750,GO:0015753,GO:0019321,GO:0030246,GO:0030288,GO:0030313,GO:0031975,GO:0034219,GO:0036094,GO:0042597,GO:0042732,GO:0044238,GO:0044281,GO:0044464,GO:0048029,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005315 299.0
DYD3_k127_1840531_8 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001295 244.0
DYD3_k127_1840531_9 ATPases associated with a variety of cellular activities K10545 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000691 236.0
DYD3_k127_1843684_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 377.0
DYD3_k127_1843684_1 SMART Metal-dependent phosphohydrolase, HD region K01129 - 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001116 256.0
DYD3_k127_1843684_2 NYN domain - - - 0.00000000000000000000000000000000005725 152.0
DYD3_k127_1843684_3 Psort location Cytoplasmic, score - - - 0.00000000000000000000008249 111.0
DYD3_k127_1843684_4 Acylphosphatase K01512 - 3.6.1.7 0.00000000000000001278 90.0
DYD3_k127_1875434_0 Penicillin amidase K01434 - 3.5.1.11 2.598e-224 722.0
DYD3_k127_1875434_1 TIGRFAM methylmalonyl-CoA mutase, large subunit K01848 - 5.4.99.2 6.986e-219 696.0
DYD3_k127_1875434_10 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 307.0
DYD3_k127_1875434_11 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007938 282.0
DYD3_k127_1875434_12 Phosphotriesterase family K07048 - - 0.00000000000000000000000000000000000000000000000000000000000000101 234.0
DYD3_k127_1875434_13 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000007082 207.0
DYD3_k127_1875434_14 Tachylectin - - - 0.0000000000000000000000000000001934 138.0
DYD3_k127_1875434_15 - - - - 0.0000000000000000006149 91.0
DYD3_k127_1875434_16 Dodecin - - - 0.00000000000000009645 87.0
DYD3_k127_1875434_17 - - - - 0.000000001305 72.0
DYD3_k127_1875434_18 Predicted membrane protein (DUF2207) - - - 0.0000169 57.0
DYD3_k127_1875434_2 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 466.0
DYD3_k127_1875434_3 Helix-hairpin-helix domain K04477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
DYD3_k127_1875434_4 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008304 431.0
DYD3_k127_1875434_5 Belongs to the class-I aminoacyl-tRNA synthetase family K15526 - 6.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 394.0
DYD3_k127_1875434_6 PFAM Fatty acid desaturase, type 2 K03921 - 1.14.19.11,1.14.19.2,1.14.19.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 367.0
DYD3_k127_1875434_7 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 355.0
DYD3_k127_1875434_8 Helix-hairpin-helix class 2 (Pol1 family) motifs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 331.0
DYD3_k127_1875434_9 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004074 345.0
DYD3_k127_1981550_0 PFAM Glycoside hydrolase, family 38 K01191,K15524 - 3.2.1.170,3.2.1.24 7.108e-239 772.0
DYD3_k127_1981550_1 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058 575.0
DYD3_k127_1981550_10 KduI/IolB family K03337 - 5.3.1.30 0.0000000000000000000000000000000000000000000000000000002616 207.0
DYD3_k127_1981550_11 Inosose dehydratase K03335 - 4.2.1.44 0.0000000000000000000000000000000000000000000007277 180.0
DYD3_k127_1981550_12 pfam nudix K01515 - 3.6.1.13 0.00000000000000000000000000000000000002226 149.0
DYD3_k127_1981550_13 COG1668 ABC-type Na efflux pump, permease component - - - 0.000000000000000000000000000000002146 145.0
DYD3_k127_1981550_14 Tetratricopeptide repeat - - - 0.000000000000000000000000002088 117.0
DYD3_k127_1981550_2 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 388.0
DYD3_k127_1981550_3 Binding-protein-dependent transport system inner membrane component K10234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007656 306.0
DYD3_k127_1981550_4 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004107 287.0
DYD3_k127_1981550_5 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.0000000000000000000000000000000000000000000000000000000000000000000002339 252.0
DYD3_k127_1981550_6 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000002148 249.0
DYD3_k127_1981550_7 ABC transporter substrate-binding protein K10232 - - 0.00000000000000000000000000000000000000000000000000000000000000000008226 246.0
DYD3_k127_1981550_8 PFAM Binding-protein-dependent transport system inner membrane component K02025,K10233 - - 0.00000000000000000000000000000000000000000000000000000000000000002802 234.0
DYD3_k127_1981550_9 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000001526 225.0
DYD3_k127_1988826_0 Radical SAM superfamily K06937 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005268 464.0
DYD3_k127_1988826_1 PFAM regulatory protein LuxR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006834 389.0
DYD3_k127_1988826_2 lipoprotein biosynthetic process K13292 - - 0.000000000000000000000000000000000000000000000000000000001956 209.0
DYD3_k127_2046115_0 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.514e-244 760.0
DYD3_k127_2046115_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704,GO:0071944,GO:0072350 4.2.1.2 5.937e-236 736.0
DYD3_k127_2046115_2 Alpha-amylase domain K01182,K01187,K01226 - 3.2.1.10,3.2.1.20,3.2.1.93 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 608.0
DYD3_k127_2046115_3 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 401.0
DYD3_k127_2046115_4 adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000009765 145.0
DYD3_k127_2046115_5 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.00000000000000000000000000007682 124.0
DYD3_k127_2046115_6 Domain of unknown function (DUF309) K09763 - - 0.0000000000000000005269 93.0
DYD3_k127_2046115_7 Pfam:DUF59 - - - 0.00000000005509 71.0
DYD3_k127_2046115_8 - - - - 0.000000003555 64.0
DYD3_k127_2046115_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.0001707 49.0
DYD3_k127_2054720_0 Belongs to the glycosyl hydrolase 13 family - - - 7.007e-275 885.0
DYD3_k127_2054720_1 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078 561.0
DYD3_k127_2054720_10 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002247 252.0
DYD3_k127_2054720_11 Domain of unknown function DUF11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002608 274.0
DYD3_k127_2054720_12 Two component transcriptional regulator, LuxR family - - - 0.0000000000000000000000000000000000000000000000000000000000004141 226.0
DYD3_k127_2054720_13 Integral membrane sensor signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000005634 226.0
DYD3_k127_2054720_14 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000003533 162.0
DYD3_k127_2054720_15 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000006429 120.0
DYD3_k127_2054720_16 ubiE/COQ5 methyltransferase family - - - 0.0000000000001041 79.0
DYD3_k127_2054720_17 domain protein - - - 0.00000001667 65.0
DYD3_k127_2054720_2 Cys/Met metabolism PLP-dependent enzyme K00639 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0008890,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 519.0
DYD3_k127_2054720_3 Alpha amylase, catalytic domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008052 507.0
DYD3_k127_2054720_4 Glucose dehydrogenase C-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 368.0
DYD3_k127_2054720_5 PFAM Binding-protein-dependent transport system inner membrane component K02025,K15771 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 354.0
DYD3_k127_2054720_6 PFAM Bacterial extracellular solute-binding protein K15770 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 347.0
DYD3_k127_2054720_7 PFAM Binding-protein-dependent transport system inner membrane component K15772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004326 342.0
DYD3_k127_2054720_8 PFAM Mannosyl oligosaccharide glucosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 308.0
DYD3_k127_2054720_9 periplasmic binding protein LacI transcriptional regulator K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001562 266.0
DYD3_k127_2066943_0 ABC-type branched-chain amino acid transport systems, periplasmic component K01999,K07407 - 3.2.1.22 1.974e-221 695.0
DYD3_k127_2066943_1 alcohol dehydrogenase K00008,K08322 - 1.1.1.14,1.1.1.380 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 565.0
DYD3_k127_2066943_2 L-phenylalanine transmembrane transporter activity K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009409 484.0
DYD3_k127_2066943_3 Metallo-beta-lactamase superfamily K05555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005997 452.0
DYD3_k127_2066943_4 Belongs to the binding-protein-dependent transport system permease family K01997,K11956 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 417.0
DYD3_k127_2066943_5 Short-chain dehydrogenase reductase sdr K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006055 321.0
DYD3_k127_2066943_6 branched-chain amino acid transmembrane transporter activity K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 321.0
DYD3_k127_2066943_7 PFAM ABC transporter related K01995,K11957 - - 0.0000000000000000000000000000000000004117 150.0
DYD3_k127_2066943_8 Dehydrogenase K05711 - 1.3.1.87 0.0000000000000000000000000000000000007227 147.0
DYD3_k127_2066943_9 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000004488 138.0
DYD3_k127_209754_0 TIGRFAM RNA polymerase sigma-54 factor, RpoN K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 351.0
DYD3_k127_209754_1 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000766 321.0
DYD3_k127_209754_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000006449 205.0
DYD3_k127_209754_3 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360 2.7.4.6 0.0000000000000000000000000000000000000000000000000177 190.0
DYD3_k127_209754_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000008131 141.0
DYD3_k127_209754_5 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.00000000000000000001669 99.0
DYD3_k127_209754_6 repeat protein - - - 0.00000004638 62.0
DYD3_k127_209754_7 - - - - 0.00003 56.0
DYD3_k127_2203933_0 Putative modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 516.0
DYD3_k127_2203933_1 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002039 259.0
DYD3_k127_2203933_2 Glycosyl transferase, family 2 K19003 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006629,GO:0006643,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046872,GO:0071704,GO:1901576 2.4.1.336 0.000000000000000000000000000000000000000001624 173.0
DYD3_k127_2203933_3 Amidohydrolase family - - - 0.0000000000000000000000001516 122.0
DYD3_k127_2203933_4 Major facilitator superfamily - - - 0.0000000000000000000000002248 119.0
DYD3_k127_2203933_5 Bacterial protein of unknown function (DUF881) - GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000001118 99.0
DYD3_k127_2203933_6 Bacterial protein of unknown function (DUF951) - - - 0.00000000000000002816 86.0
DYD3_k127_2203933_7 PFAM Major Facilitator Superfamily - - - 0.00000001294 62.0
DYD3_k127_2216229_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 390.0
DYD3_k127_2216229_1 PFAM Sodium calcium exchanger membrane region K07301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004243 280.0
DYD3_k127_2216229_2 Cellulose biosynthesis protein BcsQ K02282 - - 0.0000000000000000000000000000001583 139.0
DYD3_k127_2216229_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.00000000000000000000000006321 113.0
DYD3_k127_2216229_4 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000007534 113.0
DYD3_k127_2216229_5 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000001047 110.0
DYD3_k127_2216229_6 Staphylococcal nuclease homologues - - - 0.0000000000000000000004522 98.0
DYD3_k127_2216229_7 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000004802 97.0
DYD3_k127_2247930_0 Belongs to the ClpA ClpB family K03696 - - 0.0 1032.0
DYD3_k127_2247930_1 PFAM oxidoreductase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 528.0
DYD3_k127_2247930_10 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000006819 202.0
DYD3_k127_2247930_11 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000008118 168.0
DYD3_k127_2247930_12 - K11477 - - 0.00000000000000000000000000000000000002515 149.0
DYD3_k127_2247930_13 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000007601 117.0
DYD3_k127_2247930_14 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000003218 87.0
DYD3_k127_2247930_15 - - - - 0.0000009548 61.0
DYD3_k127_2247930_16 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000007581 49.0
DYD3_k127_2247930_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 402.0
DYD3_k127_2247930_3 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 310.0
DYD3_k127_2247930_4 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 297.0
DYD3_k127_2247930_5 SMART Nucleotide binding protein, PINc - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002202 281.0
DYD3_k127_2247930_6 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002622 260.0
DYD3_k127_2247930_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000133 262.0
DYD3_k127_2247930_8 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000002131 242.0
DYD3_k127_2247930_9 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000586 199.0
DYD3_k127_2252018_0 PFAM ABC transporter related K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 569.0
DYD3_k127_2252018_1 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488 GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006152,GO:0006154,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009156,GO:0009161,GO:0009163,GO:0009164,GO:0009165,GO:0009167,GO:0009168,GO:0009987,GO:0015949,GO:0015950,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0032261,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0043173,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046100,GO:0046101,GO:0046102,GO:0046103,GO:0046112,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 347.0
DYD3_k127_2252018_10 Adenosine deaminase K01488 - 3.5.4.4 0.00000000000000000000009878 102.0
DYD3_k127_2252018_11 GlcNAc-PI de-N-acetylase K22135 - - 0.0000000000000000006792 97.0
DYD3_k127_2252018_12 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0004482 48.0
DYD3_k127_2252018_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 335.0
DYD3_k127_2252018_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002091 283.0
DYD3_k127_2252018_4 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001208 269.0
DYD3_k127_2252018_5 PFAM basic membrane lipoprotein K07335 - - 0.0000000000000000000000000000000000000000000000000000000000000001678 237.0
DYD3_k127_2252018_6 TIGRFAM phosphodiesterase, MJ0936 - - - 0.000000000000000000000000000000000000000000000000001769 191.0
DYD3_k127_2252018_7 Uncharacterised protein family UPF0047 - GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000004005 184.0
DYD3_k127_2252018_8 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000001437 181.0
DYD3_k127_2252018_9 Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro K01101 - 3.1.3.41 0.000000000000000000000000000000000000000001011 170.0
DYD3_k127_225216_0 Belongs to the DegT DnrJ EryC1 family K12452,K13010 - 1.17.1.1,2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 394.0
DYD3_k127_225216_1 NeuB family K01654,K18430 - 2.5.1.101,2.5.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559 328.0
DYD3_k127_225216_2 NAD(P)H-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003103 317.0
DYD3_k127_225216_3 UDP-N-acetylglucosamine 2-epimerase K08068,K18429 - 3.2.1.183,3.2.1.184 0.000000000000000000000000000000000000000000000000000000000000000000000003664 260.0
DYD3_k127_2271158_0 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 3.055e-238 751.0
DYD3_k127_2271158_1 PFAM carbohydrate kinase K00854 - 2.7.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 612.0
DYD3_k127_2271158_2 Belongs to the xylose isomerase family K01805 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046365,GO:0071704,GO:1901575 5.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008728 587.0
DYD3_k127_2271158_3 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 542.0
DYD3_k127_2271158_4 Biotin carboxylase C-terminal domain K01941,K01961 - 6.3.4.14,6.3.4.6,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 447.0
DYD3_k127_2271158_5 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000005661 242.0
DYD3_k127_2271158_6 ATPases associated with a variety of cellular activities K10545 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000004192 198.0
DYD3_k127_2271158_7 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000004624 168.0
DYD3_k127_2271158_8 Biotin-requiring enzyme - - - 0.000000001091 66.0
DYD3_k127_2271158_9 - - - - 0.000007569 58.0
DYD3_k127_2298206_0 - - - - 0.0 1160.0
DYD3_k127_2298206_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 9.101e-295 929.0
DYD3_k127_2298206_2 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 454.0
DYD3_k127_2298206_3 Hexapeptide repeat of succinyl-transferase K00661 - 2.3.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 286.0
DYD3_k127_2298206_4 Belongs to the HesB IscA family K13628,K15724 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009061,GO:0009987,GO:0010467,GO:0015980,GO:0016020,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055114,GO:0071704,GO:0071840,GO:0071944,GO:1901564 - 0.0000000000000000000000000000000002676 138.0
DYD3_k127_2298206_5 TM2 domain protein - - - 0.0000000000000000000000000000000002889 140.0
DYD3_k127_2298206_6 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000006684 138.0
DYD3_k127_2298206_7 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08968 - 1.8.4.14 0.0000000000000000000000000000001079 126.0
DYD3_k127_2298206_8 Rieske [2Fe-2S] domain - - - 0.000000000000000000001045 107.0
DYD3_k127_2298206_9 Belongs to the GbsR family - - - 0.0000000000000003264 87.0
DYD3_k127_2398811_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 419.0
DYD3_k127_2398811_1 alcohol dehydrogenase K13953,K18382 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000002783 270.0
DYD3_k127_2398811_2 Putative cell wall binding repeat 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003436 254.0
DYD3_k127_2398811_3 L-asparaginase II - - - 0.00000000000000000000000000000000000000000000000000000000000000000002237 248.0
DYD3_k127_2398811_4 endonuclease III K03575 - - 0.000000000000000000000000000000000000000000000000000000001061 218.0
DYD3_k127_2398811_5 Protein of unknown function (DUF554) K07150 - - 0.000000000000000000000000000000000000000000000000727 201.0
DYD3_k127_2398811_6 phosphatase activity K07025 - - 0.00000000000000000000000000000000000000001185 164.0
DYD3_k127_2398811_7 Polymer-forming cytoskeletal - - - 0.0000000000001669 80.0
DYD3_k127_2398811_8 Thioredoxin peroxidase K03564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.11.1.15 0.000128 53.0
DYD3_k127_2422460_0 helicase superfamily c-terminal domain K06877 - - 1.079e-272 862.0
DYD3_k127_2422460_1 Sodium Bile acid symporter family K03325,K03741 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015104,GO:0015105,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0015699,GO:0015700,GO:0016020,GO:0022804,GO:0022857,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656 1.20.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 418.0
DYD3_k127_2422460_10 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000001484 154.0
DYD3_k127_2422460_11 Exonuclease K07502 - - 0.00000000000000000000000000000000005775 149.0
DYD3_k127_2422460_12 Methyltransferase type 12 - - - 0.0000000000000000000004575 106.0
DYD3_k127_2422460_13 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000009906 58.0
DYD3_k127_2422460_15 cell cycle K05589,K13052 - - 0.0001392 51.0
DYD3_k127_2422460_16 OsmC-like protein - - - 0.0002094 51.0
DYD3_k127_2422460_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 359.0
DYD3_k127_2422460_3 Zincin-like metallopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 307.0
DYD3_k127_2422460_4 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 300.0
DYD3_k127_2422460_5 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003578 279.0
DYD3_k127_2422460_6 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000002674 236.0
DYD3_k127_2422460_7 Provides the (R)-glutamate required for cell wall biosynthesis K01776,K02428 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 3.6.1.66,5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000001839 228.0
DYD3_k127_2422460_8 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000001561 218.0
DYD3_k127_2422460_9 NUBPL iron-transfer P-loop NTPase K02282 - - 0.00000000000000000000000000000000000000000001155 177.0
DYD3_k127_2422921_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 553.0
DYD3_k127_2422921_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001101 277.0
DYD3_k127_2422921_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000001716 238.0
DYD3_k127_2422921_3 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000008563 189.0
DYD3_k127_2422921_4 DNA helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000001119 191.0
DYD3_k127_2422921_5 TRANSCRIPTIONal - - - 0.0000000000000000000000000000000000000007437 171.0
DYD3_k127_2422921_6 Methyltransferase domain K07003 - - 0.000000000000000000000000000003768 133.0
DYD3_k127_2422921_7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000009232 113.0
DYD3_k127_2422921_8 Single-stranded-DNA-specific exonuclease recj K07462 - - 0.00000000000004272 76.0
DYD3_k127_2432975_0 Beta-eliminating lyase K01667 - 4.1.99.1 1.064e-217 683.0
DYD3_k127_2432975_1 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 503.0
DYD3_k127_2432975_10 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0030312,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.000000001956 70.0
DYD3_k127_2432975_11 Pyridoxamine 5'-phosphate oxidase - - - 0.0007678 48.0
DYD3_k127_2432975_2 Sterol carrier protein domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 353.0
DYD3_k127_2432975_3 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004073 257.0
DYD3_k127_2432975_4 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000005369 215.0
DYD3_k127_2432975_5 COG2041 Sulfite oxidase and related enzymes - - - 0.000000000000000000000000000000000000000000000000000003196 203.0
DYD3_k127_2432975_6 Uncharacterized protein conserved in bacteria (DUF2236) - - - 0.000000000000000000000000000000000000000001453 177.0
DYD3_k127_2432975_7 Repeat of unknown function (DUF346) - - - 0.000000000000000000000000000000000000000004305 161.0
DYD3_k127_2432975_8 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.000000000000000000000000000000009886 144.0
DYD3_k127_2432975_9 cytochrome oxidase assembly K02259 - - 0.000000000000000000000002156 117.0
DYD3_k127_2437430_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 3.977e-259 818.0
DYD3_k127_2437430_1 tRNA binding K04566 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 426.0
DYD3_k127_2437430_10 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.0000000000000000000000000001638 126.0
DYD3_k127_2437430_11 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000001718 117.0
DYD3_k127_2437430_13 WD40-like Beta Propeller Repeat - - - 0.0000001637 64.0
DYD3_k127_2437430_14 Hemolysin-type calcium-binding repeat (2 copies) - - - 0.00006063 57.0
DYD3_k127_2437430_15 - - - - 0.0003798 44.0
DYD3_k127_2437430_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008571 413.0
DYD3_k127_2437430_3 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 408.0
DYD3_k127_2437430_4 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005145 281.0
DYD3_k127_2437430_5 PFAM glycosyl transferase family 39 K00728 - 2.4.1.109 0.00000000000000000000000000000000000000000000000000000000000000000000001724 261.0
DYD3_k127_2437430_6 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000006389 226.0
DYD3_k127_2437430_7 thymidine kinase K00857 - 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000001392 213.0
DYD3_k127_2437430_8 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000005054 151.0
DYD3_k127_2437430_9 Predicted membrane protein (DUF2177) - - - 0.00000000000000000000000000000000001702 146.0
DYD3_k127_2439096_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 523.0
DYD3_k127_2439096_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835,K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007629 449.0
DYD3_k127_2439096_10 phosphinothricin N-acetyltransferase activity K03830 - - 0.000000000000000000000000000000000000000000000004216 186.0
DYD3_k127_2439096_11 galactose-6-phosphate isomerase activity K00761,K01808 - 2.4.2.9,5.3.1.6 0.0000000000000000000000000000000000000000000004661 174.0
DYD3_k127_2439096_12 - - - - 0.0000000000000000000000000000000000000131 147.0
DYD3_k127_2439096_13 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000008822 130.0
DYD3_k127_2439096_14 Protein of unknown function DUF126 K09128 - - 0.0000000000000000000000000001904 124.0
DYD3_k127_2439096_15 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000002258 110.0
DYD3_k127_2439096_16 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000009372 115.0
DYD3_k127_2439096_17 Binds the 23S rRNA K02909 - - 0.000000000000000000001141 99.0
DYD3_k127_2439096_18 Uncharacterized protein conserved in bacteria (DUF2344) - - - 0.0000000000003145 83.0
DYD3_k127_2439096_19 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00001036 48.0
DYD3_k127_2439096_2 Protein of unknown function (DUF521) K09123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 430.0
DYD3_k127_2439096_20 Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins K03571 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0008360,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944 - 0.00004021 52.0
DYD3_k127_2439096_3 PFAM penicillin-binding protein transpeptidase K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 332.0
DYD3_k127_2439096_4 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 306.0
DYD3_k127_2439096_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005934 271.0
DYD3_k127_2439096_6 Protein of unknown function (DUF1385) K09153 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004277 262.0
DYD3_k127_2439096_7 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008383 256.0
DYD3_k127_2439096_8 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000008535 221.0
DYD3_k127_2439096_9 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000000000000000000000000001068 192.0
DYD3_k127_249873_0 Dihydropyrimidinase K01464 - 3.5.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 590.0
DYD3_k127_249873_1 decarboxylase K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 493.0
DYD3_k127_249873_2 TrkA-N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 455.0
DYD3_k127_249873_3 Carbon-nitrogen hydrolase K01431 - 3.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 445.0
DYD3_k127_249873_4 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 351.0
DYD3_k127_249873_5 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007036 343.0
DYD3_k127_249873_6 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 290.0
DYD3_k127_249873_7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0009268,GO:0009405,GO:0009628,GO:0010447,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051704,GO:0071944 - 0.000000000000000000000000000000000000000000000000006749 196.0
DYD3_k127_249873_8 PAS domain - - - 0.000000000000000000000004284 115.0
DYD3_k127_249873_9 AAA domain - - - 0.0000000000000000000005874 104.0
DYD3_k127_2512665_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007299 324.0
DYD3_k127_2512665_1 Sigma-70 region 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004697 304.0
DYD3_k127_2512665_2 Calcineurin-like phosphoesterase - - - 0.0000000000000007949 91.0
DYD3_k127_2512665_3 Bacterio-opsin activator HTH domain protein - - - 0.00000000000000874 79.0
DYD3_k127_251771_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000001745 168.0
DYD3_k127_251771_1 PFAM response regulator receiver - - - 0.00000000000000000000001346 109.0
DYD3_k127_252815_0 D-ala D-ala ligase C-terminus K03802 - 6.3.2.29,6.3.2.30 0.0 1126.0
DYD3_k127_252815_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 437.0
DYD3_k127_252815_10 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000003194 110.0
DYD3_k127_252815_11 His Kinase A (phosphoacceptor) domain - - - 0.00000000000004928 85.0
DYD3_k127_252815_12 Peptidase M16 - - - 0.00000003861 56.0
DYD3_k127_252815_13 Cytochrome C biogenesis protein K05516 - - 0.000009599 57.0
DYD3_k127_252815_2 PFAM Transketolase central region K00167 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008755 423.0
DYD3_k127_252815_3 Mur ligase middle domain K03802 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 420.0
DYD3_k127_252815_4 Dehydrogenase E1 component K00166 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 370.0
DYD3_k127_252815_5 peptidase K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005526 354.0
DYD3_k127_252815_6 Peptidase family S51 K13282 - 3.4.15.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 327.0
DYD3_k127_252815_7 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 327.0
DYD3_k127_252815_8 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000004896 163.0
DYD3_k127_252815_9 e3 binding domain K00627,K09699 - 2.3.1.12,2.3.1.168 0.0000000000000000000000000000000000001531 147.0
DYD3_k127_2550290_0 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 417.0
DYD3_k127_2550290_1 ABC-type spermidine putrescine transport system, permease component I K11071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 334.0
DYD3_k127_2550290_2 Bacterial extracellular solute-binding protein K11069 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 337.0
DYD3_k127_2550290_3 Binding-protein-dependent transport system inner membrane component K11070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 301.0
DYD3_k127_2550290_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.000000000000000009947 88.0
DYD3_k127_2565111_0 E1-E2 ATPase K01533 - 3.6.3.4 5.115e-249 786.0
DYD3_k127_2565111_1 acetyltransferase K06975 - - 0.00000000000000000000000007406 111.0
DYD3_k127_2565111_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000002159 81.0
DYD3_k127_2565111_3 chaperone-mediated protein complex assembly K00373,K00405,K17052 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - 0.00000009015 61.0
DYD3_k127_2565111_4 Belongs to the GST superfamily K00799 - 2.5.1.18 0.0001259 48.0
DYD3_k127_25998_0 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 522.0
DYD3_k127_25998_1 CobW/HypB/UreG, nucleotide-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 481.0
DYD3_k127_25998_10 spore germination K03605 - - 0.00000006807 66.0
DYD3_k127_25998_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00596,K00823 - 2.6.1.19,4.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 475.0
DYD3_k127_25998_3 Nickel-dependent hydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 442.0
DYD3_k127_25998_4 NADH ubiquinone oxidoreductase, 20 Kd subunit K14128 - 1.8.98.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008934 299.0
DYD3_k127_25998_5 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002307 288.0
DYD3_k127_25998_6 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.000000000000000000000000000000000000000000004417 165.0
DYD3_k127_25998_7 Polysaccharide deacetylase - - - 0.0000000000000000000006154 98.0
DYD3_k127_25998_8 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000005566 87.0
DYD3_k127_25998_9 CobW/HypB/UreG, nucleotide-binding domain - - - 0.000000002122 60.0
DYD3_k127_2607674_0 amine oxidase K06954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 343.0
DYD3_k127_2607674_1 Protein of unknown function (DUF1365) K09701 - - 0.000000000000000000000000000000000000000000000003213 185.0
DYD3_k127_2607674_2 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000002974 154.0
DYD3_k127_2607674_3 PFAM regulatory protein LuxR - - - 0.0000000000000000000000000002108 130.0
DYD3_k127_2607674_4 PFAM 4Fe-4S K05337 - - 0.000469 52.0
DYD3_k127_2629070_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 2.795e-231 738.0
DYD3_k127_2629070_1 Acyl-CoA dehydrogenase, C-terminal domain K16173 - 1.3.99.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 537.0
DYD3_k127_2629070_10 3-methyladenine DNA glycosylase - - - 0.000000000000000000000000000000008413 146.0
DYD3_k127_2629070_11 EamA-like transporter family - - - 0.0000000000000000000000000003336 124.0
DYD3_k127_2629070_12 Ferredoxin - - - 0.000000000000000000000004445 106.0
DYD3_k127_2629070_13 AraC-like ligand binding domain - - - 0.00000000000000000006549 102.0
DYD3_k127_2629070_14 cysteine-tRNA ligase activity - - - 0.000000000000007756 86.0
DYD3_k127_2629070_15 Helix-turn-helix domain - - - 0.000000002913 62.0
DYD3_k127_2629070_16 Protein of unknown function (DUF3352) - - - 0.0000001976 64.0
DYD3_k127_2629070_17 - - - - 0.000009855 57.0
DYD3_k127_2629070_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000487 467.0
DYD3_k127_2629070_3 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 432.0
DYD3_k127_2629070_4 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007225 361.0
DYD3_k127_2629070_5 PFAM binding-protein-dependent transport systems inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 306.0
DYD3_k127_2629070_6 Acyl-carrier-protein s-malonyltransferase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000002177 250.0
DYD3_k127_2629070_7 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000001209 224.0
DYD3_k127_2629070_8 Iron permease FTR1 family K07243 - - 0.00000000000000000000000000000000000000000000000000000000000009648 224.0
DYD3_k127_2629070_9 Rhomboid family K19225 - 3.4.21.105 0.00000000000000000000000000000000002642 150.0
DYD3_k127_2642287_0 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000000000000003546 202.0
DYD3_k127_2642287_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000003928 199.0
DYD3_k127_2642287_2 Bacterial protein of unknown function (DUF853) K06915 - - 0.0000000000000000000000000000000000001137 145.0
DYD3_k127_2642287_3 Uncharacterized protein conserved in bacteria (DUF2334) K06986 - - 0.00000000000000000000000004301 114.0
DYD3_k127_2642287_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000002178 87.0
DYD3_k127_2642287_5 Major facilitator Superfamily - - - 0.00000000000009673 83.0
DYD3_k127_2642287_6 Carboxylesterase family - - - 0.000002589 59.0
DYD3_k127_2671720_0 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 367.0
DYD3_k127_2671720_1 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 313.0
DYD3_k127_2671720_2 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004162 259.0
DYD3_k127_2671720_3 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006568 257.0
DYD3_k127_2671720_4 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000002861 196.0
DYD3_k127_2671720_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000000000000000000001116 165.0
DYD3_k127_2671720_6 May be required for sporulation K09762 - - 0.000000000000000000000000000000000008094 149.0
DYD3_k127_2671720_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000002646 73.0
DYD3_k127_2681996_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K09181 - - 0.0 1155.0
DYD3_k127_2681996_1 malic protein domain protein K00027 - 1.1.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009826 587.0
DYD3_k127_2681996_2 anion transporter K14445 - - 0.0000000000000000000000000000000000000098 156.0
DYD3_k127_2681996_3 Domain of unknown function (DUF1730) K18979 - 1.17.99.6 0.0000002455 57.0
DYD3_k127_2718362_0 Evidence 5 No homology to any previously reported sequences - - - 6.857e-274 862.0
DYD3_k127_2718362_1 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 504.0
DYD3_k127_2718362_2 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009145 414.0
DYD3_k127_2718362_4 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000002966 196.0
DYD3_k127_2718362_5 [2Fe-2S] binding domain - - - 0.00000000000000000000000000000000000000000000000001289 190.0
DYD3_k127_2718362_6 Transcriptional regulator K22293 - - 0.000000000000000000000000000000000000000000001053 172.0
DYD3_k127_2718362_7 KR domain - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00006021 50.0
DYD3_k127_2766648_0 Sodium/calcium exchanger protein K07300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 296.0
DYD3_k127_2766648_1 Helix-turn-helix type 11 domain protein K13572 - - 0.00000000000000000000000000000000000000000000000000000000000000005501 235.0
DYD3_k127_2766648_2 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000006547 225.0
DYD3_k127_2766648_3 PFAM OsmC family protein K07397 - - 0.000000000000000000000000007955 115.0
DYD3_k127_2766648_4 DNA ligase D, 3'-phosphoesterase domain K01971 - 6.5.1.1 0.000000000000000002414 93.0
DYD3_k127_2766648_5 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000008804 64.0
DYD3_k127_2766648_6 transcriptional regulator - - - 0.000000001651 66.0
DYD3_k127_2766648_7 Adenylate cyclase - - - 0.000000108 62.0
DYD3_k127_2766648_8 O-Antigen ligase - - - 0.000005831 60.0
DYD3_k127_2766648_9 Tetratricopeptide repeat - - - 0.00005309 57.0
DYD3_k127_2777804_0 PFAM Adenosine AMP deaminase K01488,K18286 - 3.5.4.4,3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 418.0
DYD3_k127_2777804_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 416.0
DYD3_k127_2777804_2 Permease family K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 404.0
DYD3_k127_2777804_3 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 335.0
DYD3_k127_2777804_4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.000000000000000000004425 102.0
DYD3_k127_2782353_0 Belongs to the peptidase M50B family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003459 312.0
DYD3_k127_2782353_1 Amidohydrolase family K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003427 289.0
DYD3_k127_2782353_2 Acetyltransferase (GNAT) domain K00663 - 2.3.1.82 0.0000000000000000000000000000000000000000000000000000000003235 208.0
DYD3_k127_2782353_3 molybdopterin K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000001426 209.0
DYD3_k127_2782353_5 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000003192 87.0
DYD3_k127_2782353_6 TIGRFAM integral membrane protein TIGR01906 - - - 0.00000000003495 74.0
DYD3_k127_2787491_0 DEAD DEAH box helicase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008894 517.0
DYD3_k127_2787491_1 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 314.0
DYD3_k127_2787491_2 PFAM Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 304.0
DYD3_k127_2787491_3 Putative neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 301.0
DYD3_k127_2787491_4 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001698 289.0
DYD3_k127_2787491_5 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000000000000000000000000000008266 234.0
DYD3_k127_28067_0 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 615.0
DYD3_k127_28067_1 Arsenical pump membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 400.0
DYD3_k127_28067_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 376.0
DYD3_k127_28067_3 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000719 314.0
DYD3_k127_28067_4 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 303.0
DYD3_k127_28067_5 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000001009 241.0
DYD3_k127_28067_6 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000000000000000287 177.0
DYD3_k127_28067_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000003238 82.0
DYD3_k127_2806874_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004715 406.0
DYD3_k127_2806874_1 PFAM ComEC Rec2-related protein K02238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002434 297.0
DYD3_k127_2806874_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000003307 201.0
DYD3_k127_2806874_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.00000000000000000000000000000000000000000001457 182.0
DYD3_k127_2806874_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000005948 130.0
DYD3_k127_2806874_5 PFAM Peptidase family M23 - - - 0.000000000000000000000000001195 124.0
DYD3_k127_2806874_6 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000004243 98.0
DYD3_k127_2806874_7 TIGRFAM DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.00000000000113 79.0
DYD3_k127_2806874_8 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.000000001651 66.0
DYD3_k127_2812841_0 aminotransferase class I and II K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 442.0
DYD3_k127_2812841_1 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008822 312.0
DYD3_k127_2812841_2 sodium:proton antiporter activity K03316 - - 0.0000000000000000000000000000000000000000000000002219 179.0
DYD3_k127_2812841_3 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.00000000000000004678 91.0
DYD3_k127_2819307_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 9.077e-237 761.0
DYD3_k127_2819307_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 623.0
DYD3_k127_2819307_10 Protein of unknown function (DUF448) K07742 - - 0.000000000000000006789 87.0
DYD3_k127_2819307_11 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000009796 59.0
DYD3_k127_2819307_2 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 592.0
DYD3_k127_2819307_3 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003135 256.0
DYD3_k127_2819307_4 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000003209 230.0
DYD3_k127_2819307_5 TIGRFAM riboflavin biosynthesis protein RibF K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000009754 221.0
DYD3_k127_2819307_6 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000004971 217.0
DYD3_k127_2819307_7 DHHA1 domain K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000002117 199.0
DYD3_k127_2819307_8 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071944,GO:1990904 - 0.00000000000000000000000000000005799 131.0
DYD3_k127_2819307_9 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000005618 108.0
DYD3_k127_2912909_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.505e-253 801.0
DYD3_k127_2912909_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004186 349.0
DYD3_k127_2912909_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 323.0
DYD3_k127_2912909_3 integral membrane protein K00728 - 2.4.1.109 0.0000000000000000002545 101.0
DYD3_k127_2922456_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 478.0
DYD3_k127_2922456_1 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 393.0
DYD3_k127_2922456_10 4Fe-4S binding domain - - - 0.0000000000000000000000000007003 117.0
DYD3_k127_2922456_11 Aminoacyl-tRNA editing domain K19055 - - 0.0000008195 57.0
DYD3_k127_2922456_2 Threonyl alanyl tRNA synthetase SAD K07050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009797 279.0
DYD3_k127_2922456_3 F420-0:Gamma-glutamyl ligase K12234 - 6.3.2.31,6.3.2.34 0.000000000000000000000000000000000000000000000000000000000000000000000009313 266.0
DYD3_k127_2922456_4 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000005138 249.0
DYD3_k127_2922456_5 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000001807 242.0
DYD3_k127_2922456_6 Uncharacterised protein family UPF0052 K11212 - 2.7.8.28 0.0000000000000000000000000000000000000000000000000000003212 199.0
DYD3_k127_2922456_7 homoserine dehydrogenase K00003,K12524 GO:0003674,GO:0003824,GO:0004412,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.3,2.7.2.4 0.000000000000000000000000000000000000000000001269 183.0
DYD3_k127_2922456_8 Aminoacyl-tRNA editing domain - - - 0.000000000000000000000000000000000000005279 153.0
DYD3_k127_2922456_9 Guanylyltransferase that catalyzes the activation of 2- phospho-L-lactate (LP) as (2S)-lactyl-2-diphospho-5'-guanosine (LPPG), via the condensation of LP with GTP. Is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor K14941 - 2.7.7.68 0.0000000000000000000000000000008491 128.0
DYD3_k127_2929013_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 508.0
DYD3_k127_2929013_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 411.0
DYD3_k127_2929013_2 Exporter of polyketide antibiotics K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 416.0
DYD3_k127_2929013_3 Acyl-CoA dehydrogenase, N-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 399.0
DYD3_k127_2929013_4 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 319.0
DYD3_k127_2929013_5 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000005217 194.0
DYD3_k127_3012214_0 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 402.0
DYD3_k127_3012214_1 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000004315 189.0
DYD3_k127_3012214_2 phosphatase - - - 0.0000000000000000000000000732 114.0
DYD3_k127_3012214_3 - - - - 0.0000000001503 72.0
DYD3_k127_3012214_4 diguanylate cyclase - - - 0.00007909 55.0
DYD3_k127_303154_0 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 344.0
DYD3_k127_303154_1 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001022 278.0
DYD3_k127_303154_2 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004306 269.0
DYD3_k127_303154_3 Protein of unknown function (DUF429) - - - 0.000000000000000000000000000000000000000000000007011 179.0
DYD3_k127_303154_4 MerR, DNA binding - - - 0.000000000000000000000000000003966 124.0
DYD3_k127_303154_5 cell redox homeostasis - - - 0.000000000000000000005966 101.0
DYD3_k127_306440_0 ABC transporter K06022,K06158,K10834 - 3.6.3.29,3.6.3.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 575.0
DYD3_k127_306440_1 Putative cell wall binding repeat 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005442 283.0
DYD3_k127_306440_2 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000003917 234.0
DYD3_k127_306440_3 ACT domain K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000002271 186.0
DYD3_k127_306440_4 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.0000000000000000000000000000000000000000000002889 184.0
DYD3_k127_306440_5 Lysyl oxidase - - - 0.00000000000000000000000000000000001769 156.0
DYD3_k127_306440_6 EamA-like transporter family - - - 0.0000000009613 72.0
DYD3_k127_3136534_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008387 299.0
DYD3_k127_3136534_1 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003475 259.0
DYD3_k127_3136534_2 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.000000000000000001069 98.0
DYD3_k127_3136534_3 - - - - 0.00002191 47.0
DYD3_k127_3142701_0 Fructose-bisphosphate aldolase class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 488.0
DYD3_k127_3142701_1 Rieske 2Fe-2S - - - 0.0000000000000000000000000003517 123.0
DYD3_k127_3142701_2 Cytochrome c K17222 - - 0.00000000000001761 83.0
DYD3_k127_3155416_0 the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms K00958 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 511.0
DYD3_k127_3155416_1 Sodium:sulfate symporter transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 511.0
DYD3_k127_3155416_10 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000003093 202.0
DYD3_k127_3155416_11 transferase activity, transferring glycosyl groups K16703 - - 0.00000000000000000000000000000000000000000000001912 191.0
DYD3_k127_3155416_12 Bacterial Ig-like domain (group 3) - - - 0.000000000000000000000000000000000000000001093 181.0
DYD3_k127_3155416_13 Hydrolase - - - 0.0000000000000000000000000000000000004052 162.0
DYD3_k127_3155416_14 alpha beta - - - 0.00000000000000000000000000002089 124.0
DYD3_k127_3155416_15 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000001379 60.0
DYD3_k127_3155416_16 - - - - 0.0004005 46.0
DYD3_k127_3155416_17 PFAM Sulfotransferase domain - - - 0.0005311 42.0
DYD3_k127_3155416_2 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 451.0
DYD3_k127_3155416_3 FAD binding domain K05712 - 1.14.13.127 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 432.0
DYD3_k127_3155416_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 394.0
DYD3_k127_3155416_5 Putative cell wall binding repeat 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 324.0
DYD3_k127_3155416_6 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007468 310.0
DYD3_k127_3155416_7 carbohydrate metabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006513 254.0
DYD3_k127_3155416_8 Catalyzes the synthesis of activated sulfate K00860 - 2.7.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000004108 246.0
DYD3_k127_3155416_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000004265 238.0
DYD3_k127_3192429_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 0.0 1187.0
DYD3_k127_3192429_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009579 461.0
DYD3_k127_3192429_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000003195 254.0
DYD3_k127_3192429_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000001118 224.0
DYD3_k127_3192429_4 Putative neutral zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000003829 196.0
DYD3_k127_3192429_5 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000547 167.0
DYD3_k127_3192429_6 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008463,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.00000000000000000000000000000000000000005668 162.0
DYD3_k127_3192429_7 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000002264 147.0
DYD3_k127_3192429_8 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.4.23.36 0.00000000000000000000003174 107.0
DYD3_k127_3192429_9 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000001092 58.0
DYD3_k127_3207761_0 PFAM homogentisate 12-dioxygenase K00451 - 1.13.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 316.0
DYD3_k127_3207761_1 Enoyl- acyl-carrier-protein reductase NADH K00208,K11611 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0005488,GO:0005504,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030312,GO:0030497,GO:0031406,GO:0032787,GO:0033293,GO:0034645,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006747 299.0
DYD3_k127_3207761_10 TIGRFAM phosphohistidine phosphatase SixA K08296 - - 0.0000000000000000000000000131 120.0
DYD3_k127_3207761_11 PFAM Methyltransferase K15256 - - 0.00000000000000000000001661 108.0
DYD3_k127_3207761_12 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000001204 75.0
DYD3_k127_3207761_13 PFAM Major Facilitator Superfamily - - - 0.000000000007147 77.0
DYD3_k127_3207761_2 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 292.0
DYD3_k127_3207761_3 PFAM histone deacetylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 297.0
DYD3_k127_3207761_4 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000000000921 212.0
DYD3_k127_3207761_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000003812 201.0
DYD3_k127_3207761_6 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.000000000000000000000000000000000000000000000000001756 192.0
DYD3_k127_3207761_7 helix_turn_helix, cAMP Regulatory protein K01420,K10914,K21561,K21564 - - 0.000000000000000000000000000000000000000002456 169.0
DYD3_k127_3207761_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07104 - 1.13.11.2 0.0000000000000000000000000000000000000006624 152.0
DYD3_k127_3207761_9 Transcriptional regulator - - - 0.00000000000000000000000000000007637 131.0
DYD3_k127_325228_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 426.0
DYD3_k127_325228_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003881 404.0
DYD3_k127_325228_10 Belongs to the Fur family K03711,K09825 - - 0.00000000000000000002232 105.0
DYD3_k127_325228_11 - - - - 0.00000000000009095 77.0
DYD3_k127_325228_13 F420H(2)-dependent quinone reductase - GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0030312,GO:0031406,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0044464,GO:0048037,GO:0050662,GO:0055114,GO:0070967,GO:0071944,GO:0097159,GO:0097367,GO:1901363 - 0.00005937 54.0
DYD3_k127_325228_14 Transglycosylase associated protein - - - 0.00009981 49.0
DYD3_k127_325228_2 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001538 278.0
DYD3_k127_325228_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003174 273.0
DYD3_k127_325228_4 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009379 243.0
DYD3_k127_325228_5 High-affinity nickel-transport protein K07241 - - 0.00000000000000000000000000000000000000000000000000000000000000005201 231.0
DYD3_k127_325228_6 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000005899 215.0
DYD3_k127_325228_7 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000468 215.0
DYD3_k127_325228_8 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000001874 127.0
DYD3_k127_3283665_0 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003448 395.0
DYD3_k127_3283665_1 Carboxylate--amine ligase - - - 0.00000000000000000000000000000000000000000007433 171.0
DYD3_k127_3283665_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000005464 123.0
DYD3_k127_3283665_3 Fasciclin - GO:0005575,GO:0005576,GO:0005615,GO:0005623,GO:0005886,GO:0008150,GO:0009605,GO:0009607,GO:0016020,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043207,GO:0044403,GO:0044419,GO:0044421,GO:0044464,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0071944,GO:0075136 - 0.0000000000000062 84.0
DYD3_k127_3283665_4 Transglycosylase associated protein - - - 0.0000000000000795 81.0
DYD3_k127_3283665_5 Alpha/beta hydrolase family - - - 0.0000000001049 72.0
DYD3_k127_3283665_6 DNA binding - - - 0.00000000165 66.0
DYD3_k127_3283665_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000001008 62.0
DYD3_k127_3283665_8 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.00000001171 61.0
DYD3_k127_3283665_9 Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX K17759 - 5.1.99.6 0.000003296 50.0
DYD3_k127_3349813_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009713 536.0
DYD3_k127_3349813_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005412 436.0
DYD3_k127_3349813_2 oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004795 308.0
DYD3_k127_3349813_3 TIGRFAM hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000005166 204.0
DYD3_k127_3349813_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000001086 141.0
DYD3_k127_3349813_5 Oxidoreductase NAD-binding domain K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000002013 151.0
DYD3_k127_3375384_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 576.0
DYD3_k127_3375384_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005052 408.0
DYD3_k127_3375384_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 346.0
DYD3_k127_3375384_3 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 342.0
DYD3_k127_3375384_4 PFAM Rieske 2Fe-2S domain protein K00479,K00499,K05708 - 1.14.12.19,1.14.15.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002418 267.0
DYD3_k127_3375384_5 Adenylate cyclase, family 3 (some proteins contain HAMP domain) K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000001143 218.0
DYD3_k127_3375384_6 PFAM sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000000000000000000000001999 169.0
DYD3_k127_3375384_7 Hydrolase, carbon-nitrogen family K12251 - 3.5.1.53 0.00000000000000000000001153 115.0
DYD3_k127_3375384_8 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000107 75.0
DYD3_k127_3389961_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 502.0
DYD3_k127_3389961_1 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009578 399.0
DYD3_k127_3389961_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 325.0
DYD3_k127_3389961_3 ABC transporter, ATP-binding protein K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001222 288.0
DYD3_k127_3389961_4 Amidohydrolase family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000006312 272.0
DYD3_k127_3389961_5 ABC-type Na efflux pump, permease component K01992 - - 0.000000000000000000000000000000000000000000001041 182.0
DYD3_k127_3389961_6 phosphatase homologous to the C-terminal domain of histone macroH2A1 - - - 0.0000000000000000000000000000000000000000000267 173.0
DYD3_k127_3389961_7 NAD(P) transhydrogenase, alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000354 117.0
DYD3_k127_3389961_8 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000151 82.0
DYD3_k127_3389961_9 Domain of unknown function (DUF4395) - - - 0.00001378 50.0
DYD3_k127_3392773_0 R3H domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 603.0
DYD3_k127_3392773_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008053 350.0
DYD3_k127_3392773_10 GTP binding - - - 0.0000000000000001099 92.0
DYD3_k127_3392773_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0030964,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000001969 86.0
DYD3_k127_3392773_12 - - - - 0.0008695 50.0
DYD3_k127_3392773_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335,K18331 - 1.12.1.3,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 336.0
DYD3_k127_3392773_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007553 292.0
DYD3_k127_3392773_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000001976 198.0
DYD3_k127_3392773_5 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000005184 191.0
DYD3_k127_3392773_6 Cyclic-di-AMP receptor - - - 0.00000000000000000000000000000000001002 139.0
DYD3_k127_3392773_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000001949 111.0
DYD3_k127_3392773_8 2 iron, 2 sulfur cluster binding K00334,K18330 - 1.12.1.3,1.6.5.3 0.0000000000000000000007113 106.0
DYD3_k127_3392773_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000009449 98.0
DYD3_k127_3418769_0 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488 GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006152,GO:0006154,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046100,GO:0046101,GO:0046102,GO:0046103,GO:0046112,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659 3.5.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006904 514.0
DYD3_k127_3418769_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 303.0
DYD3_k127_3418769_10 PFAM 4Fe-4S K00176 - 1.2.7.3 0.00000000005155 66.0
DYD3_k127_3418769_2 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 296.0
DYD3_k127_3418769_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007577 256.0
DYD3_k127_3418769_4 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001078 247.0
DYD3_k127_3418769_5 PFAM response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000015 231.0
DYD3_k127_3418769_6 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000001877 108.0
DYD3_k127_3418769_7 Pyruvate ferredoxin/flavodoxin oxidoreductase - - - 0.0000000000000000003019 97.0
DYD3_k127_3418769_8 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.000000000000000006675 91.0
DYD3_k127_3418769_9 SnoaL-like domain - - - 0.0000000000000002606 86.0
DYD3_k127_3435064_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.988e-292 919.0
DYD3_k127_3435064_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 2.829e-242 768.0
DYD3_k127_3435064_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 411.0
DYD3_k127_3435064_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 329.0
DYD3_k127_3435064_4 Thioesterase superfamily - - - 0.0000000000000000000002056 104.0
DYD3_k127_3435064_5 Aminoglycoside 2'-N-acetyltransferase K17840 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008080,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016020,GO:0016137,GO:0016139,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016999,GO:0017001,GO:0017144,GO:0030647,GO:0030649,GO:0034069,GO:0044237,GO:0044248,GO:0044464,GO:0047921,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901575,GO:1901657,GO:1901658 2.3.1.59 0.0000000000000000000005404 107.0
DYD3_k127_3435064_6 Non-essential cell division protein that could be required for efficient cell constriction - - - 0.0000000008704 70.0
DYD3_k127_3435064_7 - - - - 0.0003415 46.0
DYD3_k127_3435064_8 Belongs to the ParB family K03497 - - 0.0004035 45.0
DYD3_k127_349810_0 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000005979 227.0
DYD3_k127_349810_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000000004854 173.0
DYD3_k127_349810_2 Alpha beta hydrolase - - - 0.0000000000000000000000000001662 125.0
DYD3_k127_355753_0 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 440.0
DYD3_k127_355753_1 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 332.0
DYD3_k127_355753_10 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.000000004935 59.0
DYD3_k127_355753_11 competence protein - - - 0.0006288 52.0
DYD3_k127_355753_2 Aminotransferase class-V K00436 - 1.12.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006085 312.0
DYD3_k127_355753_3 Penicillin binding protein transpeptidase domain K05364 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000001934 240.0
DYD3_k127_355753_4 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000006203 223.0
DYD3_k127_355753_5 PFAM transglutaminase domain protein - - - 0.0000000000000000000000000000000000000000000000000000005047 219.0
DYD3_k127_355753_6 PFAM Forkhead-associated protein - - - 0.000000000000000000000000000000000000001395 159.0
DYD3_k127_355753_7 PFAM Phosphoglycerate mutase K02226,K22305 - 3.1.3.3,3.1.3.73 0.0000000000000000000000008877 115.0
DYD3_k127_355753_8 PFAM Forkhead-associated protein - - - 0.000000000000000001274 95.0
DYD3_k127_355753_9 Regulatory protein, FmdB family - - - 0.000000000000000002009 88.0
DYD3_k127_3667967_0 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004275 548.0
DYD3_k127_3667967_1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 364.0
DYD3_k127_3667967_2 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000003523 272.0
DYD3_k127_3772133_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 9.312e-319 991.0
DYD3_k127_3772133_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 7.579e-209 655.0
DYD3_k127_3772133_10 Metallopeptidase family M24 K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001453 284.0
DYD3_k127_3772133_11 Ribosomal protein S3, C-terminal domain K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003222 276.0
DYD3_k127_3772133_12 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004324 269.0
DYD3_k127_3772133_13 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001629 252.0
DYD3_k127_3772133_14 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000005587 258.0
DYD3_k127_3772133_15 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000000002735 233.0
DYD3_k127_3772133_16 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000002268 224.0
DYD3_k127_3772133_17 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000007511 234.0
DYD3_k127_3772133_18 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000009537 211.0
DYD3_k127_3772133_19 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000000000000000000000003158 211.0
DYD3_k127_3772133_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.53e-202 647.0
DYD3_k127_3772133_20 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000007343 214.0
DYD3_k127_3772133_21 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000009369 214.0
DYD3_k127_3772133_22 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 GO:0003674,GO:0003824,GO:0004016,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0009975,GO:0016020,GO:0016021,GO:0016829,GO:0016849,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000002312 218.0
DYD3_k127_3772133_23 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000004504 213.0
DYD3_k127_3772133_24 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000009474 203.0
DYD3_k127_3772133_25 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000002842 211.0
DYD3_k127_3772133_26 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000005608 198.0
DYD3_k127_3772133_27 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000007672 185.0
DYD3_k127_3772133_28 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000002999 186.0
DYD3_k127_3772133_29 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000007719 179.0
DYD3_k127_3772133_3 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000553 430.0
DYD3_k127_3772133_30 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.00000000000000000000000000000000000000000000000008129 183.0
DYD3_k127_3772133_31 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000008371 170.0
DYD3_k127_3772133_32 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000002313 166.0
DYD3_k127_3772133_33 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000002608 174.0
DYD3_k127_3772133_34 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000002928 162.0
DYD3_k127_3772133_35 Ribosomal protein S9/S16 K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000002012 157.0
DYD3_k127_3772133_36 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000000000000000000000000001604 156.0
DYD3_k127_3772133_37 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000134 152.0
DYD3_k127_3772133_38 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000008494 148.0
DYD3_k127_3772133_39 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000914 136.0
DYD3_k127_3772133_4 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 411.0
DYD3_k127_3772133_40 MutL protein - - - 0.0000000000000000000000000000000009974 151.0
DYD3_k127_3772133_41 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001199 132.0
DYD3_k127_3772133_42 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000005055 122.0
DYD3_k127_3772133_43 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000008366 124.0
DYD3_k127_3772133_44 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0040007,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000001433 133.0
DYD3_k127_3772133_45 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000003823 120.0
DYD3_k127_3772133_46 PFAM Uncharacterised P-loop hydrolase UPF0079 K06925 - - 0.0000000000000000000000000002416 123.0
DYD3_k127_3772133_47 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000032 115.0
DYD3_k127_3772133_48 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000006321 113.0
DYD3_k127_3772133_49 YbbR-like protein - - - 0.000000000000000000002659 108.0
DYD3_k127_3772133_5 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 385.0
DYD3_k127_3772133_50 Glycoprotease family - - - 0.000000000000000000003854 102.0
DYD3_k127_3772133_51 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.00000000000000000008195 91.0
DYD3_k127_3772133_52 - - - - 0.0000000000000000001114 101.0
DYD3_k127_3772133_53 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000002404 93.0
DYD3_k127_3772133_54 Macro domain - - - 0.0000000000000004283 85.0
DYD3_k127_3772133_55 - - - - 0.0000000000001026 79.0
DYD3_k127_3772133_56 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000001937 64.0
DYD3_k127_3772133_57 TIGRFAM ribosomal protein L30 K02907 - - 0.0000000002549 66.0
DYD3_k127_3772133_58 structural constituent of ribosome K02904 - - 0.000000006051 59.0
DYD3_k127_3772133_59 pseudouridine synthase activity K06178,K06181,K06183 - 5.4.99.19,5.4.99.20,5.4.99.22 0.000000007683 66.0
DYD3_k127_3772133_6 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 394.0
DYD3_k127_3772133_60 - - - - 0.000006434 55.0
DYD3_k127_3772133_7 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 359.0
DYD3_k127_3772133_8 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008647 340.0
DYD3_k127_3772133_9 CBS domain K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 297.0
DYD3_k127_3781429_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 8.175e-266 833.0
DYD3_k127_3781429_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006597 582.0
DYD3_k127_3781429_10 Binds directly to 16S ribosomal RNA K02968 - - 0.000000002455 69.0
DYD3_k127_3781429_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 472.0
DYD3_k127_3781429_3 Belongs to the phosphoglycerate kinase family K00927 GO:0001871,GO:0002020,GO:0003674,GO:0003824,GO:0004618,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009893,GO:0009986,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019222,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030162,GO:0030193,GO:0030195,GO:0030246,GO:0030247,GO:0030312,GO:0031323,GO:0031325,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043532,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045862,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050818,GO:0050819,GO:0050878,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051917,GO:0051919,GO:0055086,GO:0060255,GO:0061041,GO:0061045,GO:0065007,GO:0065008,GO:0070613,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0080134,GO:0090407,GO:1900046,GO:1900047,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903034,GO:1903035,GO:1903317,GO:1903319,GO:2001065 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008269 460.0
DYD3_k127_3781429_4 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002429 284.0
DYD3_k127_3781429_5 Phosphorylase superfamily K00757 GO:0003674,GO:0003824,GO:0004850,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006218,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009116,GO:0009119,GO:0009164,GO:0009987,GO:0016043,GO:0016740,GO:0016757,GO:0016763,GO:0019439,GO:0022607,GO:0030955,GO:0031420,GO:0033554,GO:0034214,GO:0034641,GO:0034655,GO:0034656,GO:0042454,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046108,GO:0046131,GO:0046133,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0050896,GO:0051259,GO:0051716,GO:0055086,GO:0065003,GO:0071704,GO:0071840,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658 2.4.2.3 0.000000000000000000000000000000000000000000000000000000000000009104 235.0
DYD3_k127_3781429_6 PFAM ROK family protein K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000005445 216.0
DYD3_k127_3781429_7 VanW like protein - - - 0.000000000000000000000000000000001055 150.0
DYD3_k127_3781429_8 - - - - 0.00000000000000001663 83.0
DYD3_k127_3781429_9 Endonuclease Exonuclease Phosphatase - - - 0.0000000000641 76.0
DYD3_k127_3815170_0 PFAM Acetyl-CoA hydrolase transferase K01067 - 3.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 504.0
DYD3_k127_3815170_1 - - - - 0.000000000000000000000000000528 122.0
DYD3_k127_3815170_2 - - - - 0.00000000000000000001426 98.0
DYD3_k127_3815170_3 Universal stress protein family - - - 0.0000000000000001412 93.0
DYD3_k127_3815170_4 Belongs to the class VI-like SAM-binding methyltransferase superfamily. Isoprenylcysteine carboxyl methyltransferase family - - - 0.00000000003351 75.0
DYD3_k127_3829136_0 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 385.0
DYD3_k127_3829136_1 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 364.0
DYD3_k127_3829136_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000008757 228.0
DYD3_k127_3829136_3 guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000004484 191.0
DYD3_k127_3829136_4 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000007987 175.0
DYD3_k127_3829136_5 - - - - 0.0000000000000000000000000001198 118.0
DYD3_k127_3829136_6 SnoaL-like domain K06893 - - 0.0000000000002097 75.0
DYD3_k127_3935882_0 von Willebrand factor (vWF) type A domain - - - 4.242e-204 655.0
DYD3_k127_3935882_1 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 600.0
DYD3_k127_3935882_2 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 438.0
DYD3_k127_3935882_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 418.0
DYD3_k127_3935882_4 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008708 384.0
DYD3_k127_3935882_5 type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis - - - 0.00000000000000000000000000000000007645 148.0
DYD3_k127_3935882_6 PFAM flavin reductase domain protein, FMN-binding - - - 0.00000000000000000000000000006261 129.0
DYD3_k127_3935882_7 epimerase dehydratase K07071 - - 0.0000000000003217 77.0
DYD3_k127_3939669_0 Malate synthase K01638 - 2.3.3.9 7.634e-217 689.0
DYD3_k127_3939669_1 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 3.524e-203 657.0
DYD3_k127_3939669_10 xanthine dehydrogenase activity K13479 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000002633 209.0
DYD3_k127_3939669_11 [2Fe-2S] binding domain K03518,K13483 - 1.2.5.3 0.000000000000000000000000000000000000000000000000002772 187.0
DYD3_k127_3939669_12 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000008505 181.0
DYD3_k127_3939669_13 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000919 153.0
DYD3_k127_3939669_14 Protein of unknown function (DUF3830) - - - 0.0000000000000000000000000000000000003002 153.0
DYD3_k127_3939669_15 CoA binding domain K06929 - - 0.000000000000000000000000000000000004629 145.0
DYD3_k127_3939669_16 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009378,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360 3.6.4.12 0.00000000000000000000000000000000089 142.0
DYD3_k127_3939669_17 Peptidase family M1 domain - - - 0.00000000000000000000000000000857 136.0
DYD3_k127_3939669_18 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000005623 126.0
DYD3_k127_3939669_19 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.0000000000000000000000198 108.0
DYD3_k127_3939669_2 elongation factor G K02355 - - 1.549e-196 634.0
DYD3_k127_3939669_20 Acetyltransferase (GNAT) family - - - 0.00000000000000000000003161 114.0
DYD3_k127_3939669_21 OHCU decarboxylase - - - 0.0000000000000000001814 102.0
DYD3_k127_3939669_22 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.000000000004788 72.0
DYD3_k127_3939669_3 tRNA synthetases class I (W and Y) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 562.0
DYD3_k127_3939669_4 Small MutS-related domain K07456 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 408.0
DYD3_k127_3939669_5 PFAM glycosyl transferase, family 51 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 355.0
DYD3_k127_3939669_6 Catalyzes the oxidation of uric acid to 5- hydroxyisourate, which is further processed to form (S)-allantoin K00365 - 1.7.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008813 331.0
DYD3_k127_3939669_7 Amidohydrolase family K01464,K01466 - 3.5.2.2,3.5.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 321.0
DYD3_k127_3939669_8 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001113 252.0
DYD3_k127_3939669_9 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - 0.00000000000000000000000000000000000000000000000000000000000000000004036 250.0
DYD3_k127_3967116_0 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000166 279.0
DYD3_k127_3967116_1 Sodium/hydrogen exchanger family K03316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002793 264.0
DYD3_k127_3967116_2 UbiA prenyltransferase family - - - 0.0000000000000000000000002078 116.0
DYD3_k127_3967116_3 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000007305 55.0
DYD3_k127_3967116_4 pfkB family carbohydrate kinase K19978 - 2.7.1.187 0.0001689 46.0
DYD3_k127_4011146_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 6.21e-258 814.0
DYD3_k127_4011146_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 352.0
DYD3_k127_4011146_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000002108 80.0
DYD3_k127_4104095_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009459 481.0
DYD3_k127_4104095_1 Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 475.0
DYD3_k127_4104095_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008541 383.0
DYD3_k127_4104095_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 341.0
DYD3_k127_4104095_4 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001622 281.0
DYD3_k127_4104095_5 PFAM Chlorite dismutase - - - 0.0000000000000000000000000000000000000000000000000000000000000005561 226.0
DYD3_k127_4104095_6 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000402 211.0
DYD3_k127_4104095_7 Uroporphyrinogen-III synthase HemD K01719,K13542 GO:0003674,GO:0003824,GO:0004851,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008757,GO:0009058,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019354,GO:0019438,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046156,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.107,4.2.1.75 0.000000000000000000000000000000003487 138.0
DYD3_k127_4104095_8 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000002772 134.0
DYD3_k127_4104095_9 Nodulation protein S (NodS) - - - 0.0000000000001855 72.0
DYD3_k127_4215346_0 cell division ATP-binding protein FtsE K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008266 285.0
DYD3_k127_4215346_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002885 262.0
DYD3_k127_4215346_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000002549 245.0
DYD3_k127_4215346_3 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000001563 189.0
DYD3_k127_4215346_4 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.00000000000000000000000000000000133 141.0
DYD3_k127_4223575_0 PTS system sugar-specific permease component K03475 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 500.0
DYD3_k127_4223575_1 PolyA polymerase K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 335.0
DYD3_k127_4223575_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000002406 271.0
DYD3_k127_4223575_3 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000002623 205.0
DYD3_k127_4223575_4 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.000000000000000000000000000001656 131.0
DYD3_k127_4223575_5 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 - - - 0.000000000000000000000000000008928 131.0
DYD3_k127_4223575_6 PTS system, Lactose/Cellobiose specific IIB subunit K02822 - 2.7.1.194 0.000000000000000000005201 95.0
DYD3_k127_426613_0 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007291 528.0
DYD3_k127_426613_1 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 432.0
DYD3_k127_426613_2 Acyl-CoA dehydrogenase, middle domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 402.0
DYD3_k127_426613_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 GO:0002682,GO:0002683,GO:0005575,GO:0005576,GO:0008150,GO:0009605,GO:0009607,GO:0031347,GO:0031348,GO:0035821,GO:0040007,GO:0043207,GO:0044003,GO:0044403,GO:0044413,GO:0044414,GO:0044419,GO:0045088,GO:0045824,GO:0048519,GO:0048583,GO:0048585,GO:0050776,GO:0050777,GO:0050789,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0051832,GO:0051833,GO:0052031,GO:0052037,GO:0052167,GO:0052170,GO:0052173,GO:0052200,GO:0052255,GO:0052261,GO:0052306,GO:0052309,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0065007,GO:0075136,GO:0080134 4.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000001627 242.0
DYD3_k127_426613_4 Membrane - - - 0.0000000000000000000000000000000000000000000000008492 186.0
DYD3_k127_426613_5 Electron transfer flavoprotein domain K03522 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000003151 176.0
DYD3_k127_426613_6 AsnC family K03718 - - 0.000000000000000000000000000000000000000000003611 169.0
DYD3_k127_426613_7 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000003254 136.0
DYD3_k127_426613_8 MoeA domain protein domain I and II K00963,K03750 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0032324,GO:0034641,GO:0036211,GO:0042040,GO:0042278,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061598,GO:0061599,GO:0070566,GO:0071704,GO:0071944,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657 2.10.1.1,2.7.7.9 0.0000000000000000000000000000001525 128.0
DYD3_k127_426613_9 Electron transfer flavoprotein K03521 - - 0.0000000000000000006028 89.0
DYD3_k127_4280818_0 ABC transporter K06147 - - 6.904e-238 755.0
DYD3_k127_4280818_1 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 509.0
DYD3_k127_4280818_2 GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000001014 229.0
DYD3_k127_4280818_3 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000000008367 96.0
DYD3_k127_4322163_0 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 1.428e-269 852.0
DYD3_k127_4322163_1 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 3.036e-249 787.0
DYD3_k127_4322163_10 Calcineurin-like phosphoesterase K07313 - 3.1.3.16 0.0000000000000000001283 104.0
DYD3_k127_4322163_11 Transcriptional regulator K22293 - - 0.0004874 46.0
DYD3_k127_4322163_2 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K11381,K21416,K21417 - 1.2.4.1,1.2.4.4 1.957e-194 632.0
DYD3_k127_4322163_3 Dehydrogenase K00140 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007323 544.0
DYD3_k127_4322163_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 449.0
DYD3_k127_4322163_5 Transketolase K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 338.0
DYD3_k127_4322163_6 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003605 335.0
DYD3_k127_4322163_7 PFAM catalytic domain of components of various dehydrogenase complexes K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000001367 279.0
DYD3_k127_4322163_8 Transcriptional regulator K22293 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004953 255.0
DYD3_k127_4322163_9 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000004192 102.0
DYD3_k127_4323985_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 325.0
DYD3_k127_4323985_1 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 301.0
DYD3_k127_4323985_2 enoyl-CoA hydratase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000003628 231.0
DYD3_k127_4323985_3 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000003489 168.0
DYD3_k127_4323985_4 SnoaL-like domain - - - 0.000000000000000000000000000002555 124.0
DYD3_k127_4323985_5 2'-5' RNA ligase superfamily - - - 0.00000000000000000000000000001495 130.0
DYD3_k127_4323985_6 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.00000000000000000004369 92.0
DYD3_k127_4323985_7 Uncharacterized conserved protein (DUF2277) - - - 0.0000000000000000001533 91.0
DYD3_k127_4323985_8 PFAM Acetyltransferase (GNAT) family - - - 0.0000000000000000002875 101.0
DYD3_k127_4323985_9 PFAM Acetyltransferase (GNAT) family - - - 0.000139 54.0
DYD3_k127_4335811_0 GTP-binding protein TypA K06207 - - 9.426e-214 681.0
DYD3_k127_4335811_1 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 GO:0008150,GO:0040008,GO:0045926,GO:0048519,GO:0050789,GO:0065007 - 0.0000000000000000001686 93.0
DYD3_k127_4335811_2 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000004605 70.0
DYD3_k127_4335811_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000001827 59.0
DYD3_k127_4402758_0 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007916 455.0
DYD3_k127_4402758_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005931 278.0
DYD3_k127_4402758_2 transport, permease protein K09694 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002657 261.0
DYD3_k127_4402758_3 Transport permease protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000003485 231.0
DYD3_k127_4402758_4 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000007682 223.0
DYD3_k127_4402758_5 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000001722 207.0
DYD3_k127_4402758_6 Belongs to the UPF0173 family - - - 0.00000000000000000000000000000000000000000000000002673 187.0
DYD3_k127_4402758_7 - - - - 0.0000000000000000000000000000000000000001718 158.0
DYD3_k127_4402758_8 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000001042 147.0
DYD3_k127_4402758_9 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000247 128.0
DYD3_k127_4559647_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 505.0
DYD3_k127_4559647_1 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.00000000000000000000002729 117.0
DYD3_k127_4559647_2 Alpha-amylase domain K01187 - 3.2.1.20 0.000000000000000004408 87.0
DYD3_k127_4575746_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 6.652e-268 848.0
DYD3_k127_4575746_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000975 147.0
DYD3_k127_4575746_2 DnaJ molecular chaperone homology domain K03686,K05516 - - 0.00000000000000000000000000000002704 128.0
DYD3_k127_4575746_3 Transcriptional regulator, MerR family K13640 - - 0.00000000000000007295 87.0
DYD3_k127_4576317_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 505.0
DYD3_k127_4576317_1 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 465.0
DYD3_k127_4576317_2 Cysteine synthase K01697,K01738,K12339 - 2.5.1.47,4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 418.0
DYD3_k127_4576317_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000002219 243.0
DYD3_k127_4576317_4 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000002267 204.0
DYD3_k127_4576317_5 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000001182 173.0
DYD3_k127_4576317_6 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000000006785 141.0
DYD3_k127_4576317_7 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000000042 136.0
DYD3_k127_4576317_8 - - - - 0.000002384 59.0
DYD3_k127_4576317_9 Phosphate acyltransferases K00655 - 2.3.1.51 0.00001851 55.0
DYD3_k127_47959_0 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005911 429.0
DYD3_k127_47959_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 358.0
DYD3_k127_47959_10 Psort location Cytoplasmic, score K00760 - 2.4.2.8 0.00000000000000000000000000000000001638 139.0
DYD3_k127_47959_11 TrkA-N domain K03499,K10716 - - 0.0000000000000000000000000000000001496 145.0
DYD3_k127_47959_12 Universal stress protein family - - - 0.0000000000003719 74.0
DYD3_k127_47959_2 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 344.0
DYD3_k127_47959_3 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005231 322.0
DYD3_k127_47959_4 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 291.0
DYD3_k127_47959_5 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000001199 232.0
DYD3_k127_47959_6 TrkA-C domain K03499 - - 0.00000000000000000000000000000000000000000000000000000000000000003862 229.0
DYD3_k127_47959_7 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003806 228.0
DYD3_k127_47959_8 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000001531 180.0
DYD3_k127_47959_9 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 - 2.1.1.170 0.000000000000000000000000000000000000000000003921 175.0
DYD3_k127_4806042_0 Bacterial transcriptional activator domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 382.0
DYD3_k127_4806042_1 saccharopine dehydrogenase activity K19064 - 1.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005134 318.0
DYD3_k127_4806042_2 PFAM plasmid stabilization system K06218 - - 0.000000000000000000000002938 104.0
DYD3_k127_4806042_3 toxin-antitoxin pair type II binding K19159 - - 0.000000000000001355 80.0
DYD3_k127_4806042_4 neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.0000000000008629 81.0
DYD3_k127_4832342_0 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000006006 226.0
DYD3_k127_4832342_1 RibD C-terminal domain - - - 0.00000000000000000000000000000001593 136.0
DYD3_k127_4832342_2 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.0000000000000000000001551 107.0
DYD3_k127_4832342_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000008678 102.0
DYD3_k127_4832342_4 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0000000000003464 81.0
DYD3_k127_4832342_5 Cold shock K03704 - - 0.000000003151 61.0
DYD3_k127_4832342_6 - - - - 0.00003581 56.0
DYD3_k127_4832342_7 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.00009613 48.0
DYD3_k127_4841423_1 Pyridoxamine 5'-phosphate oxidase - - - 0.000000000000000000000000000000001181 135.0
DYD3_k127_4841423_2 TfoX N-terminal domain - - - 0.0000000000000000000000000000002301 129.0
DYD3_k127_4841423_3 cell redox homeostasis K02199 - - 0.00000000000000000000000007926 119.0
DYD3_k127_4841423_4 Sigma-70, region 4 K03088 - - 0.00000000000000000000001329 108.0
DYD3_k127_4841423_5 - - - - 0.000000000000000006006 89.0
DYD3_k127_4841423_6 Predicted integral membrane protein (DUF2269) - - - 0.000000000008361 75.0
DYD3_k127_4841423_7 - - - - 0.00000009556 58.0
DYD3_k127_4841423_8 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.00001261 49.0
DYD3_k127_4871659_0 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 1.746e-312 981.0
DYD3_k127_4871659_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 470.0
DYD3_k127_4871659_2 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 313.0
DYD3_k127_4871659_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001177 285.0
DYD3_k127_4871659_4 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002239 262.0
DYD3_k127_4871659_5 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000002478 79.0
DYD3_k127_4871659_6 Transcriptional regulator sugar kinase - - - 0.000004992 56.0
DYD3_k127_4910524_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 6.77e-238 747.0
DYD3_k127_4910524_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003719 579.0
DYD3_k127_4910524_2 Oligoendopeptidase f K01283 - 3.4.15.1 0.00000000000000000000000000000000000000000000000000000000000000000000000043 267.0
DYD3_k127_4910524_3 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0005353 51.0
DYD3_k127_496091_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 526.0
DYD3_k127_496091_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 423.0
DYD3_k127_496091_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 413.0
DYD3_k127_496091_3 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000002811 248.0
DYD3_k127_496091_4 Acetolactate synthase, small subunit K01653 - 2.2.1.6 0.0000000000000000000000000008203 130.0
DYD3_k127_4966143_0 cytochrome C assembly protein K02195 - - 0.000000000000000000000000000000000000000000000000000002971 205.0
DYD3_k127_4966143_1 ABC-type transport system involved in cytochrome c biogenesis permease component K02194 - - 0.0000000000000000000000000000000000000000000000009704 189.0
DYD3_k127_4966143_2 ATPase activity K01990,K02193 - 3.6.3.41 0.000000000000000000000000000000000000000004561 170.0
DYD3_k127_4966143_3 CHRD domain - - - 0.0000000000000000000001858 104.0
DYD3_k127_4966143_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000253 102.0
DYD3_k127_4966143_5 Cytochrome C assembly protein K02198,K04016 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564 - 0.000000000001177 72.0
DYD3_k127_4966143_6 Cupredoxin-like domain - - - 0.00006577 52.0
DYD3_k127_496831_0 PFAM DNA primase small subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 582.0
DYD3_k127_496831_1 ATP dependent DNA ligase C terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 439.0
DYD3_k127_496831_10 SMART Peptidoglycan-binding LysM - - - 0.00000000000000006828 93.0
DYD3_k127_496831_11 DEAD H associated domain protein K03724 - - 0.00000000000005184 76.0
DYD3_k127_496831_2 ATPases associated with a variety of cellular activities K16786,K16787 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 460.0
DYD3_k127_496831_3 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 407.0
DYD3_k127_496831_4 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000802 365.0
DYD3_k127_496831_5 transmembrane transporter activity K16785,K16786,K16787 - - 0.00000000000000000000000000000000000000000000000000000000000000005362 233.0
DYD3_k127_496831_6 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.00000000000000000000000000000000000000000000000000000000004623 215.0
DYD3_k127_496831_7 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000000000000000000000000144 192.0
DYD3_k127_496831_8 ECF-type riboflavin transporter, S component K16924 - - 0.0000000000000000000000000000001804 131.0
DYD3_k127_496831_9 Belongs to the UPF0761 family K07058 - - 0.0000000000000000001253 103.0
DYD3_k127_49940_0 PFAM Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 1.47e-213 676.0
DYD3_k127_49940_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 6.512e-196 619.0
DYD3_k127_49940_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 338.0
DYD3_k127_49940_11 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006284 352.0
DYD3_k127_49940_12 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009426 325.0
DYD3_k127_49940_13 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 310.0
DYD3_k127_49940_14 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 306.0
DYD3_k127_49940_15 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 299.0
DYD3_k127_49940_16 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 308.0
DYD3_k127_49940_17 SMART ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 300.0
DYD3_k127_49940_18 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003864 272.0
DYD3_k127_49940_19 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001225 246.0
DYD3_k127_49940_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 8.887e-194 621.0
DYD3_k127_49940_20 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000005342 235.0
DYD3_k127_49940_21 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000129 232.0
DYD3_k127_49940_22 PFAM ABC-2 type transporter K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000195 232.0
DYD3_k127_49940_23 PFAM DoxX family protein K16937 - 1.8.5.2 0.000000000000000000000000000000000000000000000000000000000000005528 225.0
DYD3_k127_49940_24 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000006861 219.0
DYD3_k127_49940_25 Thymidine kinase K00857 - 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000007551 216.0
DYD3_k127_49940_26 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000004211 209.0
DYD3_k127_49940_27 Belongs to the SOS response-associated peptidase family - - - 0.0000000000000000000000000000000000000000000000000003888 194.0
DYD3_k127_49940_28 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000004257 192.0
DYD3_k127_49940_29 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000199 172.0
DYD3_k127_49940_3 peptidase S9B dipeptidylpeptidase IV domain protein K01278 - 3.4.14.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 487.0
DYD3_k127_49940_30 aminopeptidase N - - - 0.000000000000000000000000000000000000000409 170.0
DYD3_k127_49940_31 COGs COG2343 conserved - - - 0.000000000000000000000000000000000003095 140.0
DYD3_k127_49940_32 helix_turn_helix, Arsenical Resistance Operon Repressor - GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043254,GO:0044087,GO:0044212,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0062012,GO:0065007,GO:0080090,GO:0090034,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000006099 139.0
DYD3_k127_49940_33 AAA domain K01090 - 3.1.3.16 0.0000000000000000000000000000000003105 143.0
DYD3_k127_49940_34 PFAM Polysaccharide pyruvyl transferase - - - 0.000000000000000000000000000000001474 143.0
DYD3_k127_49940_35 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000003878 131.0
DYD3_k127_49940_36 PFAM Activator of Hsp90 ATPase 1 family protein - - - 0.0000000000000000000000000000001191 134.0
DYD3_k127_49940_37 diguanylate cyclase - - - 0.0000000000000000000000000000005547 137.0
DYD3_k127_49940_38 Protein of unknown function (DUF1761) - - - 0.000000000000000000000000000001745 125.0
DYD3_k127_49940_39 - - - - 0.000000000000000000000000000002334 126.0
DYD3_k127_49940_4 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 446.0
DYD3_k127_49940_41 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000002268 114.0
DYD3_k127_49940_42 - - - - 0.000000000000000000000000005278 112.0
DYD3_k127_49940_43 Rieske 2Fe-2S - - - 0.0000000000000000000002375 108.0
DYD3_k127_49940_44 conserved protein, contains double-stranded beta-helix domain - - - 0.000000000000000000001054 99.0
DYD3_k127_49940_45 Psort location Cytoplasmic, score - - - 0.000000000000000001326 96.0
DYD3_k127_49940_46 PFAM regulatory protein, ArsR - - - 0.00000000000001378 80.0
DYD3_k127_49940_47 CBS domain - - - 0.00000000000003429 78.0
DYD3_k127_49940_48 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000007889 75.0
DYD3_k127_49940_49 LamG domain protein jellyroll fold domain protein - - - 0.000000000001575 81.0
DYD3_k127_49940_5 Phosphofructokinase K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 445.0
DYD3_k127_49940_50 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000008548 72.0
DYD3_k127_49940_51 Non-essential cell division protein that could be required for efficient cell constriction - - - 0.0000000001386 74.0
DYD3_k127_49940_52 Cupin 2, conserved barrel domain protein - - - 0.00000001067 64.0
DYD3_k127_49940_54 VIT family - - - 0.00000122 57.0
DYD3_k127_49940_55 VanZ like family - - - 0.00000245 56.0
DYD3_k127_49940_56 - - - - 0.00003191 53.0
DYD3_k127_49940_57 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00009113 54.0
DYD3_k127_49940_6 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 401.0
DYD3_k127_49940_7 CorA-like Mg2+ transporter protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 383.0
DYD3_k127_49940_8 Thermophilic metalloprotease (M29) K19689 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 382.0
DYD3_k127_49940_9 Multicopper oxidase K22348 - 1.16.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 371.0
DYD3_k127_5073988_0 ATPases associated with a variety of cellular activities K05847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007901 402.0
DYD3_k127_5073988_1 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000000000000000003021 209.0
DYD3_k127_5073988_2 ABC transporter (Permease) K05846 - - 0.000000000000000000000000000000000000000000000000000000001431 209.0
DYD3_k127_5073988_3 Binding-protein-dependent transport system inner membrane component K05846 - - 0.000000000000000000000000000000000000000000000000000002182 199.0
DYD3_k127_5073988_4 Substrate binding domain of ABC-type glycine betaine transport system K05845 - - 0.00000000000000000000000000000000000000000000008858 181.0
DYD3_k127_5080377_0 DEAD/H associated K03724 - - 0.0 1531.0
DYD3_k127_5080377_1 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 1.856e-211 692.0
DYD3_k127_5080377_10 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.0000000000000000000000000000000000000000000000003903 188.0
DYD3_k127_5080377_11 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.000000000000000000000000000000000000000000000004431 196.0
DYD3_k127_5080377_12 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000009747 158.0
DYD3_k127_5080377_13 diguanylate cyclase - - - 0.00000000000000000000000000000000000005722 164.0
DYD3_k127_5080377_14 F420H(2)-dependent quinone reductase - - - 0.00000000000000000000000001857 113.0
DYD3_k127_5080377_15 Multicopper oxidase K00368 - 1.7.2.1 0.00000000000000000003598 104.0
DYD3_k127_5080377_16 DSBA-like thioredoxin domain - - - 0.00000000000000000004486 103.0
DYD3_k127_5080377_17 transcriptional regulator - - - 0.0000000000005964 75.0
DYD3_k127_5080377_18 Heavy metal translocating P-type atpase K01533,K01534,K12954,K17686 - 3.6.3.3,3.6.3.4,3.6.3.5,3.6.3.54 0.00000003936 61.0
DYD3_k127_5080377_19 PFAM response regulator receiver - - - 0.00001009 59.0
DYD3_k127_5080377_2 Starch synthase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 490.0
DYD3_k127_5080377_3 Multicopper oxidase K00368 - 1.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004529 471.0
DYD3_k127_5080377_4 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 445.0
DYD3_k127_5080377_5 ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004226 398.0
DYD3_k127_5080377_6 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009952 387.0
DYD3_k127_5080377_7 histidine kinase dimerisation and phosphoacceptor region K03406,K07673,K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000008483 262.0
DYD3_k127_5080377_8 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000001488 233.0
DYD3_k127_5080377_9 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000001922 222.0
DYD3_k127_5130840_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 457.0
DYD3_k127_5130840_1 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 349.0
DYD3_k127_5130840_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001648 268.0
DYD3_k127_5130840_3 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000002032 210.0
DYD3_k127_5130840_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000001448 163.0
DYD3_k127_5130840_5 Mg2 transporter-C family protein K07507 - - 0.00000000000000000000000000001402 136.0
DYD3_k127_5130840_6 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000001583 84.0
DYD3_k127_5130840_7 Zinc finger domain - - - 0.000003033 59.0
DYD3_k127_5141349_0 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 2.196e-304 970.0
DYD3_k127_5141349_1 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000001881 150.0
DYD3_k127_5162130_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 379.0
DYD3_k127_5162130_1 PBP superfamily domain K02040 GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015698,GO:0016020,GO:0016036,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042301,GO:0042594,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0071496,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 336.0
DYD3_k127_5162130_10 subunit of a heme lyase K02200 - - 0.000000000000000008476 91.0
DYD3_k127_5162130_11 Ketosteroid isomerase-related protein - - - 0.00000000000002718 83.0
DYD3_k127_5162130_12 PFAM Cytochrome c assembly protein K02198 - - 0.00000000004086 69.0
DYD3_k127_5162130_13 SnoaL-like domain - - - 0.0000000006228 70.0
DYD3_k127_5162130_2 Binding-protein-dependent transport system inner membrane component K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 331.0
DYD3_k127_5162130_3 Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002541 273.0
DYD3_k127_5162130_4 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000001076 223.0
DYD3_k127_5162130_5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.0000000000000000000000000000000000000000000000000000000005969 209.0
DYD3_k127_5162130_6 YceI-like domain - - - 0.00000000000000000000000000000000000000000000000005625 186.0
DYD3_k127_5162130_7 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000003232 167.0
DYD3_k127_5162130_8 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000565 137.0
DYD3_k127_5162130_9 Thiol disulfide interchange protein K02199 - - 0.00000000000000000000000005738 117.0
DYD3_k127_5184163_0 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 505.0
DYD3_k127_5184163_1 Belongs to the GcvT family K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 383.0
DYD3_k127_5184163_2 Mur ligase family, catalytic domain K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 304.0
DYD3_k127_5184163_3 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000007358 248.0
DYD3_k127_5184163_4 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000002811 201.0
DYD3_k127_5184163_5 Competence-damaged protein K03743 - 3.5.1.42 0.0000000000000000000000000000001246 132.0
DYD3_k127_5184163_6 Rhodanese Homology Domain - - - 0.00000000000000000001331 98.0
DYD3_k127_5184163_7 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000001007 97.0
DYD3_k127_5184163_8 Domain of unknown function (DUF4115) - - - 0.0006794 49.0
DYD3_k127_5192771_0 aconitate hydratase activity K01681 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0015980,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0030312,GO:0030350,GO:0032787,GO:0040007,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046459,GO:0046872,GO:0046914,GO:0047456,GO:0048037,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:1901363 4.2.1.3 0.0 1085.0
DYD3_k127_5192771_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 566.0
DYD3_k127_5192771_10 Sugar isomerase (SIS) K15916 - 5.3.1.8,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000008512 237.0
DYD3_k127_5192771_11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000002759 209.0
DYD3_k127_5192771_12 PFAM ABC transporter related K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000002977 223.0
DYD3_k127_5192771_13 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000008746 226.0
DYD3_k127_5192771_14 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000000000000000007344 199.0
DYD3_k127_5192771_15 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.0000000000000000000000000000000000000000000000000235 192.0
DYD3_k127_5192771_16 COG1654 Biotin operon repressor K03524 - 6.3.4.15 0.00000000000000000000000000000009859 135.0
DYD3_k127_5192771_17 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000005398 131.0
DYD3_k127_5192771_18 permease - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.0000000000000000000000000000007353 141.0
DYD3_k127_5192771_19 Transcriptional - - - 0.0000000000000000000000002271 108.0
DYD3_k127_5192771_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006951 525.0
DYD3_k127_5192771_20 FR47-like protein - - - 0.0000000000000000000001551 108.0
DYD3_k127_5192771_21 PFAM zinc finger, SWIM domain protein - - - 0.00000000000000000001236 102.0
DYD3_k127_5192771_22 Domain of unknown function (DUF374) K09778 - - 0.0000000000000003545 87.0
DYD3_k127_5192771_3 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01835,K01840 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 437.0
DYD3_k127_5192771_4 Carboxyl transferase domain K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 299.0
DYD3_k127_5192771_5 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001072 287.0
DYD3_k127_5192771_6 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003686 299.0
DYD3_k127_5192771_7 Mannose-1-phosphate guanylyltransferase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001388 282.0
DYD3_k127_5192771_8 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000002073 231.0
DYD3_k127_5192771_9 ABC-type Fe3 -siderophore transport system, permease component K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000003738 246.0
DYD3_k127_5226320_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1578.0
DYD3_k127_5226320_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1523.0
DYD3_k127_5226320_2 alpha/beta hydrolase fold - - - 0.0000191 56.0
DYD3_k127_5241684_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 347.0
DYD3_k127_5241684_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000001471 205.0
DYD3_k127_5241684_3 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000002241 154.0
DYD3_k127_5312064_0 COG0160 4-aminobutyrate aminotransferase and related aminotransferases - - - 1.378e-199 647.0
DYD3_k127_5312064_1 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000931 436.0
DYD3_k127_5312064_10 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000001125 137.0
DYD3_k127_5312064_11 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000001508 98.0
DYD3_k127_5312064_12 Protein tyrosine kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.000000000000000793 90.0
DYD3_k127_5312064_13 general stress protein B in uncultured methanogenic archaeon (Q0W564) - - - 0.000000000005642 70.0
DYD3_k127_5312064_14 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000009593 66.0
DYD3_k127_5312064_2 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 332.0
DYD3_k127_5312064_3 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002373 288.0
DYD3_k127_5312064_4 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005544 287.0
DYD3_k127_5312064_5 serine-type endopeptidase activity K08372 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001581 268.0
DYD3_k127_5312064_6 PFAM Oxidoreductase, molybdopterin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001428 254.0
DYD3_k127_5312064_7 dihydropteroate synthase K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000009139 247.0
DYD3_k127_5312064_8 COG COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms Transcription - - - 0.0000000000000000000000000000000000000000000000000000000000001044 225.0
DYD3_k127_5312064_9 histidine kinase-, DNA gyrase B - - - 0.00000000000000000000000000000000000000000000009969 186.0
DYD3_k127_5531099_0 glutamine synthetase K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002825 526.0
DYD3_k127_5531099_1 PFAM Cys Met metabolism pyridoxal-phosphate-dependent protein K01758,K01761 - 4.4.1.1,4.4.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 322.0
DYD3_k127_5531099_2 Glycosyltransferase, group 4 family K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000001018 238.0
DYD3_k127_5531099_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000758 215.0
DYD3_k127_5531099_4 cell envelope-related transcriptional attenuator - - - 0.0000000000000000000000000000000000002516 160.0
DYD3_k127_5531099_5 DinB superfamily - - - 0.0000000000000000000000000000000002506 140.0
DYD3_k127_5531099_6 response regulator receiver K03413 - - 0.000000000000000000000000000000008678 145.0
DYD3_k127_5531099_7 cell envelope-related transcriptional attenuator - - - 0.0000000000000000000000000008246 129.0
DYD3_k127_5531099_9 PucR C-terminal helix-turn-helix domain - - - 0.0009758 51.0
DYD3_k127_5534161_0 PFAM UBA THIF-type NAD FAD binding protein K21029,K21147 - 2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007616 406.0
DYD3_k127_5534161_1 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01697,K01738,K12339 - 2.5.1.47,4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 385.0
DYD3_k127_5534161_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000002614 237.0
DYD3_k127_5534161_3 SUF system FeS assembly protein, NifU family K04488 - - 0.000000000000000000000000000000000007241 143.0
DYD3_k127_5534161_4 Mov34 MPN PAD-1 family K21140 - 3.13.1.6 0.0000000000000000000000000000001748 129.0
DYD3_k127_5534161_5 PFAM thiamineS protein K03636 - - 0.00000000000000000000000002365 117.0
DYD3_k127_5554053_0 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007393 528.0
DYD3_k127_5554053_1 Protein of unknown function (DUF2867) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 496.0
DYD3_k127_5554053_10 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000004557 220.0
DYD3_k127_5554053_11 - K01081,K07004 - 3.1.3.5 0.00000000000000000000000000000000000000000000276 182.0
DYD3_k127_5554053_12 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000005202 179.0
DYD3_k127_5554053_13 PFAM Lysine exporter protein (LYSE YGGA) - - - 0.0000000000000000000000000000000000008676 146.0
DYD3_k127_5554053_14 YCII-related domain - - - 0.0000000000000000000000000000000002361 135.0
DYD3_k127_5554053_15 xyloglucan:xyloglucosyl transferase activity K01216 - 3.2.1.73 0.0000000000000000000000000000000006469 135.0
DYD3_k127_5554053_16 Domain of unknown function (DU1801) - - - 0.000000000000000000000005199 114.0
DYD3_k127_5554053_17 Lamin Tail Domain - - - 0.00000000000000000000001818 115.0
DYD3_k127_5554053_18 Acetyltransferase (GNAT) domain - - - 0.0000000004638 67.0
DYD3_k127_5554053_19 - - - - 0.000008071 55.0
DYD3_k127_5554053_2 Aminotransferase K11358 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 423.0
DYD3_k127_5554053_3 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 338.0
DYD3_k127_5554053_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007174 359.0
DYD3_k127_5554053_5 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003722 271.0
DYD3_k127_5554053_6 Domain of unknown function (DUF4389) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005989 248.0
DYD3_k127_5554053_7 Tetracyclin repressor, C-terminal all-alpha domain - - - 0.000000000000000000000000000000000000000000000000000000000000003335 229.0
DYD3_k127_5554053_8 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000005213 231.0
DYD3_k127_5554053_9 RmlD substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000001774 216.0
DYD3_k127_556516_0 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 326.0
DYD3_k127_556516_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005129 280.0
DYD3_k127_556516_2 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000004086 231.0
DYD3_k127_556516_3 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000000000007588 225.0
DYD3_k127_556516_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000003382 162.0
DYD3_k127_556516_5 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000008271 175.0
DYD3_k127_556516_6 Domain of unknown function DUF11 - - - 0.000000000000000000142 104.0
DYD3_k127_556516_7 TIGRFAM phenylacetate-CoA oxygenase, PaaJ subunit K02612 - - 0.000000000000004927 74.0
DYD3_k127_556516_8 Phenylacetate-CoA oxygenase K02612 - - 0.00000002159 55.0
DYD3_k127_5566635_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 570.0
DYD3_k127_5566635_1 Major Facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 337.0
DYD3_k127_5566635_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 287.0
DYD3_k127_5566635_3 Bacterial transcriptional repressor C-terminal - - - 0.0000000000000000000000000000000001161 141.0
DYD3_k127_5566635_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 - 1.6.5.3 0.0000000000000000001425 100.0
DYD3_k127_5566635_5 Belongs to the complex I subunit 6 family K00339,K05578 - 1.6.5.3 0.000000000000000002889 92.0
DYD3_k127_5606210_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 438.0
DYD3_k127_5606210_1 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 348.0
DYD3_k127_5606210_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000008426 194.0
DYD3_k127_5606210_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000001366 183.0
DYD3_k127_5606210_4 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000002107 180.0
DYD3_k127_5606210_5 YGGT family K02221 - - 0.0000000000000005805 81.0
DYD3_k127_5606210_6 DUF167 K09131 - - 0.00003515 52.0
DYD3_k127_5633830_0 DNA polymerase LigD, polymerase K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 589.0
DYD3_k127_5633830_1 DegT/DnrJ/EryC1/StrS aminotransferase family K04127 - 5.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008882 450.0
DYD3_k127_5633830_2 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.0000000000000000000000000000000000000000000000000000000004195 215.0
DYD3_k127_5633830_3 DNA polymerase Ligase (LigD) - - - 0.0000000000000000000000000000000000000000000000000000000006738 230.0
DYD3_k127_5633830_4 - - - - 0.000000000000000000000000000000000000000418 167.0
DYD3_k127_5633830_5 glycolate biosynthetic process K01091 - 3.1.3.18 0.000000000000000000000001581 120.0
DYD3_k127_5633830_6 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.000008218 53.0
DYD3_k127_5718912_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006066 370.0
DYD3_k127_5718912_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000005602 203.0
DYD3_k127_5718912_2 Family of unknown function (DUF5317) - - - 0.0000000000000000000009198 102.0
DYD3_k127_5718912_3 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000008878 51.0
DYD3_k127_5731544_0 ATPases associated with a variety of cellular activities K16786,K16787 - - 0.00000000000000000000000000000000000000000000000000000000000000001079 235.0
DYD3_k127_5731544_1 PFAM inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000004347 171.0
DYD3_k127_5731544_2 PFAM NUDIX hydrolase - - - 0.00000000000000000000000000000005025 134.0
DYD3_k127_5731544_3 FCD - - - 0.0000000000000000001679 98.0
DYD3_k127_5743762_0 ATPase with chaperone activity K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004034 421.0
DYD3_k127_5743762_1 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005762 400.0
DYD3_k127_5743762_2 Alcohol dehydrogenase zinc-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 377.0
DYD3_k127_5743762_3 PFAM band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 319.0
DYD3_k127_5743762_4 PFAM response regulator receiver K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000109 232.0
DYD3_k127_5743762_5 DNA recombination-mediator protein A K04096 - - 0.000000000000000000000000000000000000000000000004417 194.0
DYD3_k127_5743762_6 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000006814 149.0
DYD3_k127_5757506_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0034220,GO:0040007,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600 1.9.3.1 2.929e-214 678.0
DYD3_k127_5757506_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004277 607.0
DYD3_k127_5757506_10 Serine threonine protein kinase involved in cell cycle control - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001013 259.0
DYD3_k127_5757506_11 major pilin protein fima - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001425 261.0
DYD3_k127_5757506_12 Belongs to the peptidase S8 family K14645 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005655 254.0
DYD3_k127_5757506_13 Major facilitator Superfamily K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003768 255.0
DYD3_k127_5757506_14 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000686 241.0
DYD3_k127_5757506_15 Cytochrome c oxidase caa3-type, assembly factor CtaG-related K02351,K07245 - - 0.0000000000000000000000000000000000000000000000000000002424 217.0
DYD3_k127_5757506_16 transport, permease protein K01992 - - 0.000000000000000000000000000000000000000000000000004526 190.0
DYD3_k127_5757506_17 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009319,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0034641,GO:0040007,GO:0042773,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044121,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0051704,GO:0055086,GO:0055114,GO:0070069,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.9.3.1 0.0000000000000000000000000000000000000000001723 172.0
DYD3_k127_5757506_18 - - - - 0.000000000000000000000000000000000000000003473 179.0
DYD3_k127_5757506_19 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000003071 165.0
DYD3_k127_5757506_2 MMPL family K06994,K20470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 457.0
DYD3_k127_5757506_20 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000005535 158.0
DYD3_k127_5757506_21 Protein of unknown function (DUF3037) - - - 0.000000000000000000000000000000000001021 143.0
DYD3_k127_5757506_22 Heme copper-type cytochrome quinol oxidase subunit 3 K02276 - 1.9.3.1 0.000000000000000000000000000000000001372 146.0
DYD3_k127_5757506_23 Acetyltransferase (GNAT) domain K03824,K09964 - - 0.000000000000000000000000000000000001834 149.0
DYD3_k127_5757506_24 negative regulation of translational initiation K05554,K15885 - - 0.000000000000000000000000000000000002504 151.0
DYD3_k127_5757506_25 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000003288 144.0
DYD3_k127_5757506_26 periplasmic protein thiol disulfide oxidoreductases, DsbE subfamily K02199 - - 0.0000000000000000000000000000001476 132.0
DYD3_k127_5757506_27 ACT domain protein - - - 0.0000000000000000000000002527 111.0
DYD3_k127_5757506_28 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000000000000003394 96.0
DYD3_k127_5757506_29 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000003601 96.0
DYD3_k127_5757506_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 424.0
DYD3_k127_5757506_30 GAF domain - - - 0.00000000000000001462 93.0
DYD3_k127_5757506_31 Bacterial regulatory proteins, tetR family - - - 0.00000000000000001462 93.0
DYD3_k127_5757506_4 3-oxoacyl-[acyl-carrier-protein] synthase activity K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 417.0
DYD3_k127_5757506_5 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 359.0
DYD3_k127_5757506_6 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005419 340.0
DYD3_k127_5757506_7 L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 334.0
DYD3_k127_5757506_8 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0030312,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 304.0
DYD3_k127_5757506_9 geranylgeranyl reductase activity K21401 - 1.3.99.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006455 302.0
DYD3_k127_5778846_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007507 467.0
DYD3_k127_5778846_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 395.0
DYD3_k127_5852390_0 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 565.0
DYD3_k127_5852390_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 510.0
DYD3_k127_5852390_10 Carotenoid biosynthesis protein K22502 - 5.5.1.19 0.00000000000000004658 96.0
DYD3_k127_5852390_11 Rieske-like [2Fe-2S] domain K05710 - - 0.0000000000000001485 86.0
DYD3_k127_5852390_12 Lactonase, 7-bladed beta-propeller - - - 0.000000000518 68.0
DYD3_k127_5852390_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 455.0
DYD3_k127_5852390_3 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006748 417.0
DYD3_k127_5852390_4 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 417.0
DYD3_k127_5852390_5 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 327.0
DYD3_k127_5852390_6 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 295.0
DYD3_k127_5852390_7 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K21142 - 2.8.1.12 0.000000000000000000000000000000000000000003765 172.0
DYD3_k127_5852390_8 PFAM NUDIX domain - - - 0.0000000000000000000000000000000000000003875 158.0
DYD3_k127_5852390_9 Transmembrane secretion effector - - - 0.0000000000000000000003586 103.0
DYD3_k127_5869546_0 - - - - 0.0000000000000000000000000000000001061 140.0
DYD3_k127_5869546_1 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000002263 112.0
DYD3_k127_5869546_2 TadE-like protein - - - 0.0000006513 60.0
DYD3_k127_5869546_3 Putative Flp pilus-assembly TadE/G-like - - - 0.00001251 58.0
DYD3_k127_5869546_4 PFAM TadE family protein - - - 0.0001917 53.0
DYD3_k127_5902401_0 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 6.446e-228 754.0
DYD3_k127_5902401_1 ABC-type multidrug transport system, ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 393.0
DYD3_k127_5902401_2 ABC-type multidrug transport system, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003692 274.0
DYD3_k127_5902401_3 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000559 263.0
DYD3_k127_5902401_4 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002069 228.0
DYD3_k127_5902401_5 YjbR - - - 0.000000000000000000000000002727 116.0
DYD3_k127_5902401_6 - - - - 0.000000000000005192 75.0
DYD3_k127_5913003_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 378.0
DYD3_k127_5913003_1 Cytochrome b(N-terminal)/b6/petB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 327.0
DYD3_k127_5913003_2 NTF2-like N-terminal transpeptidase domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000008474 252.0
DYD3_k127_5913003_3 GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000000000000000000000000000001107 220.0
DYD3_k127_5913003_4 serine-type aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000009217 207.0
DYD3_k127_5913003_5 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.0000000000000000000000000000000000000000000002731 179.0
DYD3_k127_5951804_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 5.709e-229 740.0
DYD3_k127_5951804_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 587.0
DYD3_k127_5951804_10 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000006723 237.0
DYD3_k127_5951804_11 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000003694 229.0
DYD3_k127_5951804_12 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000009561 218.0
DYD3_k127_5951804_13 Belongs to the pseudouridine synthase RsuA family K06178,K06182 - 5.4.99.21,5.4.99.22 0.000000000000000000000000000000000000000000000000000003267 210.0
DYD3_k127_5951804_14 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000001476 187.0
DYD3_k127_5951804_15 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000001222 175.0
DYD3_k127_5951804_16 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000003788 180.0
DYD3_k127_5951804_17 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000002414 153.0
DYD3_k127_5951804_18 zinc metalloprotease - - - 0.0000000000000000000000000000000000007985 146.0
DYD3_k127_5951804_19 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000861 146.0
DYD3_k127_5951804_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 352.0
DYD3_k127_5951804_20 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000000000000000000000009588 121.0
DYD3_k127_5951804_21 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.00000000000000000000000000008385 129.0
DYD3_k127_5951804_22 PFAM membrane-flanked domain - - - 0.000000000000000000000000001641 123.0
DYD3_k127_5951804_23 transferase activity, transferring acyl groups K15520 - 2.3.1.189 0.0000000000000000000000002129 115.0
DYD3_k127_5951804_24 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.000000000000000000000902 106.0
DYD3_k127_5951804_25 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000001559 101.0
DYD3_k127_5951804_26 PFAM HD domain - - - 0.00000000000000002028 88.0
DYD3_k127_5951804_27 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000002264 59.0
DYD3_k127_5951804_28 Uncharacterised protein family (UPF0180) - - - 0.0007768 49.0
DYD3_k127_5951804_29 Baseplate J-like protein K01218 - 3.2.1.78 0.0007815 52.0
DYD3_k127_5951804_3 cell division - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000575 336.0
DYD3_k127_5951804_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000744 334.0
DYD3_k127_5951804_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002487 280.0
DYD3_k127_5951804_6 PFAM peptidase M24 K01262,K01271 - 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000003075 265.0
DYD3_k127_5951804_7 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001061 259.0
DYD3_k127_5951804_8 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000005781 253.0
DYD3_k127_5951804_9 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000008208 249.0
DYD3_k127_5997034_0 PFAM pyruvate carboxyltransferase K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009536 297.0
DYD3_k127_5997034_1 ATPases associated with a variety of cellular activities K16786,K16787 - - 0.0000000000000000000000000000000000000000000000000000000000008029 219.0
DYD3_k127_5997034_2 PFAM Inosine uridine-preferring nucleoside hydrolase K01239 - 3.2.2.1 0.0000000000000000000000000000000000000000000000000002454 198.0
DYD3_k127_5997034_3 phosphorelay sensor kinase activity K16923,K18967 - 2.7.7.65 0.0000000000000000000000000000000000000000000003933 181.0
DYD3_k127_5997034_4 Cobalt transport protein K02008,K16785 - - 0.000000000000000000000000000000000000000000001461 175.0
DYD3_k127_5997034_5 ATPases associated with a variety of cellular activities K16786,K16787 - - 0.000000000000000001038 88.0
DYD3_k127_5997034_6 Biotin carboxylase C-terminal domain K01968,K13777 - 6.4.1.4,6.4.1.5 0.0000000000001412 73.0
DYD3_k127_6034611_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 609.0
DYD3_k127_6034611_1 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000006751 224.0
DYD3_k127_6034611_2 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.0000000000000000000000000000000004209 147.0
DYD3_k127_6034611_3 Bacterial lipid A biosynthesis acyltransferase K22311 - 2.3.1.265 0.00000000000000000000000000001498 129.0
DYD3_k127_6034611_4 SMART phosphoesterase PHP domain protein - - - 0.00000000000000000000000000005056 121.0
DYD3_k127_6034611_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K00999 GO:0003674,GO:0003824,GO:0003881,GO:0003882,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.11,2.7.8.5 0.0000000000000000000000000001965 124.0
DYD3_k127_6034611_6 Kdo2-lipid A biosynthetic process K02517,K22311 - 2.3.1.241,2.3.1.265 0.000000000000000000000000001412 128.0
DYD3_k127_6034611_7 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000000000001078 100.0
DYD3_k127_6034611_8 DNA-binding transcription factor activity K03892 - - 0.000000000001429 72.0
DYD3_k127_6034611_9 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.00000001556 60.0
DYD3_k127_6042316_0 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 1.016e-238 759.0
DYD3_k127_6042316_1 AAA ATPase domain - - - 3.862e-235 773.0
DYD3_k127_6042316_10 Protein of unknown function (DUF642) - - - 0.000000000000000000001986 112.0
DYD3_k127_6042316_11 SnoaL-like domain K06893 - - 0.0000000000000000001814 92.0
DYD3_k127_6042316_12 Polymer-forming cytoskeletal - - - 0.000000000000000006166 98.0
DYD3_k127_6042316_13 - - - - 0.000000000008752 78.0
DYD3_k127_6042316_2 membrane K13277,K15125,K15539 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004899 512.0
DYD3_k127_6042316_3 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007592 460.0
DYD3_k127_6042316_4 Dihydroorotate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007136 395.0
DYD3_k127_6042316_5 Belongs to the MenA family. Type 1 subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004614 329.0
DYD3_k127_6042316_6 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 303.0
DYD3_k127_6042316_7 methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000004011 205.0
DYD3_k127_6042316_8 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000007978 168.0
DYD3_k127_6042316_9 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.000000000000000000000000000006966 136.0
DYD3_k127_6101317_0 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 471.0
DYD3_k127_6101317_1 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002367 294.0
DYD3_k127_6101317_2 Clp protease K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000001549 216.0
DYD3_k127_6101317_3 Protein of unknown function (DUF3105) - - - 0.00000000000000005001 91.0
DYD3_k127_6101317_4 Ami_3 K01448 - 3.5.1.28 0.000000000000005253 87.0
DYD3_k127_611981_0 Belongs to the cysteine synthase cystathionine beta- synthase family - - - 2.292e-198 636.0
DYD3_k127_611981_1 RNase_H superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 574.0
DYD3_k127_611981_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 501.0
DYD3_k127_611981_3 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 481.0
DYD3_k127_611981_4 Pyridoxal-phosphate dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006068 447.0
DYD3_k127_611981_5 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 375.0
DYD3_k127_611981_6 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000003131 211.0
DYD3_k127_611981_7 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000002455 169.0
DYD3_k127_611981_8 3-demethylubiquinone-9 3-O-methyltransferase activity K03428 - 2.1.1.11 0.000000000000000000000000000000002261 143.0
DYD3_k127_611981_9 Patatin-like phospholipase - - - 0.00000000000000000000000007581 119.0
DYD3_k127_6129049_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 GO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009316,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008464 526.0
DYD3_k127_6129049_1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 443.0
DYD3_k127_6129049_10 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000007304 214.0
DYD3_k127_6129049_11 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000001074 208.0
DYD3_k127_6129049_12 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000000000000000000000000336 188.0
DYD3_k127_6129049_13 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000007796 172.0
DYD3_k127_6129049_14 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000000000000000000000000000001137 173.0
DYD3_k127_6129049_15 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0005488,GO:0036094,GO:0048037,GO:0050661,GO:0050662,GO:0097159,GO:1901265,GO:1901363 1.1.1.25 0.00000000000000000000000000000000000000000007475 177.0
DYD3_k127_6129049_16 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000144 160.0
DYD3_k127_6129049_17 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K18009 - 1.1.1.304,1.1.1.76 0.0000000000000000000000000000001557 133.0
DYD3_k127_6129049_18 Sulfurtransferase TusA - - - 0.000000000000000000000000001434 114.0
DYD3_k127_6129049_19 DsrE/DsrF-like family - - - 0.00000000000000000000002309 104.0
DYD3_k127_6129049_2 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 382.0
DYD3_k127_6129049_20 Sulfurtransferase TusA - - - 0.000000000000000000005388 96.0
DYD3_k127_6129049_21 Transcriptional K03892 - - 0.000000000000000000127 93.0
DYD3_k127_6129049_22 - - - - 0.00000000000003011 81.0
DYD3_k127_6129049_23 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000007618 75.0
DYD3_k127_6129049_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000963 364.0
DYD3_k127_6129049_4 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 347.0
DYD3_k127_6129049_5 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000173 282.0
DYD3_k127_6129049_6 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000003161 278.0
DYD3_k127_6129049_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005567 268.0
DYD3_k127_6129049_8 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000007664 242.0
DYD3_k127_6129049_9 Prephenate dehydratase K04518,K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000004246 214.0
DYD3_k127_6170494_0 Belongs to the peptidase S8 family - - - 1.485e-270 865.0
DYD3_k127_6170494_1 Trypsin-like serine protease - - - 0.00000000000000000000000000000000000000000000000007862 179.0
DYD3_k127_6187469_0 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009933 593.0
DYD3_k127_6187469_1 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 332.0
DYD3_k127_6187469_2 ABC-2 type transporter - - - 0.000000000000000000000000000000000000000001059 168.0
DYD3_k127_6187469_3 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000003271 153.0
DYD3_k127_6187469_4 Domain of unknown function (DUF296) K06934 - - 0.000000000000000000000000000005215 124.0
DYD3_k127_6187469_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000002125 95.0
DYD3_k127_6187469_6 FtsX-like permease family K02004 - - 0.0000000000000006375 86.0
DYD3_k127_6196642_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 - 2.919e-231 725.0
DYD3_k127_6196642_1 PFAM AMP-dependent synthetase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003881 464.0
DYD3_k127_6196642_10 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000001262 130.0
DYD3_k127_6196642_11 Transcriptional regulator - - - 0.0000000000000000000000000003757 121.0
DYD3_k127_6196642_12 cyclic nucleotide binding K10914 - - 0.00000000000000000000000002619 115.0
DYD3_k127_6196642_13 PFAM Rieske 2Fe-2S domain K05710 - - 0.0000000000000002659 85.0
DYD3_k127_6196642_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 361.0
DYD3_k127_6196642_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 353.0
DYD3_k127_6196642_4 PFAM ABC transporter related K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 325.0
DYD3_k127_6196642_5 Subtilase family K14743 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003421 294.0
DYD3_k127_6196642_6 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001488 258.0
DYD3_k127_6196642_7 PA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003217 262.0
DYD3_k127_6196642_8 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000004119 237.0
DYD3_k127_6196642_9 Reductase C-terminal K00529 - 1.18.1.3 0.00000000000000000000000000000000000000000000000000000000007404 223.0
DYD3_k127_6210825_0 ATPases associated with a variety of cellular activities K16785,K16786,K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008169 431.0
DYD3_k127_6210825_1 ABC-type cobalt transport system, permease component K16925 - - 0.00000000000000000000000000000000000000000000000000001347 203.0
DYD3_k127_6210825_2 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000001939 181.0
DYD3_k127_6210825_3 PFAM Thiamin pyrophosphokinase, catalytic region K00949 - 2.7.6.2 0.0000000000000000000000000000000000009155 149.0
DYD3_k127_6210825_4 YbaK prolyl-tRNA synthetase associated region - - - 0.000000000000000000000000000000003289 145.0
DYD3_k127_6210825_5 domain protein K21687 - - 0.000000000001901 80.0
DYD3_k127_6222189_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030145,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046537,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 513.0
DYD3_k127_6222189_1 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008119 332.0
DYD3_k127_6222189_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000002677 220.0
DYD3_k127_6222189_3 cyclic nucleotide binding K07058,K14266 - 1.14.19.9 0.000000000000000000000000000000000000000000000000000000000006767 214.0
DYD3_k127_6222189_4 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000002551 199.0
DYD3_k127_6222189_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000001822 107.0
DYD3_k127_6222189_6 Preprotein translocase SecG subunit K03075 - - 0.00000000003881 74.0
DYD3_k127_6222189_7 - - - - 0.0000007104 57.0
DYD3_k127_6247948_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.41e-208 665.0
DYD3_k127_6247948_1 Belongs to the transketolase family K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000957 513.0
DYD3_k127_6247948_2 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 433.0
DYD3_k127_6247948_3 Isochorismatase family K08281 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006767,GO:0006769,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008936,GO:0009820,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0071704,GO:0072524,GO:1901360,GO:1901564 3.5.1.19 0.00000000000000000000000000000000000000000000000000000000000002523 222.0
DYD3_k127_6247948_4 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009319,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0034641,GO:0040007,GO:0042773,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044121,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0051704,GO:0055086,GO:0055114,GO:0070069,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.9.3.1 0.00000000000000000000000000000000000000000000003544 179.0
DYD3_k127_6247948_5 Probable zinc-ribbon domain - - - 0.0000000000000000000000000000000001499 135.0
DYD3_k127_6247948_6 Cytochrome b K03891 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000000000000006436 130.0
DYD3_k127_6247948_7 NnrU protein - - - 0.00000000000000000000000003499 116.0
DYD3_k127_6247948_8 Transcriptional regulator, MarR family - - - 0.00000000004158 72.0
DYD3_k127_6292605_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 8.259e-242 764.0
DYD3_k127_6292605_1 Participates in initiation and elongation during chromosome replication K02314,K02316,K17680 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000003354 249.0
DYD3_k127_6292605_2 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000001683 141.0
DYD3_k127_6292605_3 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED - - - 0.0000000000000000000000000007447 122.0
DYD3_k127_6292605_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000002657 115.0
DYD3_k127_6292605_5 to Saccharomyces cerevisiae YDJ1 (YNL064C) K09503 GO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006403,GO:0006404,GO:0006457,GO:0006458,GO:0006508,GO:0006511,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007005,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0019538,GO:0019941,GO:0030163,GO:0030234,GO:0030433,GO:0030544,GO:0031072,GO:0032781,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0035719,GO:0036503,GO:0042026,GO:0042221,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043462,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051031,GO:0051082,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072655,GO:0080134,GO:0080135,GO:0098772,GO:1900034,GO:1900035,GO:1901564,GO:1901565,GO:1901575,GO:1901698 - 0.0000002179 58.0
DYD3_k127_6292605_6 PFAM TadE family protein - - - 0.000001035 59.0
DYD3_k127_6321328_0 Heat shock 70 kDa protein K04043 - - 1.731e-263 826.0
DYD3_k127_6321328_1 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003108 278.0
DYD3_k127_6321328_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001898 252.0
DYD3_k127_6321328_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000000000000007716 154.0
DYD3_k127_6321328_4 Large-conductance mechanosensitive channel, MscL K03282 - - 0.0000000000000000000000000000002747 128.0
DYD3_k127_6321328_5 - - - - 0.0000000002274 70.0
DYD3_k127_6345716_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 3.6.3.14 2.084e-222 704.0
DYD3_k127_6345716_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001899 283.0
DYD3_k127_6345716_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000002463 141.0
DYD3_k127_6456036_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 471.0
DYD3_k127_6456036_1 translation initiation factor activity K06996 - - 0.000000000000000000001199 102.0
DYD3_k127_6456036_2 Alpha beta hydrolase - - - 0.000000000000004191 76.0
DYD3_k127_6456036_3 GYD domain - - - 0.00002533 48.0
DYD3_k127_6457284_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005639 585.0
DYD3_k127_6457284_1 ABC transporter substrate-binding protein K15580 - - 0.000000000000000000000000000000000000001523 160.0
DYD3_k127_6457284_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000465 151.0
DYD3_k127_6457284_3 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000005564 123.0
DYD3_k127_6541709_0 Molybdopterin oxidoreductase - - - 0.0 1384.0
DYD3_k127_6541709_1 nitrate reductase beta subunit K00371,K16965,K17048,K17051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 570.0
DYD3_k127_6541709_2 Predicted membrane protein (DUF2254) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 342.0
DYD3_k127_6541709_3 Protein of unknown function (DUF2652) - - - 0.0000000000000000000000000000000000000000000000000000000000000001688 237.0
DYD3_k127_6541709_4 protein complex oligomerization - - - 0.00000000000000000000004019 110.0
DYD3_k127_6541709_5 transcriptional regulator, Rrf2 family - - - 0.0000000000000000002261 93.0
DYD3_k127_6541709_6 chaperone-mediated protein complex assembly K00373,K17052 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - 0.00000000009278 73.0
DYD3_k127_6541709_7 - - - - 0.000000001415 61.0
DYD3_k127_6549603_0 Cell division protein FtsA K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 443.0
DYD3_k127_6549603_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 362.0
DYD3_k127_6549603_2 Belongs to the FPG family K05522 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000005951 248.0
DYD3_k127_6549603_3 Domain of unknown function (DUF1905) - - - 0.00000000000000000007288 95.0
DYD3_k127_6549603_4 DNA polymerase alpha chain like domain - - - 0.00001687 55.0
DYD3_k127_6619988_0 Peptidase family S58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005488 280.0
DYD3_k127_6619988_1 PFAM NADH Ubiquinone plastoquinone (complex I) K05559,K14086 - - 0.000000000000000000000000000000000000000000000000000000000003673 231.0
DYD3_k127_6619988_2 - - - - 0.0000000000000000000000000000000007985 137.0
DYD3_k127_6619988_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000001506 136.0
DYD3_k127_6619988_4 Cold shock K03704 - - 0.00000000008016 66.0
DYD3_k127_6619988_5 ACT domain protein - - - 0.00000001224 68.0
DYD3_k127_6651269_0 Carboxyl transferase domain K01969 - 6.4.1.4 1.201e-245 767.0
DYD3_k127_6651269_1 Biotin carboxylase C-terminal domain K13777 - 6.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 363.0
DYD3_k127_6651269_2 Enoyl-CoA hydratase/isomerase K13766,K13779 - 4.2.1.18,4.2.1.57 0.00000000000000000000000000000000000000000000000000000000001365 224.0
DYD3_k127_6651269_3 TIGRFAM LPXTG-motif cell wall anchor domain - - - 0.000000000000000000000000000000000000000000003318 173.0
DYD3_k127_6651269_4 tRNA-binding protein K06878 - - 0.0000000000000000000000000000000001227 137.0
DYD3_k127_6651269_5 - - - - 0.000000000000000000000000000323 132.0
DYD3_k127_6651269_6 Glyoxalase-like domain - - - 0.0000000000000008694 87.0
DYD3_k127_6653312_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009266,GO:0009295,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016465,GO:0030312,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0040007,GO:0042026,GO:0042262,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043388,GO:0043590,GO:0044093,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0050896,GO:0051082,GO:0051098,GO:0051099,GO:0051101,GO:0051716,GO:0061077,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090143,GO:0090304,GO:0097159,GO:0101031,GO:1901360,GO:1901363,GO:1990220,GO:2000677,GO:2000679 - 3.212e-213 676.0
DYD3_k127_6653312_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 1.669e-197 637.0
DYD3_k127_6653312_10 SnoaL-like domain - - - 0.0000000000000002168 84.0
DYD3_k127_6653312_11 YCII-related domain - - - 0.0000000000001462 78.0
DYD3_k127_6653312_12 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000002311 73.0
DYD3_k127_6653312_13 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000001568 64.0
DYD3_k127_6653312_14 Protein of unknown function (DUF1706) - - - 0.000000005147 64.0
DYD3_k127_6653312_15 Alpha beta hydrolase - - - 0.00000001923 65.0
DYD3_k127_6653312_16 Domain of unknown function (DUF4268) - - - 0.0000006996 60.0
DYD3_k127_6653312_2 ATP-dependent DNA helicase K03657 - 3.6.4.12 4.119e-197 649.0
DYD3_k127_6653312_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 GO:0008150,GO:0040007 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 591.0
DYD3_k127_6653312_4 transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 374.0
DYD3_k127_6653312_5 COG2513 PEP phosphonomutase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000003719 237.0
DYD3_k127_6653312_6 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000006801 224.0
DYD3_k127_6653312_7 - - - - 0.00000000000000000000000006847 111.0
DYD3_k127_6653312_8 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000004157 95.0
DYD3_k127_6653312_9 Transcriptional regulator - - - 0.00000000000000008951 87.0
DYD3_k127_6655902_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 1.008e-235 747.0
DYD3_k127_6655902_1 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 477.0
DYD3_k127_6655902_10 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.0000002885 58.0
DYD3_k127_6655902_11 PFAM Sporulation and spore germination - - - 0.00001048 57.0
DYD3_k127_6655902_12 Essential cell division protein - - - 0.00007818 50.0
DYD3_k127_6655902_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 432.0
DYD3_k127_6655902_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 398.0
DYD3_k127_6655902_4 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006675 319.0
DYD3_k127_6655902_5 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001482 289.0
DYD3_k127_6655902_6 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000001862 151.0
DYD3_k127_6655902_7 PFAM ribonuclease H K03469,K06864 - 3.1.26.4 0.00000000000000000000000000000048 132.0
DYD3_k127_6655902_8 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 - - 0.0000000000000000000000006239 108.0
DYD3_k127_6655902_9 succinate dehydrogenase K00242 - - 0.00000000000000000000002814 111.0
DYD3_k127_6696330_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K00058,K03977 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 486.0
DYD3_k127_6696330_1 Anion-transporting ATPase K01551 - 3.6.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009832 401.0
DYD3_k127_6696330_2 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 GO:0003674,GO:0003824,GO:0004367,GO:0006072,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0046167,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901576 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 302.0
DYD3_k127_6696330_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000002766 96.0
DYD3_k127_6696330_4 PFAM Sodium sulphate symporter K14445 - - 0.000000001436 68.0
DYD3_k127_6718299_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 591.0
DYD3_k127_6718299_1 Proline racemase K01777,K12658 - 5.1.1.4,5.1.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 472.0
DYD3_k127_6718299_2 COG0474 Cation transport ATPase K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005353 425.0
DYD3_k127_6718299_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 388.0
DYD3_k127_6718299_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 336.0
DYD3_k127_6718299_5 XdhC and CoxI family - - - 0.000000000000000000000000000000000000001063 156.0
DYD3_k127_6718299_6 LeuA allosteric (dimerisation) domain K01649 - 2.3.3.13 0.00000002563 63.0
DYD3_k127_6721585_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 493.0
DYD3_k127_6721585_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005395 312.0
DYD3_k127_6721585_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.0000000000000000000000000341 109.0
DYD3_k127_6721585_11 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - 0.000000000000000002321 94.0
DYD3_k127_6721585_12 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000004771 82.0
DYD3_k127_6721585_13 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.00000005841 56.0
DYD3_k127_6721585_14 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000161 56.0
DYD3_k127_6721585_2 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007568 296.0
DYD3_k127_6721585_3 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000223 240.0
DYD3_k127_6721585_4 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000001813 209.0
DYD3_k127_6721585_5 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000007122 186.0
DYD3_k127_6721585_6 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000003043 181.0
DYD3_k127_6721585_7 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000001986 164.0
DYD3_k127_6721585_8 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000007662 132.0
DYD3_k127_6721585_9 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000000000000000008973 132.0
DYD3_k127_6762645_0 Glycosyl hydrolases family 15 - - - 1.036e-308 976.0
DYD3_k127_6762645_1 citrate synthase K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009511 595.0
DYD3_k127_6762645_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 437.0
DYD3_k127_6762645_3 cystathionine K01739 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009092,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0017144,GO:0019279,GO:0019343,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071265,GO:0071266,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 438.0
DYD3_k127_6762645_4 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 404.0
DYD3_k127_6762645_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000005399 175.0
DYD3_k127_6780783_0 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 343.0
DYD3_k127_6780783_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 333.0
DYD3_k127_6780783_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004746 312.0
DYD3_k127_6780783_3 Belongs to the SEDS family K03588 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 316.0
DYD3_k127_6780783_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000003539 269.0
DYD3_k127_6780783_5 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000002451 258.0
DYD3_k127_6780783_6 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000005501 235.0
DYD3_k127_6780783_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000002264 203.0
DYD3_k127_6780783_8 cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.00017 53.0
DYD3_k127_6795065_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 1.944e-294 928.0
DYD3_k127_6795065_1 Winged helix DNA-binding domain K09927 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093 495.0
DYD3_k127_6795065_10 PFAM alpha beta hydrolase fold K01259 - 3.4.11.5 0.0000000000000000000000000000000000000000000000000000000001301 214.0
DYD3_k127_6795065_11 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000000003687 198.0
DYD3_k127_6795065_12 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000006158 156.0
DYD3_k127_6795065_13 Domain of unknown function (DUF1905) - - - 0.000000000000000000000000000000005591 129.0
DYD3_k127_6795065_14 Transcriptional regulator - - - 0.0000000000000000000000000000002156 126.0
DYD3_k127_6795065_15 diguanylate cyclase - - - 0.0000000000000000000000000002603 130.0
DYD3_k127_6795065_16 Histidine kinase - - - 0.000000000000000000000000005629 126.0
DYD3_k127_6795065_17 - - - - 0.00000000000000000000000001606 113.0
DYD3_k127_6795065_18 DinB family - - - 0.000000000000000000000001035 116.0
DYD3_k127_6795065_19 Cbs domain - - - 0.000000000000000000006195 97.0
DYD3_k127_6795065_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 490.0
DYD3_k127_6795065_20 Outer membrane autotransporter - - - 0.00000000000000001255 98.0
DYD3_k127_6795065_21 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000001263 73.0
DYD3_k127_6795065_22 heat shock protein binding K03686 - - 0.000000001095 66.0
DYD3_k127_6795065_23 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000005871 56.0
DYD3_k127_6795065_3 Peptidase family M3 K01392 - 3.4.24.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009241 479.0
DYD3_k127_6795065_4 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 422.0
DYD3_k127_6795065_5 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000266 363.0
DYD3_k127_6795065_6 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007126 336.0
DYD3_k127_6795065_7 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006217 267.0
DYD3_k127_6795065_8 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000000000000000000007566 258.0
DYD3_k127_6795065_9 DNA binding - - - 0.000000000000000000000000000000000000000000000000000000000000003288 227.0
DYD3_k127_6834582_0 Phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0 1294.0
DYD3_k127_6834582_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 4.076e-218 694.0
DYD3_k127_6834582_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K03737 - 1.2.7.1 3.812e-209 665.0
DYD3_k127_6834582_3 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008822 419.0
DYD3_k127_6834582_4 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 327.0
DYD3_k127_6834582_5 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004322 314.0
DYD3_k127_6834582_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000004595 121.0
DYD3_k127_6834582_7 signal transduction protein with CBS domains K07744 - - 0.000000000000000003824 91.0
DYD3_k127_6834582_8 cheY-homologous receiver domain - - - 0.000000000000005072 87.0
DYD3_k127_686349_0 Belongs to the thiolase family K00626,K02615 - 2.3.1.174,2.3.1.223,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 524.0
DYD3_k127_686349_1 F420-dependent oxidoreductase, G6PDH family K15510 - 1.1.98.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 473.0
DYD3_k127_686349_10 - - - - 0.00000000007926 72.0
DYD3_k127_686349_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007238 362.0
DYD3_k127_686349_3 Binding-protein-dependent transport system inner membrane component K11071 - - 0.000000000000000000000000000000000000000000000000000000000002631 219.0
DYD3_k127_686349_4 Response regulator receiver domain protein - - - 0.00000000000000000000000000000000000000000000000000001579 195.0
DYD3_k127_686349_5 AAA domain - - - 0.0000000000000000000000000000000000000000000001518 172.0
DYD3_k127_686349_6 Binding-protein-dependent transport system inner membrane component K11070 - - 0.000000000000000000000000000000000000000000002085 184.0
DYD3_k127_686349_7 FR47-like protein - - - 0.00000000000000000000000000000000000000000008656 172.0
DYD3_k127_686349_8 Two component regulator propeller K00936 - 2.7.13.3 0.0000000000000000000000000000000000000001083 156.0
DYD3_k127_686349_9 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000005453 141.0
DYD3_k127_6877434_0 Acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007949 468.0
DYD3_k127_6877434_1 Glycosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 386.0
DYD3_k127_6877434_2 UDP binding domain K00066 - 1.1.1.132 0.000000000000000000000000000000000000000000000000000000000000000000002037 242.0
DYD3_k127_6877434_3 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000006319 123.0
DYD3_k127_6877434_4 Cell envelope-related transcriptional attenuator domain - - - 0.000000000000000000007688 104.0
DYD3_k127_6917958_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006646 309.0
DYD3_k127_6917958_1 Adenosine/AMP deaminase - - - 0.0000000000000000000000000000000000000003128 169.0
DYD3_k127_6917958_2 Peptidase, M23 K21471 - - 0.0000000000000000000000001533 121.0
DYD3_k127_6917958_3 peptidase A24A prepilin type IV K02654 - 3.4.23.43 0.00000000000000002034 91.0
DYD3_k127_6917958_4 AsmA-like C-terminal region - - - 0.0000000000002668 79.0
DYD3_k127_6917958_5 glycosyl transferase family - GO:0001666,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006950,GO:0008144,GO:0008150,GO:0008658,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0033218,GO:0033293,GO:0033554,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042597,GO:0043167,GO:0043168,GO:0043177,GO:0044464,GO:0050896,GO:0051716,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0097159,GO:1901363,GO:1901681 - 0.0000000000003729 76.0
DYD3_k127_6944253_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 340.0
DYD3_k127_6944253_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 334.0
DYD3_k127_6944253_2 recombinase XerD K04763 GO:0008150,GO:0040007 - 0.000000000000000000000000000000000000000000000000000001345 204.0
DYD3_k127_6944253_3 FemAB family K05363,K11693 - 2.3.2.10,2.3.2.16 0.00000000000000000000000000002892 137.0
DYD3_k127_6944253_4 Uroporphyrinogen-III synthase HemD K02303,K13542 - 2.1.1.107,4.2.1.75 0.0000003532 62.0
DYD3_k127_6977682_0 ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007048 556.0
DYD3_k127_6977682_1 ABC transporter substrate-binding protein PnrA-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 438.0
DYD3_k127_6977682_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 346.0
DYD3_k127_6977682_3 PFAM Formiminotransferase domain, N-terminal subdomain K00603,K01746 - 2.1.2.5,4.3.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 317.0
DYD3_k127_6977682_4 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 325.0
DYD3_k127_6977682_5 IMP dehydrogenase / GMP reductase domain K00101,K16422 - 1.1.2.3,1.1.3.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 308.0
DYD3_k127_6977682_6 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 280.0
DYD3_k127_6977682_7 MafB19-like deaminase K01485 - 3.5.4.1 0.00000000000000000000000000000000000000000000000000000000000001066 228.0
DYD3_k127_6977682_8 glutamine-fructose-6-phosphate transaminase (isomerizing) activity - - - 0.000000000000000003367 98.0
DYD3_k127_7000506_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 444.0
DYD3_k127_7000506_1 PFAM O-methyltransferase, family 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005956 269.0
DYD3_k127_7000506_10 Peptidase inhibitor I9 - - - 0.000000000000000000008561 106.0
DYD3_k127_7000506_11 Protein of unknown function (DUF971) K03593 - - 0.000000000000009555 78.0
DYD3_k127_7000506_12 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000001487 59.0
DYD3_k127_7000506_2 N-acetylglucosaminylinositol deacetylase activity K18455 - 3.5.1.115 0.0000000000000000000000000000000000000000000000000000000000000246 228.0
DYD3_k127_7000506_3 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000166 230.0
DYD3_k127_7000506_4 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.00000000000000000000000000000000000000000000000000000000002567 216.0
DYD3_k127_7000506_5 META domain - - - 0.0000000000000000000000000000000000000000000000004455 185.0
DYD3_k127_7000506_6 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000009152 174.0
DYD3_k127_7000506_7 PFAM Patatin K07001 GO:0003674,GO:0003824,GO:0016787 - 0.0000000000000000000000000001945 126.0
DYD3_k127_7000506_8 PFAM Nitroreductase - - - 0.000000000000000000000001791 118.0
DYD3_k127_7000506_9 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000008188 100.0
DYD3_k127_7025353_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 573.0
DYD3_k127_7025353_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003223 326.0
DYD3_k127_7025353_2 DRTGG domain K06873 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003377 293.0
DYD3_k127_7025353_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000008641 245.0
DYD3_k127_7025353_4 PFAM HhH-GPD family protein - - - 0.00000000000000000000000000000000000000000000000000000001536 203.0
DYD3_k127_7025353_5 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000002129 109.0
DYD3_k127_7039457_0 Endonuclease/Exonuclease/phosphatase family K07004 - - 8.342e-203 652.0
DYD3_k127_7039457_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005352 443.0
DYD3_k127_7039457_2 ECF sigma factor K03088 - - 0.000000000000000000000000000000001842 137.0
DYD3_k127_7039457_3 - - - - 0.0000007077 60.0
DYD3_k127_7056365_0 Belongs to the aldehyde dehydrogenase family K22187 - - 3.878e-195 622.0
DYD3_k127_7056365_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000005942 155.0
DYD3_k127_7056365_2 Peptidase S16, lon domain protein K01338,K07157 - 3.4.21.53 0.00000000000000000000000000000000001077 145.0
DYD3_k127_7063606_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 1.247e-307 967.0
DYD3_k127_7063606_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619 491.0
DYD3_k127_7063606_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 402.0
DYD3_k127_7063606_3 Methyltransferase domain - - - 0.000000000000000000000000000000007142 138.0
DYD3_k127_7063606_4 Helix-hairpin-helix motif K02237 - - 0.000000000000000000000003971 111.0
DYD3_k127_7063606_5 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000002161 102.0
DYD3_k127_7063606_6 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 0.0000000000000000006313 94.0
DYD3_k127_7063606_7 Bacterial regulatory proteins, tetR family - - - 0.0000000005937 68.0
DYD3_k127_7063606_8 Domain of unknown function (DUF4399) - - - 0.00003483 55.0
DYD3_k127_7102729_0 AcrB/AcrD/AcrF family - - - 0.0 1324.0
DYD3_k127_7102729_1 AcrB/AcrD/AcrF family - - - 1.816e-266 855.0
DYD3_k127_7102729_10 - - - - 0.0000000000000000005977 103.0
DYD3_k127_7102729_11 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000003197 88.0
DYD3_k127_7102729_12 PFAM chitin-binding domain 3 protein - - - 0.0000000000002477 85.0
DYD3_k127_7102729_13 involved in cell wall biogenesis K00721 - 2.4.1.83 0.00000000002432 71.0
DYD3_k127_7102729_14 RESPONSE REGULATOR receiver - - - 0.0003688 44.0
DYD3_k127_7102729_2 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005166 582.0
DYD3_k127_7102729_3 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 466.0
DYD3_k127_7102729_4 acid phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006525 418.0
DYD3_k127_7102729_5 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000006518 269.0
DYD3_k127_7102729_7 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00000000000000000000000000000000000000000000000000000000001283 235.0
DYD3_k127_7102729_8 - - - - 0.0000000000000000000000000000000000000000000000000000003238 205.0
DYD3_k127_7102729_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000005657 115.0
DYD3_k127_7147243_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 566.0
DYD3_k127_7147243_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007655 374.0
DYD3_k127_7147243_2 TIGRFAM metallophosphoesterase, MG_246 BB_0505 family K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 302.0
DYD3_k127_7147243_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000001967 219.0
DYD3_k127_7147243_4 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000006252 222.0
DYD3_k127_7147243_5 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000007641 204.0
DYD3_k127_7193317_0 TIGRFAM oligopeptide dipeptide ABC transporter, ATPase subunit K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008633 420.0
DYD3_k127_7193317_1 Belongs to the ABC transporter superfamily K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006032 392.0
DYD3_k127_7193317_2 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 375.0
DYD3_k127_7193317_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 357.0
DYD3_k127_7193317_4 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 297.0
DYD3_k127_7193317_5 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000102 239.0
DYD3_k127_805976_0 transferase activity, transferring glycosyl groups K09118,K13693,K21349 - 2.4.1.266,2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006777 467.0
DYD3_k127_805976_1 Glycosyl transferase family 2 K21349 - 2.4.1.268 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 383.0
DYD3_k127_805976_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 353.0
DYD3_k127_805976_3 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 346.0
DYD3_k127_805976_4 Belongs to the glycerate kinase type-1 family K00865 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 325.0
DYD3_k127_805976_5 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000001095 223.0
DYD3_k127_805976_6 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000974 146.0
DYD3_k127_805976_7 transporter K07238,K11021 - - 0.0000000000000000000000000000001258 133.0
DYD3_k127_805976_8 Belongs to the Fur family K03711 - - 0.00000000000000009175 94.0
DYD3_k127_805976_9 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00000002178 64.0
DYD3_k127_823934_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004508 413.0
DYD3_k127_823934_1 Protein of unknown function (DUF1290) - - - 0.00000000000000000000000000000009554 127.0
DYD3_k127_823934_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000577 82.0
DYD3_k127_839471_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 617.0
DYD3_k127_839471_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004808 481.0
DYD3_k127_839471_2 TIGRFAM 6-phosphogluconate dehydrogenase, decarboxylating K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005812 341.0
DYD3_k127_839471_3 ABC transporter (permease) K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000002552 235.0
DYD3_k127_839471_4 PFAM binding-protein-dependent transport systems inner membrane component K15582 - - 0.000000000000000000000000000000000000000000000000000000001529 218.0
DYD3_k127_839471_5 collagen metabolic process K17948 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0016853,GO:0016854,GO:0016857,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 5.1.3.24 0.00000000000000000000000000000000000000000000000003461 205.0
DYD3_k127_839471_6 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.0000000000000000000000000000000000000000000000002994 188.0
DYD3_k127_839471_7 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.000000000000000000000000000000000000000000000001359 199.0
DYD3_k127_839471_8 Glucose-6-phosphate dehydrogenase subunit - - - 0.00000000000000000000000000000000000000003017 168.0
DYD3_k127_839471_9 CarboxypepD_reg-like domain - - - 0.000000000000000000003941 110.0
DYD3_k127_871936_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009011 391.0
DYD3_k127_871936_1 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 295.0
DYD3_k127_871936_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000001003 119.0
DYD3_k127_871936_11 nitrile biosynthetic process - - - 0.00000000000000000000000003673 123.0
DYD3_k127_871936_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000505 232.0
DYD3_k127_871936_3 serine-type peptidase activity - - - 0.00000000000000000000000000000000000000003499 165.0
DYD3_k127_871936_4 galactose-1-phosphate uridylyltransferase - - - 0.0000000000000000000000000000000000000003575 154.0
DYD3_k127_871936_5 Dihydroorotate dehydrogenase K17723 GO:0003674,GO:0003824,GO:0003954,GO:0006139,GO:0006206,GO:0006208,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016491,GO:0016651,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 1.3.1.1 0.000000000000000000000000000000000000001447 154.0
DYD3_k127_871936_6 Helix-turn-helix domain - - - 0.000000000000000000000000000000000001177 144.0
DYD3_k127_871936_7 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000002844 149.0
DYD3_k127_871936_8 OsmC-like protein K04063 - - 0.0000000000000000000000000000000006658 139.0
DYD3_k127_871936_9 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000001162 137.0
DYD3_k127_882948_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 4.249e-300 947.0
DYD3_k127_882948_1 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000851 248.0
DYD3_k127_882948_10 Copper binding proteins, plastocyanin/azurin family - - - 0.0002481 49.0
DYD3_k127_882948_2 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000007731 198.0
DYD3_k127_882948_4 BioY family K03523 - - 0.0000000000000000000000000000000000000002109 161.0
DYD3_k127_882948_5 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000003417 154.0
DYD3_k127_882948_6 VIT family - - - 0.00000000000000000000000000000109 137.0
DYD3_k127_882948_7 - - - - 0.000000000000000000000001827 120.0
DYD3_k127_882948_8 Domain of unknown function (DUF4349) - - - 0.0000000000000000005748 101.0
DYD3_k127_882948_9 Lamin Tail Domain - - - 0.0000000000000006677 87.0
DYD3_k127_884670_0 peptidase activity, acting on L-amino acid peptides K13735,K20276,K21449 - - 0.0 1136.0
DYD3_k127_884670_1 Zinc carboxypeptidase - - - 0.000000000000001929 91.0
DYD3_k127_927042_0 NAD(P)-binding Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 550.0
DYD3_k127_927042_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 485.0
DYD3_k127_927042_10 PFAM 60 kDa inner membrane insertion protein K03217 - - 0.0000000000000000000000000000006287 136.0
DYD3_k127_927042_11 R3H domain protein K06346 - - 0.000000000000000000000000001082 130.0
DYD3_k127_927042_12 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000001444 101.0
DYD3_k127_927042_13 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000003376 81.0
DYD3_k127_927042_14 positive regulation of macromolecule biosynthetic process K03970,K03973 - - 0.00000000000009549 84.0
DYD3_k127_927042_15 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000001772 68.0
DYD3_k127_927042_16 - - - - 0.00000001889 66.0
DYD3_k127_927042_17 Ribonuclease P K03536 - 3.1.26.5 0.0000005313 61.0
DYD3_k127_927042_18 protein serine/threonine phosphatase activity - - - 0.0000005837 63.0
DYD3_k127_927042_19 membrane - - - 0.000003689 58.0
DYD3_k127_927042_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 365.0
DYD3_k127_927042_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 351.0
DYD3_k127_927042_4 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000002632 234.0
DYD3_k127_927042_5 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000001514 229.0
DYD3_k127_927042_6 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000008652 205.0
DYD3_k127_927042_7 Glycosyl transferase K00728 - 2.4.1.109 0.000000000000000000000000000000000000000002008 182.0
DYD3_k127_927042_8 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000002367 147.0
DYD3_k127_927042_9 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000000005215 143.0
DYD3_k127_930878_0 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 507.0
DYD3_k127_930878_1 AAA ATPase, central domain protein K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 439.0
DYD3_k127_930878_2 Protein of unknown function (DUF4446) - - - 0.00000000000000000000000001069 121.0
DYD3_k127_930878_3 Elongation factor SelB, winged helix K03833 - - 0.00000000001342 74.0
DYD3_k127_930878_4 response regulator receiver - - - 0.00001836 58.0
DYD3_k127_995664_0 TIGRFAM Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 467.0
DYD3_k127_995664_1 Zn peptidase - - - 0.00000000000000000000000000000000000000000001529 179.0
DYD3_k127_995664_2 Beta-lactamase superfamily domain - - - 0.000000000000000000000001878 108.0